Genbank References: capsid (p24)
BLAST search against GenBank file v. V 269.0 released on 2025-12-15
(search results include 166420 sequences from 1493 references)
(search results include 166420 sequences from 1493 references)
| This page contains a list of all GenBank entries on HIV-1 capsid (p24) grouped by reference. The reference may include a published paper or the title provided with the GenBank submission. The entries were created by performing a BLAST search of the GenBank using the capsid NCBI Reference Sequence NP_579880. The E-value and # in GB columns contain the lowest e-value (best match) for all the GenBank entries associated with a specific reference and the number of entries in GenBank associated with the reference. For studies that ..... , number of patients, ART status, .... |
| Authors | Title | Citation | E-value | # in Gb | #Pts | ART | Source | Cloning | StudyType |
|---|---|---|---|---|---|---|---|---|---|
| Abad (2022) | Prevalent subtypes and one-year outcomes of an HIV-cohort from an urban Philippine center | Medicine (Baltimore) 100 (51), e28315 (2021) | 2.27e-153 | 66 | |||||
| Abecasis (2007) | Recombination confounds the early evolutionary history of human immunodeficiency virus type 1: subtype G is a circulating recombinant form | J. Virol. 81 (16), 8543-8551 (2007) | 1.49e-135 | 1 | |||||
| Abott (2018) | The complete genomic sequence of the HIV-1 AAV isolate | Unpublished | 8.61e-156 | 3 | Unpublished | ||||
| Abrahams (2019) | The Replication-Competent HIV-1 Latent Reservoir is Primarily Established Near the Time of Therapy Initiation | Sci Transl Med . 2019 Oct 9;11(513):eaaw5589 | 5.77e-149 | 129 | 9 | Mixed | Plasma; PBMC | SGS | Reservoir |
| Acharya (2019) | Near-full length genetic characterization of a novel HIV-1 unique recombinant with similarities to A1, CRF01_AE and CRFO2_AG viruses in Yaounde, Cameroon | AIDS Res. Hum. Retroviruses (2019) In press | 2.92e-144 | 1 | |||||
| Adeniyi (2021) | Genetic Characterization of HIV-1 Subtype A1/C/D/B/K Unique Recombinant Form from Eastern Cape, South Africa | AIDS Res Hum Retroviruses 37 (2), 162-168 (2021) | 1.05e-146 | 1 | |||||
| Adland (2020) | Sex-specific innate immune selection of HIV-1 in utero is associated with increased female susceptibility to infection | Unpublished | 1.34e-162 | 4 | Unpublished | ||||
| Adojaan (2016) | Predominance of a Rare Type of HIV-1 in Estonia | J. Acquir. Immune Defic. Syndr. 39 (5), 598-605 (2 | 1.81e-143 | 4 | |||||
| Aghokeng (2016) | Full-length sequence analysis of SIVmus in wild populations of mustached monkeys (Cercopithecus cephus) from Cameroon provides evidence for two co-circulating SIVmus lineages | Virology 360 (2), 407-418 (2007) | 2.12e-94 | 3 | |||||
| Aghokeng (2016) | Extensive survey on the prevalence and genetic diversity of SIVs in primate bushmeat provides insights into risks for potential new cross-species transmissions | Infect. Genet. Evol. 10 (3), 386-396 (2010) | 1.06e-93 | 1 | |||||
| Ahuka-Mundeke (2016) | Full-length genome sequence of a simian immunodeficiency virus (SIV) infecting a captive agile mangabey (Cercocebus agilis) is closely related to SIVrcm infecting wild red-capped mangabeys (Cercocebus torquatus) in Cameroon | J. Gen. Virol. 91 (12), 2959-2964 (2010) | 1.51e-102 | 2 | |||||
| Ahuka-Mundeke (2017) | Full Genome Characterization of a New Simian Immune Deficiency Virus Lineage in a Naturally Infected Cercopithecus ascanius whitesidei in the Democratic Republic of Congo Reveals High Genetic Diversity Among Red-Tailed Monkeys in Central and Eastern Africa | AIDS Res. Hum. Retroviruses (2017) In press | 3.03e-93 | 1 | |||||
| Al-Kaabi (2024) | Epistatic interaction between ERAP2 and HLA modulates viral adaptation and HIV-1 disease outcome | Unpublished | 1.31e-169 | 3 | |||||
| Alampalli (2018) | Deep sequencing of near full-length HIV-1 genomes from plasma identifies circulating subtype C and infrequent occurrence of AC recombinant form in Southern India | PLoS ONE 12 (12), e0188603 (2017) | 5.51e-167 | 18 | |||||
| Alencar (2013) | Comparison between the region of subtypes of env and gag in patients with multidrug resistant antiretroviral therapy | Unpublished | 3.17e-157 | 72 | Unpublished | ||||
| Ali Rai (2024) | Treatment of Multidrug-Resistant HIV using a Novel Anti-Domain 1 CD4 Antibody and an Injectable Long-Acting Antiretroviral Drug | Unpublished | 1.06e-165 | 144 | |||||
| Alizon (2002) | Genetic variability of the AIDS virus: nucleotide sequence analysis of two isolates from African patients | Cell 46 (1), 63-74 (1986) | 1.96e-150 | 2 | |||||
| Allen (2016) | Increased Detection of HIV-Specific T Cell Responses By Combination of Centralized Sequences with Comparable in vitro Immunogenicity | Unpublished | 7.25e-170 | 16 | Unpublished | ||||
| Allen (2016) | Selective escape from CD8+ T-cell responses represents a major driving force of human immunodeficiency virus type 1 (HIV-1) sequence diversity and reveals constraints on HIV-1 evolution | J. Virol. 79 (21), 13239-13249 (2005) | 4.75e-155 | 14 | |||||
| Allen (2016) | Epidemiologically-Linked Transmission of HIV-1 Illustrates the Impact of Host Genetics on Virological Outcome | Unpublished | 5.03e-165 | 4 | Unpublished | ||||
| Almond (1996) | Population sequence analysis of a simian immunodeficiency virus (32H reisolate of SIVmac251): a virus stock used for international vaccine studies | AIDS Res. Hum. Retroviruses 8 (1), 77-88 (1992) | 7.71e-108 | 8 | |||||
| Altfeld (2016) | HIV-1 superinfection despite broad CD8+ T-cell responses containing replication of the primary virus | Nature 420 (6914), 434-439 (2002) | 4.08e-150 | 2 | |||||
| Alves (2018) | Characterization of HIV-1 Near Full-Length Proviral Genome Quasispecies from Patients with Undetectable Viral Load Undergoing First-Line HAART Therapy | Viruses 9 (12), E392 (2017) | 1.18e-161 | 23 | |||||
| Alves (2019) | Estimating HIV-1 Genetic Diversity in Brazil Through Next-Generation Sequencing | Front Microbiol 10, 1-11 (2019) | 2.03e-164 | 25 | 25 | Uncertain | PBMC | NGS | Molecular epidemiology |
| Alves (2022) | Adaptation to HLA-associated immune pressure in acute HIV infection and in circulating HIV-1 strains | Unpublished | 6.42e-168 | 19 | |||||
| Aman (2016) | Optimization of full-length sequencing of HIV type 1 from Senegal | Unpublished | 9.53e-145 | 2 | Unpublished | ||||
| Amogne (2016) | Phylogenetic Analysis of Ethiopian HIV-1 Subtype C Near Full-Length Genomes Reveals High Intrasubtype Diversity and a Strong Geographical Cluster | AIDS Res. Hum. Retroviruses (2016) In press | 4.8e-149 | 24 | |||||
| An (2013) | Reconstituting the epidemic history of CRF01_AE among MSM in Liaoning, northeastern China: Implication in expanding MSM epidemic in China | J. Virol. (2012) In press | 4.37e-152 | 39 | 43 | Naive | Plasma | SGS | Molecular epidemiology |
| An (2016) | A Novel HIV-1 Second-Generation Recombinant Form (CRF01_AE/CRF07_BC) among heterosexuals in Nei Monggoi Autonomous Region in China | AIDS Res. Hum. Retroviruses (2016) In press | 1.59e-145 | 1 | |||||
| Ana (2024) | Identification of a new HIV-1 circulating recombinant form (CRF148_cpx) derived from subtypes B, C, and F1 | Unpublished | 5.39e-150 | 3 | |||||
| Anderson (2016) | Testing the hypothesis of a recombinant origin of human immunodeficiency virus type 1 subtype E | J. Virol. 74 (22), 10752-10765 (2000) | 3.64e-146 | 4 | |||||
| Anderson (2016) | Analysis of envelope changes acquired by SIVmac239 during neuroadaption in rhesus macaques | Virology 195 (2), 616-626 (1993) | 7.97e-100 | 1 | |||||
| Andresen (2016) | Characterization of near full-length genomes of HIV type 1 strains in Denmark: basis for a universal therapeutic vaccine | AIDS Res. Hum. Retroviruses 23 (11), 1442-1448 (20 | 2.54e-154 | 17 | |||||
| Antar (2020) | Longitudinal study reveals HIV-1-infected CD4+ T cell dynamics during long-term antiretroviral therapy | J. Clin. Invest. (2020) In press | 1.11e-170 | 455 | 8 | ART | PBMC | SGS | Reservoir |
| Appah (2023) | Molecular Epidemiology of HIV-1 in Ghana: Subtype Distribution, Drug Resistance and Coreceptor Usage | Viruses 15 (1), 128 (2022) | 1.37e-149 | 76 | |||||
| Araujo (2016) | Lower Prevalence of Human Immunodeficiency Virus Type 1 Brazilian Subtype B Found in Northeastern Brazil with Slower Progression to AIDS | AIDS Res. Hum. Retroviruses 26 (11), 1249-1254 (20 | 3.38e-174 | 42 | 42 | Uncertain | PBMC | Direct PCR | Molecular epidemiology |
| Arcia (2018) | HIV-1 Adaptation to Predominant HLA-I Alleles in Medellin, Colombia, Through the Selection of Novel Potential Immune Escape Mutations | Infect Genet Evol. 2019 Apr;69:267-278 | 4.14e-173 | 45 | 50 | Naive | Plasma | Direct PCR | HLA |
| Arenas (2016) | Influence of mutation and recombination on HIV-1 in vitro fitness recovery | Mol. Phylogenet. Evol. 94 (PT A), 264-270 (2016) | 1.96e-152 | 12 | |||||
| Arroyo (2016) | HIV type 1 subtypes among blood donors in the Mbeya region of southwest Tanzania | AIDS Res. Hum. Retroviruses 20 (8), 895-901 (2004) | 2.51e-152 | 20 | |||||
| Arroyo (2016) | HIV-1 diversity and prevalence differ between urban and rural areas in the Mbeya region of Tanzania | AIDS 19 (14), 1517-1524 (2005) | 7.85e-148 | 14 | |||||
| Aulicino (2006) | Sequence analysis of a South American HIV type 1 BC recombinant | AIDS Res. Hum. Retroviruses 21 (10), 894-896 (2005 | 1.7e-145 | 1 | |||||
| Aulicino (2016) | Circulation of novel HIV type 1 A, B/C, and F subtypes in Argentina | AIDS Res. Hum. Retroviruses 21 (2), 158-164 (2005) | 2.1e-141 | 1 | |||||
| Auwanit (2006) | Full-length sequences of two CRF01_ae (subtype e) HIV type 1 isolates from 1995 samples of patients with sexually transmitted diseases in Thailand | AIDS Res. Hum. Retroviruses 17 (9), 867-871 (2001) | 4.77e-145 | 2 | |||||
| Avi (2015) | Near Full-Length Genome Sequences of HIV-1 CRF06/A1 recombinat forms in Estonian Intravenous Drug Users Population | Unpublished | 7.5e-150 | 7 | Unpublished | ||||
| Ayouba (2013) | Evidence for continuing cross-species transmission of SIVsmm to humans: characterization of a new HIV-2 lineage in rural Cote d'Ivoire | AIDS 27 (15), 2488-2491 (2013) | 1.83e-101 | 1 | |||||
| Ayouba (2015) | Molecular characterization of a new mosaic Simian Immunodeficiency Virus in a naturally infected tantalus monkey (Chlorocebus tantalus) from Cameroon: a challenge to the virus-host co-evolution of SIVagm in African green monkeys | Infect. Genet. Evol. 30, 65-73 (2015) | 6.56e-105 | 1 | |||||
| Azevedo-Pereira (2016) | Complete nucleotide sequence of HIV-2ALI, a low infectious isolate with restricted tropism to primary CD4+ cells | Unpublished | 6.28e-103 | 1 | Unpublished | ||||
| Baalwa (2013) | Molecular identification, cloning and characterization of transmitted/founder HIV-1 subtype A, D and A/D infectious molecular clones | Virology 436 (1), 33-48 (2013) | 7.14e-155 | 216 | 12 | Naive | Plasma; PBMC | SGS | Acute infection |
| Bacchus-Souffan (2020) | CD4 T cell proliferation and differentiation contribute to HIV persistence during antiretroviral therapy | PLoS Pathog. 2021 Jan 19;17(1):e1009214 | 6.37e-166 | 219 | 24 | ART | PBMC | SGS | Reservoir |
| Bach Nhu (2016) | Cloning and expression of the gene coding for P24 protein from HIV infected patient | Unpublished | 8.47e-148 | 1 | Unpublished | ||||
| Bacque (2019) | Identification of a new HIV-1 BF circulating recombinant form in Spain and Paraguay | Unpublished | 5.39e-147 | 1 | Unpublished | ||||
| Bacque (2019) | Identification of a new HIV-1 BF intersubtype recombinant form (CRF75_BF) circulating in Spain, Italy and Brazil | Unpublished | 4.32e-149 | 1 | Unpublished | ||||
| Bacque (2021) | Identification of CRF66_BF, a new HIV-1 circulating recombinant form of South American origin | Front Microbiol (2021) In press | 5.83e-148 | 5 | |||||
| Bacque (2023) | Identification of a HIV-1 circulating BF1 recombinant form (CRF75_BF1) of Brazilian origin that also circulates in Southwestern Europe | Front Microbiol 14 (2023) In press | 6.41e-148 | 2 | |||||
| Badreddine (2016) | Identification and characterization of HIV type 1 subtypes present in the Kingdom of Saudi Arabia: high level of genetic diversity found | AIDS Res. Hum. Retroviruses 23 (5), 667-674 (2007) | 9.84e-173 | 58 | 58 | Mixed | Plasma; PBMC | Direct PCR | Molecular epidemiology |
| Baier (2016) | Complete nucleotide sequence of a simian immunodeficiency virus from African green monkeys: a novel type of intragroup divergence | Virology 176 (1), 216-221 (1990) | 1.45e-99 | 1 | |||||
| Bailes (2020) | Hybrid origin of SIV in chimpanzees | Science 300 (5626), 1713 (2003) | 1.26e-100 | 1 | |||||
| Bailey (2016) | Arteriviruses, pegiviruses, and lentiviruses are common among wild African monkeys | J. Virol. (2016) In press | 8.19e-105 | 33 | Unpublished | ||||
| Bailey (2006) | Maintenance of viral suppression in HIV-1-infected HLA-B*57+ elite suppressors despite CTL escape mutations | J. Exp. Med. 203 (5), 1357-1369 (2006) | 8.86e-172 | 198 | 7 | Naive | Plasma; PBMC | SGS | HLA |
| Bailey (2007) | Evolution of HIV-1 in an HLA-B*57-positive patient during virologic escape | J. Infect. Dis. 196 (1), 50-55 (2007) | 3.56e-171 | 48 | 1 | Naive | PBMC | SGS | HLA |
| Bailey (2008) | Transmission of human immunodeficiency virus type 1 from a patient who developed AIDS to an elite suppressor | J. Virol. 82 (15), 7395-7410 (2008) | 3.11e-165 | 7 | |||||
| Baker (2016) | HIV Subtypes Distribution and Implication for Antiretroviral Treatment in a Ugandan Population | J Int Assoc Physicians AIDS Care 6, 260-263 (2007) | 2.21e-166 | 50 | 50 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Baldrich-Rubio (2016) | A complex human immunodeficiency virus type 1 A/G/J recombinant virus isolated from a seronegative patient with AIDS from Benin, West Africa | J. Gen. Virol. 82 (PT 5), 1095-1106 (2001) | 4.87e-139 | 1 | |||||
| Balinda (2021) | Characterization of Unique Recombinant Viruses Identified Within Subtype D HIV-1 Transmitted Founder Viruses in a Ugandan Acute Infection Cohort | Viruses. 2022 Feb 7;14(2):334 | 7.4e-152 | 30 | 29 | Naive | Plasma | SGS | Molecular epidemiology |
| Balinda (2025) | Evolutionary Dynamics of HIV-1 Recombinants: Analysis of Contemporary and Historical Viral Populations in East Africa | Unpublished | 3.45e-148 | 16 | |||||
| Balinda (2025) | Direct Submission | Submitted (02-SEP-2025) Viral Pathogen, MRC/UVRI & | 6.28e-147 | 4 | |||||
| Banin (2019) | Development of a Versatile, Near Full Genome Amplification and Sequencing Approach for a Broad Variety of HIV-1 Group M Variants | Viruses 11 (4), E317 (2019) | 1.33e-153 | 21 | |||||
| Barbian (2015) | Neutralization properties of simian immunodeficiency viruses infecting chimpanzees and gorillas | MBio 6 (2), e00296-15 (2015) | 1.9e-141 | 1 | |||||
| Barnett (1993) | Distinguishing features of an infectious molecular clone of the highly divergent and noncytopathic human immunodeficiency virus type 2 UC1 strain | J. Virol. 67 (2), 1006-1014 (1993) | 2.95e-104 | 1 | |||||
| Barnett (1997) | Direct Submission | Submitted (11-OCT-1995) Barton Bryant, HIV Databas | 4.34e-101 | 1 | Unpublished | ||||
| Bartolo (2011) | Origin and Epidemiological History of HIV-1 CRF14_BG | PLoS ONE 6 (9), E24130 (2011) | 6.1e-145 | 3 | |||||
| Bartolo (2016) | Sequencing and phylogenetic analysis of near full-length HIV-1 subtypes H and J from Cabinda, Angola | Unpublished | 1.2e-147 | 3 | Unpublished | ||||
| Baryshev (2012) | Genetic analysis of nearly full-length genome sequences of HIV-1, circulating in Russia | Unpublished | 4.09e-154 | 3 | Unpublished | ||||
| Baryshev (2012) | Near full-length genome characterization of a newly derived unique recombinant form AG HIV-1 circulating in Siberia | Retrovirology 9 (S1), 28 (2012) | 6.42e-144 | 1 | |||||
| Baryshev (2014) | HIV-1 Genetic Diversity in Russia: CRF63_02A1, a New HIV Type 1 Genetic Variant Spreading in Siberia | AIDS Res. Hum. Retroviruses 30 (6), 592-597 (2014) | 2.26e-145 | 13 | |||||
| Bbosa (2024) | Near full-length genome analysis of the first-reported HIV-1 Circulating Recombinant Form (CRF)_10CD in Uganda | AIDS Res Hum Retroviruses (2024) In press | 3.76e-149 | 14 | |||||
| Beamud (2019) | Characterization of New Recombinant Forms of HIV-1 From the Comunitat Valenciana (Spain) by Phylogenetic Incongruence | Front Microbiol 10, 1006 (2019) | 1.33e-145 | 7 | |||||
| Becker (2006) | Molecular and phylogenetic characterisation of a Guinea-Bissau-derived human immunodeficiency virus type 2 isolate | Unpublished | 6.96e-104 | 1 | Unpublished | ||||
| Beer (2016) | Characterization of novel simian immunodeficiency viruses from red-capped mangabeys from Nigeria (SIVrcmNG409 and -NG411) | J. Virol. 75 (24), 12014-12027 (2001) | 2.05e-102 | 2 | |||||
| Beer (2016) | Patterns of genomic sequence diversity among their simian immunodeficiency viruses suggest that L'Hoest monkeys (Cercopithecus lhoesti) are a natural lentivirus reservoir | J. Virol. 74 (8), 3892-3898 (2000) | 2.51e-88 | 3 | |||||
| Beer (2016) | Simian immunodeficiency virus (SIV) from sun-tailed monkeys (Cercopithecus solatus): evidence for host-dependent evolution of SIV within the C. lhoesti superspecies | J. Virol. 73 (9), 7734-7744 (1999) | 1.06e-85 | 1 | |||||
| Bender (2020) | The Landscape of Persistent Viral Genomes in ART-Treated SIV, SHIV, and HIV-2 Infections | Cell Host Microbe 26 (1), 73-85 (2019) | 1.46e-109 | 252 | NonM, HIV2, SIV | ||||
| Benveniste (2016) | Unpublished | 2.01e-100 | 1 | Unpublished | |||||
| Berg (2016) | A PAN-HIV STRATEGY FOR COMPLETE GENOME SEQUENCING | J. Clin. Microbiol. (2015) In press | 6.34e-153 | 56 | 56 | Uncertain | Cultured Plasma; PBMC | Uncertain | Molecular epidemiology |
| Bernardin (2016) | Primary infection of a male plasma donor with divergent HIV variants from the same source followed by rapid fluctuations in their relative frequency and viral recombination | AIDS Res. Hum. Retroviruses 19 (11), 1009-1015 (20 | 3.77e-153 | 3 | |||||
| Bernardin (2016) | Human immunodeficiency virus mutations during the first month of infection are preferentially found in known cytotoxic T-lymphocyte epitopes | J. Virol. 79 (17), 11523-11528 (2005) | 2.05e-154 | 18 | |||||
| Bernardin (2016) | Direct Submission | Submitted (12-DEC-2005) Molecular Virology, Blood | 2.85e-154 | 13 | Unpublished | ||||
| Bessong (2016) | A putative HIV-1 subtype C/CRF11_cpx unique recombinant from South Africa | Springerplus 5, 285 (2016) | 2.32e-141 | 1 | |||||
| Bhattacharya (2007) | Founder effects in the assessment of HIV polymorphisms and HLA allele associations | Science 315 (5818), 1583-1586 (2007) | 2.73e-169 | 103 | 103 | Naive | Uncertain | Uncertain | HLA |
| Bhusal (2014) | Genetic characterization of HIV-1 strains among different risk groups of Nepalase patients from central region of Nepal | Unpublished | 8.16e-162 | 35 | Unpublished | ||||
| Bhusal (2016) | Molecular epidemiology of HIV in central region of Nepal | Unpublished | 2.71e-148 | 10 | Unpublished | ||||
| Bibollet-Ruche (2012) | Efficient SIVcpz replication in human lymphoid tissue requires viral matrix protein adaptation | J. Clin. Invest. 122 (5), 1644-1652 (2012) | 1.61e-142 | 3 | |||||
| Bibollet-Ruche (2016) | New simian immunodeficiency virus infecting De Brazza's monkeys (Cercopithecus neglectus): evidence for a cercopithecus monkey virus clade | J. Virol. 78 (14), 7748-7762 (2004) | 3.28e-91 | 4 | |||||
| Bibollet-Ruche (2016) | Complete genome analysis of one of the earliest SIVcpzPtt strains from Gabon (SIVcpzGAB2) | AIDS Res. Hum. Retroviruses 20 (12), 1377-1381 (20 | 2.17e-140 | 1 | |||||
| Bibollet-Ruche (2022) | A chimpanzee SIV envelope glycoprotein with germline-targeting properties elicits V2-directed antibodies that cross-neutralize HIV-1 | Unpublished | 2.3e-121 | 1 | |||||
| Bikandou (2016) | Genetic subtyping of gag and env regions of HIV type 1 isolates in Republic of Congo | AIDS Res. Hum. Retroviruses 20 (9), 1005-1009 (200 | 9.88e-155 | 48 | 48 | Naive | PBMC | Molecular clones | Molecular epidemiology |
| Billings (2015) | The Number and Complexity of Pure and Recombinant HIV-1 Strains Observed within Incident Infections during the HIV and Malaria Cohort Study Conducted in Kericho, Kenya, from 2003 to 2006 | PLoS ONE 10 (8), E0135124 (2015) | 1.14e-152 | 58 | 58 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Billings (2017) | HIV-1 Genetic Diversity Among Incident Infections in Mbeya, Tanzania | AIDS Res. Hum. Retroviruses (2016) In press | 6.05e-152 | 95 | 95 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Billings (2019) | HIV-1 genetic diversity and demographic characteristics in Bulgaria | PLoS ONE 14 (5), e0217063 (2019) | 5.51e-154 | 15 | |||||
| Billings (2019) | New Subtype B Containing HIV-1 Circulating Recombinant of sub-Saharan Africa Origin in Nigerian Men who have Sex with Men | J. Acquir. Immune Defic. Syndr. (2019) In press | 6.07e-151 | 8 | |||||
| Birditt (2016) | HIV HLA epitope mapping from Durban, South Africa | Unpublished | 1.58e-148 | 16 | Unpublished | ||||
| Blanco (2015) | Near full length HIV-1 subtype B from Cuban individuals | Unpublished | 1.32e-152 | 4 | Unpublished | ||||
| Blankson (2007) | Isolation and characterization of replication-competent human immunodeficiency virus type 1 from a subset of elite suppressors | J. Virol. 81 (5), 2508-2518 (2007) | 1.03e-154 | 6 | |||||
| Blankson (2016) | HIV-1 Evolution Following Transmission to an HLA-B*5801 Positive Subject | Unpublished | 1.24e-167 | 3 | Unpublished | ||||
| Bodelle (2016) | Identification and genomic sequence of an HIV type 1 group N isolate from Cameroon | AIDS Res. Hum. Retroviruses 20 (8), 902-908 (2004) | 4e-132 | 1 | |||||
| Bolivar (2016) | The Challenge of HIV-1 Genetic Diversity: Discordant CD4+ T-Cell Count and Viral Load in an Untreated Patient Infected With a Subtype F Strain | J. Acquir. Immune Defic. Syndr. 52 (5), 659-661 (2 | 1.06e-142 | 1 | |||||
| Bond (2015) | Natural history of epidemic and non-epidemic HIV-2 groups | Unpublished | 2.07e-99 | 1 | Unpublished | ||||
| Boritz (2016) | CD4+ T cell targeting of human immunodeficiency virus type 1 (HIV-1) peptide sequences present in vivo during chronic, progressive HIV-1 disease | Virology 361 (1), 34-44 (2007) | 3.46e-173 | 63 | 9 | Naive | Plasma | Molecular clones | HLA |
| Boswell (2022) | Direct Submission | Submitted (14-DEC-2021) Department of Internal Med | 8.29e-115 | 368 | |||||
| Boswell (2022) | Direct Submission | Submitted (03-JAN-2022) Department of Internal Med | 3.83e-113 | 1 | |||||
| Bourara (2016) | Target cell APOBEC3C can induce limited G-to-A mutation in HIV-1 | PLoS Pathog. 3 (10), 1477-1485 (2007) | 5.2e-166 | 2 | |||||
| Brander (2016) | Increased detection of HIV-specific T cell responses by combination of centralized sequences with comparable in vitro immunogenicity | Unpublished | 2.45e-170 | 18 | Unpublished | ||||
| Brander (2016) | Efficient processing of the immunodominant, HLA-A*0201-restricted human immunodeficiency virus type 1 cytotoxic T-lymphocyte epitope despite multiple variations in the epitope flanking sequences | J. Virol. 73 (12), 10191-10198 (1999) | 2.47e-167 | 1 | |||||
| Brandt (2021) | Tracking HIV-1 Infected Cell Clones Using Integration Site-Specific qPCR | Unpublished | 2.06e-160 | 2 | Unpublished | ||||
| Brave (2016) | HIV-1 92UG031 p17p24gag | Unpublished | 1.5e-154 | 1 | Unpublished | ||||
| Bredell (2016) | HIV type 1 subtype C gag and nef diversity in Southern Africa | AIDS Res. Hum. Retroviruses 23 (3), 477-481 (2007) | 6.48e-164 | 64 | 64 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Brener (2015) | Disease progression despite protective HLA expression in an HIV-infected transmission pair | Retrovirology 12, 55 (2015) | 1.92e-156 | 6 | |||||
| Brener (2017) | Rapid HIV disease progression via cd8+ t-cell escape mimicking superinfection in an hla-b*27:05/b*57:01-positive transmission recipient | Retrovirology. 2018 Jan 16;15(1):7 | 5.7e-171 | 112 | 2 | Naive | PBMC | Molecular clones | HLA |
| Brennan (2007) | HIV-1 strains identified in blood donors in Brazil: Significant prevalence of B/F1 recombinants | AIDS Res Hum Retroviruses. 2007 Nov;23(11):1434-41 | 3.84e-174 | 85 | 91 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Brennan (2016) | HIV-1 strain diversity was stable in Cameroonian blood donors from 1996 to 2004 | J Acquir Immune Defic Syndr. 2008 Dec 1;49(4):432-9 | 3.62e-170 | 423 | 423 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Brennan (2016) | Genetic variation in human immunodeficiency virus type 2: identification of a unique variant from human plasma | AIDS Res. Hum. Retroviruses 13 (5), 401-404 (1997) | 3.42e-99 | 1 | |||||
| Brennan (2016) | Identification of HIV-1 Non-B Subtypes and Antiretroviral Drug Resistant Strains in United States Blood Donors | Unpublished | 5.09e-145 | 3 | Unpublished | ||||
| Brockman (2010) | Early Selection in Gag by Protective HLA Alleles Contributes to Reduced HIV-1 Replication Capacity That May Be Largely Compensated for in Chronic Infection | J. Virol. 84 (22), 11937-11949 (2010) | 6.09e-170 | 66 | 66 | Naive | Plasma | Direct PCR | HLA |
| Brooks (2020) | HIV-1 variants are archived throughout infection and persist in the reservoir | PLoS Pathog. 16 (6), e1008378 (2020) | 1.11e-148 | 186 | 13 | Mixed | PBMC | SGS | Reservoir |
| Brown (2016) | Biologic and genetic characterization of a panel of 60 human immunodeficiency virus type 1 isolates, representing clades A, B, C, D, CRF01_AE, and CRF02_AG, for the development and assessment of candidate vaccines | J. Virol. 79 (10), 6089-6101 (2005) | 1.99e-153 | 21 | |||||
| Brumme (2010) | Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and their association with viral load in chronic untreated infection | AIDS 22 (11), 1277-1286 (2008) | 2.09e-170 | 567 | 567 | Naive | Plasma | Direct PCR | HLA |
| Brumme (2016) | HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins | PLoS ONE 4 (8), E6687 (2009) | 3.61e-170 | 507 | 507 | Naive | Plasma | Direct PCR | HLA |
| Bruner (2016) | Defective proviruses rapidly accumulate during acute HIV-1 infection | Nat. Med. 22 (9), 1043-1049 (2016) | 4.52e-171 | 191 | 21 | ART | PBMC | SGS | Reservoir |
| Bruselles (2016) | Use of massive parallel pyrosequencing for near full-length characterization of a unique HIV Type 1 BF recombinant associated with a fatal primary infection | AIDS Res. Hum. Retroviruses 25 (9), 937-942 (2009) | 4.26e-146 | 1 | |||||
| Buckheit (2012) | Host factors dictate control of viral replication in two HIV-1 controller/chronic progressor transmission pairs | Nat Commun 3, 716 (2012) | 2.1e-153 | 4 | |||||
| Buckheit (2013) | Infection with defective virus results in different clinical outcomes of infection in three HIV-1 infected individuals | Unpublished | 2.57e-149 | 2 | Unpublished | ||||
| Buckheit (2014) | Long-Term Control of Viral Replication in a Group O, Human Immunodeficiency Virus Type 1-Infected Individual | AIDS Res. Hum. Retroviruses 30 (6), 511-513 (2014) | 4.38e-120 | 1 | |||||
| Buggert (2012) | Characterization of HIV-Specific CD4+ T Cell Responses against Peptides Selected with Broad Population and Pathogen Coverage | PLoS ONE 7 (7), E39874 (2012) | 1.95e-172 | 36 | 36 | Mixed | Plasma; PBMC | Direct PCR | HLA |
| Bui (2016) | Proviruses with Identical Sequences Comprise a Large Fraction of the Replication-Competent HIV Reservoir | PLoS Pathog. 2017 Mar 22;13(3):e1006283 | 1.01e-158 | 399 | 8 | ART | QVOA | SGS | Reservoir |
| Bull (2021) | Direct Submission | Submitted (17-DEC-2019) Center for Global Infectio | 1.28e-150 | 3 | Unpublished | ||||
| Buonaguro (2006) | Screening of HIV-1 isolates by reverse heteroduplex mobility assay and identification of non-B subtypes in Italy | J. Acquir. Immune Defic. Syndr. 37 (2), 1295-1306 | 1.39e-146 | 3 | |||||
| Buranapraditkun (2011) | Viral Escape from a Novel Immunodominant HLA-Cw*0102-Restricted Gag Epitope in HIV-1 Clade A/E Infection | PLoS One. 2011;6(8):e23603. | 7.87e-161 | 100 | 100 | Naive | Plasma | Direct PCR | HLA |
| Caetano (2018) | Next generation sequencing analyses of the emergence and maintenance of mutations in ctl epitopes in HIV controllers with differential control of viremia | Unpublished | 1.28e-169 | 21 | Unpublished | ||||
| Caetano (2019) | A case report of HIV-1 superinfection in an HIV controller leading to loss of viremia control: a retrospective of 10 years of follow-up | BMC Infect. Dis. 19 (1), 588 (2019) | 4.25e-151 | 1 | |||||
| Cale (2020) | Neutralizing antibody VRC01 failed to select for HIV-1 mutations upon viral rebound | J. Clin. Invest. (2020) In press | 9.45e-152 | 114 | 18 | ART | Plasma | Uncertain | Reservoir |
| Cali (2016) | Evidence for host-driven selection of the HIV type 1 vpr gene in vivo during HIV disease progression in a transfusion-acquired cohort | AIDS Res. Hum. Retroviruses 21 (8), 728-733 (2005) | 3.42e-154 | 15 | |||||
| Calugi (2006) | Entire genome of a strain of human immunodeficiency virus type 1 with a deletion of nef that was recovered 20 years after primary infection: large pool of proviruses with deletions of env | J. Virol. 80 (23), 11892-11896 (2006) | 8.92e-148 | 1 | |||||
| Campbell (2016) | Viral linkage in HIV-1 seroconverters and their partners in an HIV-1 prevention clinical trial | PLoS ONE 6 (3), E16986 (2011) | 1.94e-156 | 237 | 151 | Uncertain | Plasma | Molecular clones; SGS; NGS | Molecular epidemiology |
| Canada (2021) | Identification of a New HIV-1 BC Intersubtype Circulating Recombinant Form (CRF108_BC) in Spain | Viruses 13 (1), 93 (2021) | 1.79e-150 | 7 | Unpublished | ||||
| Canada (2022) | Viruses previously identified in Brazil as belonging to circulating recombinant form (CRF) 72_BF represent two closely related CRFs, one of which is also circulating in Spain | Front Microbiol (2022) In press | 1.32e-144 | 3 | |||||
| Candotti (2005) | AIDS in an HIV-seronegative Ghanaian woman with intersubtype A/G recombinant HIV-1 infection | J. Med. Virol. 62 (1), 1-8 (2000) | 1.72e-144 | 1 | |||||
| Cao (2023) | Using molecular network analysis to understand current HIV-1 transmission characteristics in an inland area of Yunnan, China | Epidemiol Infect, 1-31 (2023) In press | 6.69e-149 | 372 | |||||
| Capel (2012) | Evolution of the human immunodeficiency virus type 1 protease: effects on viral replication capacity and protease robustness | J. Gen. Virol. 93 (PT 12), 2625-2634 (2012) | 1.99e-168 | 81 | 161 | Mixed | Plasma | Direct PCR | Miscellaneous |
| Capoferri (2020) | Recombination analysis of near full-length HIV-1 sequences and the identification of a potential new Circulating Recombinant Form from Rakai, Uganda | AIDS Res. Hum. Retroviruses (2020) In press | 2.04e-154 | 274 | 275 | Naive | Plasma | Direct PCR; NGS | Molecular epidemiology |
| Capoferri (2025) | In vivo detection of HIV-1 antisense transcripts in untreated and ART-treated individuals | Unpublished | 1.01e-168 | 4 | |||||
| Carlson (2012) | HIV transmission. Selection bias at the heterosexual HIV-1 transmission bottleneck | Science 345 (6193), 1254031 (2014) | 9.05e-164 | 1015 | 137 | Naive | Plasma | Direct PCR | HLA;Acute infection |
| Carlson (2016) | Transmitted and de novo cellular immune escape drive HIV-1 disease progression | Nat Med. 2016 Jun;22(6):606-13. | 3.52e-166 | 169 | 169 | Naive | Plasma | Direct PCR | HLA |
| Carr (1996) | Full-length sequence and mosaic structure of a human immunodeficiency virus type 1 isolate from Thailand | J. Virol. 70 (9), 5935-5943 (1996) | 2.07e-144 | 1 | |||||
| Carr (1999) | HIV-1 isolate VI354 from Gabon, complete genome | Unpublished | 6.66e-143 | 1 | Unpublished | ||||
| Carr (1999) | Subtype A strain of HIV-1 from Uganda | Unpublished | 2.56e-149 | 1 | Unpublished | ||||
| Carr (1999) | Direct Submission | Submitted (07-JUL-1998) Molecular Epidemiology, He | 1.11e-145 | 1 | Unpublished | ||||
| Carr (2000) | Characterization of subtype A HIV-1 from Africa by full genome sequencing | AIDS 13 (14), 1819-1826 (1999) | 1.4e-145 | 7 | |||||
| Carr (2013) | HIV-1 recombinants with multiple parental strains in low-prevalence, remote regions of Cameroon: evolutionary relics? | Retrovirology 7, 39 (2010) | 2.91e-150 | 24 | |||||
| Carr (2014) | Diverse BF recombinants have spread widely since the introduction of HIV-1 into South America | AIDS 15 (15), F41-F47 (2001) | 5e-153 | 21 | |||||
| Carr (2016) | The AG recombinant IbNG and novel strains of group M HIV-1 are common in Cameroon | Virology 286 (1), 168-181 (2001) | 4.45e-148 | 7 | |||||
| Carr (2016) | High Genetic Complexity of HIV-1 in low-prevalence, rural regions of Cameroon | Unpublished | 2.87e-145 | 2 | Unpublished | ||||
| Carr (2016) | Full genome sequences of human immunodeficiency virus type 1 subtypes G and A/G intersubtype recombinants | Virology 247 (1), 22-31 (1998) | 3.81e-145 | 3 | |||||
| Carr (2016) | HIV-1 isolate SE8603 from Uganda, complete genome | Unpublished | 2.82e-146 | 1 | Unpublished | ||||
| Carr (2016) | HIV Subtype and Drug Resistance Patterns among Drug Naive Persons in Jos, Nigeria | Unpublished | 7.78e-146 | 7 | Unpublished | ||||
| Carr (2016) | Outbreak of a West African recombinant of HIV-1 in Tashkent, Uzbekistan | J. Acquir. Immune Defic. Syndr. 39 (5), 570-575 (2 | 4.8e-146 | 12 | |||||
| Carr (2016) | Identification of CRF17_BF in Four South American Countries | Unpublished | 5.19e-147 | 6 | Unpublished | ||||
| Carr (2016) | Isolation of a simian immunodeficiency virus from a malbrouck (Chlorocebus cynosuros) | Arch. Virol. (2016) In press | 4.14e-97 | 1 | |||||
| Carrion (2016) | Circulating Recombinant Form CRF02_AG in South America | AIDS Res. Hum. Retroviruses 19 (4), 329-332 (2003) | 8.76e-148 | 2 | Unpublished | ||||
| Carrion (2016) | Documentation of subtype C HIV Type 1 strains in Argentina, Paraguay, and Uruguay | AIDS Res. Hum. Retroviruses 20 (9), 1022-1025 (200 | 1.15e-147 | 2 | |||||
| Casado (2019) | Direct Submission | Submitted (09-JUN-2019) Servicio Virologia Molecul | 3.67e-154 | 1 | Unpublished | ||||
| Casado (2005) | Direct Submission | Submitted (18-JAN-2005) Patogenia Viral, Instituto | 6.91e-148 | 1 | Unpublished | ||||
| Casado (2016) | Near full-length genome characterization of an HIV type 1 CRF05_DF virus from Spain | AIDS Res. Hum. Retroviruses 19 (8), 719-725 (2003) | 4.36e-150 | 1 | |||||
| Casado (2016) | Identification of a novel HIV-1 circulating ADG intersubtype recombinant form (CRF19_cpx) in Cuba | J. Acquir. Immune Defic. Syndr. 40 (5), 532-537 (2 | 4.18e-149 | 2 | |||||
| Cevallos (2017) | An updated genomic characterization and molecular evolution analysis of BF recombinant HIV-1 strains among Argentinean men-who-have-sex with men reveals a complex scenario | Unpublished | 1.67e-155 | 15 | Unpublished | ||||
| Chakrabarti (2016) | Sequence of simian immunodeficiency virus from macaque and its relationship to other human and simian retroviruses | Nature 328 (6130), 543-547 (1987) | 1.88e-98 | 1 | |||||
| Cham (2016) | Study of HIV type 1 gag/env variability in The Gambia, using a multiplex DNA polymerase chain reaction | AIDS Res. Hum. Retroviruses 16 (17), 1915-1919 (20 | 2e-158 | 1 | |||||
| Chang (2015) | HIV-infected sex workers with beneficial HLA-variants are potential hubs for selection of HIV-1 recombinants that may affect disease progression | Sci Rep 5, 11253 (2015) | 1.64e-168 | 520 | 113 | Naive | PBMC | Direct PCR; SGS | HLA |
| Chang (2019) | Molecular epidemiology of a primarily MSM acute HIV-1 cohort in Bangkok, Thailand and connections within networks of transmission in Asia | J Int AIDS Soc 21 (11), e25204 (2018) | 1.06e-155 | 127 | 127 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Chang (2006) | Molecular Epidemiology of HIV Type 1 Subtypes in Taiwan: Outbreak of HIV Type 1 CRF07)BC Infection in Intravenous Drug Users | AIDS Res. Hum. Retroviruses 22 (11), 1055-1066 (20 | 4.46e-151 | 18 | |||||
| Chang (2014) | Slow Immunologic Progression in Injecting Drug Users Infected with Human Immunodeficiency Virus Type 1 CRF07_BC | Unpublished | 9.39e-145 | 1 | Unpublished | ||||
| Chang (2000) | Differential stability of the mRNA secondary structures in the frameshift site of various HIV type 1 viruses | AIDS Res. Hum. Retroviruses 15 (17), 1591-1596 (19 | 3.32e-140 | 5 | |||||
| Chang (2016) | Sequence features downstream of the primer-binding site of HIV type 1 subtype E shared by subtype G and a subset of subtype A | AIDS Res. Hum. Retroviruses 15 (18), 1703-1706 (19 | 7.57e-140 | 1 | |||||
| Chang (2020) | HIV-1 genetic diversity and recombinant forms among men who have sex with men at a sentinel surveillance site in Xi'an City, China | Infect. Genet. Evol. 81, 104257 (2020) | 1.08e-155 | 56 | 56 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Chang (2023) | Identification of a newly emerging HIV-1 Second-Generation Recombinants (CRF01_AE/CRF07_BC) among Men Who Have Sex with Men in Yunnan, China | Unpublished | 5.37e-143 | 3 | |||||
| Chang (2025) | Identification of two novel HIV-1 circulating recombinant forms, CRF190_BC and CRF191_BC, in southeastern Yunnan Province | Unpublished | 8.54e-149 | 12 | |||||
| Charurat (2012) | Characterization of Acute HIV-1 Infection in High-Risk Nigerian Populations | J. Infect. Dis. 205 (8), 1239-1247 (2012) | 2.51e-146 | 14 | |||||
| Chaturbhuj (2016) | The presence of gag cleavage site substitutions in HIV-1 subtype C infected patients failing on PI based ART regimen in India | Unpublished | 1.11e-162 | 21 | Unpublished | ||||
| Chaturbhuj (2020) | Gag mutations among PI-Naive and PI-experienced patients infected with HIV-1 subtype C from India | Unpublished | 5.18e-163 | 63 | Unpublished | ||||
| Chen (2016) | Near Full-Length Genomic Characterization of a Novel HIV Type 1 CRF07_ BC/CRF08_ BC Recombinant Strain from Yunnan, China | AIDS Res. Hum. Retroviruses 27 (6), 693-699 (2011) | 1.1e-145 | 1 | |||||
| Chen (2024) | Identification of two evolutionarily related HIV-1 circulating recombinant forms (CRF149_01B and CRF150_cpx) among men who have sex with men in China | Unpublished | 5.69e-142 | 4 | |||||
| Chen (2024) | Preplanned Studies: Characterization of a New HIV-1 Circulating Recombinant Form CRF142_BC - Yunnan, China, 2015 and 2021 | China CDC Wkly 6 (42), 1080-1085 (2024) | 3.87e-148 | 5 | |||||
| Chen (2025) | Identification of a Novel Second-Generation HIV-1 Circulating Recombinant Form (CRF174_0708) Arising from CRF07_BC and CRF08_BC in Yunnan, China | AIDS Res Hum Retroviruses (2025) In press | 5.03e-146 | 7 | |||||
| Chen (2015) | The Combination of Phylogenetic Analysis with Epidemiological and Serological Data to Track HIV-1 Transmission in a Sexual Transmission Case | PLoS ONE 10 (3), E0119989 (2015) | 1.94e-147 | 21 | |||||
| Chen (2023) | Identification of a new HIV-1 second-generation circulating recombinant form (CRF134_0185) in Yunnan, China | J Infect (2023) In press | 4.2e-145 | 6 | |||||
| Chen (2024) | Identification of a newly emerging second-generation HIV-1 circulating recombinant form (CRF145_0755) among men who have sex with men in China | J Infect, 106126 (2024) In press | 2.55e-142 | 10 | |||||
| Chen (2024) | Identification of a complex second-generation HIV-1 circulating recombinant form (CRF158_0107) among men who have sex with men in China | J Infect 89 (3), 106230 (2024) | 6.82e-143 | 4 | |||||
| Chen (2025) | Identification of a long-standing HIV-1 circulating recombinant form (CRF178_BC) in different high-risk populations along the China-Myanmar border region | J Infect 90 (4), 106477 (2025) | 2.34e-144 | 4 | |||||
| Chen (2025) | Characterization of the first unambiguous HIV-1 CRF07_BC/CRF08_BC circulating recombinant form (CRF160_0708) in Yunnan, China | J Infect 90 (2), 106383 (2025) | 1.33e-144 | 6 | |||||
| Chen (2017) | First description of two new HIV-1 recombinant forms CRF82_cpx and CRF83_cpx among drug users in Northern Myanmar | Virulence (2016) In press | 1.39e-151 | 31 | 31 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Chen (2020) | Laos is Affected by HIV CRF01_AE and the Newly Identified CRF97_01B | Virol Sin (2020) In press | 1.93e-152 | 61 | 61 | Uncertain | PBMC | Direct PCR | Molecular epidemiology |
| Chen (2018) | Increased predominance of HIV-1 CRF01_AE and its recombinants in Philippines | Unpublished | 2.89e-151 | 23 | Unpublished | ||||
| Chen (2017) | Fast Dissemination of New HIV-1 CRF02/A1 Recombinants in Pakistan | PLoS ONE 11 (12), E0167839 (2016) | 1.59e-146 | 34 | 34 | Naive | Cultured PBMC | Direct PCR; NGS | Molecular epidemiology |
| Chen (2021) | Analyses of near full-length HIV-1 genome sequences from Vietnam | Unpublished | 4.59e-151 | 36 | Unpublished | ||||
| Chen (2015) | Comprehensive Characterization of the Transmitted/founder env Genes from a Single MSM Cohort in China | J. Acquir. Immune Defic. Syndr. (2015) In press | 7.58e-145 | 23 | |||||
| Chen (2016) | Genetic characterization of new West African simian immunodeficiency virus SIVsm: geographic clustering of household-derived SIV strains with human immunodeficiency virus type 2 subtypes and genetically diverse viruses from a single feral sooty mangabey troop | J. Virol. 70 (6), 3617-3627 (1996) | 8.25e-100 | 1 | |||||
| Cheng (2020) | Identification of a Novel HIV-1 Unique CRF01_AE/C Recombinant in Yan'an City, Shaanxi Province | AIDS Res. Hum. Retroviruses (2020) In press | 3.24e-143 | 1 | Unpublished | ||||
| Cheong (2014) | Cross-Border Sexual Transmission of the Newly Emerging HIV-1 Clade CRF51_01B | PLoS ONE 9 (10), E111236 (2014) | 3.46e-153 | 2 | |||||
| Cheong (2015) | Genetic Characterization of a Novel HIV-1 Circulating Recombinant Form (CRF74_01B) Identified among Intravenous Drug Users in Malaysia: Recombination History and Phylogenetic Linkage with Previously Defined Recombinant Lineages | PLoS ONE 10 (7), E0133883 (2015) | 8.7e-149 | 6 | |||||
| Cheong (2015) | Genome Sequence of Complex HIV-1 Unique Recombinant Forms Sharing a Common Recombination Breakpoint Identified in Malaysia | Genome Announc 3 (6), e01220-15 (2015) | 2.29e-146 | 3 | |||||
| Chikata (2013) | Host-specific adaptation of HIV-1 subtype B in the Japanese population | J Virol. 2014 May;88(9):4764-75. | 7.02e-170 | 397 | 396 | Naive | Plasma | Direct PCR | HLA |
| Chin (2016) | Genetic analysis of a UNAIDS HIV type 1 from Brazil revealed an unexpected recombination pattern | AIDS Res. Hum. Retroviruses 26 (12), 1261-1263 (20 | 4.17e-146 | 1 | |||||
| Chiu (2018) | Laboratory Validation of a Clinical Metagenomic Sequencing Assay for Pathogen Detection in Cerebrospinal Fluid | Unpublished | 4.1e-152 | 1 | Unpublished | ||||
| Chloe (2020) | Impact of hla-b*52:01-driven escape mutations on viral replicative capacity | J Virol. 2020 Jun 16;94(13):e02025-19. | 2.71e-169 | 140 | 140 | Naive | PBMC | Direct PCR | HLA |
| Cho (2023) | Longitudinal clonal dynamics of HIV-1 latent reservoirs measured by combination quadruplex polymerase chain reaction and sequencing | Proc Natl Acad Sci U S A 119 (4) (2022) | 2.31e-168 | 3843 | |||||
| Cho (2011) | Association of high frequency of gross deletions in the pol and 5' LTR/gag genes with Korean red ginseng intake in HIV-1 infected individuals | Unpublished | 1.31e-167 | 5 | Unpublished | ||||
| Cho (2012) | Phylogenetic Analysis of Near Full-Length Genomic Sequences of HIV-1 in 20 Long-Term Slow Progressors Treated with Korean Red Ginseng | Unpublished | 1.04e-161 | 1 | Unpublished | ||||
| Cho (2013) | Frequent genetic defects in long-term survivors for more than 26 years in the absence of antiretroviral therapy in Korea: its association with ginseng treatment | Unpublished | 2.43e-154 | 9 | Unpublished | ||||
| Cho (2014) | Near full-length sequences of HIV-1 in Korean Hemophiliacs infected with Korean subclade B | Unpublished | 1.54e-155 | 23 | Unpublished | ||||
| Cho (2018) | High frequency of genetic defects in long term slow progressors infected with HIV-1 | Unpublished | 5.23e-149 | 4 | Unpublished | ||||
| Cho (2019) | Phylogenetic analysis of near full-length sequences from the earliest Korean Subclade B of HIV-1 | Unpublished | 7.08e-172 | 93 | Unpublished | ||||
| Cho (2019) | Genetic analysis for the full-length gag gene of the earliest Korean subclade B of HIV-1: Outbreak among Korean Hemophiliacs | Viruses. 2019 Jun 11;11(6):545. | 9.85e-170 | 178 | 110 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Cho (2019) | A long-term slow progressor reveals high proportion of genetic defects in HIV-1 | Unpublished | 2.71e-151 | 1 | Unpublished | ||||
| Cho (2021) | Changes in sequence length, the number of CpG, and coreceptor in env gene over 30 years in HIV-1 Korean subclade B infected patients | Unpublished | 9.52e-147 | 2 | |||||
| Cho (2021) | Significant correlations between the amount of Korean Red Ginseng (KRG) and sequence length in env gene, and the amount of KRG and CpG number | Unpublished | 6.79e-152 | 1 | |||||
| Cho (2023) | Origin of CRF16_A2D in Korea: the earliest transmission from Africa | Unpublished | 9.11e-159 | 4 | |||||
| Cho (2024) | Impact of combination of Korean Red Ginseng with integrase strand transfer inhibitor | Unpublished | 1.32e-148 | 2 | |||||
| Cho (2025) | The earliest CRF16 A2D transmission within local community in Korea | Unpublished | 7.29e-160 | 2 | |||||
| Cho (2013) | Complete sequence of HIV-1 in a Korean lon-term nonprogressor with HIV-1 infection | Taehan Pairosu Hakhoe Chi 29 (2), 107-118 (1999) | 3.44e-150 | 1 | |||||
| Cho (2019) | High frequency of gross deletions in the 5' LTR and gag regions in HIV type 1-infected long-term survivors treated with Korean red ginseng | AIDS Res. Hum. Retroviruses 24 (2), 181-193 (2008) | 6.28e-169 | 43 | 18 | Naive | PBMC | Direct PCR | Miscellaneous |
| Cho (2012) | Frequent Genetic Defects in the HIV-1 5' LTR/gag Gene in Hemophiliacs Treated with Korean Red Ginseng: Decreased Detection of Genetic Defects by Highly Active Antiretroviral Therapy | J Ginseng Res 35 (4), 413-420 (2011) | 8.46e-167 | 2 | |||||
| Cho (2013) | Phylogenetic Analysis of Near Full-Length HIV Type 1 Genomic Sequences from 21 Korean Individuals | AIDS Res. Hum. Retroviruses 29 (4), 738-743 (2013) | 3.62e-155 | 21 | |||||
| Cho (2013) | Full sequence of HIV type 1 Korean subtype B in an AIDS case with atypical seroconversion: TAAAA at TATA box | AIDS Res. Hum. Retroviruses 21 (11), 961-964 (2005 | 1.15e-150 | 1 | |||||
| Cho (2016) | High frequency of gross deletions in 5' LTR/gag and nef genes in patients infected with CRF02_AG of HIV type 1 who survived for over 20 years: an association with Korean red ginseng | AIDS Res. Hum. Retroviruses 25 (5), 535-541 (2009) | 6.89e-155 | 3 | |||||
| Cho (2016) | High frequency of grossly deleted nef genes in HIV-1 infected long-term slow progressors treated with Korean red ginseng | Curr. HIV Res. 4 (4), 447-457 (2006) | 1.34e-152 | 1 | |||||
| Cho (2019) | Signature pattern analysis for the full-length env gene of the earliest Korean subclade B of HIV-1: outbreak among Korean hemophiliacs | Virus Genes 53 (6), 789-796 (2017) | 1.65e-154 | 1 | |||||
| Cho (2021) | Sequence Length of HIV-1 Subtype B Increases over Time: Analysis of a Cohort of Patients with Hemophilia over 30 Years | Viruses 13 (5), 806 (2021) | 4.44e-170 | 31 | 31 | Naive | Plasma; PBMC | Direct PCR | Molecular epidemiology |
| Choi (2016) | HIV type 1 isolate Z321, the strain used to make a therapeutic HIV type 1 immunogen, is intersubtype recombinant | AIDS Res. Hum. Retroviruses 13 (4), 357-361 (1997) | 2.36e-143 | 1 | |||||
| Choi (2022) | Near full-length sequence of HIV from Korea HIV/AIDS cohort | Unpublished | 3.38e-153 | 14 | |||||
| Chomont (2022) | HIV rapidly targets a diverse pool of CD4+ T cells to establish productive and latent infections | Unpublished | 5.91e-161 | 178 | |||||
| Chopera (2011) | Virological and Immunological Factors Associated with HIV-1 Differential Disease Progression in HLA-B*58:01-Positive Individuals | J. Virol. 85 (14), 7070-7080 (2011) | 5.99e-163 | 476 | 6 | Naive | Plasma | SGS | HLA |
| Chopera (2013) | No Evidence for Selection of HIV-1 with Enhanced Gag-Protease or Nef Function among Breakthrough Infections in the CAPRISA 004 Tenofovir Microbicide Trial | PLoS ONE 8 (8), E71758 (2013) | 4.63e-163 | 77 | 83 | Mixed | Plasma | Direct PCR | Miscellaneous |
| Chopera (2016) | Transmission of HIV-1 CTL escape variants provides HLA-mismatched recipients with a survival advantage | PLoS Pathog. 4 (3), E1000033 (2008) | 7.9e-165 | 306 | 24 | Naive | Plasma | SGS | HLA |
| Chow (2012) | Genome Sequences of a Novel HIV-1 CRF53_01B Identified in Malaysia | J. Virol. 86 (20), 11398-11399 (2012) | 1.86e-143 | 3 | |||||
| Chow (2014) | A Newly Emerging HIV-1 Recombinant Lineage (CRF58_01B) Disseminating among People Who Inject Drugs in Malaysia | PLoS ONE 9 (1), E85250 (2014) | 1.25e-145 | 6 | |||||
| Chow (2014) | Genome Sequence of a Complex HIV-1 Unique Recombinant Form Involving CRF01_AE, Subtype B, and Subtype B' Identified in Malaysia | Genome Announc 2 (2), e00139-14 (2014) | 1.09e-139 | 1 | |||||
| Claiborne (2015) | Replicative fitness of transmitted HIV-1 drives acute immune activation, proviral load in memory CD4+ T cells, and disease progression | Proc. Natl. Acad. Sci. U.S.A. 112 (12), E1480-E148 | 4.18e-163 | 127 | 6 | Naive | PBMC | Uncertain | Acute infection |
| Clavel (2005) | Molecular cloning and polymorphism of the human immune deficiency virus type 2 | Nature 324 (6098), 691-695 (1986) | 1.54e-103 | 2 | |||||
| Cloyd (2016) | Spectrum of biological properties of human immunodeficiency virus (HIV-1) isolates | Virology 174 (1), 103-116 (1990) | 1.01e-155 | 2 | |||||
| Coetzer (2017) | Gp41 and Gag amino acids linked to HIV-1 protease inhibitor-based second-line failure in HIV-1 subtype A from Western Kenya | J Int AIDS Soc 20 (3) (2017) | 3.73e-158 | 13 | |||||
| Colby (2019) | Ad26, MVA vaccines in acutely treated HIV: Safety, immunogenicity and effect on viral rebound | Nat Med. 2020 Apr;26(4):498-501. | 1.74e-152 | 81 | 26 | ART | Plasma | Direct PCR; SGS | Reservoir |
| Colby (2018) | Rapid HIV RNA rebound after antiretroviral treatment interruption in persons durably suppressed in Fiebig I acute HIV infection | Nat. Med. (2018) In press | 1.86e-147 | 40 | 8 | ART | Plasma | Direct PCR | Reservoir |
| Cole (2021) | In-depth characterization of HIV-1 reservoirs reveals links to viral rebound during treatment interruption | Cell Rep. 2022 Apr 26;39(4):110739. | 3.61e-167 | 273 | 9 | ART | Plasma; PBMC | SGS | Reservoir |
| Cole (2021) | In-depth single-cell analysis of translation-competent HIV-1 reservoirs identifies cellular sources of plasma viremia | Nat Commun (2021) In press | 2.68e-160 | 93 | 8 | ART | PBMC | SGS | Reservoir |
| Cole (2022) | In-depth characterization of HIV-1 reservoirs reveals links to viral rebound during treatment interruption | Unpublished | 4.42e-156 | 105 | |||||
| Coleman (2004) | HIV-1 p24 vaccine protects cats against FIV | Unpublished | 1.01e-165 | 1 | Unpublished | ||||
| Collin (2024) | Rapid Selection of HIV-2 Capsid Mutations After Failure of a Lenacapavir-Containing Regimen | Unpublished | 1.43e-106 | 31 | |||||
| Collins (2021) | Functional impairment of HIV-specific CD8+ T cells precedes aborted control of viremia | Unpublished | 4.44e-155 | 17 | Unpublished | ||||
| Collman (2000) | V3-independent determinants of macrophage tropism in a primary human immunodeficiency virus type 1 isolate | J Virol. 1995 Mar;69(3):1755-61. | 4.1e-153 | 1 | |||||
| Colson (2014) | HIV infection en route to endogenization: two cases | Clin. Microbiol. Infect. (2014) In press | 7.15e-160 | 5 | |||||
| Colson (2025) | Direct Submission | Submitted (06-JUL-2025) MEPHI, IHU Mediterranee In | 2.14e-166 | 16 | |||||
| Corbet (2016) | env sequences of simian immunodeficiency viruses from chimpanzees in Cameroon are strongly related to those of human immunodeficiency virus group N from the same geographic area | J. Virol. 74 (1), 529-534 (2000) | 3.48e-136 | 1 | |||||
| Cornelissen (2016) | Spread of distinct human immunodeficiency virus type 1 AG recombinant lineages in Africa | J. Gen. Virol. 81 (Pt 2), 515-523 (2000) | 5.94e-156 | 19 | |||||
| Cotton (2014) | Genotypic and Functional Impact of HIV-1 Adaptation to Its Host Population during the North American Epidemic | PLoS Genet. 10 (4), E1004295 (2014) | 2.11e-170 | 299 | 299 | Naive | Plasma | Direct PCR | HLA |
| Courgnaud (1996) | Genetic differences accounting for evolution and pathogenicity of simian immunodeficiency virus from a sooty mangabey monkey after cross-species transmission to a pig-tailed macaque | J. Virol. 66 (1), 414-419 (1992) | 1.34e-101 | 2 | |||||
| Courgnaud (2016) | Characterization of a novel simian immunodeficiency virus from guereza colobus monkeys (Colobus guereza) in Cameroon: a new lineage in the nonhuman primate lentivirus family | J. Virol. 75 (2), 857-866 (2001) | 1.64e-69 | 1 | |||||
| Courgnaud (2016) | Characterization of a novel simian immunodeficiency virus with a vpu gene from greater spot-nosed monkeys (Cercopithecus nictitans) provides new insights into simian/human immunodeficiency virus phylogeny | J. Virol. 76 (16), 8298-8309 (2002) | 2.45e-96 | 2 | |||||
| Courgnaud (2016) | Identification of a new simian immunodeficiency virus lineage with a vpu gene present among different cercopithecus monkeys (C. mona, C. cephus, and C. nictitans) from Cameroon | J. Virol. 77 (23), 12523-12534 (2003) | 1.38e-93 | 2 | |||||
| Couto-Fernandez (2016) | Phylogenetic analysis of Brazilian HIV type 1 subtype D strains: tracing the origin of this subtype in Brazil | AIDS Res. Hum. Retroviruses 22 (2), 207-211 (2006) | 3.45e-164 | 5 | |||||
| Cuevas (2015) | Extremely High Mutation Rate of HIV-1 In Vivo | PLoS Biol. 13 (9), E1002251 (2015) | 7.75e-156 | 11 | |||||
| Cuevas (2015) | Direct Submission | Submitted (13-JUL-2015) Unidad de Biologia y Varia | 3.11e-153 | 18 | Unpublished | ||||
| Cuevas (2016) | Short Communication: Biological and Genetic Characterization of HIV Type 1 Subtype B and Nonsubtype B Transmitted Viruses: Usefulness for Vaccine Candidate Assessment | AIDS Res. Hum. Retroviruses 26 (9), 1019-1025 (201 | 5.2e-154 | 14 | |||||
| Cuevas (2016) | Biological and genetic characterization of HIV-1 subtype B and non subtype-B transmitted viruses: usefulness for vaccine candidate assessment | AIDS Res. Hum. Retroviruses (2010) In press | 2.2e-152 | 14 | Unpublished | ||||
| Cuevas (2016) | High HIV-1 genetic diversity in Cuba | AIDS 16 (12), 1643-1653 (2002) | 5.94e-150 | 2 | |||||
| Cuevas (2016) | Direct Submission | Submitted (09-FEB-2016) Unidad de Biologia y Varia | 9.49e-154 | 31 | Unpublished | ||||
| Cummins (2017) | Extensive virologic and immunologic characterization in an HIV-infected individual following allogeneic stem cell transplant and analytic cessation of antiretroviral therapy: A case study | PLoS Med. 14 (11), e1002461 (2017) | 3e-151 | 6 | |||||
| Currier (2006) | CTL epitope distribution patterns in the Gag and Nef proteins of HIV-1 from subtype A infected subjects in Kenya: use of multiple peptide sets increases the detectable breadth of the CTL response | BMC Immunol. 7, 8 (2006) | 2.54e-163 | 36 | 36 | Naive | PBMC | Molecular clones | HLA |
| Currier (2016) | Immunodominance and cross-reactivity of B5703-restricted CD8 T lymphocytes from HIV type 1 subtype C-infected Ethiopians | AIDS Res. Hum. Retroviruses 21 (3), 239-245 (2005) | 1.18e-157 | 23 | |||||
| D'arc (2015) | Origin of the HIV-1 group O epidemic in western lowland gorillas | Proc. Natl. Acad. Sci. U.S.A. (2015) In press | 2.46e-128 | 4 | |||||
| D'Arrigo (2016) | gp41 sequence variability in HIV type 1 non-B subtypes infected patients undergoing enfuvirtide pressure | AIDS Res. Hum. Retroviruses 23 (10), 1296-1302 (20 | 6.43e-162 | 2 | |||||
| da Silva (2022) | Identification of a new circulating recombinant form of human immunodeficiency virus type 1, CRF124_cpx involving subtypes A, G, H, and CRF27_cpx in Angola | Front Microbiol (2022) In press | 2.14e-144 | 5 | |||||
| Dam (2016) | Gag mutations strongly contribute to HIV-1 resistance to protease inhibitors in highly drug-experienced patients besides compensating for fitness loss | PLoS Pathog. 5 (3), E1000345 (2009) | 6.94e-164 | 6 | |||||
| Damilano (2017) | Comparison of avidity in CTL/gag epitopes among patients with acute and chronic HIV-1 infection | Vaccine. 2018 Jun 27;36(28):4142-4151 | 4.2e-170 | 159 | 16 | Naive | Plasma; PBMC | Direct PCR; NGS | HLA |
| Damilano (2019) | Post-transmission analysis of viral readaptation in Argentine patients with acute HIV-1 infection | Infect Genet Evol. 2020 Jul;81:104207. | 3.48e-170 | 570 | 17 | Naive | Plasma | SGS | Acute infection |
| Damond (2016) | Identification of a highly divergent HIV type 2 and proposal for a change in HIV type 2 classification | AIDS Res. Hum. Retroviruses 20 (6), 666-672 (2004) | 3.37e-102 | 1 | |||||
| Dapp (2017) | Patterns and rates of viral evolution in HIV-1 subtype B infected females and males | PLoS ONE 12 (10), E0182443 (2017) | 1.34e-169 | 1783 | 8 | Naive | Plasma | SGS | Acute infection |
| Dash (2016) | Exceptional molecular and coreceptor-requirement properties of molecular clones isolated from an Human Immunodeficiency Virus Type-1 subtype C infection | Retrovirology 5, 25 (2008) | 1.71e-142 | 1 | |||||
| Datir (2020) | In Vivo Emergence of a Novel Protease Inhibitor Resistance Signature in HIV-1 Matrix | mBio (2020) In press | 6.97e-159 | 15 | Unpublished | ||||
| Dazza (2005) | Characterization of a novel vpu-harboring simian immunodeficiency virus from a Dent's Mona monkey (Cercopithecus mona denti) | J. Virol. 79 (13), 8560-8571 (2005) | 1.13e-99 | 1 | |||||
| de Goede (2013) | HIV-1 evolution in patients undergoing immunotherapy with Tat, Rev and Nef expressing dendritic cells followed by treatment interruption | AIDS. 2013 Nov 13;27(17):2679-89 | 6.07e-156 | 32 | 17 | Naive | Plasma | Direct PCR | Reservoir |
| de Oliveira (2016) | High frequency of BF mosaic genomes among HIV-1-infected children from Sao Paulo, Brazil | Arch. Virol. 153 (10), 1799-1806 (2008) | 4.43e-173 | 45 | 45 | Mixed | Plasma | Direct PCR | Molecular epidemiology |
| De Oliveira (2016) | Multiple HIV-1/m + HIV-1/o dual infections and new HIV-1/mo inter-group recombinant forms detected in Cameroon | Unpublished | 1.71e-145 | 2 | Unpublished | ||||
| De Oliveira (2017) | HIV-1/MO recombinants detection in France: impact on diagnosis and therapeutic management | Unpublished | 8.34e-144 | 7 | Unpublished | ||||
| De Sa Filho (2016) | Identification of two HIV type 1 circulating recombinant forms in Brazil | AIDS Res. Hum. Retroviruses 22 (1), 1-13 (2006) | 2.16e-154 | 10 | |||||
| de Silva (2012) | Population dynamics of HIV-2 in rural Guinea-Bissau: comparison with HIV-1 and ongoing transmission at the heart of the epidemic | AIDS (2012) In press | 7.38e-116 | 42 | NonM, HIV2, SIV | ||||
| de Silva (2016) | HIV-1 subtype distribution in the Gambia and the significant presence of CRF49_cpx, a novel circulating recombinant form | Retrovirology 7 (1), 82 (2010) | 6.14e-161 | 6 | |||||
| de Silva (2018) | HLA-associated polymorphisms in the HIV-2 capsid highlight key differences between HIV-1 and HIV-2 immune adaptation | AIDS (2018) In press | 1.02e-164 | 56 | 56 | Naive | Plasma | Direct PCR | NonM, HIV2, SIV |
| Deacon (1995) | Genomic structure of an attenuated quasi species of HIV-1 from a blood transfusion donor and recipients | Science 270 (5238), 988-991 (1995) | 9.47e-148 | 1 | |||||
| deCamp (2018) | Sieve analysis of breakthrough HIV-1 sequences in HVTN 505 identifies vaccine pressure targeting the CD4 binding site of Env-gp120 | PLoS ONE 12 (11), e0185959 (2017) | 3.27e-158 | 468 | 47 | Naive | Plasma | Direct PCR; SGS | Molecular epidemiology |
| Dehghani (2016) | Unique pattern of convergent envelope evolution in simian immunodeficiency virus-infected rapid progressor macaques: association with CD4-independent usage of CCR5 | J. Virol. 77 (11), 6405-6418 (2003) | 3.25e-98 | 2 | |||||
| Del Prete (2013) | Comparative Characterization of Transfection- and Infection-Derived SIV Challenge Stocks for In Vivo Non-Human Primate Studies | J. Virol. (2013) In press | 3.77e-100 | 38 | NonM, HIV2, SIV | ||||
| Delatorre (2016) | Tracing the origin of a singular HIV-1 CRF45_cpx clade identified in Brazil | Infect. Genet. Evol. (2016) In press | 2.39e-154 | 9 | |||||
| Delaugerre (2014) | HIV-1 group N: travelling beyond Cameroon | Lancet 378 (9806), 1894 (2011) | 8.51e-131 | 1 | |||||
| Delgado (2013) | Direct Submission | Submitted (24-OCT-2012) Biology and Variability of | 4.48e-159 | 10 | Unpublished | ||||
| Delgado (2015) | Phylogeny and Phylogeography of a Recent HIV-1 Subtype F Outbreak among Men Who Have Sex with Men in Spain Deriving from a Cluster with a Wide Geographic Circulation in Western Europe | PLoS ONE 10 (11), E0143325 (2015) | 1.48e-148 | 16 | |||||
| Delgado (2016) | Analysis of HIV type 1 protease and reverse transcriptase sequences from Venezuela for drug resistance-associated mutations and subtype classification: a UNAIDS study | AIDS Res. Hum. Retroviruses 17 (8), 753-758 (2001) | 8.16e-131 | 1 | |||||
| Delgado (2016) | Identification of a new HIV type 1 BF intersubtype circulating recombinant form (CRF44_BF) in Chile | AIDS Res. Hum. Retroviruses 26 (7), 821-826 (2010) | 7.43e-149 | 1 | |||||
| Delgado (2016) | Identification of a newly characterized HIV-1 BG intersubtype circulating recombinant form in Galicia, Spain, which exhibits a pseudotype-like virion structure | J. Acquir. Immune Defic. Syndr. 29 (5), 536-543 (2 | 2.9e-145 | 9 | |||||
| Delgado (2017) | Near full-length genomes of HIV-1 isolate deposited at NIBSC | Unpublished | 3.89e-151 | 8 | Unpublished | ||||
| Delgado (2019) | Diverse HIV-1 non-subtype B clusters are spreading among men who have sex with men in Spain | Front Microbiol 10, 655 (2019) | 1.88e-145 | 5 | Unpublished | ||||
| Delgado (2021) | Identification of CRF89_BF, a new member of an HIV-1 circulating BF intersubtype recombinant form family widely spread in South America | Sci Rep 11 (1), 11442 (2021) | 7.49e-147 | 7 | |||||
| Delgado (2025) | Direct Submission | Submitted (02-JUL-2025) Centro Nacional de Microbi | 1.03e-150 | 8 | |||||
| Desai (2006) | Direct Submission | Submitted (30-AUG-2006) Neurovirology, National In | 2.83e-110 | 2 | Unpublished | ||||
| Desai (2016) | Molecular cloning and primary nucleotide sequence analysis of a distinct human immunodeficiency virus isolate reveal significant divergence in its genomic sequences | Proc. Natl. Acad. Sci. U.S.A. 83 (21), 8380-8384 ( | 4.09e-154 | 1 | |||||
| Dewhurst (1993) | Sequence analysis and acute pathogenicity of molecularly cloned SIVSMM-PBj14 | Nature 345 (6276), 636-640 (1990) | 9.73e-98 | 2 | |||||
| Deymier (2015) | Heterosexual Transmission of Subtype C HIV-1 Selects Consensus-Like Variants without Increased Replicative Capacity or Interferon-alpha Resistance | PLoS Pathog. 11 (9), E1005154 (2015) | 6.88e-150 | 156 | 12 | Naive | Plasma | SGS | Acute infection |
| Dhummakupt (2025) | Direct Submission | Submitted (23-MAY-2025) Pediatric Infectious Disea | 1.89e-151 | 5 | |||||
| Diamond (2024) | No Antagonism or Cross Resistance and a High Barrier to the Emergence of Resistance In Vitro for the Combination of Islatravir and Lenacapavir | Antimicrob Agents Chemother (Bethesda) (2024) In p | 4.11e-170 | 333 | |||||
| Diamond (2024) | No Antagonism or Cross Resistance and a High Barrier to the Emergence of Resistance for the Combination of Islatravir and Lenacapavir | Antimicrob Agents Chemother (Bethesda) (2024) In p | 4.11e-170 | 63 | |||||
| Diaz (2016) | Selective regimes and evolutionary rates of HIV-1 subtype B V3 variants in the Brazilian epidemic | Virology 381 (2), 184-193 (2008) | 3.21e-152 | 6 | |||||
| Diaz (2025) | Direct Submission | Submitted (04-FEB-2025) Medicine, UNIFESP, Rua Ped | 7.45e-169 | 9 | |||||
| Dietrich (2006) | A highly divergent HIV-2-related isolate | Nature 342 (6252), 948-950 (1989) | 2.32e-103 | 1 | |||||
| Dietrich (2015) | Genetic Characterization of Near Full Length SIVdrl Genomes from Four Captive Drills (Mandrillus leucophaeus) | AIDS Res. Hum. Retroviruses 31 (3), 353-357 (2015) | 6.92e-100 | 4 | |||||
| Dilernia (2016) | HLA-driven Convergence of HIV-1 Viral Subtypes Toward the Adaptation to Immune Responses in Human Populations | PLoS One. 2008;3(10):e3429 | 3.61e-172 | 249 | 302 | Naive | Plasma | Direct PCR | HLA |
| Dong (2021) | First Detection of a Circulating Recombinant Form of HIV-1 CRF01_AE/08_BC (CRF105_0108) with Drug-Resistant Mutations in Sichuan, China | AIDS Res Hum Retroviruses 36 (7), 625-630 (2020) | 1.19e-146 | 4 | |||||
| Dong (2016) | Near Full-Length Genomic Characterization of a Novel HIV type 1 CRF01_AE/CRF07_BC Recombinant form Transmitted between a Heterosexual Couple in Guangxi, China | AIDS Res. Hum. Retroviruses (2016) In press | 2.13e-144 | 1 | |||||
| Dowling (2016) | Forty-one near full-length HIV-1 sequences from Kenya reveal an epidemic of subtype A and A-containing recombinants | AIDS 16 (13), 1809-1820 (2002) | 1.58e-152 | 41 | 41 | Naive | PBMC | Direct PCR | Molecular epidemiology |
| Dragoni (2023) | Proviral location affects cognate peptide-induced virus production and immune recognition of HIV-1-infected T cell clones | J Clin Invest (2023) In press | 3.56e-170 | 214 | |||||
| Duan (2025) | Identification of a novel HIV-1 circulating recombinant form in Henan, China | Unpublished | 1.11e-141 | 5 | |||||
| Dube (2023) | Spontaneous HIV expression in CD4+ T cells during suppressive ART is associated with the magnitude and function of HIV-specific CD4+ and CD8+ T cells | Unpublished | 3.11e-165 | 38 | |||||
| Duchet (2016) | gag and env sequences of an A/G/H recombinant from a Zairian HIV type 1 isolate | AIDS Res. Hum. Retroviruses 13 (15), 1351-1354 (19 | 5.37e-157 | 1 | |||||
| Dudek (2012) | Rapid Evolution of HIV-1 to Functional CD8+ T Cell Responses in Humanized BLT Mice | Sci Transl Med 4 (143), 143RA98 (2012) | 4.39e-172 | 62 | Miscellaneous | ||||
| Duette (2022) | Direct Submission | Submitted (14-DEC-2021) Centre for Virus Research, | 2.26e-171 | 174 | |||||
| Dufour (2022) | Single cell proviral sequencing reveals the phenotypic diversity of clonally expanded HIV reservoir cells during ART | Unpublished | 2.84e-169 | 526 | |||||
| Dufour (2022) | Near full length proviral sequencing in multiple anatomical compartments collected post-mortem reveals multiple clonal expansions shared among various deep tissues that persist during ART | Unpublished | 4.09e-171 | 342 | |||||
| Durali (2016) | Cross-reactions between the cytotoxic T-lymphocyte responses of human immunodeficiency virus-infected African and European patients | J. Virol. 72 (5), 3547-3553 (1998) | 4.13e-148 | 8 | |||||
| Durand (2016) | HIV-1 Gag evolution in recently infected human leukocyte antigen-B*57 patients with low-level viremia | AIDS 24 (15), 2405-2408 (2010) | 3.99e-167 | 67 | 5 | Naive | Plasma | Uncertain | HLA |
| Durkin (2020) | Pooled CRISPR Inverse PCR sequencing (PCIP-seq): simultaneous sequencing of viral insertion points and the integrated virus in thousands of cells with long reads | Unpublished | 2.63e-149 | 3 | Unpublished | ||||
| Eberle (2016) | Sequence of a HIV-1 Subtype F that is underquantified by Roche COBAS TaqMan and COBAS Amplicor Virus Load Tests | Unpublished | 1.03e-144 | 1 | Unpublished | ||||
| Eberle (2016) | Sequence of the gag gene of a HIV-1 Subtype A1 that is underquantified by Roche COBAS TaqMan | Unpublished | 5.63e-155 | 1 | Unpublished | ||||
| Edwards (2016) | Population genetic estimation of the loss of genetic diversity during horizontal transmission of HIV-1 | BMC Evol. Biol. 6, 28 (2006) | 9.65e-170 | 103 | 2 | Naive | Plasma | Molecular clones | Acute infection |
| Edwards (2016) | Intrapatient escape in the A*0201-restricted epitope SLYNTVATL drives evolution of human immunodeficiency virus type 1 at the population level | J. Virol. 79 (14), 9363-9366 (2005) | 5.01e-173 | 51 | 18 | Uncertain | Uncertain | Uncertain | HLA |
| Ekushov (2024) | Characterization of a new HIV-1 second-generation circulating recombinant form CRF173_63A6 in Jewish Autonomous Region of Russia | Unpublished | 3.78e-145 | 19 | |||||
| El Khalili (2025) | Direct Submission | Submitted (30-JAN-2025) Virology, Department of Ex | 4.53e-167 | 19 | |||||
| El Khalili (2025) | Development of a Next-Generation Sequencing Protocol for Assessing Lenacapavir Resistance in HIV-1 Capsid Gene | Unpublished | 1.04e-165 | 40 | |||||
| El-Badry (2020) | Better viral control despite higher CD4+ T cell activation during acute HIV-1 infection in Zambian women is linked to the sex hormone estradiol | J. Virol. (2020) In press | 1.15e-144 | 4 | Unpublished | ||||
| Engelbrecht (2001) | Genetic analysis of the complete gag and env genes of HIV type 1 subtype C primary isolates from South Africa | AIDS Res. Hum. Retroviruses 17 (16), 1533-1547 (20 | 3.61e-163 | 20 | |||||
| Engelbrecht (2018) | Near full-length HIV-1 subtype B sequences from the early South African epidemic, detecting a BD unique recombinant form from 1985 | Unpublished | 1.17e-154 | 5 | Unpublished | ||||
| English (2016) | Transmission of highly distinct HIV-1 variants from a single donor | Retrovirology. 2011 Jul 7;8:54 | 6.56e-157 | 79 | 3 | Naive | Plasma | SGS | Acute infection |
| Espinosa (2010) | Intersubtype BF recombinants of HIV-1 in a population of injecting drug users in Argentina | J. Acquir. Immune Defic. Syndr. 36 (1), 630-636 (2 | 3.96e-160 | 4 | |||||
| Espinosa (2016) | Intersubtype BF recombinants of HIV-1 in a population of injecting drug users in Argentina | J. Acquir. Immune Defic. Syndr. 36 (1), 630-636 (2 | 3.99e-156 | 12 | |||||
| Esteban (2021) | Full genome sequence of a Simian immunodeficiency virus infecting a western lowland gorilla (Gorilla gorilla gorilla) with high viral load in stools | Unpublished | 9.53e-125 | 1 | Unpublished | ||||
| Esteves (2016) | Full-length HIV-1 subtype G molecular clone | Unpublished | 5.36e-144 | 1 | Unpublished | ||||
| Etienne (2016) | Characterization of a new simian immunodeficiency virus strain in a naturally infected Pan troglodytes troglodytes chimpanzee with AIDS related symptoms | Retrovirology 8 (1), 4 (2011) | 9.45e-137 | 2 | |||||
| Etschel (2012) | HIV-1 mRNA electroporation of PBMC: A simple and efficient method to monitor T-cell responses against autologous HIV-1 in HIV-1-infected patients | J. Immunol. Methods 380 (1-2), 40-55 (2012) | 3.19e-166 | 5 | |||||
| Eyzaguirre (2011) | Molecular Epidemiology of Human Immunodeficiency Virus Infected Individuals in Uruguay | Unpublished | 1.21e-153 | 26 | Unpublished | ||||
| Eyzaguirre (2013) | Elevated hypermutation levels in HIV-1 natural viral suppressors | Virology 443 (2), 306-312 (2013) | 5.29e-156 | 46 | 46 | Naive | PBMC | SGS | Reservoir |
| Eyzaguirre (2016) | Genetic characterization of HIV-1 strains circulating in Kazakhstan | J. Acquir. Immune Defic. Syndr. 46 (1), 19-23 (200 | 2.68e-144 | 6 | |||||
| Fan (2023) | Direct Submission | Submitted (04-JUL-2022) Department of HIV/AIDS Con | 3.75e-141 | 1 | |||||
| Fan (2023) | Direct Submission | Submitted (02-FEB-2023) Clinical Laboratory, The P | 3.79e-140 | 1 | |||||
| Fan (2023) | Bdd015a | Unpublished | 2.38e-141 | 1 | |||||
| Fan (2023) | 4 sequences | Unpublished | 1.64e-145 | 4 | |||||
| Fan (2024) | Direct Submission | Submitted (19-NOV-2022) Clinical Laboratory, The P | 8.21e-144 | 1 | |||||
| Fan (2024) | CRF159_10301 | Unpublished | 2e-144 | 3 | |||||
| Fan (2022) | Characterization of a New HIV-1 CRF01_AE/B Recombinant Virus Form Among Men Who Have Sex with Men inBaoding, Hebei,China | AIDS Res Hum Retroviruses (2022) In press | 1.46e-145 | 1 | |||||
| Fang (2003) | Analysis of transition from long-term nonprogressive to progressive infection identifies sequences that may attenuate HIV type 1 | AIDS Res. Hum. Retroviruses 17 (15), 1395-1404 (20 | 1.82e-154 | 10 | |||||
| Fang (2016) | Long-term survivors in Nairobi: complete HIV-1 RNA sequences and immunogenetic associations | J. Infect. Dis. 190 (4), 697-701 (2004) | 2.33e-148 | 7 | |||||
| Fang (2002) | PCR-mediated recombination: a general method applied to construct chimeric infectious molecular clones of plasma-derived HIV-1 RNA | Nat. Med. 5 (2), 239-242 (1999) | 1.67e-152 | 2 | |||||
| Fang (2014) | Recombination following superinfection by HIV-1 | AIDS 18 (2), 153-159 (2004) | 1.16e-144 | 2 | |||||
| Fang (2016) | Unique insertion sequence and pattern of CD4 expression in variants selected with immunotoxins from human immunodeficiency virus type 1-infected T cells | J. Virol. 69 (1), 75-81 (1995) | 2.53e-152 | 1 | |||||
| Farinre (2021) | Subtype-specific differences in Gag-protease replication capacity of HIV-1 isolates from East and West Africa | Retrovirology 18 (1), 11 (2021) | 2.08e-166 | 357 | 357 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Farrar (2016) | Characterisation of a series of human immunodeficiency virus isolates derived sequentially from a single patient | J. Med. Virol. 34 (2), 104-113 (1991) | 9.25e-154 | 1 | |||||
| Federico (2006) | Biologic and molecular characterization of producer and nonproducer clones from HUT-78 cells infected with a patient HIV isolate | AIDS Res. Hum. Retroviruses 5 (4), 385-396 (1989) | 1.59e-151 | 1 | |||||
| Feng (2021) | Direct Submission | Submitted (31-MAY-2021) Faculty of Life Science an | 8.98e-141 | 4 | Unpublished | ||||
| Feng (2013) | The rapidly expanding CRF01_AE epidemic in China is driven by multiple lineages of HIV-1 viruses introduced in the 1990s | AIDS 27 (11), 1793-1802 (2013) | 1.19e-146 | 75 | 75 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Feng (2023) | Characterization of a Novel HIV-1 Circulating Recombinant Form,CRF01_AE/B'/C, in Yunnan, China | Unpublished | 7.78e-150 | 3 | |||||
| Feng (2014) | Identification of a Novel HIV-1 Second-Generation Recombinant Form (CRF01_AE/CRF07_BC) in Jilin, China | AIDS Res. Hum. Retroviruses 30 (8), 819-822 (2014) | 9.36e-146 | 1 | |||||
| Feng (2016) | Diverse intersubtype recombinants and high frequency of drug-resistance mutations of HIV-1 among newly diagnosed and antiretroviral treatment naive HIV-infected individuals in Baoshan, a western prefecture of Yunnan, China | Unpublished | 2.38e-160 | 103 | Unpublished | ||||
| Feng (2025) | Identification of a newly emerging second generation HIV-1 circulating recombinant form | Unpublished | 4.14e-146 | 3 | |||||
| Feng (2016) | Geographic origin and evolutionary history of China's two predominant HIV-1 circulating recombinant forms, CRF07_BC and CRF08_BC | Sci Rep 6, 19279 (2016) | 7.87e-153 | 19 | |||||
| Feng (2014) | Identification of a Novel HIV Type 1 Circulating Recombinant Form (CRF65_cpx) Composed of CRF01_AE and Subtypes B and C in Western Yunnan, China | AIDS Res. Hum. Retroviruses 30 (6), 598-602 (2014) | 1.12e-146 | 3 | |||||
| Feng (2016) | Genomic Characterization of a Novel Circulating Recombinant Form (CRF86_BC) identified from Yunnan, China | Unpublished | 2.63e-146 | 3 | Unpublished | ||||
| Feng (2018) | First characterization of a novel HIV-1 recombinant form CRF100_01C comprising CRF01_AE and C among heterosexuals in Yunnan, China | Unpublished | 3.8e-143 | 3 | Unpublished | ||||
| Feng (2020) | HIV-1 CRF85_BC from Yunnan | Unpublished | 3.6e-147 | 2 | Unpublished | ||||
| Feng (2019) | Untitled | Unpublished | 3.2e-145 | 2 | Unpublished | ||||
| Fernandez-Garcia (2009) | Development of a panel of well-characterized human immunodeficiency virus type 1 isolates from newly diagnosed patients including acute and recent infections | AIDS Res. Hum. Retroviruses 25 (1), 93-102 (2009) | 1.58e-152 | 14 | |||||
| Fernandez-Garcia (2012) | The Analysis of Near Full-Length Genome Sequences of HIV Type 1 Subtype A Viruses from Russia Supports the Monophyly of Major Intrasubtype Clusters | AIDS Res. Hum. Retroviruses 28 (10), 1340-1343 (20 | 9.92e-146 | 10 | |||||
| Fernandez-Garcia (2016) | Identification of an HIV-1 BG Intersubtype Recombinant Form (CRF73_BG), Partially Related to CRF14_BG, Which Is Circulating in Portugal and Spain | PLoS ONE 11 (2), E0148549 (2016) | 3.23e-144 | 1 | |||||
| Fernandez-Garcia (2016) | Near full-length genome characterization of a newly identified HIV type 1 subtype F variant circulating in St. Petersburg, Russia | AIDS Res. Hum. Retroviruses 25 (11), 1187-1191 (20 | 1.09e-144 | 2 | |||||
| Fernandez-Garcia (2016) | Identification of a new HIV type 1 circulating BF intersubtype recombinant form (CRF47_BF) in Spain | AIDS Res. Hum. Retroviruses 26 (7), 827-832 (2010) | 1.59e-144 | 2 | |||||
| Ferrari (2014) | HLA-A and -B allele expression and ability to develop anti-Gag cross-clade responses in subtype C HIV-1-infected Ethiopians | Hum. Immunol. 65 (6), 648-659 (2004) | 5e-162 | 173 | 35 | Naive | PBMC | Molecular clones | HLA |
| Fischer (2012) | Distinct Evolutionary Pressures Underlie Diversity in Simian Immunodeficiency Virus and Human Immunodeficiency Virus Lineages | J. Virol. 86 (24), 13217-13231 (2012) | 3.74e-112 | 24 | |||||
| Fisher (2022) | Plasma-Derived HIV-1 Virions Contain Considerable Levels of Defective Genomes | Unpublished | 1.19e-170 | 895 | |||||
| Fisher (2023) | Unequal distribution of genetically-intact HIV-1 proviruses in cells expressing the immune checkpoint markers PD-1 and/or CTLA-4 | Unpublished | 2.57e-169 | 453 | |||||
| Fisher (2024) | Emergence of genetically distinct HIV-1 populations is associated with transient virological control during analytical interruption of antiretroviral therapy | Unpublished | 1.14e-167 | 91 | |||||
| Fisher (2024) | Emergence of genetically distinct HIV-1 populations is associated with transient virological control during analytical interruption of antiretroviral therapy | Unpublished | 2.43e-167 | 395 | |||||
| Flaherty (2015) | Molecular and biological characterization of a neurovirulent molecular clone of simian immunodeficiency virus | J. Virol. 71 (8), 5790-5798 (1997) | 7.97e-100 | 1 | |||||
| Fleury (2016) | Sequences of clustered epitopes in gag and nef potentially presented by predominant class I human leukocyte antigen HLA alleles A and B expressed by human immunodeficiency virus type 1 (HIV-1) infected patients in Vietnam | Unpublished | 1.03e-61 | 1 | Unpublished | ||||
| Fogel (2015) | Evaluating chemical and evolutionary information for RNA secondary structure determination | Unpublished | 1.48e-166 | 695 | Unpublished | ||||
| Foglieni (2016) | A cluster of human immunodeficiency virus Type 1 recombinant form escaping detection by commercial genomic amplification assays | Transfusion (2010) In press | 6.12e-157 | 1 | |||||
| Fomsgaard (2006) | A highly divergent proviral DNA clone of SIV from a distinct species of African green monkey | Virology 182 (1), 397-402 (1991) | 2.49e-101 | 2 | |||||
| Fomsgaard (2016) | Full-length characterization of A1/D intersubtype recombinant genomes from a therapy-induced HIV type 1 controller during acute infection and his noncontrolling partner | AIDS Res. Hum. Retroviruses 24 (3), 463-472 (2008) | 1.15e-151 | 2 | |||||
| Foster (2014) | Novel HIV-1 recombinants spreading across multiple risk groups in the United Kingdom: the identification and phylogeography of Circulating Recombinant Form (CRF) 50_A1D | PLoS ONE 9 (1), E83337 (2014) | 1.46e-153 | 5 | |||||
| Frahm (2007) | Increased sequence diversity coverage improves detection of HIV-specific T cell responses | J. Immunol. 179 (10), 6638-6650 (2007) | 9.07e-169 | 23 | |||||
| Franchini (1996) | Molecular and biological characterization of a replication competent human immunodeficiency type 2 (HIV-2) proviral clone | Proc. Natl. Acad. Sci. U.S.A. 86 (7), 2433-2437 (1 | 7.57e-100 | 1 | |||||
| Franchini (2016) | Sequence of simian immunodeficiency virus and its relationship to the human immunodeficiency viruses | Nature 328 (6130), 539-543 (1987) | 5.58e-97 | 1 | |||||
| Frange (2016) | New and Old Complex Recombinant HIV-1 Strains Among Patients with Primary Infection in 1996-2006 in France: the French ANRS CO06 Primo Cohort Study | Unpublished | 2.97e-145 | 2 | Unpublished | ||||
| Freitas (2012) | Novel multi-region hybridization assay for the identification of the most prevalent genetic forms of the human immunodeficiency virus type 1 (HIV-1) circulating in Portugal | AIDS Res. Hum. Retroviruses (2012) In press | 4.77e-144 | 3 | Unpublished | ||||
| Fukasawa (2016) | Sequence of simian immunodeficiency virus from African green monkey, a new member of the HIV/SIV group | Nature 333 (6172), 457-461 (1988) | 3.18e-105 | 1 | |||||
| Fumin (2016) | Cloning and Characterization of a Virtually Full-Length HIV-1 Genome of a Prevalent Subtype B-Thai Strain in Central China | Unpublished | 6.25e-149 | 1 | Unpublished | ||||
| Gaebler (2019) | Quadruplex qPCR approach facilitates qualitative and quantitative analysis of the HIV-1 latent reservoir | J Exp Med. 2019 Oct 7;216(10):2253-2264 | 5.01e-156 | 751 | 6 | ART | Plasma; PBMC | SGS | Reservoir |
| Gaebler (2020) | Sequence evaluation and comparative analysis of novel assays for intact proviral HIV-1 DNA | J Virol. 2021 Feb 24;95(6):e01986-20 | 2.5e-169 | 3104 | 39 | ART | PBMC | SGS | Reservoir |
| Gaebler (2022) | Prolonged viral suppression with anti-HIV-1 antibody therapy | Nature 606 (7913), 368-374 (2022) | 1.69e-170 | 5199 | |||||
| Gaillard (2011) | Sustained elite suppression of replication competent HIV-1 in a patient treated with rituximab based chemotherapy | J. Clin. Virol. 51 (3), 195-198 (2011) | 6.23e-167 | 2 | |||||
| Galkin (2012) | Isolation, Characterization, and Sequence Analysis of a Novel HIV Type 1 Subtype A1 Strain from Russia | AIDS Res. Hum. Retroviruses 28 (9), 939-946 (2012) | 8.26e-144 | 1 | |||||
| Galkin (2016) | Full-Length Genomic Sequencing and Analysis of Four HIV Type 1 Subtype B Isolates Circulating in the Territory of Russia | AIDS Res. Hum. Retroviruses 22 (11), 1192-1197 (20 | 1.25e-152 | 4 | |||||
| Galkin (2016) | Sequencing and analysis of full-length HIV-1 CRF06_cpx isolate from Russia | Unpublished | 3.92e-143 | 1 | Unpublished | ||||
| Gall (2014) | Complete Genome Sequence of the WHO International Standard for HIV-1 RNA Determined by Deep Sequencing | Genome Announc 2 (1), e01254-13 (2014) | 5.15e-151 | 1 | |||||
| Gao (2022) | Direct Submission | Submitted (26-OCT-2021) Ragon Institute of MGH MIT | 9.03e-147 | 31 | |||||
| Gao (2016) | Complete genomes of HIV-1 subtype C viruses in South Africa | Unpublished | 2.64e-146 | 2 | Unpublished | ||||
| Gao (2016) | Recombination in human immunodefeciency virus type 2 | Unpublished | 9.44e-105 | 1 | Unpublished | ||||
| Gao (1999) | Origin of HIV-1 in the chimpanzee Pan troglodytes troglodytes | Nature 397 (6718), 436-441 (1999) | 4.57e-136 | 1 | |||||
| Gao (2014) | Molecular cloning and analysis of functional envelope genes from human immunodeficiency virus type 1 sequence subtypes A through G. The WHO and NIAID Networks for HIV Isolation and Characterization | J. Virol. 70 (3), 1651-1667 (1996) | 1.93e-146 | 2 | |||||
| Gao (1998) | A comprehensive panel of near-full-length clones and reference sequences for non-subtype B isolates of human immunodeficiency virus type 1 | J. Virol. 72 (7), 5680-5698 (1998) | 1.64e-150 | 8 | |||||
| Gao (2004) | The heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin | J. Virol. 70 (10), 7013-7029 (1996) | 2.24e-144 | 2 | |||||
| Gao (2016) | An isolate of human immunodeficiency virus type 1 originally classified as subtype I represents a complex mosaic comprising three different group M subtypes (A, G, and I) | J. Virol. 72 (12), 10234-10241 (1998) | 3.66e-144 | 1 | |||||
| Gao (2001) | Molecular characterization of a highly divergent HIV type 1 isolate obtained early in the AIDS epidemic from the Democratic Republic of Congo | AIDS Res. Hum. Retroviruses 17 (12), 1217-1222 (20 | 6.87e-146 | 1 | |||||
| Gao (2001) | Evidence of two distinct subsubtypes within the HIV-1 subtype A radiation | AIDS Res. Hum. Retroviruses 17 (8), 675-688 (2001) | 2.05e-149 | 5 | |||||
| Gao (2001) | Evidence for two distinct sub-subtypes within the HIV-1 subtype A radiation | Unpublished | 4.7e-160 | 4 | Unpublished | ||||
| Gao (1994) | HIV-1 sequence subtype D in the United States | AIDS Res. Hum. Retroviruses 10 (5), 625-627 (1994) | 9.17e-147 | 1 | |||||
| Gao (2021) | Genetic characteristics of a New HIV-1 subtype B/C intersubtype circulating recombinant form (CRF118_BC) identified in Yunnan, China | J Infect 83 (2), 237-279 (2021) | 3.81e-149 | 3 | |||||
| Gao (2021) | Direct Submission | Submitted (06-AUG-2020) Department of Laboratory M | 6.04e-142 | 1 | Unpublished | ||||
| Garcia-Broncano (2020) | Early antiretroviral therapy in neonates with HIV-1 infection restricts viral reservoir size and induces a distinct innate immune profile | Sci Transl Med 11 (520) (2019) | 1.4e-159 | 395 | 10 | ART | PBMC | SGS | Reservoir |
| Garcia-Knight (2016) | Viral Evolution and Cytotoxic T Cell Restricted Selection in Acute Infant HIV-1 Infection | Sci Rep 6, 29536 (2016) | 2.96e-163 | 79 | 87 | Naive | Plasma | Direct PCR | HLA |
| Gay (2025) | Age inversely correlates with T cell response to modified vaccinia Ankara vectored mosaic vaccines, MVA.HIVconsvX in people with HIV on antiretroviral therapy | Unpublished | 9.44e-152 | 3 | |||||
| Ge (2018) | Near full-length genome sequence of a novel HIV-1 second-generation recombinant form (CRF01_AE/CRF07_BC) detected among men who have sex with men in Tianjin, China | Unpublished | 4.23e-142 | 1 | Unpublished | ||||
| Ge (2018) | Characterization of a Novel HIV-1 CRF01_AE/CRF07_BC Recombinant Virus Among Men Who Have Sex with Men in Tianjin, China | Unpublished | 1.77e-143 | 1 | Unpublished | ||||
| Ge (2019) | Genomic Characterization of a Novel HIV-1 CRF01_AE/07_BC Recombinant Virus From a Married Men Who Have Sex with Men in Tianjin, China | Unpublished | 5.13e-143 | 1 | Unpublished | ||||
| Ge (2019) | Identification of a Novel HIV-1 Second-Generation (CRF01_AE/B) Among Men Who Have Sex with Men in Tianjin, China | Unpublished | 2.66e-145 | 1 | Unpublished | ||||
| Geels (2003) | Identification of sequential viral escape mutants associated with altered T-cell responses in a human immunodeficiency virus type 1-infected individual | J. Virol. 77 (23), 12430-12440 (2003) | 3.47e-154 | 7 | |||||
| Geels (2005) | Broad cross-clade T-cell responses to gag in individuals infected with human immunodeficiency virus type 1 non-B clades (A to G): importance of HLA anchor residue conservation | J. Virol. 79 (17), 11247-11258 (2005) | 1.94e-163 | 5 | |||||
| Geels (2016) | Differential loss of human immunodeficiency virus type I (HIV-1)-specific T-helper responses in two HIV-1 infected individuals following CTL escape | Unpublished | 3.01e-154 | 5 | Unpublished | ||||
| Geldmacher (2009) | Minor viral and host genetic polymorphisms can dramatically impact the biologic outcome of an epitope-specific CD8 T-cell response | Blood 114 (8), 1553-1562 (2009) | 1.06e-165 | 91 | 91 | Naive | Plasma | Direct PCR | HLA |
| George (2018) | Rapid Development of High Level Resistance to Dolutegravir with Emergence of T97A Mutation in Two Treatment Experienced Individuals with Baseline Partial Sensitivity to Dolutegravir | Open Forum Infect Dis (2018) In press | 2.62e-144 | 1 | Unpublished | ||||
| Georges-Courbot (2016) | Natural infection of a household pet red-capped mangabey (Cercocebus torquatus torquatus) with a new simian immunodeficiency virus | J. Virol. 72 (1), 600-608 (1998) | 4.28e-96 | 1 | |||||
| Gerhardt (2016) | In-depth, longitudinal analysis of viral quasispecies from an individual triply infected with late-stage human immunodeficiency virus type 1, using a multiple PCR primer approach | J. Virol. 79 (13), 8249-8261 (2005) | 2.61e-158 | 98 | 1 | Naive | PBMC | Molecular clones | Miscellaneous |
| Gesprasert (2010) | HLA-associated immune pressure on Gag protein in CRF01_AE-infected individuals and its association with plasma viral load | PLoS ONE 5 (6), E11179 (2010) | 6.43e-162 | 370 | 219 | Mixed | PBMC | Direct PCR | HLA |
| Ghosh (1998) | Human Immunodeficiency Virus type 1 complete genomic sequence | Unpublished | 6.22e-152 | 1 | Unpublished | ||||
| Ghosh (1993) | A molecular clone of HIV-1 tropic and cytopathic for human and chimpanzee lymphocytes | Virology 194 (2), 858-864 (1993) | 2.33e-152 | 1 | |||||
| Giandhari (2015) | Genetic Changes in HIV-1 Gag-Protease Associated with Protease Inhibitor-Based Therapy Failure in Pediatric Patients | AIDS Res. Hum. Retroviruses 31 (8), 776-782 (2015) | 2.17e-162 | 40 | 40 | Mixed | Plasma | Direct PCR | Miscellaneous |
| Gijsbers (2014) | Low level of HIV-1 evolution after transmission from mother to child | Sci Rep 4, 5079 (2014) | 8.02e-173 | 120 | 10 | Naive | PBMC | SGS | Acute infection |
| Gilbert (2007) | The origin and emergence of HIV/AIDS in the Americas | Proc. Natl. Acad. Sci. U.S.A. (2007) In press | 3.99e-172 | 5 | Unpublished | ||||
| Gladkov (2023) | Direct Submission | Submitted (17-FEB-2022) Ragon Institute of MGH MIT | 1.32e-161 | 32 | |||||
| Gnanadurai (2016) | Genetic identity and biological phenotype of a transmitted/founder virus representative of nonpathogenic simian immunodeficiency virus infection in African green monkeys | J. Virol. 84 (23), 12245-12254 (2010) | 2.64e-98 | 1 | |||||
| Godwe (2023) | Structural features and genetic diversity in Gag gene of rare HIV-1 subtypes from the Democratic Republic of Congo | AIDS Res Hum Retroviruses (2023) In press | 2.17e-164 | 148 | |||||
| Godwe (2024) | Evolutionary dynamics of HIV-1 group M in Cameroon | Unpublished | 1.79e-163 | 115 | |||||
| Gomes (2020) | Immune escape mutations in HIV-1 controllers in the Brazilian Amazon region | BMC Infect. Dis. 20 (1), 546 (2020) | 9.68e-172 | 16 | |||||
| Gondim (2021) | Heightened resistance to host type 1 interferons characterizes HIV-1 at transmission and after antiretroviral therapy interruption | Sci Transl Med 13 (576), eabd8179 (2021) | 2.68e-155 | 252 | 25 | Mixed | Plasma; PBMC; QVOA | Direct PCR; SGS | Reservoir |
| Gonelli (2024) | Subclinical SIV infections in macaques during antibody immunoprophylaxis | Unpublished | 5.02e-99 | 111 | |||||
| Gorjipour (2016) | Cloning, soluble expression in E. coli and immunoreactivity of HIV-1 CRF35_AD p24 protein from an Iranian clinical isolate | Unpublished | 8.5e-154 | 1 | Unpublished | ||||
| Goulder (2001) | Substantial differences in specificity of HIV-specific cytotoxic T cells in acute and chronic HIV infection | J. Exp. Med. 193 (2), 181-194 (2001) | 5.64e-171 | 123 | 11 | Naive | PBMC | Molecular clones | HLA |
| Gounder (2015) | High Frequency of Transmitted HIV-1 Gag HLA Class I-Driven Immune Escape Variants but Minimal Immune Selection over the First Year of Clade C Infection | PLoS ONE 10 (3), E0119886 (2015) | 1.55e-162 | 647 | 22 | Naive | Plasma | Molecular clones | HLA |
| Gounder (2016) | Complex phylogeny of HIV-1 among drug users in Kenya | AIDS Res Hum Retroviruses. 2017 May;33(5):500-510 | 8.06e-164 | 230 | 54 | Naive | Plasma | Molecular clones; SGS | Molecular epidemiology |
| Graf (2016) | Cloning and characterization of a virtually full-length HIV type 1 genome from a subtype B'-Thai strain representing the most prevalent B-clade isolate in China | AIDS Res. Hum. Retroviruses 14 (3), 285-288 (1998) | 4.37e-152 | 1 | |||||
| Granier (2013) | Pressure from TRIM5alpha contributes to control of HIV-1 replication by individuals expressing protective HLA-B alleles | J. Virol. 87 (18), 10368-10380 (2013) | 1.13e-172 | 56 | 56 | Naive | Plasma; PBMC | Direct PCR | HLA |
| Grant (2020) | Pervasive and non-random recombination in near full-length HIV genomes from Uganda | Virus Evol 6 (1), veaa004 (2020) | 8.16e-154 | 1409 | 1409 | Naive | Plasma | NGS | Molecular epidemiology |
| Grant (2022) | A large population sample of African HIV genomes from the 1980s reveals a reduction in subtype D over time associated with propensity for CXCR4 tropism | Retrovirology 19 (1) (2023) In press | 4.82e-153 | 121 | |||||
| Grisson (2016) | Infectious molecular clone of a recently transmitted pediatric human immunodeficiency virus clade C isolate from Africa: evidence of intraclade recombination | J. Virol. 78 (24), 14066-14069 (2004) | 2e-146 | 1 | |||||
| Grossmann (2015) | Subtype-independent near full-length HIV-1 genome sequencing and assembly to be used in large molecular epidemiological studies and clinical management | J Int AIDS Soc 18, 20035 (2015) | 7.95e-153 | 24 | |||||
| Gryseels (2020) | A near-full-length HIV-1 genome from 1966 recovered from formalin-fixed paraffin-embedded tissue | bioRxivorg, 1-15 (2019) | 3.13e-115 | 1 | Unpublished | ||||
| Guan (2021) | Multiple HIV-1 subtypes were found circulating in Jiangmen District of Guangdong, China | J Med Virol. 2020 Mar 1. | 4.29e-156 | 146 | 146 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Guan (2021) | Genetic characterization of a novel HIV-1 CRF55_01B/CRF07_BC Recombinant Form Identified in Jiangmen, China | Unpublished | 1.99e-145 | 3 | Unpublished | ||||
| Guan (2022) | Genetic characterization of a novel HIV-1 CRF55_01B/CRF07_BC Recombinant Form Identified in Jiangmen, China | Unpublished | 2.12e-146 | 4 | |||||
| Gui (2017) | Direct Submission | Submitted (11-MAY-2014) Department of AIDS Researc | 1.03e-167 | 347 | Unpublished | ||||
| Gui (2015) | Genetic Characterization of a Unique Recombinant Originating from CRF55_01B, CRF01_AE, and CRF07_BC in Shenzhen, China | AIDS Res. Hum. Retroviruses 31 (5), 559-563 (2015) | 5.68e-145 | 1 | |||||
| Guillon (1996) | Completion of nucleotide sequences of non-syncytium-inducing and syncytium-inducing HIV type 1 variants isolated from the same patient | AIDS Res. Hum. Retroviruses 11 (12), 1537-1541 (19 | 1.91e-155 | 2 | |||||
| Guimaraes (2009) | Close phylogenetic relationship between Angolan and Romanian HIV-1 subtype F1 isolates | Retrovirology 6, 39 (2009) | 1.36e-145 | 4 | |||||
| Guimaraes (2016) | Identification of two new CRF_BF in Rio de Janeiro State, Brazil | AIDS 22 (3), 433-435 (2008) | 1.23e-153 | 7 | |||||
| Guo (2016) | Near full-length genome characterization of an HIV-1 CRF01_AE strain in Jiangsu, China: evidence of two independent introductions from Fujian | AIDS Res. Hum. Retroviruses 25 (6), 619-623 (2009) | 2.36e-144 | 1 | |||||
| Guo (2016) | First detection of a novel HIV Type 1 CRF01_AE/07_BC recombinant among an epidemiologically linked cohort of IDUs in Jiangsu, China | AIDS Res. Hum. Retroviruses 25 (4), 463-467 (2009) | 1.12e-156 | 16 | |||||
| Guo (2014) | A Novel HIV-1 CRF01_AE/B Recombinant Among Men Who Have Sex with Men in Jiangsu Province, China | AIDS Res. Hum. Retroviruses 30 (7), 706-710 (2014) | 4.55e-142 | 1 | |||||
| Guo (2018) | The identification of a novel HIV-1 CRF01_AE/B recombinant using the near full length genome in Jiangsu Province, China | AIDS Res. Hum. Retroviruses 30 (12), 1239-1242 (20 | 1.11e-143 | 1 | |||||
| Gupta-Wright (2022) | Virological failure, HIV-1 drug resistance, and early mortality in adults admitted to hospital in Malawi: an observational cohort study | Lancet HIV 7 (9), e620-e628 (2020) | 1.47e-156 | 331 | |||||
| Gupta (2016) | Full-length HIV-1 Gag determines protease inhibitor | AIDS 24 (11), 1651-1655 (2010) | 5.31e-159 | 2 | |||||
| Gupta (2005) | Analysis of HIV Type 1 Subtype C Full-Length gag Gene Sequences from India: Novel Observations and Plausible Implications | AIDS Res. Hum. Retroviruses 21 (12), 1066-1072 (20 | 1.14e-161 | 24 | |||||
| Gupta (2000) | Cloning and Sequencing of HIV-1 Gag (C-subtype) from Indian strain | Unpublished | 6.44e-169 | 2 | Unpublished | ||||
| Gupta (2016) | Human immunodeficiency virus type-1 p24 sequence from an Indian strain: expression in Escherichia coli and implications in diagnostics | Gene 190 (1), 27-30 (1997) | 3.72e-155 | 1 | |||||
| Gurgo (1993) | Envelope sequences of two new United States HIV-1 isolates | Virology 164 (2), 531-536 (1988) | 5.43e-152 | 1 | |||||
| Gurtler (1994) | A new subtype of human immunodeficiency virus type 1 (MVP-5180) from Cameroon | J. Virol. 68 (3), 1581-1585 (1994) | 1.01e-124 | 1 | |||||
| Hackett (2016) | Genetic analysis of HIV type 1 group O p24gag sequences from Cameroon and Equatorial Guinea | AIDS Res. Hum. Retroviruses 13 (13), 1155-1158 (19 | 1.73e-140 | 8 | |||||
| Hahn (2016) | Molecular characterization of an attenuated human immunodeficiency virus type 2 isolate | J Virol. 1990 Feb;64(2):890-901 | 1.38e-103 | 1 | |||||
| Halvas (2021) | HIV-1 viremia not suppressible by antiretroviral therapy can originate from large T cell clones producing infectious virus | J Clin Invest 130 (11), 5847-5857 (2020) | 1.61e-155 | 32 | 8 | ART | Plasma; PBMC | SGS | Reservoir |
| Ham (2016) | Complete Genome Sequence of the WHO International Standard for HIV-2 RNA Determined by Deep Sequencing | Genome Announc 4 (1), e01626-15 (2016) | 4.76e-102 | 1 | |||||
| Han (2015) | Development of an HIV-1 Subtype Panel in China: Isolation and Characterization of 30 HIV-1 Primary Strains Circulating in China | PLoS ONE 10 (5), E0127696 (2015) | 5.89e-158 | 27 | 27 | Naive | Cultured PBMC | Direct PCR | Molecular epidemiology |
| Han (2019) | Genetic characterization of a novel HIV-1 CRF07_BC/CRF55_01B #Recombinant Form Identified in Jiangmen, China | Unpublished | 5.42e-144 | 1 | Unpublished | ||||
| Han (2025) | Direct Submission | Submitted (20-AUG-2024) NHC Key Laboratory of AIDS | 5.91e-144 | 3 | |||||
| Han (2013) | Genome Sequences of a Novel HIV-1 Circulating Recombinant Form, CRF55_01B, Identified in China | Genome Announc 1 (1), E00050-12 (2013) | 5.34e-145 | 3 | |||||
| Han (2013) | High Prevalence of HIV-1 Intersubtype B'/C Recombinants among Injecting Drug Users in Dehong, China | PLoS ONE 8 (5), E65337 (2013) | 1.31e-167 | 88 | 95 | Uncertain | Plasma | Direct PCR; SGS | Molecular epidemiology |
| Han (2013) | Genome Sequences of a Novel HIV-1 Circulating Recombinant Form (CRF59_01B) Identified among Men Who Have Sex with Men in Northeastern China | Genome Announc 1 (3) (2013) | 4.7e-144 | 2 | |||||
| Han (2018) | Identification and the Evolutionary Characters of a New CRF01_AE/CRF07_BC Lineage among Men Who Have Sex With Men in Northeastern China | Unpublished | 1.1e-142 | 6 | Unpublished | ||||
| Han (2015) | A Large-scale Survey of CRF55_01B from Men-Who-Have-Sex-with-Men in China: implying the Evolutionary History and Public Health Impact | Sci Rep 5, 18147 (2015) | 1.49e-145 | 2 | |||||
| Han (2016) | Molecular Epidemiology of HIV in Liaoning Province, Northeastern China: Complex Findings in a Low Prevalence Area | Unpublished | 1.69e-166 | 148 | Unpublished | ||||
| Hanna (2014) | Phylogenetic Characterization of Six Full-Length HIV-1 Subtype C Molecular Clones from Three Patients: Identification of Rare Subtype C Strains Containing Two NF-kappaB Motifs in the Long Terminal Repeat | AIDS Res. Hum. Retroviruses 30 (6), 586-591 (2014) | 1.96e-143 | 6 | |||||
| Hao (2019) | Characterization of a Novel HIV-1 Second-Generation Recombinant Form Originated from HIV-1 CRF01_AE/CRF07_BC in MSM Population from Beijing, China | Unpublished | 1.47e-145 | 1 | Unpublished | ||||
| Hardy (2025) | Aberrant strand transfer events across multiple stages of reverse transcription shape the heterogeneous landscape of the HIV-1 reservoir | Unpublished | 7.98e-168 | 48 | |||||
| Hariharan (2025) | Superinfection promotes replication and diversification of defective HIV-1 proviruses in people with non-suppressible viraemia | Nat Microbiol (2025) In press | 4.86e-153 | 130 | |||||
| Harris (2016) | Genomic Characterization of a Novel HIV Type 1 B/G Intersubtype Recombinant Strain from an Injecting Drug User in Germany | AIDS Res. Hum. Retroviruses 21 (7), 654-660 (2005) | 1.72e-142 | 1 | |||||
| Harris (2016) | Among 46 near full length HIV type 1 genome sequences from Rakai District, Uganda, subtype D and AD recombinants predominate | AIDS Res. Hum. Retroviruses 18 (17), 1281-1290 (20 | 4.58e-153 | 45 | 45 | Naive | PBMC | Direct PCR | Molecular epidemiology |
| Harris (2016) | A cluster of HIV type 1 subtype C sequences from Ethiopia, observed in full genome analysis, is not sustained in subgenomic regions | AIDS Res. Hum. Retroviruses 19 (12), 1125-1133 (20 | 6.86e-147 | 6 | |||||
| Hartana (2022) | Immune correlates of HIV-1 reservoir cell decline in early-treated infants | Cell Rep 40 (3), 111126 (2022) | 2.21e-157 | 302 | |||||
| Hasegawa (2016) | Genomic divergence of HIV-2 from Ghana | AIDS Res. Hum. Retroviruses 5 (6), 593-604 (1989) | 1.61e-101 | 1 | |||||
| Hasson (2025) | Differential HIV-1 Proviral Defects in Children vs. Adults on Antiretroviral Therapy | Unpublished | 2.03e-160 | 551 | |||||
| Hatziioannou (2014) | HIV-1-induced AIDS in monkeys | Science 344 (6190), 1401-1405 (2014) | 1.48e-152 | 8 | |||||
| Hayashida (2024) | Identification of New Circulating Recombinant Form of HIV-1 CRF127_07109 in Northern Vietnam | AIDS Res Hum Retroviruses 40 (10), 562-567 (2024) | 8.07e-146 | 12 | |||||
| Hayashida (2024) | Identification of new circulating recombinant form of HIV-1 CRF139_02B in Japan, and search for the origin | Glob Health Med 6 (5), 345-351 (2024) | 3.16e-145 | 4 | |||||
| He (2017) | Near Full-Length Genome Sequence of a Novel HIV-1 Second-Generation Recombinant Form (CRF01_AE/CRF07_BC) Detected among Blood Donors in North China | AIDS Res. Hum. Retroviruses (2017) In press | 1.46e-142 | 1 | |||||
| Hebberecht (2019) | Single genome sequencing of near full-length HIV-1 RNA using a limiting dilution approach | J. Virol. Methods 274, 113737 (2019) | 5.01e-155 | 77 | 87 | Naive | Plasma | SGS | Molecular epidemiology |
| Hebberecht (2020) | Characterizing viruses involved in local HIV transmission using near full-length genome sequencing | Infect Genet Evol. 2020 Oct;84:104365 | 2.53e-154 | 40 | 40 | Uncertain | Plasma | SGS | Molecular epidemiology |
| Heipertz (2013) | Molecular Epidemiology of Early and Acute HIV Type 1 Infections in the United States Navy and Marine Corps, 2005-2010 | AIDS Res. Hum. Retroviruses 29 (10), 1310-1320 (20 | 5.36e-154 | 6 | |||||
| Heipertz (2016) | Significant contribution of subtype G to HIV-1 genetic complexity in Nigeria identified by a newly developed subtyping assay specific for subtype G and CRF02_AG | Medicine (Baltimore) 95 (32), E4346 (2016) | 1.06e-146 | 42 | 42 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Henn (2012) | Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection | PLoS Pathog. 8 (3), E1002529 (2012) | 8.75e-158 | 84 | 89 | Naive | Plasma | Direct PCR; SGS; NGS | Acute infection |
| Herbeck (2012) | Demographic processes affect HIV-1 evolution in primary infection before the onset of selective processes | J. Virol. 85 (15), 7523-7534 (2011) | 4.34e-155 | 470 | 11 | Naive | Plasma | SGS | Acute infection |
| Hertz (2017) | A study of vaccine-induced immune pressure on breakthrough infections in the Phambili phase 2b HIV-1 vaccine efficacy trial | Vaccine 34 (47), 5792-5801 (2016) | 1.73e-151 | 272 | 43 | Naive | Plasma | SGS | Molecular epidemiology |
| Hey-Nguyen (2018) | HIV-1 DNA is Maintained in Antigen-Specific CD4+ T Cell Subsets in Patients on Long-Term Antiretroviral Therapy Regardless of Recurrent Antigen Exposure | AIDS Res. Hum. Retroviruses (2019) In press | 1.26e-172 | 221 | 11 | Mixed | Plasma; PBMC | Molecular clones | Reservoir |
| Heyndrickx (2016) | Simplified strategy for detection of recombinant human immunodeficiency virus type 1 group M isolates by gag/env heteroduplex mobility assay. Study Group on Heterogeneity of HIV Epidemics in African Cities | J. Virol. 74 (1), 363-370 (2000) | 4.61e-138 | 3 | |||||
| Hiener (2017) | Next-Generation Sequencing of Single Full-Length HIV-1 Proviruses Identifies Intact Genomes | Cell Rep. 2017 Oct 17;21(3):813-822 | 3.73e-170 | 351 | 6 | ART | PBMC | SGS | Reservoir |
| Hierholzer (2003) | Molecular Epidemiology of HIV Type 1 in Ecuador, Peru, Bolivia, Uruguay, and Argentina | AIDS Res. Hum. Retroviruses 18 (18), 1339-1350 (20 | 1.83e-155 | 10 | |||||
| Hirano (2016) | Characterization of drug-resistance mutation profile kinetics in HIV-1 with infectious molecular clones | Unpublished | 1.21e-152 | 6 | Unpublished | ||||
| Hirsch (2016) | A molecularly cloned, pathogenic, neutralization-resistant simian immunodeficiency virus, SIVsmE543-3 | J. Virol. 71 (2), 1608-1620 (1997) | 2.84e-103 | 1 | |||||
| Hirsch (1993) | Identification of a new subgroup of SIVagm in tantalus monkeys | Virology 197 (1), 426-430 (1993) | 1.1e-109 | 5 | |||||
| Hirsch (1995) | Induction of AIDS by simian immunodeficiency virus from an African green monkey: species-specific variation in pathogenicity correlates with the extent of in vivo replication | J. Virol. 69 (2), 955-967 (1995) | 1.69e-101 | 1 | |||||
| Hirsch (2000) | A distinct African lentivirus from Sykes' monkeys | J. Virol. 67 (3), 1517-1528 (1993) | 2.34e-84 | 1 | |||||
| Hirsch (2005) | Direct Submission | Unpublished | 1.98e-103 | 1 | Unpublished | ||||
| Hirsch (2016) | Human retrovirses, cancer and AIDS: approach to prevention and therapy | Cell. 1987 May 8;49(3):307-19 | 8.44e-100 | 1 | |||||
| Hirsch (2016) | Characterization of a novel simian immunodeficiency virus (SIV) from L'Hoest monkeys (Cercopithecus l'hoesti): implications for the origins of SIVmnd and other primate lentiviruses | J. Virol. 73 (2), 1036-1045 (1999) | 2.42e-85 | 1 | |||||
| Ho (2013) | Replication-competent non-induced proviruses in the latent reservoir increase barrier to HIV-1 cure | Cell. 2013 Oct 24;155(3):540-51 | 8.49e-170 | 125 | 8 | ART | PBMC | SGS | Reservoir |
| Hoelscher (2001) | High proportion of unrelated HIV-1 intersubtype recombinants in the Mbeya region of southwest Tanzania | AIDS 15 (12), 1461-1470 (2001) | 2.35e-148 | 9 | |||||
| Holguin (2016) | Genetic characterization of complex inter-recombinant HIV-1 strains circulating in Spain and reliability of distinct rapid subtyping tools | J. Med. Virol. 80 (3), 383-391 (2008) | 3.08e-144 | 3 | |||||
| Holguin (2016) | Rapid Increase of HIV-1 Non-B Subtypes and Recombinants Among Newly Diagnosed Native Spaniards | Unpublished | 2.23e-157 | 12 | Unpublished | ||||
| Holzmayer (2016) | Characterization of genetically diverse HIV type 1 from a London cohort: near full-length genomic analysis of a subtype H strain | AIDS Res. Hum. Retroviruses 25 (7), 721-726 (2009) | 1.47e-141 | 1 | |||||
| Holzmayer (2016) | Near-full-length genomic sequence of a human immunodeficiency type 1 subtype g strain from cameroon | AIDS Res. Hum. Retroviruses 21 (5), 414-419 (2005) | 1.16e-144 | 1 | |||||
| Honnayakanahalli Marichannegowda (2021) | Direct Submission | Submitted (05-SEP-2020) Medicine-Infectious Diseas | 8.91e-156 | 62 | 2 | ART | Plasma; PBMC | SGS | Reservoir |
| Hora (2013) | Characterization of clonally expanded HIV-1 sequences in chronically infected individuals | PLoS One. 2016 Jun 17;11(6):e0157340 | 7.37e-155 | 403 | 31 | Mixed | Plasma; Cultured PBMC | Direct PCR | NonM, HIV2, SIV |
| Hora (2013) | Direct Submission | Submitted (11-OCT-2013) Medicine, Duke Human Vacci | 2.85e-151 | 9 | Unpublished | ||||
| Hora (2016) | Characterization of near full-length genome sequences for standard panels of HIV-2 isolates established at the External Quality Assurance Program Oversight Laboratory (EQAPOL) | Unpublished | 1.4e-105 | 3 | Unpublished | ||||
| Horsburgh (2019) | Cells expressing HLA-DR contain High Levels of Genetically Intact HIV | AIDS. 2020 Apr 1;34(5):659-668 | 4.38e-165 | 127 | 6 | ART | PBMC | SGS | Reservoir |
| Horsburgh (2021) | Cellular activation, differentiation and proliferation influence the dynamics of genetically-intact proviruses over time | J Infect Dis (2021) In press | 2.88e-168 | 969 | 8 | ART | Proviral | SGS | Reservoir |
| Horsburgh (2025) | Development and verification of a novel tiling PCR method for long-range HIV-1 sequencing in a diagnostic setting | Unpublished | 9.78e-155 | 89 | |||||
| Hosaka (2016) | HIV-1 CRF01_AE and Subtype B Transmission Networks Crossover: A New AE/B Recombinant Identified in Japan | AIDS Res. Hum. Retroviruses 32 (5), 412-419 (2016) | 3.5e-153 | 7 | |||||
| Howard (2016) | Sequence analysis of the glycoprotein 120 coding region of a new HIV type 1 subtype A strain (HIV-1IbNg) from Nigeria | AIDS Res. Hum. Retroviruses 10 (12), 1755-1757 (19 | 2.03e-144 | 1 | |||||
| Hsi (2014) | Genome Sequence of a Novel HIV-1 Circulating Recombinant Form (CRF64_BC) Identified from Yunnan, China | AIDS Res. Hum. Retroviruses (2014) In press | 1.23e-147 | 6 | |||||
| Hu (2016) | Characterization and Comparison of Recombinant Simian Immunodeficiency Virus from Drill (Mandrillus leucophaeus) and Mandrill (Mandrillus sphinx) Isolates | J. Virol. 77 (8), 4867-4880 (2003) | 1.74e-99 | 2 | |||||
| Huang (2016) | Complex mosaic composition of near full-length genomes of two NED (NIH-ENVA-DOD) subtype panel HIV type 1 strains, BCF-Dioum and BCF-Kita, originating from the Democratic Republic of Congo (DRC) | AIDS Res. Hum. Retroviruses 25 (10), 1039-1043 (20 | 8.32e-145 | 2 | |||||
| Huang (2007) | Genetic Characterization of CRF01_AE Full-Length Human Immunodeficiency Virus Type 1 Sequences from Fujian, China | AIDS Res. Hum. Retroviruses 23 (4), 569-574 (2007) | 3.79e-146 | 10 | |||||
| Huang (2016) | Genetic characterization of three CRF01_AE full-length HIV type 1 sequences from Fujian Province, China | Chin. Med. J. 119 (19), 1622-1628 (2006) | 6.63e-145 | 3 | |||||
| Huang (2016) | Prevalence of HIV type-1 drug-associated mutations in pre-therapy patients in the Free State, South Africa | Antivir. Ther. (Lond.) 14 (7), 975-984 (2009) | 1.57e-166 | 206 | 425 | Naive | Plasma | Direct PCR | Miscellaneous |
| Huang (1998) | Complete sequence of type B HIV-1 Taiwan strain | Unpublished | 2.98e-153 | 1 | Unpublished | ||||
| Huang (2013) | Development of a novel rhesus macaque model with an infectious R5 simian-human immunodeficiency virus encoding HIV-1 CRF08_BC env | J. Med. Primatol. (2013) In press | 4.83e-148 | 1 | |||||
| Huang (2021) | Genomic characterization of a new CRF01_AE/CRF07_BC case from a MSM patient in Guangdong, China | J Med Virol (2021) In press | 9.73e-145 | 1 | Unpublished | ||||
| Huet (2005) | Genetic organization of a chimpanzee lentivirus related to HIV-1 | Nature 345 (6273), 356-359 (1990) | 2.83e-142 | 1 | |||||
| Huet (2016) | A highly defective HIV-1 strain isolated from a healthy Gabonese individual presenting an atypical western blot | AIDS 3 (11), 707-715 (1989) | 3.57e-153 | 1 | |||||
| Hunt (2016) | Characterisation of near-full length genome sequences of three South African human immunodeficiency virus type 1 subtype C isolates | Virus Genes 26 (1), 49-56 (2003) | 7.01e-147 | 3 | |||||
| Ibe (2016) | Analysis of near full-length genomic sequences of drug-resistant HIV-1 spreading among therapy-naive individuals in Nagoya, Japan: amino acid mutations associated with viral replication activity | AIDS Res. Hum. Retroviruses 24 (8), 1121-1125 (200 | 1.95e-151 | 12 | |||||
| Ibe (2016) | HIV-2 CRF01_AB: first circulating recombinant form of HIV-2 | J. Acquir. Immune Defic. Syndr. 54 (3), 241-247 (2 | 4.18e-104 | 3 | |||||
| Imamichi (2016) | Defective HIV-1 proviruses produce novel protein-coding RNA species in HIV-infected patients on combination antiretroviral therapy | Proc. Natl. Acad. Sci. U.S.A. 113 (31), 8783-8788 | 1.07e-168 | 174 | 5 | ART | PBMC | SGS | Reservoir |
| Imamichi (2020) | Defective HIV-1 proviruses produce viral proteins | Proc. Natl. Acad. Sci. U.S.A., 201917876 (2020) | 1.48e-159 | 28 | 1 | ART | PBMC | SGS | Reservoir |
| Imamichi (2022) | Associations among markers of HIV-1 transcription, protein production, and inflammation during chronic HIV-1 infection | Unpublished | 1.78e-155 | 184 | |||||
| Imamichi (2023) | Direct Submission | Submitted (08-AUG-2022) CMRS, LIR, NIAID, NIH, 10 | 2.01e-153 | 1 | |||||
| Imamichi (2025) | Tissue Distribution of Transcriptionally Active HIV-1 Proviral DNA: Clonal Expansion and Impact of Therapy | Unpublished | 3.7e-170 | 518 | |||||
| Iweriebor (2012) | Molecular epidemiology of HIV in two highly endemic areas of northeastern South Africa | Arch. Virol. 157 (3), 455-465 (2012) | 3.9e-152 | 42 | 42 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Iweriebor (2016) | Genetic Analysis of the Near Full-Length Genome of an HIV Type 1 A1/C Unique Recombinant Form from Northern South Africa | AIDS Res. Hum. Retroviruses 27 (8), 911-915 (2011) | 1.73e-138 | 1 | |||||
| Iyer (2017) | Resistance to type 1 interferons is a major determinant of HIV-1 transmission fitness | Proc. Natl. Acad. Sci. U.S.A. (2017) In press | 1.35e-154 | 303 | 8 | Naive | Plasma | SGS | Acute infection |
| Jacobs (2012) | Construction of a High Titer Infectious HIV-1 Subtype C Proviral Clone from South Africa | Viruses 4 (9), 1830-1843 (2012) | 2.22e-145 | 1 | |||||
| Jacobs (2016) | Complete genome sequencing of a non-syncytium-inducing HIV type 1 subtype D strain from Cape Town, South Africa | AIDS Res. Hum. Retroviruses 23 (12), 1575-1578 (20 | 5.25e-151 | 1 | |||||
| Jagdagsuren (2017) | The second molecular epidemiological study of HIV infection in Mongolia between 2010 and 2016 | PLoS ONE 12 (12), e0189605 (2017) | 1.64e-150 | 3 | |||||
| Jahanbakhsh (2013) | Molecular Epidemiology of HIV Type 1 Infection in Iran: Genomic Evidence of CRF35_AD Predominance and CRF01_AE Infection Among Individuals Associated with Injection Drug Use | AIDS Res. Hum. Retroviruses 29 (1), 198-203 (2013) | 9.43e-145 | 10 | |||||
| James (2018) | Low-bias RNA sequencing of the HIV-2 genome from blood plasma | J. Virol. (2018) In press | 3.36e-103 | 5 | Unpublished | ||||
| Janssens (2016) | Near full-length genome analysis of HIV type 1 CRF02.AG subtype C and CRF02.AG subtype G recombinants | AIDS Res. Hum. Retroviruses 16 (12), 1183-1189 (20 | 1.33e-144 | 2 | |||||
| Janssens (2016) | HIV-1 subtype H near-full length genome reference strains and analysis of subtype-H-containing inter-subtype recombinants | AIDS 14 (11), 1533-1543 (2000) | 9.26e-143 | 2 | |||||
| Jeewanraj (2023) | Partial compartmentalisation of HIV-1 subtype C between lymph nodes, peripheral blood mononuclear cells and plasma | Virology 582, 62-70 (2023) | 5.53e-163 | 241 | |||||
| Jenkins (2016) | Complete Genome Sequence of a Reference Stock of Simian Immunodeficiency Virus RNA (SIVmac251/32H/L28) Determined by Deep Sequencing | Genome Announc 4 (3) (2016) | 9.3e-100 | 1 | |||||
| Jia (2016) | Near Full-Length Genomic Sequences of Two Novel HIV-1 Recombinant Forms identified in Shenzhen, China | AIDS Res. Hum. Retroviruses (2016) In press | 1.08e-145 | 2 | |||||
| Jiang (2016) | Primary Infection by a Human Immunodeficiency Virus with Atypical Coreceptor Tropism | J. Virol. (2011) In press | 2.38e-153 | 10 | |||||
| Jiang (2019) | Genomic Characterization of a Novel HIV Type 1 strain originating from CRF07_BC and CRF01_AE by Heterosexual Transmission in the Lingshan Prefecture of Guangxi province, China | AIDS Res. Hum. Retroviruses (2019) In press | 7.79e-145 | 1 | |||||
| Jiao (2018) | Characterization of a New HIV-1 CRF01_AE/CRF07_BC Recombinant virus Form Men Who Have Sex with Men in Beijing, China | AIDS Res. Hum. Retroviruses (2018) In press | 2.37e-145 | 1 | |||||
| Jin (2016) | Mosaic genome structure of simian immunodeficiency virus from west African green monkeys | EMBO J. 13 (12), 2935-2947 (1994) | 1.38e-98 | 1 | |||||
| Jinnopat (2010) | Impact of amino acid variations in Gag and protease of HIV type 1 CRF01_AE strains on drug susceptibility of virus to protease inhibitors | J. Acquir. Immune Defic. Syndr. 52 (3), 320-328 (2 | 6.86e-159 | 8 | |||||
| Joas (2018) | vpu and nef cooperate to allow efficient replication of HIV-1-like SIVagm chimeras in African Green Monkeys without causing disease | Unpublished | 2.64e-98 | 1 | Unpublished | ||||
| Johnson (1996) | Simian immunodeficiency viruses from African green monkeys display unusual genetic diversity | J. Virol. 64 (3), 1086-1092 (1990) | 1.33e-105 | 3 | |||||
| Jonassen (2005) | Intersubtype recombinant HIV type 1 involving HIV-MAL-like and subtype H-like sequence in four Norwegian cases | AIDS Res. Hum. Retroviruses 16 (1), 49-58 (2000) | 5.42e-147 | 1 | |||||
| Jones (2016) | Determinants of human immunodeficiency virus type 1 escape from the primary CD8+ cytotoxic T lymphocyte response | J. Exp. Med. 200 (10), 1243-1256 (2004) | 2.57e-168 | 1 | |||||
| Joseph (2022) | Deep Sequencing Analysis of HIV-1 Proviruses Reveals Frequent Asymmetric Long-Terminal Repeats And Other Novel Proviral Structures | Unpublished | 6.91e-167 | 85 | |||||
| Joseph (2024) | The timing of HIV-1 infection of cells that persist on therapy is not strongly influenced by replication competency or cellular tropism of the provirus | PLoS Pathog 20 (2), e1011974 (2024) | 1.38e-147 | 26 | |||||
| Junqueira (2020) | NEW GENOMES FROM THE CONGO BASIN EXPAND HISTORY OF CRF01_AE ORIGIN AND DISSEMINATION | AIDS Res. Hum. Retroviruses (2020) In press | 7.35e-147 | 13 | |||||
| K'Aluoch (2016) | High Frequency of Recombinant A and D HIV-1 subtypes in a Population from Uganda | (in) ? (Ed.); 12TH CONFERENCE ON RETROVIRUSES AND | 1.28e-165 | 49 | 177 | Mixed | Plasma | Direct PCR | Molecular epidemiology |
| Kahle (2014) | HIV-1 subtype C is not associated with higher risk of heterosexual HIV-1 transmission: a multinational study among African HIV-1 serodiscordant couples | AIDS. 2014 Jan 14;28(2):235-43 | 1.31e-157 | 350 | 350 | Naive | Plasma | Direct PCR | Acute infection |
| Kang (2018) | Direct Submission | Submitted (04-JUN-2018) Division of Virology and I | 1.93e-144 | 1 | Unpublished | ||||
| Kang (2024) | Identification of two Novel HIV-1 unique recombinant forms in Shijiazhuang, Hebei | Unpublished | 9.9e-145 | 3 | |||||
| Kanja (2018) | Flexible but conserved: a new essential motif in the C-ter domain of HIV-1 group M integrases | Unpublished | 6.79e-158 | 2 | Unpublished | ||||
| Kapaata (2020) | Transmitted/founder HIV-1 Gag-pol sequences from Uganda reveals sequence changes associated with transmitted viruses and elevated replication capacity for recombinants | Unpublished | 4.24e-155 | 18 | Unpublished | ||||
| Kapaata (2021) | HIV-1 Gag-Pol Sequences from Ugandan Early Infections Reveal Sequence Variants Associated with Elevated Replication Capacity | Viruses 13 (2), 171 (2021) | 6.19e-154 | 14 | |||||
| Kapaata (2021) | HIV-1 Gag-pol sequences from Uganda early infections reveal sequence variants associated with elevated replication capacity | Unpublished | 2.89e-153 | 16 | |||||
| Karade (2015) | Genetic Characterization of a Unique Recombinant Form(URF) Involving HIV-1 CRF 01_AE and Subtype C from Pune, India | Unpublished | 8.06e-144 | 1 | Unpublished | ||||
| Katusiime (2019) | Intact HIV proviruses persist in children 7-9 years after initiation of ART in the first year of life | J. Virol. (2020) In press | 1.55e-147 | 7 | Unpublished | ||||
| Katusiime (2025) | Divergent populations of HIV-infected naive and memory CD4+ T-cell clones in children on antiretroviral therapy | J Clin Invest (2025) In press | 5.5e-153 | 1 | |||||
| Kawashima (2011) | Adaptation of HIV-1 to human leukocyte antigen class I | Nature 458 (7238), 641-645 (2009) | 5.78e-173 | 1233 | 1233 | Naive | Plasma; PBMC | None | HLA |
| Ke (2014) | Near Full-Length Genomic Characterization of a Novel HIV Type 1 CRF01_ AE/07_BC Recombinant in Men Who Have Sex with Men from Shannxi, China | Unpublished | 3.29e-145 | 3 | Unpublished | ||||
| Kee (2021) | Direct Submission | Submitted (03-FEB-2020) Viral Disease Research, Ko | 4.76e-154 | 12 | Unpublished | ||||
| Keele (2019) | Derivation of simian tropic HIV-1 infectious clone reveals virus adaptation to a new host | Unpublished | 4.72e-157 | 17 | Unpublished | ||||
| Keele (2013) | Immune clearance of highly pathogenic SIV infection | Unpublished | 3.24e-106 | 2 | Unpublished | ||||
| Keele (2016) | Generation of pathogenic transmitted/founder infectious molecular clones from the SIVsmE660 and SIVmac251 lineages | Unpublished | 3.31e-103 | 6 | Unpublished | ||||
| Keele (2016) | Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection | Proc. Natl. Acad. Sci. U.S.A. 105 (21), 7552-7557 | 4.71e-147 | 1 | |||||
| Keele (2016) | Chimpanzee reservoirs of pandemic and nonpandemic HIV-1 | Science 313 (5786), 523-526 (2006) | 1.46e-141 | 4 | |||||
| Keele (2024) | No evidence for ongoing replication on ART in SIV infected macaques | Unpublished | 4.47e-100 | 1742 | |||||
| Kelentse (2021) | Direct Submission | Submitted (18-NOV-2020) Research Laboratory, Botsw | 2.97e-162 | 33 | 16 | Mixed | Plasma; CSF | Direct PCR | Miscellaneous |
| Kelleher (2016) | Positive selection of each of the clustered compensatory mutations in HIV-1 gag required for escape from HLA-B27 restricted CTL response | J Exp Med. 2001 Feb 5;193(3):375-86 | 1.46e-173 | 169 | 75 | Naive | PBMC | Molecular clones | HLA;Acute infection |
| Kemal (2007) | Transition from Long-Term Nonprogression to HIV-1 Disease Associated with Escape from Cellular Immune Control | Unpublished | 7.47e-168 | 14 | Unpublished | ||||
| Kemal (2013) | Molecular Epidemiology of HIV Type 1 Subtypes in Rwanda | AIDS Res. Hum. Retroviruses 29 (6), 957-962 (2013) | 2.54e-168 | 57 | 30 | Naive | Plasma; PBMC | Direct PCR | Molecular epidemiology |
| Kennedy (2023) | Comprehensive analysis of HIV reservoirs in elite controllers | J Clin Invest 133 (3), e165446 (2023) | 3.63e-154 | 86 | |||||
| Kestler (2012) | Induction of AIDS in rhesus monkeys by molecularly cloned simian immunodeficiency virus | Science 248 (4959), 1109-1112 (1990) | 7.97e-100 | 1 | |||||
| Kfutwah (2017) | Direct Submission | Submitted (02-SEP-2014) Virology, Centre Pasteur d | 7.08e-145 | 2 | Unpublished | ||||
| Khairunisa (2023) | Nearly full-length sequences of CRF01_AE strains prevalent in Indonesia | Unpublished | 1.05e-143 | 20 | |||||
| Khan (2016) | A highly divergent simian immunodeficiency virus (SIVstm) recovered from stored stump-tailed macaque tissues | J. Virol. 65 (12), 7061-7065 (1991) | 1.91e-107 | 1 | |||||
| Khawcharoenporn (2011) | Predictors for Recombinant HIV Infection in a Thai Cohort | Sex Transm Dis 38 (11), 1046-1049 (2011) | 5.86e-160 | 4 | |||||
| Khurana (2002) | Sequence of HIV-1 isolate 01IN565.10 from India | Unpublished | 1.18e-144 | 4 | Unpublished | ||||
| Kiepiela (2005) | Dominant influence of HLA-B in mediating the potential co-evolution of HIV and HLA | Nature. 2004 Dec 9;432(7018):769-75 | 3.7e-163 | 225 | 150 | Naive | Plasma; PBMC | Direct PCR; Molecular clones | HLA |
| Kiguoya (2017) | Subtype-Specific Differences in Gag-Protease-Driven Replication Capacity are Consistent with Inter-Subtype Differences in HIV-1 Disease Progression | J. Virol. (2017) In press | 8.68e-165 | 129 | 99 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Kijak (2008) | Variable contexts and levels of hypermutation in HIV-1 proviral genomes recovered from primary peripheral blood mononuclear cells | Virology 376 (1), 101-111 (2008) | 4.92e-144 | 8 | |||||
| Kijak (2013) | Molecular Evolution of the HIV-1 Thai Epidemic between the Time of RV144 Immunogen Selection to the Execution of the Vaccine Efficacy Trial | J. Virol. 87 (13), 7265-7281 (2013) | 8.42e-153 | 42 | 42 | Naive | Plasma | SGS | Molecular epidemiology |
| Kijak (2016) | Development and application of a high-throughput HIV-1 genotyping assay to identify CRF02_AG in West/West Central Africa | Unpublished | 2.69e-152 | 1 | Unpublished | ||||
| Kijak (2016) | Development and application of a high-throughput HIV type 1 genotyping assay to identify CRF02_AG in West/West Central Africa | AIDS Res. Hum. Retroviruses 20 (5), 521-530 (2004) | 3.59e-152 | 50 | 62 | Naive | PBMC | Molecular clones | Molecular epidemiology |
| Kijak (2016) | Distinguishing molecular forms of HIV-1 in Asia with a high-throughput, fluorescent genotyping assay, MHAbce v.2 | Virology 358 (1), 178-191 (2007) | 4.08e-154 | 12 | |||||
| Kijak (2017) | Rare HIV-1 transmitted/founder lineages identified by deep viral sequencing contribute to rapid shifts in dominant quasispecies during acute and early infection | PLoS Pathog. 13 (7), E1006510 (2017) | 7.75e-147 | 230 | 6 | Naive | Plasma | SGS | Acute infection |
| Kimata (1997) | The cytopathicity of a simian immunodeficiency virus Mne variant is determined by mutations in Gag and Env | J. Virol. 71 (10), 7629-7639 (1997) | 1.74e-107 | 1 | |||||
| Kimata (2016) | A lymph node-derived cytopathic simian immunodeficiency virus Mne variant replicates in nonstimulated peripheral blood mononuclear cells | J. Virol. 72 (1), 245-256 (1998) | 3.99e-99 | 1 | |||||
| Kinloch (2018) | Direct Submission | Submitted (20-SEP-2018) Faculty of Health Sciences | 2.57e-168 | 337 | 337 | Naive | Plasma | Direct PCR | HLA |
| Kinloch (2023) | HIV reservoirs are dominated by genetically younger and clonally enriched proviruses | bioRxiv (2023) | 1.03e-168 | 1693 | |||||
| Kinloch (2023) | HIV reservoirs are dominated by genetically younger and clonally enriched proviruses | mBio (2023) In press | 3.29e-151 | 70 | |||||
| Kirchhoff (2002) | A novel proviral clone of HIV-2: biological and phylogenetic relationship to other primate immunodeficiency viruses | Virology 177 (1), 305-311 (1990) | 5.42e-102 | 1 | |||||
| Kireev (2018) | Phylogenetic analysis of near full-length genome sequences of HIV-1 Subtype A6 variants circulating in Russia | Unpublished | 7.42e-146 | 47 | Unpublished | ||||
| Kireev (2024) | Features of non-structural proteins of HIV-1 in different regions of the Russian Federation | Unpublished | 3.11e-154 | 27 | |||||
| Kirmaier (2016) | TRIM5 and interspecies transmission of primate immunodeficiency viruses | Unpublished | 2.03e-102 | 1 | Unpublished | ||||
| Knops (2016) | Evolution of protease inhibitor resistance in the gag and pol genes of HIV subtype G isolates | J. Antimicrob. Chemother. 65 (7), 1472-1476 (2010) | 1.11e-151 | 21 | |||||
| Koeppe (2016) | HIV-1 specific CD4+ T cell responses are not associated with significant viral epitope variation in persons with persistent plasma viremia | Unpublished | 6.07e-172 | 44 | Unpublished | ||||
| Komiyama (2016) | Nucleotide sequences of gag and env genes of a Japanese isolate of HIV-1 and their expression in bacteria | AIDS Res. Hum. Retroviruses 5 (4), 411-419 (1989) | 7.49e-156 | 1 | |||||
| Kondo (2016) | Quantitation of HIV-1 group M proviral DNA using TaqMan MGB real-time PCR | J. Virol. Methods 157 (2), 141-146 (2009) | 7.43e-171 | 19 | |||||
| Kong (2017) | Characterization of a New HIV-1 CRF01_AE/CRF07_BC Recombinant virus in Guangxi, China | AIDS Res. Hum. Retroviruses (2017) In press | 6.86e-143 | 1 | |||||
| Kong (2018) | Identification of a novel HIV-1 unique recombinant form between B, CRF01_AE and CRF07_BC in men who have sex with men in Guangxi, China | AIDS Res. Hum. Retroviruses (2018) In press | 1.21e-153 | 1 | |||||
| Koofhethile (2016) | CD8+ T cell breadth and ex vivo virus inhibition capacity distinguish between viremic controllers with and without protective HLA class I alleles | J. Virol. (2016) In press | 6.97e-166 | 21 | |||||
| Koofhethile (2023) | HIV-2 proviral reservoir dominated by defective proviruses | Unpublished | 1.4e-102 | 46 | |||||
| Koulinska (2003) | Hypermutation of HIV type 1 genomes isolated from infants soon after vertical infection | AIDS Res. Hum. Retroviruses 19 (12), 1115-1123 (20 | 6.62e-149 | 3 | |||||
| Koulinska (2016) | A new human immunodeficiency virus type 1 circulating recombinant form from Tanzania | AIDS Res. Hum. Retroviruses 17 (5), 423-431 (2001) | 2.54e-149 | 3 | |||||
| Koulinska (2019) | Common genetic arrangements among human immunodeficiency virus type 1 subtype A and D recombinant genomes vertically transmitted in Tanzania | AIDS Res. Hum. Retroviruses 18 (13), 947-956 (2002 | 7.95e-149 | 5 | |||||
| Kousiappa (2011) | Molecular Characterization of HIV Type 1 Strains from Newly Diagnosed Patients in Cyprus (2007-2009) Recovers Multiple Clades Including Unique Recombinant Strains and Lack of Transmitted Drug Resistance | AIDS Res. Hum. Retroviruses 27 (11), 1183-1199 (20 | 2.69e-155 | 74 | 74 | Naive | Plasma; PBMC | Direct PCR | Molecular epidemiology |
| Kousiappa (2016) | Near Full-Length Genetic Analysis of HIV Sequences Derived from Cyprus: Evidence of a Highly Polyphyletic and Evolving Infection | AIDS Res Hum Retroviruses. 2009 Aug;25(8):727-40 | 2.22e-155 | 76 | 65 | Naive | PBMC | Direct PCR | Molecular epidemiology |
| Kousiappa (2016) | Genetic analysis of HIV type 1 strains from newly infected untreated patients in cyprus: high genetic diversity and low prevalence of drug resistance | AIDS Res. Hum. Retroviruses 25 (1), 23-35 (2009) | 3.3e-167 | 35 | 35 | Naive | PBMC | Direct PCR | Molecular epidemiology |
| Koyanagi (1996) | Dual infection of the central nervous system by AIDS viruses with distinct cellular tropisms | Science 236 (4803), 819-822 (1987) | 6.44e-155 | 1 | |||||
| Kozisek (2012) | Mutations in HIV-1 gag and pol Compensate for the Loss of Viral Fitness Caused by a Highly Mutated Protease | Antimicrob. Agents Chemother. 56 (8), 4320-4330 (2 | 8.78e-149 | 1 | |||||
| Kraus (1995) | Characterization of a Novel Molecular Clone of HIV-2 Infectious for Macaca nemestrina | Proc Natl Acad Sci U S A. 1993 May 1;90(9):4226-30. | 2.73e-103 | 1 | |||||
| Krebs (2019) | Longitudinal Analysis Reveals Early Development of Three MPER-Directed Neutralizing Antibody Lineages from an HIV-1-Infected Individual | Immunity (2019) In press | 2.58e-146 | 1 | Unpublished | ||||
| Kreutz (1996) | Analysis of the envelope region of the highly divergent HIV-2ALT isolate extends the known range of variability within the primate immunodeficiency viruses | AIDS Res. Hum. Retroviruses 8 (9), 1619-1629 (1992 | 1.44e-153 | 1 | |||||
| Kuehnel (2016) | Molecular cloning of two west African human immunodeficiency virus type 2 isolates that replicate well in macrophages: a Gambian isolate, from a patient with neurologic acquired immunodeficiency syndrome, and a highly divergent Ghanian isolate | Proc Natl Acad Sci U S A. 1989 Apr;86(7):2383-7 | 1.26e-101 | 1 | |||||
| Kuhnel (2005) | Nucleotide sequence of HIV-2D194, an isolate from a Gambian case of 'neuro-AIDS', which showed excellent growth in macrophages | Nucleic Acids Res. 18 (20), 6142 (1990) | 1.26e-101 | 1 | |||||
| Kuo (2020) | Blood and lymph node dissemination of clonal genome-intact HIV-1 DNA sequences during suppressive antiretroviral therapy | J. Infect. Dis. (2020) In press | 1.28e-166 | 369 | 3 | ART | PBMC | SGS | Reservoir |
| Kurle (2005) | Full-length gag sequences of HIV type 1 subtype C recent seroconverters from Pune, India | AIDS Res. Hum. Retroviruses 20 (10), 1113-1118 (20 | 3.71e-161 | 6 | |||||
| Kusagawa (2003) | Identification of HIN type 2 subtype B transmission in East Africa | AIDS Res. Hum. Retroviruses 19 (11), 1045-1049 (20 | 5.5e-102 | 1 | |||||
| Kusagawa (2006) | Isolation and characterization of a full-length molecular DNA clone of Ghanaian HIV type 1 intersubtype A/G recombinant CRF02_AG, which is replication competent in a restricted host range | AIDS Res. Hum. Retroviruses 17 (7), 649-655 (2001) | 7.15e-142 | 1 | |||||
| Kusagawa (2006) | Isolation and characterization of replication-competent molecular DNA clones of HIV type 1 CRF01_AE with different coreceptor usages | AIDS Res. Hum. Retroviruses 18 (2), 115-122 (2002) | 8.69e-145 | 2 | |||||
| Kusagawa (2015) | Novel HIV-1 Recombinant Identified in a Foreign Heterosexual Resident in Japan: Relatedness to Recently Reported CRF69_01B, Detected Primarily among Japanese Men Who Have Sex with Men | Genome Announc 3 (3), e00196-15 (2015) | 4.96e-151 | 1 | |||||
| Kusagawa (2022) | Nucleotide Sequence of HIV-1-Positive Specimen Reference Panel for Evaluation of HIV In Vitro Diagnostics in Japan | AIDS Res Hum Retroviruses 37 (12), 994-997 (2021) | 5.81e-166 | 173 | |||||
| Kusagawa (2022) | Isolation and biological characterization of infectious molecular clones that represent unique biological phenotypes of HIV-1 subtype B and CRF08_BC R5 viruses circulating in Yunnan, China | Unpublished | 1.4e-152 | 2 | |||||
| Kuwata (2016) | Infectious molecular clones from a simian immunodeficiency virus-infected rapid-progressor (RP) macaque: evidence of differential selection of RP-specific envelope mutations in vitro and in vivo | J. Virol. 80 (3), 1463-1475 (2006) | 2.36e-103 | 3 | |||||
| Laeyendecker (2013) | Estimation of HIV Incidence in a Large, Community-Based, Randomized Clinical Trial: NIMH Project Accept (HIV Prevention Trials Network 043) | PLoS ONE 8 (7), E68349 (2013) | 1.46e-155 | 124 | 124 | Mixed | Plasma | Direct PCR | Molecular epidemiology |
| Lakhashe (2008) | Characterization of B/C recombinants of near full-length HIV type 1 from northeastern India with mosaics identical to ARE195FL but with a different ancestral origin | AIDS Res. Hum. Retroviruses 24 (1), 92-99 (2008) | 1.39e-150 | 15 | |||||
| Lakhashe (2016) | Evidence of a novel B/C recombinant exhibiting unique breakpoints of near full-length HIV type 1 genome from Northeastern India | AIDS Res. Hum. Retroviruses 24 (2), 229-234 (2008) | 3.78e-152 | 2 | |||||
| Lambrechts (2023) | HIV-PULSE: A long-read sequencing assay for high-throughput near full-length HIV-1 proviral genome characterization | Unpublished | 4.48e-167 | 634 | |||||
| Lambrechts (2025) | Blood and tissue HIV-1 reservoirs display cellular plasticity and lack of compartmentalization in virally suppressed people | Unpublished | 4.49e-167 | 819 | |||||
| Lamers (2020) | HIV-1 Subtype Distribution and Diversity Over 18 Years in Rakai, Uganda | AIDS Res Hum Retroviruses 36 (6), 522-526 (2020) | 2.5e-163 | 1 | |||||
| Lamers (2025) | Intrahost diversity across varied HIV-1 subtypes from the early pandemic in the Democratic Republic of the Congo | Unpublished | 1.19e-145 | 2 | |||||
| Lan (2017) | Characterization of a novel HIV-1 unique recombinant form a man in Guangdong,China | Unpublished | 1.8e-138 | 1 | Unpublished | ||||
| Lan (2018) | Near full length genomic analysis of a HIV-1 G subtype strain identified in Guangdong province | Unpublished | 6.47e-142 | 1 | Unpublished | ||||
| Lan (2022) | HIV-1 CRF06_cpx in Guangzhou | Unpublished | 2.04e-144 | 1 | |||||
| Lan (2022) | HIV-1 CRF56_cpx in Guangzhou | Unpublished | 4.94e-144 | 1 | |||||
| Lan (2022) | Direct Submission | Submitted (05-MAY-2022) Department of Infectious D | 2.14e-146 | 3 | |||||
| Lan (2022) | The potential CRF in Guangzhou, Guangdong China | Unpublished | 6.68e-146 | 1 | |||||
| Lan (2022) | A potential CRF 07BC-01AE in Guangdong China | Unpublished | 1.1e-145 | 9 | |||||
| Lan (2023) | A potential CRF 07BC-B in Guangdong China | Unpublished | 8.07e-146 | 4 | |||||
| Lan (2020) | Genetic characteristics of CRF12_BF first identified in Guangdong Province, China | AIDS Res Hum Retroviruses (2020) In press | 1.32e-142 | 1 | |||||
| Lan (2021) | Near full-length genomic characterization of a novel HIV-1 B/C recombinant form identified in Guangdong Province, China | AIDS Res Hum Retroviruses (2021) In press | 1.56e-143 | 1 | |||||
| Lan (2023) | Two Potential CRF in Guangdong | Unpublished | 2.12e-144 | 6 | |||||
| Lan (2023) | Direct Submission | Submitted (21-SEP-2023) Institute of Infectious Di | 8.4e-145 | 3 | |||||
| Lan (2023) | A Potential CRF in Guangdong | Unpublished | 4.15e-148 | 8 | |||||
| Lan (2025) | Genetic characterization of a novel HIV-1 circulating recombinant form (CRF162_cpx) involving CRF01_AE, CRF07_BC and subtype B in Guangdong, China | Virus Genes (2024) In press | 8.08e-147 | 8 | |||||
| Lan (2025) | Potential CRF in Guangdong | Unpublished | 1.62e-145 | 1 | |||||
| Land (2016) | Full-length HIV type 1 proviral sequencing of 10 highly exposed women from Nairobi, Kenya reveals a high proportion of intersubtype recombinants | AIDS Res. Hum. Retroviruses 24 (6), 865-872 (2008) | 4.2e-149 | 13 | |||||
| Laomanit (2012) | Near Full-Length Sequence Analysis of HIV CRF01_AE/B Recombinant from Thailand | Unpublished | 4.75e-145 | 1 | Unpublished | ||||
| Lapovok (2021) | Application of NGS protocol for HIV-1 full genome sequencing | Unpublished | 4.95e-155 | 175 | Unpublished | ||||
| Lau (2013) | Continuous crossover(s) events of HIV-1 CRF01_AE and B subtype strains in Malaysia: evidence of rapid and extensive HIV-1 evolution in the region | Curr. HIV Res. 6 (2), 108-116 (2008) | 4.41e-148 | 3 | |||||
| Lau (2016) | Near full-length sequence analysis of a Unique CRF01_AE/B recombinant from Kuala Lumpur, Malaysia | AIDS Res. Hum. Retroviruses 23 (9), 1139-1145 (200 | 4.37e-144 | 1 | |||||
| Lauck (2013) | Discovery and full genome characterization of two highly divergent simian immunodeficiency viruses infecting black-and-white colobus monkeys (Colobus guereza) in Kibale National Park, Uganda | Retrovirology 10 (1), 107 (2013) | 1.4e-73 | 7 | |||||
| Lauck (2014) | Discovery and full genome characterization of a new SIV lineage infecting red-tailed guenons (Cercopithecus ascanius schmidti) in Kibale National Park, Uganda | Retrovirology 11 (1), 55 (2014) | 5.56e-96 | 3 | |||||
| Laukkanen (2000) | Virtually full-length subtype F and F/D recombinant HIV-1 from Africa and South America | Virology 269 (1), 95-104 (2000) | 3.05e-149 | 4 | |||||
| Laukkanen (2016) | Direct Submission | Submitted (18-NOV-1998) Department of Infectious D | 1.52e-145 | 2 | Unpublished | ||||
| Laukkanen (2016) | Virtually full-length sequences of HIV type 1 subtype J reference strains | AIDS Res. Hum. Retroviruses 15 (3), 293-297 (1999) | 8.5e-147 | 2 | |||||
| Lazaro (2011) | Molecular Characterization of HIV-1 CRF01_AE in Mekong Delta, Vietnam, and Impact of T-Cell Epitope Mutations on HLA Recognition (ANRS 12159) | PLoS ONE 6 (10), E26244 (2011) | 3.08e-159 | 68 | 125 | Naive | Plasma | Direct PCR | HLA |
| Lee (2016) | HIV type 1 env subtype A variants in Taiwan | AIDS Res. Hum. Retroviruses 14 (9), 807-809 (1998) | 8.28e-145 | 3 | |||||
| Lee (2016) | Domestic transmission of HIV type 1 subtype G strains in Taiwan | AIDS Res. Hum. Retroviruses 15 (12), 1137-1140 (19 | 1.16e-143 | 8 | |||||
| Lee (2023) | HIV-1 subtype A1, D, and recombinant proviral genome landscapes during long-term suppressive therapy | Unpublished | 8.3e-164 | 360 | |||||
| Lee (2020) | HIV-1 DNA sequence diversity and evolution during acute subtype C infection | Nat Commun 10 (1), 2737 (2019) | 4.6e-162 | 205 | 4 | Naive | PBMC | SGS; NGS | Acute infection |
| Lee (2016) | Characterization of the Near Full-Length Genome of a Novel HIV-1 CRF01_AE/CRF07_BC Recombinant in an Injection Drug User from Southern Taiwan | AIDS Res. Hum. Retroviruses (2016) In press | 1.75e-143 | 1 | |||||
| Leitman (2017) | HLA-B*14:02-Restricted Env-Specific CD8+ T-Cell Activity Has Highly Potent Antiviral Efficacy Associated with Immune Control of HIV Infection | J Virol. 2017 Oct 27;91(22):e00544-17 | 1.49e-171 | 36 | 36 | Naive | PBMC | Direct PCR | HLA |
| Lemey (2016) | Maximum Likelihood Analysis of Clock-Like Behavior in HIV: Implications on Dating Strategies in HIV Molecular Phylogenies | Unpublished | 1.35e-154 | 6 | Unpublished | ||||
| Leoz (2012) | Circulation of multiple patterns of unique recombinant forms B/CRF02_AG in France: precursor signs of the emergence of an upcoming CRF B/02 | AIDS 25 (11), 1371-1377 (2011) | 5.91e-147 | 5 | |||||
| Leoz (2013) | Characterization of CRF56_cpx, a new circulating B/CRF02/G recombinant form identified in MSM in France | AIDS 27 (14), 2309-2312 (2013) | 2.17e-147 | 3 | |||||
| Lewis (2014) | Two Mother to Child Transmissions Within Three Generations of the Same Family | Unpublished | 2.31e-162 | 10 | Unpublished | ||||
| Lewitus (2022) | HIV-1 infections with multiple founders associate with the development of neutralization breadth | Unpublished | 8.26e-151 | 359 | |||||
| Lewitus (2022) | HIV-1 infections with multiple founders associate with the development of neutralization breadth | Unpublished | 2.27e-150 | 141 | |||||
| Li (2016) | Rapid reversion of sequence polymorphisms dominates early human immunodeficiency virus type 1 evolution | J. Virol. 81 (1), 193-201 (2007) | 1.05e-153 | 18 | |||||
| Li (2017) | Genome sequences of a Novel HIV-1 Circulatiing Recombinant Form Identified in China | Unpublished | 7.86e-144 | 5 | Unpublished | ||||
| Li (2016) | High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men | PLoS Pathog. 6 (5), E1000890 (2010) | 5.62e-158 | 94 | 28 | Naive | Plasma; PBMC | SGS | Acute infection |
| Li (2025) | Identification of multiple unique HIV-1 recombinant forms in HIV-1 newly infected individuals-Anhui province, 2023 | Unpublished | 3.39e-146 | 5 | |||||
| Li (2025) | Identification of Two Novel HIV-1 Unique Recombinant Forms Among Men Who Have Sex with Men in Northern China | AIDS Res Hum Retroviruses (2025) In press | 5.63e-144 | 2 | |||||
| Li (2025) | Identification of a new ly emerging second-generation HIV-1 circulating recombinant form among men who have sex with men in China | Unpublished | 5.32e-143 | 4 | |||||
| Li (2022) | Identification and Characterization of two novel HIV-1 Unique Recombinant Form comprising CRF01_AE and CRF07_BC Identified among Men Who Have Sex with Men in China | Unpublished | 8.12e-147 | 2 | |||||
| Li (2021) | A newly emerging HIV-1 circulating recombinant form (CRF110_BC) comprising subtype B and C among intravenous drug users in Yunnan, China | J Infect (2021) In press | 2.66e-145 | 1 | |||||
| Li (2016) | Identification and characterization of two human immunodeficiency virus type 1 unique recombinant forms from Yunnan, China | Virol Sin 31 (2), 184-187 (2016) | 9.84e-152 | 2 | |||||
| Li (2016) | Direct Submission | Submitted (04-NOV-2015) Department of HIV/AIDS cli | 2.01e-150 | 1 | Unpublished | ||||
| Li (2017) | Direct Submission | Submitted (24-DEC-2015) Department of HIV/AIDS Cli | 3.39e-146 | 1 | Unpublished | ||||
| Li (2022) | Epidemiology of HIV-1 CRF103_01B in Beijing and Its Genetic Recombinant Characteristics | Unpublished | 1.89e-148 | 6 | |||||
| Li (2025) | Direct Submission | Submitted (01-MAR-2025) Institute of Infectious Di | 1.29e-147 | 187 | |||||
| Li (2011) | Factors associated with viral rebound in HIV-1-infected individuals enrolled in a therapeutic HIV-1 gag vaccine trial | J. Infect. Dis. 203 (7), 976-983 (2011) | 2.09e-170 | 204 | 110 | ART | Plasma | Direct PCR; Molecular clones | Reservoir |
| Li (2012) | Characteristics and Outcomes of Initial Virologic Suppressors during Analytic Treatment Interruption in a Therapeutic HIV-1 gag Vaccine Trial | PLoS ONE 7 (3), E34134 (2012) | 7.44e-169 | 63 | 11 | ART | Plasma | Direct PCR | Reservoir |
| Li (2012) | Recombination Form and Epidemiology of HIV-1 Unique Recombinant Strains Identified in Yunnan, China | PLoS ONE 7 (10), E46777 (2012) | 4.95e-165 | 60 | 60 | Uncertain | Plasma | Direct PCR | Molecular epidemiology |
| Li (2013) | Subtype CRF01_AE dominate the sexually transmitted human immunodeficiency virus type 1 epidemic in Guangxi, China | J. Med. Virol. 85 (3), 388-395 (2013) | 1.2e-166 | 233 | 294 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Li (2016) | Near Full-Length Sequence Analysis of a Novel HIV-1 C/CRF01_AE Recombinant Variant from Yunnan, China | AIDS Res. Hum. Retroviruses (2010) In press | 2.07e-146 | 1 | |||||
| Li (2016) | Analysis of the near full-length genomic characterization of HIV-1 subtype G detected in Guangxi for the first time | Unpublished | 1.75e-140 | 1 | Unpublished | ||||
| Li (2016) | Near full-length genomic characterization of a novel HIV type 1 subtype B/C recombinant strain from Yunnan, China | AIDS Res. Hum. Retroviruses 26 (6), 711-716 (2010) | 2.32e-148 | 1 | |||||
| Li (2013) | Genetic Characterization and Transmitted Drug Resistance of the HIV Type 1 Epidemic in Men Who Have Sex with Men in Beijing, China | AIDS Res. Hum. Retroviruses 29 (3), 633-637 (2013) | 1.77e-168 | 99 | 95 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Li (2010) | Genetic characterization of 13 subtype CRF01_AE near full-length genomes in Guangxi, China | AIDS Res. Hum. Retroviruses 26 (6), 699-704 (2010) | 3.8e-146 | 13 | |||||
| Li (2011) | High genetic diversity of HIV-1 was found in men who have sex with men in Shijiazhuang, China | Infect. Genet. Evol. 11 (6), 1487-1492 (2011) | 2.18e-167 | 15 | |||||
| Li (2012) | Multiple Introductions of HIV into Men Who Have Sex with Men Were Found in Zhengzhou City, China | AIDS Res. Hum. Retroviruses 28 (9), 947-951 (2012) | 4.2e-167 | 29 | 20 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Li (2014) | Relatively high prevalence of drug resistance among antiretroviral-naive patients from henan, central china | AIDS Res. Hum. Retroviruses 30 (2), 160-164 (2014) | 4.26e-169 | 129 | 129 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Li (2015) | HIV-1 Thai B strains has spread out of former plasma donors into general population through sexual contact in Henan, China | J Med Virol. 2016 Apr;88(4):614-21. | 3.02e-168 | 177 | 177 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Li (2015) | CRF07_BC strain dominates the HIV-1 epidemic in injection drug users in Liangshan prefecture of Sichuan, China | AIDS Res. Hum. Retroviruses (2015) In press | 8.71e-162 | 392 | 392 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Li (2019) | Single young MSMs were revealed as high risk population by two cross-sectional studies in 2013 and 2015 in Shenzhen, China | Virol J. 2019 Jun 22;16(1):83 | 2.21e-167 | 345 | 345 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Li (2024) | Near Full-Length Genome Characterization of two Novel Unique Recombinants (CRF01_AE/CRF07_BC) in Beijing, China | Unpublished | 4.88e-145 | 2 | |||||
| Li (2024) | Genetic characterisation of a recombinant strain of HIV (CRF121_0107) | Unpublished | 2.76e-145 | 4 | |||||
| Li (2025) | Genetic characterisation of a recombinant strain of HIV (CRF121_0107) | Unpublished | 1.1e-143 | 3 | |||||
| Li (2024) | Identification of a Novel HIV-1 Circulating Recombinant Form (CRF135_0107) in Heilongjiang Province, China | Unpublished | 7.53e-144 | 1 | |||||
| Li (2024) | Identification of a Novel HIV-1 Circulating Recombinant Form (CRF136_0107) in Heilongjiang Province, China | Unpublished | 3.57e-144 | 3 | |||||
| Li (2024) | Identification of a Novel HIV-1 Circulating Recombinant Form (CRF135_0107) in Heilongjiang Province, China | Unpublished | 5.26e-145 | 5 | |||||
| Li (2019) | Direct Submission | Submitted (02-DEC-2018) Department of AIDS Researc | 4.94e-146 | 5 | Unpublished | ||||
| Li (2016) | Near Full-Length Genome Sequences of Two Novel HIV-1 Recombinant Forms Detected In Henan Province, China | AIDS Res. Hum. Retroviruses (2016) In press | 7.85e-143 | 2 | |||||
| Li (2024) | Characterization of two HIV-1 strains with novel unique recombinant genome in Hebei, China | AIDS Res Hum Retroviruses (2024) In press | 3.83e-145 | 2 | |||||
| Li (2014) | Near Full-length Genome Analyses of a Novel HIV-1 Circulating Recombinant Form, CRF63_01B, Identified among MSM in China | Unpublished | 5.94e-145 | 2 | Unpublished | ||||
| Li (2017) | A unique second-generation recombinant form of HIV-1 was identified among MSM, in Beijing, China | Unpublished | 3.74e-146 | 1 | Unpublished | ||||
| Li (2025) | Tracing the epidemic history of HIV-1 CRF01_AE lineages by near full-length genome analyses | Unpublished | 8.65e-145 | 4 | |||||
| Li (2016) | Dual infections with multiple lineages of HIV-1 strains in unique geographical recombination 'hotspots' in Asia | Unpublished | 3.27e-153 | 41 | Unpublished | ||||
| Li (2014) | Near Full-Length Genome Sequence of a Novel HIV-1 Recombinant Form (CRF01_AE/B) Detected Among Men Who Have Sex with Men in Jilin Province, China | AIDS Res. Hum. Retroviruses 30 (7), 701-705 (2014) | 5.15e-149 | 1 | |||||
| Li (2013) | Genome Sequences of a Novel HIV-1 Circulating Recombinant Form (CRF61_BC) Identified among Heterosexuals in China | Genome Announc 1 (3), e00326-13 (2013) | 1.93e-143 | 3 | |||||
| Li (2013) | Near Full-Length Genome Sequence of a Novel HIV Type 1 Second-Generation Recombinant Form (CRF01_AE/CRF07_BC) Identified Among Men Who Have Sex with Men in Jilin, China | AIDS Res. Hum. Retroviruses 29 (12), 1604-1608 (20 | 7.42e-145 | 1 | |||||
| Li (2014) | Near Full-Length Genome Identification of a Novel HIV-1 Recombinant Form (CRF01_AE/B'/C) Among Heterosexuals in Jilin, China | AIDS Res. Hum. Retroviruses 30 (7), 695-700 (2014) | 8.68e-147 | 1 | |||||
| Li (2014) | Molecular Epidemiology of HIV-1 in Jilin Province, Northeastern China: Emergence of a New CRF07_BC Transmission Cluster and Intersubtype Recombinants | PLoS ONE 9 (10), E110738 (2014) | 3.75e-151 | 122 | 110 | Naive | PBMC | Direct PCR | Molecular epidemiology |
| Li (2016) | Molecular epidemiology of the heterosexual HIV-1 transmission in Kunming, Yunnan Province of China suggests origin from the local IDU epidemic | AIDS Res. Hum. Retroviruses 21 (11), 977-980 (2005 | 5.9e-162 | 26 | 26 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Li (2023) | Untitled | Unpublished | 2.48e-144 | 2 | |||||
| Li (2025) | High peak viremia followed by spontaneous HIV-1 control in women living with HIV-1 subtype A1 in East Africa | Unpublished | 3.37e-152 | 8 | |||||
| Li (2017) | Genome Sequence of a Novel HIV-1 Circulating Recombinant Form (CRF79_0107) Identified from Shanxi, China | AIDS Res. Hum. Retroviruses (2017) In press | 5.6e-143 | 3 | |||||
| Li (1993) | Molecular characterization of human immunodeficiency virus type 1 cloned directly from uncultured human brain tissue: identification of replication-competent and -defective viral genomes | J. Virol. 65 (8), 3973-3985 (1991) | 2.56e-155 | 2 | |||||
| Li (2012) | Eastern chimpanzees, but not bonobos, represent a simian immunodeficiency virus reservoir | J. Virol. 86 (19), 10776-10791 (2012) | 2.85e-123 | 1 | |||||
| Li (2016) | High Prevalence of HIV Type 1 Subtype B' Among Heterosexuals in Western Hubei, Central China: Bridging the Epidemic into the General Population | AIDS Res. Hum. Retroviruses 27 (9), 1025-1028 (201 | 5.16e-166 | 40 | 40 | Uncertain | Plasma; PBMC | Molecular clones | Molecular epidemiology |
| Li (2016) | Identification of a novel second-generation circulating recombinant form (CRF48_01B) in Malaysia: a descendant of the previously identified CRF33_01B | J. Acquir. Immune Defic. Syndr. 54 (2), 129-136 (2 | 1.54e-152 | 6 | |||||
| Li (2021) | The first third-generation HIV-1 circulating recombinant form (CRF114_0155) identified in central China | Arch Virol (2021) In press | 1.42e-147 | 8 | |||||
| Li (2012) | Tracing the origin and history of HIV-1 subtype B' epidemic by near full-length genome analyses | AIDS 26 (7), 877-884 (2012) | 1.71e-153 | 33 | 33 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Li (2015) | Genomic Characterization of Two Novel HIV-1 Unique (CRF01_AE/B) Recombinant Forms Among Men Who Have Sex with Men in Beijing, China | AIDS Res. Hum. Retroviruses 31 (9), 921-925 (2015) | 1.05e-142 | 2 | |||||
| Li (2014) | Genomic Characterization of Two Novel HIV-1 Second-Generation Recombinant Forms Among Men Who Have Sex with Men in Beijing, China | AIDS Res. Hum. Retroviruses 31 (3), 342-346 (2015) | 2.3e-141 | 4 | |||||
| Liang (2011) | A Comparison of Parallel Pyrosequencing and Sanger Clone-Based Sequencing and Its Impact on the Characterization of the Genetic Diversity of HIV-1 | PLoS ONE 6 (10), E26745 (2011) | 1.24e-171 | 2863 | 96 | Naive | PBMC | Molecular clones; NGS | Miscellaneous |
| Liang (2020) | Direct Submission | Submitted (13-OCT-2019) School of Public Health, G | 4.36e-145 | 1 | Unpublished | ||||
| Liao (2016) | Phylodynamic analysis of the dissemination of HIV-1 CRF01_AE in Vietnam | Virology 391 (1), 51-56 (2009) | 1.04e-146 | 33 | 33 | Uncertain | Plasma | Direct PCR | Molecular epidemiology |
| Liegeois (2006) | Molecular characterization of a novel simian immunodeficiency virus lineage (SIVtal) from northern talapoins (Miopithecus ogouensis) | Virology 349 (1), 55-65 (2006) | 6.93e-101 | 2 | |||||
| Liegeois (2011) | Full-Length Genome Sequence of a Simian Immunodeficiency Virus from a Wild-Captured Sun-Tailed Monkey in Gabon Provides Evidence for a Species-Specific Monophyletic SIVsun Lineage | AIDS Res. Hum. Retroviruses 27 (11), 1237-1241 (20 | 1.41e-86 | 1 | |||||
| Liegeois (2013) | HIV Type-1 Group O Infection in Gabon: Low Prevalence Rate But Circulation of Genetically Diverse and Drug-Resistant HIV Type-1 Group O Strains | AIDS Res. Hum. Retroviruses 29 (7), 1085-1090 (201 | 1.19e-124 | 2 | |||||
| Liegeois (2014) | Full-Length Genome Analyses of Two New Simian Immunodeficiency Virus (SIV) Strains from Mustached Monkeys (C. Cephus) in Gabon Illustrate a Complex Evolutionary History among the SIVmus/mon/gsn Lineage | Viruses 6 (7), 2880-2898 (2014) | 1.45e-94 | 2 | |||||
| Liegeois (2016) | Full-length genome characterization of a novel simian immunodeficiency virus lineage (SIVolc) from olive Colobus (Procolobus verus) and new SIVwrcPbb strains from Western Red Colobus (Piliocolobus badius badius) from the Tai Forest in Ivory Coast | J. Virol. 83 (1), 428-439 (2009) | 1.31e-94 | 3 | |||||
| Liitsola (2016) | An AB recombinant and its parental HIV type 1 strains in the area of the former Soviet Union: low requirements for sequence identity in recombination. UNAIDS Virus Isolation Network | AIDS Res. Hum. Retroviruses 16 (11), 1047-1053 (20 | 2.07e-143 | 3 | |||||
| Lillemark (2016) | Characterization of HIV-1 from patients with virological failure to a boosted protease inhibitor regimen | J. Med. Virol. 83 (3), 377-383 (2011) | 2.79e-169 | 21 | |||||
| Lin (2016) | Molecular epidemiology of HIV-1 infection and full-length genomic analysis of circulating recombinant form 07_BC strains from injection drug users in Taiwan | J. Infect. Dis. 195 (9), 1283-1293 (2007) | 8.64e-147 | 4 | |||||
| Lindkvist (2016) | Reduction of the HIV-1 reservoir in resting CD4+ T-lymphocytes by high dosage intravenous immunoglobulin treatment: a proof-of-concept study | AIDS Res Ther 6, 15 (2009) | 5.41e-171 | 134 | 9 | ART | Plasma; PBMC | SGS | Reservoir |
| Ling (2025) | Molecular characterization of a unique Recombinant form of HIV-1 subtype F2/CRF02_AG identified in Guangdong, China | Virol J 22 (1), 329 (2025) | 1.09e-147 | 1 | |||||
| Liu (2016) | Genetic characterization of full-length HIV type 1 genomes from 3 infected paid blood donors in Henan, China | J. Acquir. Immune Defic. Syndr. 40 (4), 501-503 (2 | 8.47e-152 | 3 | |||||
| Liu (2023) | Near Full-Length Genomic Characterization of Two Novel HIV Type 1 Second-generation Recombinant Form (CRF01_AE/CRF07_BC) from Guangxi, China | AIDS Res Hum Retroviruses (2023) In press | 3.51e-143 | 2 | |||||
| Liu (2013) | Vertical T cell immunodominance and epitope entropy determine HIV-1 escape | J. Clin. Invest. 123 (1), 380-393 (2013) | 7.25e-157 | 1029 | 17 | Naive | Plasma | SGS | HLA |
| Liu (2016) | Molecular epidemiology of human immunodeficiency virus type 1 and hepatitis C virus in former blood donors in central China | AIDS Res. Hum. Retroviruses 24 (1), 1-6 (2008) | 8.15e-161 | 38 | 38 | Naive | PBMC | Molecular clones | Molecular epidemiology |
| Liu (2008) | Dynamic analysis of genetic diversity of gag and env regions of HIV-1 CRF07_BC recombinant in intravenous drug users in Xinjiang Uvghur Autonomous Region, China | Arch. Virol. 153 (7), 1233-1240 (2008) | 6.24e-162 | 298 | 14 | Naive | Plasma | Molecular clones | Molecular epidemiology |
| Liu (2018) | Direct Submission | Submitted (22-MAY-2018) Division of Virology and I | 9.27e-146 | 1 | Unpublished | ||||
| Liu (2013) | Characterization of near full-length genomes of HIV-1 in Yunnan, China: dominance of multiple circulating recombinant forms and unique recombinant forms | Unpublished | 2.42e-149 | 55 | Unpublished | ||||
| Liu (2016) | Phylogenetic analysis of HIV-1 CRF65_CPX reveals Yunnan province is still a source contributing to the spread of HIV-1 in China | J. Acquir. Immune Defic. Syndr. (2015) In press | 2.13e-152 | 6 | |||||
| Liu (2016) | Identification and Characterization of Two New HIV Type 1 Unique (B/C) Recombinant Forms in China | AIDS Res. Hum. Retroviruses 27 (4), 445-451 (2011) | 1.68e-151 | 2 | |||||
| Liu (2016) | Selection on the human immunodeficiency virus type 1 proteome following primary infection | J. Virol. 80 (19), 9519-9529 (2006) | 1.47e-156 | 208 | 2 | Naive | Plasma; PBMC | Molecular clones | Acute infection |
| Liu (2016) | Preinfection human immunodeficiency virus (HIV)-specific cytotoxic T lymphocytes failed to prevent HIV type 1 infection from strains genetically unrelated to viruses in long-term exposed partners | J. Virol. 83 (20), 10821-10829 (2009) | 2.93e-168 | 24 | |||||
| Liu (2025) | Rapid Circulation of HIV-1 CRF85_BC in Southwest China: its geographic origins and molecular transmission networks analysis | Unpublished | 2.66e-147 | 47 | |||||
| Locatelli (2016) | Full molecular characterization of a simian immunodeficiency virus, SIVwrcpbt from Temminck's red colobus (Piliocolobus badius temminckii) from Abuko Nature Reserve, The Gambia | Virology 376 (1), 90-100 (2008) | 5.12e-87 | 1 | |||||
| Loffredo (2016) | Patterns of CD8+ immunodominance may influence the ability of Mamu-B*08-positive macaques to naturally control simian immunodeficiency virus SIVmac239 replication | J. Virol. 82 (4), 1723-1738 (2008) | 7.53e-100 | 4 | |||||
| Lole (1999) | Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination | J. Virol. 73 (1), 152-160 (1999) | 5.4e-148 | 6 | |||||
| Long (2019) | Direct Submission | Submitted (10-SEP-2019) AIDS and Cancer Virus Prog | 9.41e-101 | 45 | Unpublished | ||||
| Long (2019) | Intactness of persistent SIVmac239 in acutely and chronically treated macaques | Unpublished | 1.83e-103 | 326 | Unpublished | ||||
| Lopez-Galindez (2016) | Initial fitness recovery of HIV-1 is driven by quasispecies heterogeneity and can occur without mutations in the consensus sequence | Unpublished | 1.96e-152 | 22 | Unpublished | ||||
| Lopker (2012) | Transmitted/Founder Viruses from the SIVsmE660 and SIVmac251 Lineages are Infectious and Replication Competent In-Vivo | Unpublished | 3.51e-103 | 2 | Unpublished | ||||
| Lopker (2016) | Derivation and characterization of pathogenic transmitted/founder molecular clones from SIVsmE660 and SIVmac251 following mucosal infection | J. Virol. (2016) In press | 3.24e-109 | 208 | NonM, HIV2, SIV | ||||
| Lorenzo-Redondo (2016) | Dynamics of in vitro fitness recovery of HIV-1 | J. Virol. 85 (4), 1861-1870 (2011) | 1.96e-152 | 12 | |||||
| Louwagie (1993) | Phylogenetic analysis of gag genes from 70 international HIV-1 isolates provides evidence for multiple genotypes | AIDS 7 (6), 769-780 (1993) | 6.95e-170 | 54 | 53 | Naive | Cultured PBMC | Molecular clones | Molecular epidemiology |
| Louwagie (1995) | Genetic analysis of HIV-1 isolates from Brazil reveals presence of two distinct genetic subtypes | AIDS Res. Hum. Retroviruses 10 (5), 561-567 (1994) | 1.41e-162 | 2 | |||||
| Lovett (2017) | Direct Submission | PLoS ONE 12 (2), E0170548 (2017) | 3.51e-170 | 106 | 11 | ART | PBMC | SGS | Reservoir |
| Loxton (2016) | Sequence Analysis of Near Full-Length HIV Type 1 Subtype D Primary Strains Isolated in Cape Town, South Africa, from 1984 to 1986 | AIDS Res. Hum. Retroviruses 21 (5), 410-413 (2005) | 2.9e-151 | 4 | |||||
| Lu (2019) | Relationship between intact HIV-1 proviruses in circulating CD4(+) T cells and rebound viruses emerging during treatment interruption | Proc. Natl. Acad. Sci. U.S.A. 115 (48), E11341-E11 | 4.34e-156 | 1585 | 12 | ART | Plasma; PBMC; QVOA | SGS | Reservoir |
| Lu (2017) | HIV-1 genetic evolution and recombinant patterns among the newly diagnosed HIV-1 individuals in Hebei Province, China | Unpublished | 8.38e-158 | 20 | Unpublished | ||||
| Lu (2021) | Genome mosaic structure of two novel HIV-1 recombinant forms (CRF01_AE/B) among the recently infected men who have sex with men in Hebei, China | Unpublished | 8.68e-142 | 2 | Unpublished | ||||
| Lu (2022) | Novel recombinant forms | Unpublished | 9.47e-147 | 3 | |||||
| Lu (2022) | Identification of two novel HIV-1 recombinant forms originated from CRF01_AE and subtype B in Hebei, China | Unpublished | 3.05e-142 | 2 | |||||
| Lu (2023) | CRF01_AE/CRF07_BC recombinant forms | Unpublished | 1.87e-144 | 5 | |||||
| Lu (2023) | Identification of a new HIV-1 recombinant forms (CRF68_01B/A1) among the recently infected men who have sex with men in Hebei, China | Unpublished | 3.03e-141 | 1 | |||||
| Lu (2023) | Identification of CRF01_AE/C recombinant forms | Unpublished | 5.08e-145 | 1 | |||||
| Lu (2023) | Near-full-length genome analysis of a HIV-1 CRF01_AE/B recombinant strain among men who have sex with men in Chengde City, China | Unpublished | 5.1e-147 | 1 | |||||
| Lu (2016) | Surveillance of Transmitted Drug Resistance in HIV-1-Infected Youths Aged 16 to 25 Years, a Decade After Scale-up of Antiretroviral Therapy in Hebei, China | AIDS Res. Hum. Retroviruses (2016) In press | 6.07e-154 | 5 | |||||
| Lu (2017) | Regional transmission pattern of HIV-1 Non-CRF01_AE strains circulating in Hebei province, China | AIDS Res. Hum. Retroviruses (2017) In press | 9.29e-163 | 313 | 254 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Lu (2016) | Recombinant patterns of nine novel HIV-1 recombinant strains identified in Hebei province, China | AIDS Res. Hum. Retroviruses (2016) In press | 4.79e-154 | 9 | |||||
| Luk (2008) | Near full-length genome characterization of an HIV type 1 CRF25_cpx strain from Cameroon | AIDS Res. Hum. Retroviruses 24 (10), 1309-1314 (20 | 6.05e-143 | 1 | |||||
| Luk (2015) | Utility of Unbiased Next-Generation Sequencing for HIV Surveillance | PLoS One. 2015 Nov 23;10(11):e0141723 | 4.89e-146 | 25 | 25 | Uncertain | Plasma | NGS | Molecular epidemiology |
| Luk (2015) | Utility of Unbiased Next-Generation Sequencing for Characterization of HIV Diversity | Unpublished | 3.17e-145 | 9 | Unpublished | ||||
| Luk (2007) | Near full-length genome characterization of three additional HIV type 1 CRF13_cpx strains from Cameroon | AIDS Res. Hum. Retroviruses 23 (2), 297-302 (2007) | 4.62e-144 | 3 | |||||
| Lunar (2020) | HIV-1 Unique Recombinant Forms Identified in Slovenia and Their Characterization by Near Full-Length Genome Sequencing | Viruses 12 (1), E63 (2020) | 1.15e-149 | 13 | |||||
| Lungu (2017) | Genome characterization of HIV-2 biological clones with divergent replication capacities | Unpublished | 7.54e-105 | 13 | Unpublished | ||||
| Luthuli (2023) | Generation and characterization of infectious molecular clones of transmitted/founder HIV-1 subtype C viruses | Virology 583, 14-26 (2023) | 4.51e-148 | 21 | |||||
| Ma (2024) | Identification of three a Novel HIV-1 Recombinant Form comprising CRF01_AE and C among men who have sex with men in Hebei province, China | Unpublished | 2.95e-145 | 2 | |||||
| Mack (2017) | Efficient Vpu-mediated tetherin antagonism by an HIV-1 group O strain | J. Virol. (2017) In press | 1.76e-124 | 1 | |||||
| Mahasha (2014) | Differential Distribution and Evolution of HIV-1 RNA Variants in the Gastrointestinal Tract of Antiretroviral Naive African AIDS Patients with Diarrhea and (or) Weight Loss | Unpublished | 2.34e-160 | 159 | Unpublished | ||||
| Maksimenko (2022) | Circulation of multiple HIV-1 unique recombinant forms A/B in Krasnoyarsk Region, Russia | Unpublished | 4.86e-144 | 11 | |||||
| Maksimenko (2024) | Expanding HIV-1 diversity in Russia: novel circulating recombinant form between subtypes a6 and b (crf147_a6b) | Unpublished | 7.17e-143 | 2 | |||||
| Malboeuf (2013) | Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification | Nucleic Acids Res. 41 (1), E13 (2013) | 6.04e-154 | 13 | |||||
| Mamadou (2003) | Predominance of CRF01-AG and CRF06-cpx in Niger, West Africa | AIDS Res Hum Retroviruses. 2002 Jul 1;18(10):723-6 | 3.91e-165 | 110 | 110 | Naive | PBMC | Direct PCR | Molecular epidemiology |
| Mamadou (2005) | Emergence of complex and diverse CRF02-AG/CRF06-cpx recombinant HIV type 1 strains in Niger, West Africa | AIDS Res. Hum. Retroviruses 19 (1), 77-82 (2003) | 3.28e-147 | 3 | |||||
| Mampe (2022) | Direct Submission | Submitted (15-NOV-2021) Infectious Disease, Univer | 1.46e-150 | 1 | |||||
| Manak (2012) | Pilot Studies for Development of an HIV Subtype Panel for Surveillance of Global Diversity | AIDS Res. Hum. Retroviruses 28 (6), 594-606 (2012) | 1.92e-166 | 77 | 59 | Mixed | Cultured Plasma | SGS | Molecular epidemiology |
| Manasa (2017) | Evolution of gag and gp41 in Patients Receiving Ritonavir-Boosted Protease Inhibitors | Sci Rep 7 (1), 11559 (2017) | 5.57e-170 | 88 | 61 | ART | Plasma | Direct PCR | Miscellaneous |
| Manickam (2016) | Near full length HIV-1 genome sequences from India | Unpublished | 2.05e-148 | 10 | Unpublished | ||||
| Mant (2009) | HIV-1 Gag variation during disease progression | Unpublished | 7.03e-171 | 347 | Unpublished | ||||
| Maponga (2025) | Looking for a needle in a haystack: Nanopore sequencing of a full-length Simian immunodeficiency virus (SIV) from a chacma baboon (Papio ursinus) | Unpublished | 1.43e-98 | 1 | |||||
| Margot (2016) | Phenotypic Susceptibility to Bevirimat in Isolates from HIV-1-Infected Patients without Prior Exposure to Bevirimat | Antimicrob. Agents Chemother. 54 (6), 2345-2353 (2 | 1.33e-168 | 31 | 31 | Mixed | Plasma | Molecular clones | Molecular epidemiology |
| Marie (2019) | Gag-protease coevolution shapes the outcome of Lopinavir-inclusive treatment regimens in chronically infected HIV-1 subtype C patients | Bioinformatics (2019) In press | 1.11e-163 | 58 | 58 | ART | Plasma | Direct PCR | Miscellaneous |
| Marques (2018) | Potential overestimation of HIV-1 sub-subtype F1 circulation in Rio de Janeiro, Brazil | Mem. Inst. Oswaldo Cruz 113 (8), e170483 (2018) | 2.14e-163 | 50 | 50 | Uncertain | PBMC | Direct PCR | Molecular epidemiology |
| Martin (2014) | Early immune adaptation in HIV-1 revealed by population-level approaches | Retrovirology 11 (1), 64 (2014) | 2.8e-170 | 168 | 168 | Naive | Plasma | Direct PCR | HLA |
| Masharsky (2005) | Molecular cloning and analysis of full-length genome of HIV type 1 strains prevalent in countries of the former Soviet Union | AIDS Res. Hum. Retroviruses 19 (10), 933-939 (2003 | 7.03e-143 | 9 | |||||
| Mason (2016) | Targeted Isolation of Antibodies Directed against Major Sites of SIV env Vulnerability | PLoS Pathog. 12 (4), E1005537 (2016) | 5.18e-104 | 5 | |||||
| Massanella (2024) | Inducibility and distribution of HIV proviruses in early treated Thai children on suppressive ART | Unpublished | 2.4e-158 | 806 | |||||
| Matsuda (2017) | SIVsm804E-CL757 molecular clone sequence | Unpublished | 6.48e-97 | 1 | Unpublished | ||||
| Matsuoka-Aizawa (2002) | Isolation and molecular characterization of a nelfinavir (NFV)-resistant human immunodeficiency virus type 1 that exhibits NFV-dependent enhancement of replication | J. Virol. 77 (1), 318-327 (2003) | 7.83e-165 | 3 | |||||
| Matsuoka (2016) | Modulation of HIV-1 infectivity and cyclophilin A-dependence by Gag sequence and target cell type | Retrovirology 6, 21 (2009) | 1.81e-161 | 3 | |||||
| Matthews (2016) | Central role of reverting mutations in HLA associations with human immunodeficiency virus set point | J. Virol. 82 (17), 8548-8559 (2008) | 1.39e-166 | 652 | 652 | Naive | Plasma | Direct PCR | HLA |
| Mattiuzzo (2013) | Upregulation of TRIM5alpha gene expression after live-attenuated simian immunodeficiency virus vaccination in Mauritian cynomolgus macaques, but TRIM5alpha genotype has no impact on virus acquisition or vaccination outcome | J. Gen. Virol. 94 (PT 3), 606-611 (2013) | 1.07e-112 | 1 | |||||
| McCarthy (2016) | Phylogeny and History of the Lost SIV from Crab-Eating Macaques: SIVmfa | PLoS ONE 11 (7), E0159281 (2016) | 5.84e-99 | 1 | |||||
| McClutchan (2016) | Precise mapping of recombination breakpoints suggests a common parent of two BC recombinant HIV type 1 strains circulating in China | AIDS Res. Hum. Retroviruses 18 (15), 1135-1140 (20 | 1.26e-144 | 1 | |||||
| McCutchan (1993) | Genetic analysis of HIV-1 isolates from Zambia and an expanded phylogenetic tree for HIV-1 | J. Acquir. Immune Defic. Syndr. 5 (5), 441-449 (19 | 1.88e-159 | 3 | |||||
| McCutchan (2016) | HIV type 1 circulating recombinant form CRF09_cpx from west Africa combines subtypes A, F, G, and may share ancestors with CRF02_AG and Z321 | AIDS Res. Hum. Retroviruses 20 (8), 819-826 (2004) | 7.86e-147 | 4 | |||||
| McCutchan (2016) | In-depth analysis of a heterosexually acquired human immunodeficiency virus type 1 superinfection: evolution, temporal fluctuation, and intercompartment dynamics from the seronegative window period through 30 months postinfection | J. Virol. 79 (18), 11693-11704 (2005) | 2e-153 | 112 | 1 | Naive | PBMC | Molecular clones | Acute infection |
| McCutchan (2016) | Genetic variants of HIV-1 in Thailand | AIDS Res. Hum. Retroviruses 8 (11), 1887-1895 (199 | 3.38e-157 | 2 | |||||
| McInally (2025) | Comparison of viral phenotype and inflammatory biomarker responses in HIV-1 acute subtype A and C infections | Unpublished | 1.48e-145 | 6 | |||||
| McIntosh (2016) | Nucleotide sequence of a Cambridge isolate of human immunodeficiency virus type 1 | Unpublished | 3.42e-155 | 1 | Unpublished | ||||
| McLaughlin (2016) | Sequence Diversity of HIV-1 Genomes from the HIV Vaccine Trials Network | Unpublished | 3.17e-152 | 4 | Unpublished | ||||
| McMyn (2023) | The latent reservoir of inducible, infectious HIV-1 does not decrease despite decades of antiretroviral therapy | J Clin Invest 133 (17), e171554 (2023) | 1.29e-145 | 5 | |||||
| Melo (2012) | Characterization of Primary Isolates of HIV Type 1 CRF28_BF, CRF29_BF, and Unique BF Recombinants Circulating in Sao Paulo, Brazil | AIDS Res. Hum. Retroviruses 28 (9), 882-888 (2012) | 6.61e-152 | 10 | |||||
| Meloni (2016) | Distinct human immunodeficiency virus type 1 subtype A virus circulating in West Africa: sub-subtype A3 | J. Virol. 78 (22), 12438-12445 (2004) | 2.48e-145 | 5 | |||||
| Mendes Da Silva (2021) | Genetic Characterization of a New HIV-1 Sub-Subtype A in Cabo Verde, Denominated A8 | Viruses 13 (6), 1093 (2021) | 7.29e-148 | 3 | Unpublished | ||||
| Mendoza (2020) | Antigen responsive CD4+ T cell clones contribute to the HIV-1 latent reservoir | J. Exp. Med. (2020) In press | 1.26e-168 | 1830 | 8 | ART | PBMC | SGS | Reservoir |
| Meng (2016) | Construction and characterization of an infectious molecular clone of HIV type 1 CRF07_BC | AIDS Res. Hum. Retroviruses 24 (2), 259-264 (2008) | 6.11e-145 | 2 | |||||
| Meng (2012) | Five new CRF07_BC near full-length sequences isolated from Sichuan, China | Unpublished | 1.81e-147 | 7 | Unpublished | ||||
| Meng (2013) | A New Migration Map of HIV-1 CRF07_BC in China: Analysis of Sequences from 12 Provinces over a Decade | PLoS ONE 7 (12), E52373 (2012) | 1.53e-161 | 16 | |||||
| Meng (2016) | Genetic characterization of three newly isolated CRF07_BC near full-length genomes in China | AIDS Res. Hum. Retroviruses 23 (8), 1049-1054 (200 | 1.67e-145 | 3 | |||||
| Metsky (2019) | Capturing diverse microbial sequence with comprehensive and scalable probe design | Unpublished | 2.68e-153 | 2 | Unpublished | ||||
| Miao (2018) | Characterization of a Novel HIV-1 Circulating Recombinant Form, CRF01_AE/B'/C (CRF96_cpx), in Yunnan, China | AIDS Res. Hum. Retroviruses (2018) In press | 8.83e-147 | 2 | |||||
| Miao (2010) | Sequence and characterization of full-length genome of two HIV-1 strains isolated from two infected patients in China | Unpublished | 6.24e-145 | 1 | Unpublished | ||||
| Miguels (2016) | The differential ability of HLA B*5701+ long-term nonprogressors and progressors to restrict human immunodeficiency virus replication is not caused by loss of recognition of autologous viral gag sequences | J. Virol. 77 (12), 6889-6898 (2003) | 8.55e-155 | 218 | 27 | Mixed | Plasma; PBMC | SGS | Reservoir |
| Mikhail (2006) | Full length genome analysis of HIV-1 viral evolution, and date of origin in an American cohort | Unpublished | 1.06e-155 | 34 | Unpublished | ||||
| Miura (2006) | HIV-1 viremia controllers | Unpublished | 3.91e-164 | 1 | Unpublished | ||||
| Miura (2011) | Coordinately linked sites in HIV evolution reveal regions of immunologic vulnerability | Unpublished | 4.43e-169 | 18 | Unpublished | ||||
| Miura (2016) | Impaired fitness of acute/early viruses in persons who become HIV controllers | J Virol. 2010 Aug;84(15):7581-91 | 7.42e-169 | 31 | 18 | Naive | Plasma | Uncertain | Miscellaneous |
| Miura (2008) | HLA-associated alterations in replication capacity of chimeric NL4-3 viruses carrying gag-protease from elite controllers of human immunodeficiency virus type 1 | J. Virol. 83 (1), 140-149 (2009) | 7.61e-169 | 45 | 45 | Naive | Plasma | Molecular clones | Reservoir |
| Miura (2016) | Genetic characterization of human immunodeficiency virus type 1 in elite controllers: lack of gross genetic defects or common amino acid changes | J. Virol. 82 (17), 8422-8430 (2008) | 1.31e-169 | 53 | 5 | Naive | Plasma; PBMC | Direct PCR | Reservoir |
| Miura (2016) | HLA-B57/B*5801 human immunodeficiency virus type 1 elite controllers select for rare gag variants associated with reduced viral replication capacity and strong cytotoxic T-lymphotye recognition | J. Virol. 83 (6), 2743-2755 (2009) | 1.6e-167 | 17 | |||||
| Mochizuki (2016) | An infectious DNA clone of HIV type 1 subtype C | AIDS Res. Hum. Retroviruses 15 (14), 1321-1324 (19 | 4.17e-147 | 1 | |||||
| Mohammadi (2024) | Viral and host mediators of non-suppressible HIV-1 viremia | Nat Med 29 (12), 3212-3223 (2023) | 1.21e-150 | 36 | |||||
| Mohri (2016) | Viral envelope is a major determinant of enhanced fitness of a multidrug-resistant HIV-1 variant | J. Acquir. Immune Defic. Syndr. 68 (5), 487-494 (2 | 1.56e-154 | 4 | |||||
| Moisan (2019) | In vivo emergence of an HIV-1/MO recombinant revealed undiagnosed HIV-1/M+O co-infection | Clin. Microbiol. Infect. (2020) In press | 6.8e-122 | 1 | |||||
| Mokili (2016) | Identification of a novel clade of human immunodeficiency virus type 1 in democratic republic of congo | AIDS Res. Hum. Retroviruses 18 (11), 817-823 (2002 | 4.23e-147 | 1 | |||||
| Monaco (2016) | The Balance Between Transmitted Pre-adapted and Non-adapted Polymorphisms in the Gag Protein is a Major Determinant of HIV-1 Disease Progression | J Exp Med. 2016 Sep 19;213(10):2049-63 | 6.08e-162 | 46 | 46 | Naive | Plasma | Direct PCR | HLA |
| Montavon (2000) | Most env and gag subtype A HIV-1 viruses circulating in West and West Central Africa are similar to the prototype AG recombinant virus IBNG | J. Acquir. Immune Defic. Syndr. 23 (5), 363-374 (2 | 3.68e-166 | 161 | 219 | Naive | PBMC | Direct PCR | Molecular epidemiology |
| Montavon (2006) | The identification of a complex A/G/I/J recombinant HIV type 1 virus in various West African countries | AIDS Res. Hum. Retroviruses 15 (18), 1707-1712 (19 | 8.24e-149 | 3 | |||||
| Montavon (2016) | Identification of a new circulating recombinant form of HIV type 1, CRF11-cpx, involving subtypes A, G, J, and CRF01-AE, in Central Africa | AIDS Res. Hum. Retroviruses 18 (3), 231-236 (2002) | 3.24e-145 | 3 | |||||
| Montavon (2016) | Two new complete genomes of HIV-1 recombinant AGJ BFP90-like circulating in Mali and Senegal | Unpublished | 2.65e-148 | 2 | Unpublished | ||||
| Monteiro (2016) | Genetic variability of human immunodeficiency virus-1 in Bahia state, Northeast, Brazil: high diversity of HIV genotypes | J. Med. Virol. 81 (3), 391-399 (2009) | 9.01e-173 | 32 | 32 | Uncertain | PBMC | Direct PCR | Molecular epidemiology |
| Morcilla (2021) | HIV-1 Genomes Are Enriched in Memory CD4(+) T-Cells with Short Half-Lives | mBio, e0244721 (2021) In press | 9.67e-170 | 385 | |||||
| Moscona (2025) | Newly designed amplicons-based Method for Near-Full-Length Genome (NFLG) Sequencing of HIV-1 Group M Recombinant Forms | Unpublished | 1.98e-149 | 28 | |||||
| Moskaleychik (2016) | [Rapid spread of the HIV-1 circular recombinant CRF02-AG in Russia and neighboring countries] | Vopr. Virusol. 60 (6), 14-19 (2015) | 1.14e-144 | 4 | |||||
| Moskovljevic (2024) | Cognate antigen engagement induces HIV-1 expression in cd4+ t cells from people on long-term art | Unpublished | 1.99e-148 | 154 | |||||
| Mothe (2012) | CTL Responses of High Functional Avidity and Broad Variant Cross-Reactivity Are Associated with HIV Control | PLoS ONE 7 (1), E29717 (2012) | 1.37e-172 | 22 | |||||
| Muenchhoff (2014) | Evaluation of the NucliSens EasyQ v2.0 Assay in Comparison with the Roche Amplicor v1.5 and the Roche CAP/CTM HIV-1 Test v2.0 in Quantification of C-Clade HIV-1 in Plasma | PLoS ONE 9 (8), E103983 (2014) | 2.14e-166 | 71 | 44 | Naive | Plasma | Molecular clones; SGS | Miscellaneous |
| Mullins (2013) | HIV-1 superinfection with a triple class drug resistant strain in a patient successfully controlled with antiretroviral treatment | AIDS. 2014 Jul 31;28(12):1840-4 | 6.27e-166 | 35 | 2 | ART | Uncertain | Uncertain | Miscellaneous |
| Mullins (2016) | Mutation of HIV-1 Genomes in a Clinical Population Treated with the Mutagenic Nucleoside KP1461 | PLoS ONE 6 (1), E15135 (2011) | 2.94e-159 | 8210 | 20 | ART | Plasma | SGS | Miscellaneous |
| Mullins (2025) | Early Evolutionary Dynamics of HIV infection | Unpublished | 1.58e-166 | 41609 | |||||
| Munchak (2023) | Genetic diversity of p24 protein in HIV-1 variants circulating in Rassia | Unpublished | 1.87e-165 | 30 | |||||
| Munoz-Nieto (2008) | HIV type 1 intersubtype recombinants during the evolution of a dual infection with subtypes B and G | AIDS Res. Hum. Retroviruses 24 (2), 337-343 (2008) | 1.93e-145 | 9 | |||||
| Murzakova (2019) | Molecular Epidemiology of HIV-1 Subtype G in the Russian Federation | Viruses 11 (4), 348 (2019) | 1.25e-146 | 11 | Unpublished | ||||
| Musyoki (2012) | Genetic Characterization of HIV Before Widespread Testing of HIV Vaccine Candidates at a Clinical Trial Site in Pretoria, South Africa | AIDS Res. Hum. Retroviruses 28 (9), 931-938 (2012) | 4.53e-150 | 39 | 39 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Mwaengo (2016) | Molecular cloning and characterization of viruses isolated from chimpanzees with pathogenic human immunodeficiency virus type 1 infections | J. Virol. 72 (11), 8976-8987 (1998) | 3.75e-151 | 2 | |||||
| Nadai (2016) | HIV-1 epidemic in the Caribbean is dominated by subtype B | PLoS ONE 4 (3), E4814 (2009) | 1.64e-153 | 15 | |||||
| Nagai (2012) | Construction and characterization of infectious molecular clones deriver from HIV-1, URF between subtype B and CRF01_AE, underestimated by Cobas TaqMan version 1 HIV-1 RNA quantification assay | Unpublished | 6.2e-148 | 2 | Unpublished | ||||
| Nagai (2012) | Construction and characterization of infectious molecular clones derived from japanese blood donors | Unpublished | 2.92e-153 | 2 | Unpublished | ||||
| Nagai (2012) | Molecular characterization of infectious molecular clones derived from HIV-1 CRF08_BC isolates in Yunnan, China | Unpublished | 3.82e-147 | 6 | Unpublished | ||||
| Narong (2016) | Developement HIV genetic variation in antiretroviral drug treated Thais during 2009-2011 | Unpublished | 1.69e-154 | 35 | Unpublished | ||||
| Nasioulas (2016) | Molecular analysis of the full-length genome of HIV type 1 subtype I: evidence of A/G/I recombination | AIDS Res. Hum. Retroviruses 15 (8), 745-758 (1999) | 4.12e-145 | 2 | |||||
| Nazziwa (2024) | Higher HIV-1 evolutionary rate is associated with cytotoxic t lymphocyte escape mutations in infants | Unpublished | 4.03e-160 | 1145 | |||||
| Ndiaye (2013) | HIV Type 1 Subtype C Remains the Predominant Subtype in Men Having Sex with Men in Senegal | AIDS Res. Hum. Retroviruses 29 (9), 1265-1272 (201 | 2.81e-156 | 39 | 39 | Naive | PBMC | Direct PCR | Molecular epidemiology |
| Ndung'u (2016) | Construction and analysis of an infectious human Immunodeficiency virus type 1 subtype C molecular clone | J. Virol. 75 (11), 4964-4972 (2001) | 1.63e-143 | 1 | |||||
| Ndung'u (2016) | Molecular cloning and biological characterization of full-length HIV-1 subtype C from Botswana | Virology 278 (2), 390-399 (2000) | 1.63e-143 | 4 | |||||
| Neilson (1999) | Subtypes of human immunodeficiency virus type 1 and disease stage among women in Nairobi, Kenya | J. Virol. 73 (5), 4393-4403 (1999) | 1.24e-151 | 2 | |||||
| Neogi (2017) | Recent increased identification and transmission of HIV-1 unique recombinant forms in Sweden | Sci Rep 7 (1), 6371 (2017) | 5.29e-154 | 83 | 148 | ART | Plasma | Direct PCR; NGS | Molecular epidemiology |
| Nerrienet (2016) | Simian immunodeficiency virus infection in wild-caught chimpanzees from cameroon | J. Virol. 79 (2), 1312-1319 (2005) | 2.29e-136 | 1 | |||||
| Neumann (1995) | Restriction of human immunodeficiency virus type 1 production in a human astrocytoma cell line is associated with a cellular block in Rev function | J. Virol. 69 (4), 2159-2167 (1995) | 6.73e-156 | 1 | |||||
| Ng (2017) | Genome Sequences of a Novel HIV-1 Circulating Recombinant Form (CRF) 77_cpx from Malaysia | Unpublished | 3.76e-144 | 4 | Unpublished | ||||
| Ng (2012) | Genome Sequence of a Novel HIV-1 Circulating Recombinant Form 54_01B from Malaysia | J. Virol. 86 (20), 11405-11406 (2012) | 1.27e-150 | 2 | |||||
| Ng (2012) | Identification of New CRF51_01B in Singapore Using Full Genome Analysis of Three HIV Type 1 Isolates | AIDS Res. Hum. Retroviruses 28 (5), 527-530 (2012) | 2.91e-151 | 3 | |||||
| Niama (2009) | CRF45_AKU, a circulating recombinant from Central Africa, is probably the common ancestor of HIV type 1 MAL and HIV type 1 NOGIL | AIDS Res. Hum. Retroviruses 25 (12), 1345-1353 (20 | 1.85e-146 | 4 | |||||
| Niama (2016) | HIV-1 subtypes and recombinants in the Republic of Congo | Infect. Genet. Evol. 6 (5), 337-343 (2006) | 1.65e-166 | 78 | 114 | Naive | PBMC | Direct PCR | Molecular epidemiology |
| Nicolas (2022) | Genotypic and Phenotypic Diversity of the Replication-Competent HIV Reservoir in Treated Patients | Microbiol Spectr, e0078422 (2022) In press | 1.94e-154 | 54 | |||||
| Niessl (2019) | Combination anti-HIV-1 antibody therapy is associated with increased virus-specific T cell immunity | Nat Med. 2020 Feb;26(2):222-227 | 4.01e-170 | 148 | 9 | ART | Plasma; PBMC | SGS | Reservoir |
| Ning (2013) | Near Full-Length Genome Identification of a Novel HIV Type 1 B'/C Recombinant Isolate JL100091 in Jilin, China | AIDS Res. Hum. Retroviruses 29 (12), 1609-1612 (20 | 3.3e-152 | 1 | |||||
| Nomura (2013) | Significant Reductions in Gag-Protease-Mediated HIV-1 Replication Capacity during the Course of the Epidemic in Japan | J. Virol. 87 (3), 1465-1476 (2013) | 1.61e-169 | 174 | 156 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Norris (2016) | Fine specificity and cross-clade reactivity of HIV type 1 Gag-specific CD4+ T cells | AIDS Res. Hum. Retroviruses 20 (3), 315-325 (2004) | 6.52e-172 | 22 | |||||
| Norstrom (2012) | Combination of immune and viral factors distinguish low-risk versus high-risk HIV-1 disease progression in HLA-B*5701 subjects | J. Virol. (2012) In press | 2.2e-172 | 758 | 6 | Naive | Plasma; PBMC | SGS | HLA |
| Nosik (2023) | Direct Submission | Submitted (10-MAY-2023) HIV diagnostic and molecul | 2.15e-152 | 9 | |||||
| Novelli (2016) | Construction and characterization of a full-length HIV-1(92UG001) subtype D infectious molecular clone | AIDS Res. Hum. Retroviruses 18 (1), 85-88 (2002) | 8.88e-149 | 1 | |||||
| Novembre (1993) | Multiple viral determinants contribute to pathogenicity of the acutely lethal simian immunodeficiency virus SIVsmmPBj variant | J. Virol. 67 (5), 2466-2474 (1993) | 2.79e-96 | 3 | |||||
| Novembre (1998) | Isolation and characterization of a neuropathogenic simian immunodeficiency virus derived from a sooty mangabey | J. Virol. 72 (11), 8841-8851 (1998) | 3.9e-103 | 1 | |||||
| Novembre (2016) | SIV from stump-tailed macaques: molecular characterization of a highly transmissible primate lentivirus | Virology 186 (2), 783-787 (1992) | 1.45e-101 | 1 | |||||
| Novitsky (2000) | HIV type 1 A/J recombinant with a pronounced pol gene mosaicism | AIDS Res. Hum. Retroviruses 16 (10), 1015-1020 (20 | 1.38e-141 | 1 | |||||
| Novitsky (2001) | Molecular cloning and phylogenetic analysis of human immunodeficiency virus type 1 subtype C: a set of 23 full-length clones from Botswana | J. Virol. 73 (5), 4427-4432 (1999) | 2.07e-148 | 22 | |||||
| Novitsky (2013) | Intra-host evolutionary rates in HIV-1C env and gag during primary infection | Infect. Genet. Evol. (2013) In press | 1.89e-163 | 253 | 32 | Mixed | Plasma | SGS | Acute infection |
| Novitsky (2016) | Timing constraints of in vivo gag mutations during primary HIV-1 subtype C infection | PLoS ONE 4 (11), E7727 (2009) | 3.83e-164 | 2521 | 42 | Naive | Plasma; PBMC | SGS | Acute infection |
| Novitsky (2016) | Human immunodeficiency virus type 1 subtype C molecular phylogeny: consensus sequence for an AIDS vaccine design? | J. Virol. 76 (11), 5435-5451 (2002) | 1.57e-148 | 42 | 42 | Naive | Cultured PBMC | Molecular clones | Molecular epidemiology |
| Novitsky (2016) | HIV-1 subtype C/Denv/C recombinant from Botswana | Unpublished | 4.4e-144 | 1 | Unpublished | ||||
| Ntale (2012) | Temporal Association of HLA-B*81:01- and HLA-B*39:10-Mediated HIV-1 p24 Sequence Evolution with Disease Progression | J. Virol. 86 (22), 12013-12024 (2012) | 3.94e-162 | 73 | 62 | Naive | Plasma | Direct PCR | HLA |
| O'Brien (1996) | HIV-1 tropism for mononuclear phagocytes can be determined by regions of gp120 outside the CD4-binding domain | Nature 348 (6296), 69-73 (1990) | 6.85e-154 | 1 | |||||
| O'Connell (2010) | Prolonged Control of an HIV Type 1 Escape Variant Following Treatment Interruption in an HLA-B*27-Positive Patient | AIDS Res. Hum. Retroviruses 26 (12), 1307-1311 (20 | 1.25e-163 | 4 | |||||
| O'Connell (2016) | Control of HIV-1 in elite suppressors despite ongoing replication and evolution in plasma virus | J. Virol. 84 (14), 7018-7028 (2010) | 1.06e-171 | 201 | 6 | Naive | Plasma; PBMC | SGS | Reservoir |
| O'Connell (2016) | HIV-1 Gag Evolution in Recently Infected HLA-B*57 Patients with Low Level Viremia | Unpublished | 2.33e-164 | 11 | Unpublished | ||||
| O'Connor (2016) | A dominant role for CD8+-T-lymphocyte selection in simian immunodeficiency virus sequence variation | J. Virol. 78 (24), 14012-14022 (2004) | 6.91e-100 | 26 | NonM, HIV2, SIV | ||||
| Obuku (2015) | Macrophage inflammatory protein-1 beta and interferon gamma responses in Ugandans with HIV-1 acute/early infections | AIDS Res. Hum. Retroviruses (2015) In press | 1.34e-162 | 17 | |||||
| Ochsenbauer (2012) | Generation of Transmitted/Founder HIV-1 Infectious Molecular Clones and Characterization of Their Replication Capacity in CD4 T Lymphocytes and Monocyte-Derived Macrophages | J. Virol. 86 (5), 2715-2728 (2012) | 3e-155 | 43 | 10 | Naive | Plasma; PBMC | SGS | Acute infection |
| Oelrichs (1999) | Genomic sequence of HIV-1 from four members of the Sydney Blood Bank Cohort of long term non-progressors | Unpublished | 3.49e-153 | 5 | Unpublished | ||||
| Oelrichs (1999) | Sequence of HIV-1 subtype B gag gene poorly detected by both RT-PCR and P24 monoclonal during symptomatic seroconversion | Unpublished | 7.13e-162 | 1 | Unpublished | ||||
| Oelrichs (2001) | A novel subtype A/G/J recombinant full-length HIV type 1 genome from Burkina Faso | AIDS Res. Hum. Retroviruses 14 (16), 1495-1500 (19 | 3.15e-145 | 1 | |||||
| Oelrichs (2001) | Rapid full-length genomic sequencing of two cytopathically heterogeneous Australian primary HIV-1 isolates | J. Biomed. Sci. 7 (2), 128-135 (2000) | 4.57e-155 | 2 | |||||
| Oelrichs (2016) | Near full-length proviral sequence of HIV-1 from an individual homozygous for the delta-32 CCR5 allele | Unpublished | 4.04e-151 | 1 | Unpublished | ||||
| Oelrichs (2016) | Full-length genomic sequence of an HIV type 1 subtype G from Kinshasa | AIDS Res. Hum. Retroviruses 15 (6), 585-589 (1999) | 9.02e-141 | 1 | |||||
| Ogawa (2019) | A Novel Drug-Resistant HIV-1 Circulating Recombinant Form CRF76_01B Identified by Near Full-Length Genome Analysis | AIDS Res. Hum. Retroviruses 32 (3), 284-289 (2016) | 1.92e-149 | 4 | |||||
| Oguzie (2023) | Metagenomics identifies emerging and re-emerging viruses in Nigerian cohorts with acute febrile illnesses, including pathogens of global concern | Unpublished | 5.16e-142 | 3 | |||||
| Ojwach (2022) | Limited sequence variation and similar phenotypic characteristics of HIV-1 subtype C Gag variants derived from the reservoir and pre-therapy plasma | Unpublished | 8.54e-164 | 206 | |||||
| Oka (2020) | Direct Submission | Submitted (05-FEB-2019) Department of Public Healt | 5.61e-151 | 5 | Unpublished | ||||
| Olivares (2016) | Complete sequence of an infectious molecular clone derived from a Spanish HIV type I isolate | AIDS Res. Hum. Retroviruses 14 (18), 1649-1651 (19 | 4.01e-152 | 1 | |||||
| Oliveira (2023) | Molecular and phylogenetic analysis of HIV-1 subtype C in Bahia state, northeastern Brazil | Unpublished | 4.25e-142 | 2 | |||||
| Omoding (2024) | Direct Submission | Submitted (28-MAR-2024) Department of Medicine, Di | 2.09e-169 | 404 | |||||
| Omondi (2025) | Prolonged non-suppressible viremia sustained by a clonally-expanded, genomically-defective provirus with an immune evasive HIV protein expression profile | Unpublished | 1.03e-140 | 15 | |||||
| Omondi (2025) | Prolonged non-suppressible viremia sustained by a clonally-expanded, genomically-defective provirus with an immune evasive HIV protein expression profile | Unpublished | 2.74e-154 | 267 | |||||
| Onyango (2010) | HIV-2 capsids distinguish high and low virus load patients in a West African community cohort | Vaccine 28 (SUPPL 2), B60-B67 (2010) | 1.28e-115 | 69 | 69 | Naive | Plasma; PBMC | Direct PCR | NonM, HIV2, SIV |
| Op de Coul (2016) | Independent introduction of transmissible F/D recombinant HIV-1 from Africa into Belgium and The Netherlands | Virology 270 (2), 267-277 (2000) | 4.73e-161 | 6 | |||||
| Oram (2016) | Nucleotide sequence of a Ugandan HIV-1 provirus reveals genetic diversity from other HIV-1 isolates | AIDS Res. Hum. Retroviruses 6 (9), 1073-1078 (1990 | 6.06e-144 | 1 | |||||
| Ou (2018) | Direct Submission | Submitted (22-MAY-2018) Division of Virology and I | 3.2e-145 | 1 | Unpublished | ||||
| Ou (2018) | Characterization of a New HIV-1 CRF01_AE/ B Recombinant Virus Form Among Men Who Have Sex with Men in Shanghai, China | Unpublished | 6.61e-149 | 1 | Unpublished | ||||
| Pace (2007) | Population level analysis of human immunodeficiency virus type 1 hypermutation and its relationship with APOBEC3G and vif genetic variation | J. Virol. 80 (18), 9259-9269 (2006) | 1.37e-158 | 120 | 120 | Uncertain | PBMC | Direct PCR | Miscellaneous |
| Palm (2015) | Cocirculation of Several Similar But Unique HIV-1 Recombinant Forms in Guinea-Bissau Revealed by Near Full-Length Genomic Sequencing | AIDS Res. Hum. Retroviruses 31 (9), 938-945 (2015) | 1.04e-144 | 6 | |||||
| Pandey (2013) | Molecular Characterization of Unique Intersubtype HIV Type 1 A1/C Recombinant Strain Circulating in Pune, India | AIDS Res. Hum. Retroviruses 29 (9), 1245-1253 (201 | 1.56e-154 | 9 | |||||
| Pandey (2015) | Genetic characterization of six full-length HIV-1 genomes from India reveals a monophyletic lineage of Indian sub-subtype A1 | Unpublished | 2.6e-141 | 9 | Unpublished | ||||
| Pandey (2015) | Characterization of Novel HIV-1 Intersubtype CRF01_AE/C and A1/C Recombinants from India | Genome Announc 3 (4), e00849-15 (2015) | 1.24e-146 | 14 | |||||
| Pando (2016) | First report of an HIV-1 triple recombinant of subtypes B, C and F in Buenos Aires, Argentina | Retrovirology 3, 59 (2006) | 5.62e-154 | 10 | |||||
| Pandrea (2016) | Analysis of partial pol and env sequences indicates a high prevalence of HIV type 1 recombinant strains circulating in Gabon | AIDS Res. Hum. Retroviruses 18 (15), 1103-1116 (20 | 6.83e-163 | 17 | |||||
| Papathanasopoulos (2016) | Full-length genome analysis of HIV-1 subtype C utilizing CXCR4 and intersubtype recombinants isolated in South Africa | AIDS Res. Hum. Retroviruses 18 (12), 879-886 (2002 | 1.05e-147 | 4 | |||||
| Papathanasopoulos (2016) | Full-length genome characterization of HIV type 1 subtype C isolates from two slow-progressing perinatally infected siblings in South Africa | AIDS Res. Hum. Retroviruses 19 (11), 1033-1037 (20 | 6.08e-146 | 2 | |||||
| Papuashvili (2016) | Characteristics of HIV-1 env V3 loop sequences for subtype A1 variant spread in Eastern Europe | Infect. Genet. Evol. 5 (1), 45-53 (2005) | 8.1e-144 | 1 | |||||
| Papuchon (2013) | Resistance Mutations and CTL Epitopes in Archived HIV-1 DNA of Patients on Antiviral Treatment: Toward a New Concept of Vaccine | PLoS ONE 8 (7), E69029 (2013) | 1.12e-166 | 9 | |||||
| Papuchon (2014) | Kinetics of HIV-1 CTL Epitopes Recognized by HLA I Alleles in HIV-Infected Individuals at Times near Primary Infection: The Provir/Latitude45 Study | PLoS ONE 9 (6), E100452 (2014) | 1.12e-168 | 21 | |||||
| Paraskevis (2016) | Molecular characterization of a recombinant HIV type 1 isolate (A/G/E/?): unidentified regions may be derived from parental subtype E sequences | AIDS Res. Hum. Retroviruses 16 (9), 845-855 (2000) | 3.69e-144 | 1 | |||||
| Paraskevis (2016) | Molecular characterization of a complex, recombinant human immunodeficiency virus type 1 (HIV-1) isolate (A/G/J/K/?): evidence to support the existence of a novel HIV-1 subtype | J. Gen. Virol. 82 (Pt 10), 2509-2514 (2001) | 6.21e-138 | 1 | |||||
| Pardons (2023) | Potent latency reversal by tat RNA enables multi-omic analysis of the HIV-1 reservoir | Unpublished | 2.25e-153 | 67 | |||||
| Park (2016) | Mutations in both gp120 and gp41 are responsible for the broad neutralization resistance of variant human immunodeficiency virus type 1 MN to antibodies directed at V3 and non-V3 epitopes | J. Virol. 72 (9), 7099-7107 (1998) | 1.86e-154 | 1 | |||||
| Parrish (2012) | Transmitted/Founder and Chronic Subtype C HIV-1 Use CD4 and CCR5 Receptors with Equal Efficiency and Are Not Inhibited by Blocking the Integrin alpha4beta7 | PLoS Pathog. 8 (5), E1002686 (2012) | 8.16e-148 | 102 | 14 | Naive | Plasma | SGS | Acute infection |
| Parrish (2013) | Phenotypic properties of transmitted founder HIV-1 | Proc. Natl. Acad. Sci. U.S.A. 110 (17), 6626-6633 | 1.46e-155 | 279 | 41 | Mixed | Plasma; Cultured PBMC | Uncertain | Acute infection |
| Parry (2016) | Gag determinants of fitness and drug susceptibility in protease inhibitor-resistant human immunodeficiency virus type 1 | J. Virol. 83 (18), 9094-9101 (2009) | 1.42e-166 | 2 | |||||
| Passaes (2009) | Near full-length genome characterization of HIV type 1 unique BC recombinant forms from Southern Brazil | AIDS Res. Hum. Retroviruses 25 (12), 1339-1344 (20 | 4.29e-152 | 4 | |||||
| Patino-Galindo (2018) | Genome-scale analysis of evolutionary rate and selection in a fast-expanding Spanish cluster of HIV-1 subtype F | Unpublished | 1.01e-147 | 3 | Unpublished | ||||
| Patro (2020) | Combined HIV-1 sequence and integration site analysis informs viral dynamics and allows reconstruction of replicating viral ancestors | Proc. Natl. Acad. Sci. U.S.A. 116 (51), 25891-2589 | 1.83e-159 | 12 | |||||
| Payne (2015) | Impact of HLA-driven HIV adaptation on virulence in populations of high HIV seroprevalence | Proc. Natl. Acad. Sci. U.S.A. 111 (50), E5393-E540 | 4.6e-166 | 133 | 133 | Naive | PBMC | Direct PCR | HLA |
| Peeters (2000) | Predominance of subtype A and G HIV type 1 in Nigeria, with geographical differences in their distribution | AIDS Res. Hum. Retroviruses 16 (4), 315-325 (2000) | 1.06e-152 | 37 | 37 | Naive | PBMC | Direct PCR | Molecular epidemiology |
| Peeters (2016) | Characterization of a highly replicative intergroup M/O human immunodeficiency virus type 1 recombinant isolated from a Cameroonian patient | J. Virol. 73 (9), 7368-7375 (1999) | 4.41e-144 | 1 | |||||
| Peng (2016) | Near Full-Length Genome Identification of a Novel HIV-1 Recombinant Form (CRF01_AE/CRF07_BC) in Zhejiang, China | AIDS Res. Hum. Retroviruses (2016) In press | 2.21e-144 | 1 | |||||
| Perez (2013) | Targeting of Conserved Gag-Epitopes in Early HIV Infection Is Associated with Lower Plasma Viral Load and Slower CD4(+) T Cell Depletion | AIDS Res. Hum. Retroviruses 29 (3), 602-612 (2013) | 2.47e-171 | 23 | |||||
| Permar (2013) | Clonal amplification and maternal-infant transmission of nevirapine-resistant HIV-1 variants in breast milk following single-dose nevirapine prophylaxis | Retrovirology 10, 88 (2013) | 4.71e-144 | 23 | |||||
| Pernas (2020) | Direct Submission | Submitted (25-MAY-2020) LRIR Virologia Molecular, | 1.14e-169 | 31 | Unpublished | ||||
| Pernas (2017) | Factors Leading to the Loss of Natural Elite Control of HIV-1 Infection | J. Virol. (2017) In press | 8.87e-174 | 131 | 31 | Naive | PBMC | Direct PCR | Reservoir |
| Persaud (2016) | Slow human immunodeficiency virus type 1 evolution in viral reservoirs in infants treated with effective antiretroviral therapy | AIDS Res. Hum. Retroviruses 23 (3), 381-390 (2007) | 8.95e-169 | 94 | 12 | ART | Plasma; PBMC | SGS | Reservoir |
| Pessoa (2014) | Identification of a Novel HIV-1 Circulating Recombinant Form (CRF72_BF1) in Deep Sequencing Data from Blood Donors in Southeastern Brazil | Genome Announc 2 (3), e00386-14 (2014) | 1.4e-147 | 5 | |||||
| Pessoa (2014) | Genetic Characterization of HIV-1 Subtype D Near-Full-Length Proviral Genomes by Illumina Massively Parallel Sequencing Technology | Genome Announc 2 (3), e00586-14 (2014) | 1.96e-150 | 2 | |||||
| Pessoa (2014) | Deep Sequencing of HIV-1 near Full-Length Proviral Genomes Identifies High Rates of BF1 Recombinants Including Two Novel Circulating Recombinant Forms (CRF) 70_BF1 and a Disseminating 71_BF1 among Blood Donors in Pernambuco, Brazil | PLoS ONE 9 (11), E112674 (2014) | 6.65e-153 | 23 | |||||
| Pessoa (2015) | Enhanced detection of viral diversity using partial and near full-length genomes of human immunodeficiency virus Type 1 provirus deep sequencing data from recently infected donors at four blood centers in Brazil | Transfusion (2014) In press | 9.41e-155 | 40 | 40 | Naive | PBMC | NGS | Molecular epidemiology |
| Pessoa (2016) | Ultra-Deep Sequencing of HIV-1 near Full-Length and Partial Proviral Genomes Reveals High Genetic Diversity among Brazilian Blood Donors | PLoS ONE 11 (3), E0152499 (2016) | 1.9e-167 | 192 | 192 | Naive | PBMC | NGS | Molecular epidemiology |
| Peters (2016) | An integrative bioinformatic approach for studying escape mutations in human immunodeficiency virus type 1 gag in the Pumwani Sex Worker Cohort | J. Virol. 82 (4), 1980-1992 (2008) | 2.58e-171 | 1346 | 468 | Naive | PBMC | Direct PCR | HLA |
| Petropoulos (2018) | Appendix 2: Retroviral taxonomy, protein structure, sequences, and genetic maps | (in) Coffin,J.M. (Ed.); RETROVIRUSES: 757; Cold Sp | 1.14e-155 | 1 | Unpublished | ||||
| Philpott (2016) | Human immunodeficiency virus type 1 genomic RNA sequences in the female genital tract and blood: compartmentalization and intrapatient recombination | J. Virol. 79 (1), 353-363 (2005) | 1.61e-154 | 20 | |||||
| Piantadosi (2018) | Metagenomic sequencing of HIV-1 in the blood and female genital tract reveals little quasispecies diversity during acute infection | J. Virol. (2018) In press | 6.73e-150 | 11 | Unpublished | ||||
| Pinzone (2020) | Longitudinal HIV sequencing reveals reservoir expression leading to decay which is obscured by clonal expansion | Nat Commun 10 (1), 728 (2019) | 1.32e-170 | 1306 | 4 | ART | Plasma; PBMC; QVOA | SGS | Reservoir |
| Piyasirisilp (2016) | A recent outbreak of human immunodeficiency virus type 1 infection in southern China was initiated by two highly homogeneous, geographically separated strains, circulating recombinant form AE and a novel BC recombinant | J. Virol. 74 (23), 11286-11295 (2000) | 1.24e-146 | 5 | |||||
| Plantier (2016) | Direct Submission | Submitted (15-OCT-2009) Virologie, Chu de Rouen, 1 | 7.56e-119 | 1 | Unpublished | ||||
| Plantier (2016) | A new human immunodeficiency virus derived from gorillas | Nat. Med. 15 (8), 871-872 (2009) | 1.13e-125 | 1 | |||||
| Pleva (2024) | Evolutionary characteristics of human immunodeficiency virus in Pakistan | Unpublished | 7.5e-161 | 7 | |||||
| Pollakis (2016) | Recombination of HIV type 1C (C'/C') in Ethiopia: possible link of EthHIV-1C' to subtype C sequences from the high-prevalence epidemics in India and Southern Africa | AIDS Res. Hum. Retroviruses 19 (11), 999-1008 (200 | 6.88e-154 | 12 | |||||
| Powell (2016) | Circulating Recombinant Form (CRF) 37_cpx: An Old Strain in Cameroon Composed of Diverse, Genetically Distant Lineages of Subtypes A and G | AIDS Res. Hum. Retroviruses 23 (7), 923-933 (2007) | 1.06e-141 | 1 | |||||
| Powell (2016) | Identification of a novel circulating recombinant form (CRF) 36_cpx in Cameroon that combines two CRFs (01_AE and 02_AG) with ancestral lineages of subtypes A and G | AIDS Res. Hum. Retroviruses 23 (8), 1008-1019 (200 | 9.13e-143 | 2 | |||||
| Price (2015) | Transmitted HIV type 1 drug resistance among individuals with recent HIV infection in East and Southern Africa | AIDS Res. Hum. Retroviruses 27 (1), 5-12 (2011) | 1.98e-151 | 1 | |||||
| Promkhatkaew (2005) | Enhancement of cell-mediated immune responses in mice by the model of a whole HIV-1 gag in live Mycobacterium bovis BCG as a vaccine candidate | Unpublished | 2.06e-159 | 1 | Unpublished | ||||
| Pujol-Hodge (2022) | Detection of HIV-1 Transmission Clusters from Dried Blood Spots within a Universal Test-and-Treat Trial in East Africa | Unpublished | 1.23e-161 | 1 | |||||
| Pujol-Hodge (2022) | Detection of HIV-1 Transmission Clusters from Dried Blood Spots within a Universal Test-and-Treat Trial in East Africa | Viruses 14 (8), 1673 (2022) | 8.37e-171 | 547 | |||||
| Qiu (2016) | Characterization of Five Nearly Full-Length Genomes of Early HIV Type 1 Strains in Ruili City: Implications for the Genesis of CRF07_BC and CRF08_BC Circulating in China | AIDS Res. Hum. Retroviruses 21 (12), 1051-1056 (20 | 8.29e-151 | 5 | |||||
| Queiros (2025) | Genetic Diversity in the Capsid Protein-Coding Region of HIV-1 Circulating in Benguela, Angola: Implications for Primary Resistance to the Novel Capsid Inhibitor Lenacapavir | Viruses 17 (5), 711 (2025) | 4.56e-169 | 77 | |||||
| Quesnel-Vallieres (2016) | Novel HIV-1 Recombinant Forms in Antenatal Cohort, Montreal, Quebec, Canada | Emerging Infect. Dis. 17 (2), 271-274 (2011) | 1.57e-145 | 3 | |||||
| Rachinger (2013) | Time-measured phylogenies of gag, pol and env sequence data reveal the direction and time interval of HIV-1 transmission | AIDS 25 (8), 1035-1039 (2011) | 2.9e-151 | 153 | 3 | Naive | Plasma | SGS | Acute infection |
| Rademeyer (2016) | Features of Recently Transmitted HIV-1 Clade C Viruses that Impact Antibody Recognition: Implications for Active and Passive Immunization | PLoS Pathog. 12 (7), E1005742 (2016) | 5.63e-147 | 4 | |||||
| Ragupathy (2016) | PCR amplicon free whole genome charecterization of Human immunodeficiency virus type -1 genotypes | Unpublished | 1.52e-151 | 27 | Unpublished | ||||
| Rahman (2021) | HIV-1 drug resistance and genotypes circulating among HIV-positive key populations in Bangladesh: 2016 update | Int J Infect Dis 104, 150-158 (2021) | 6.21e-157 | 1 | |||||
| Ramalingam (2019) | Investigation on the variations in the capsid amino acid sequence of HIV-2 subtype A, HIV-1 subtype C, its influence on the susceptibility to tripartite motif 5 alpha (trim5 alpha) a retrovirus restriction factor and association with HIV pathogenesis | Indian J Med Microbiol. 2019 Oct-Dec;37(4):574-583 | 3.42e-167 | 59 | 59 | Uncertain | Plasma | Direct PCR | Miscellaneous |
| Ramos (2003) | New HIV Type 1 CRF01_AE/B Recombinants Displaying Unique Distribution of Breakpoints from Incident Infections among Injecting Drug Users in Thailand | AIDS Res. Hum. Retroviruses 19 (8), 667-674 (2003) | 3.74e-152 | 4 | |||||
| Rashid (2023) | Genomic Characterization of a Novel HIV-1 DG intersubtype recombinant strain in Karachi, Pakistan | Unpublished | 1.2e-142 | 4 | |||||
| Rashid (2023) | Characterization of HIV-1 unique recombinant forms identified among children in Larkana, Pakistan | Unpublished | 1.65e-144 | 7 | |||||
| Rassler (2015) | Reconstruction of Residual HIV-1 from Plasma Viral RNA of a Patient on Suppressive Antiretroviral Therapy Identifies a Novel Mutation in the Viral 5'-Major Splice Donor Motif: Implication for Residual HIV-1 Persistence in vivo | Unpublished | 7.47e-152 | 8 | Unpublished | ||||
| Raymond (2013) | Direct Submission | Submitted (16-MAY-2013) Centre de Recherche en Inf | 7.48e-100 | 1 | Unpublished | ||||
| Recordon-Pinson (2018) | A new HIV-1 circulating recombinant form (CRF98_cpx) between CRF06_cpx and subtype B identified in Southwestern France | AIDS Res. Hum. Retroviruses (2018) In press | 1.33e-145 | 2 | |||||
| Reddy (2024) | Direct Submission | Submitted (14-DEC-2023) Basic and Translational Sc | 1.22e-159 | 342 | |||||
| Reinis (2016) | Genomic analysis of HIV type 1 strains derived from a mother and child pair of long-term nonprogressors | AIDS Res. Hum. Retroviruses 23 (2), 309-315 (2007) | 1.02e-154 | 4 | |||||
| Reis (2017) | Characterization of HIV-1 CRF90_BF1 and putative novel CRFs_BF1 in Central West, North and Northeast Brazilian regions | PLoS ONE 12 (6), E0178578 (2017) | 2.39e-157 | 11 | |||||
| Reis (2019) | Identification of New HIV-1 Circulating Recombinant Forms CRF81_cpx and CRF99_BF1 in Central Western Brazil and of Unique BF1 Recombinant Forms | Front Microbiol 10 (2019) In press | 3.08e-149 | 7 | Unpublished | ||||
| Reitz (1995) | Viral variability and serum antibody response in a laboratory worker infected with HIV type 1 (HTLV type IIIB) | AIDS Res. Hum. Retroviruses 10 (9), 1143-1155 (199 | 9.35e-156 | 1 | |||||
| Ren (2017) | HIV-1 epidemiological survey reveals the CRF07_BC and CRF08_BC subtypes are the main epidemic subtypes in Zhaotong City, different from other parts of Yunnan Province | J Gen Virol. 2017 Dec;98(12):3093-3100 | 2.41e-164 | 88 | 88 | ART | Plasma | Direct PCR | Molecular epidemiology |
| Rey-Cuille (1995) | HIV-2 EHO isolate has a divergent envelope gene and induces single cell killing by apoptosis | Virology 202 (1), 471-476 (1994) | 2.46e-103 | 1 | |||||
| Rhodehouse (2025) | Dynamics of Natural and Pharmacologic Control of an SIV Variant with an Envelope Trafficking Defect | Unpublished | 1.57e-99 | 151 | |||||
| Ritchie (2014) | Recombination-mediated escape from primary CD8+ T cells in acute HIV-1 infection | Retrovirology 11 (1), 69 (2014) | 1.39e-152 | 100 | 1 | Naive | Plasma | SGS | Acute infection |
| Riva (2016) | Identification of a possible ancestor of the subtype A1 HIV Type 1 variant circulating in the former Soviet Union | AIDS Res. Hum. Retroviruses 24 (10), 1319-1325 (20 | 7.44e-144 | 1 | |||||
| Roberts (2016) | Structured observations reveal slow HIV-1 CTL escape | PLoS Genet. 11 (2), E1004914 (2015) | 2.93e-172 | 299 | 125 | Mixed | Plasma | Direct PCR | HLA |
| Rodenburg (2016) | Near full-length clones and reference sequences for subtype C isolates of HIV type 1 from three different continents | AIDS Res. Hum. Retroviruses 17 (2), 161-168 (2001) | 9.02e-148 | 12 | |||||
| Rodgers (2017) | Sensitive next generation sequencing method reveals deep genetic diversity of HIV-1 in the Democratic Republic of the Congo | J. Virol. (2017) In press | 1.6e-149 | 28 | 28 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Rodgers (2017) | Identification of rare HIV-1 Group N, HBV AE, and HTLV-3 strains in rural South Cameroon | Virology 504, 141-151 (2017) | 5.05e-131 | 1 | |||||
| Rodrigues (2016) | Young pregnant women living with HIV/AIDS in Criciuma, Southern Brazil, are infected almost exclusively with HIV type 1 clade C | AIDS Res. Hum. Retroviruses 26 (3), 351-357 (2010) | 2.82e-165 | 8 | |||||
| Rodriguez (2016) | Construction and characterization of an infectious molecular clone of HIV-1 subtype A of Indian origin | Virology 345 (2), 328-336 (2006) | 5.68e-144 | 1 | |||||
| Rolland (2017) | Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2 | Nature 490 (7420), 417-420 (2012) | 8.38e-155 | 1018 | 110 | Naive | Plasma | SGS | Molecular epidemiology |
| Rolland (2017) | Genetic impact of vaccination on breakthrough HIV-1 sequences from the STEP trial | Nat. Med. 17 (3), 366-371 (2011) | 9.24e-158 | 442 | 68 | Naive | Plasma | SGS | Molecular epidemiology |
| Rolland (2020) | Molecular dating and viral load growth rates suggested that the eclipse phase lasted about a week in HIV-1 infected adults in East Africa and Thailand | PLoS Pathog. 16 (2), e1008179 (2020) | 1.93e-154 | 968 | 39 | Naive | Plasma | SGS | Acute infection |
| Roques (2005) | Phylogenetic characteristics of three new HIV-1 N strains and implications for the origin of group N | AIDS 18 (10), 1371-1381 (2004) | 1.85e-136 | 1 | |||||
| Rosas-Umbert (2018) | Mechanisms of abrupt loss of virus control in a cohort of previous HIV controllers | J Vaccines Immun (2019) In press | 4.23e-170 | 23 | Unpublished | ||||
| Rossenkhan (2025) | Bayesian estimation of HIV acquisition dates for prevention trials | mBio (2025) | 2.75e-160 | 8906 | |||||
| Rousseau (2016) | Large-scale amplification, cloning and sequencing of near full-length HIV-1 subtype C genomes | J. Virol. Methods 136 (1-2), 118-125 (2006) | 7.44e-151 | 246 | 244 | Naive | Plasma; PBMC | Molecular clones | Molecular epidemiology |
| Rousseau (2016) | HLA Class-I Driven Evolution of Human Immunodeficiency Virus Type 1 Subtype C Proteome: Immune Escape and Viral Load | J Virol. 2008 Jul;82(13):6434-46 | 1.01e-162 | 241 | 244 | Naive | Plasma | Molecular clones | HLA |
| Roux-Cil Ferreira (2024) | Temporary increase in circulating replication-competent latent HIV-infected resting CD4+ T cells after switch to an integrase inhibitor based antiretroviral regimen | EBioMedicine (2024) In press | 4.57e-150 | 18 | |||||
| Roye (2016) | Genotypic Characterization of HIV Type 1 in Jamaica | AIDS Res. Hum. Retroviruses 27 (1), 91-95 (2011) | 3.59e-153 | 7 | |||||
| Ruchansky (2016) | Identification of a new HIV Type 1 circulating recombinant form (CRF38_BF1) in Uruguay | AIDS Res. Hum. Retroviruses 25 (3), 351-356 (2009) | 2.99e-147 | 4 | |||||
| Rud (2016) | Infectious molecular clones of SIVmac32H: Nef deletion controls ability to reisolate virus from rhesus macaques | (in) Brown,F., Chanock,R.M. and Ginsberg,H.S. (Eds | 9.12e-100 | 1 | |||||
| Rudicell (2016) | High prevalence of simian immunodeficiency virus infection in a community of savanna chimpanzees | J. Virol. 85 (19), 9918-9928 (2011) | 4.85e-121 | 2 | |||||
| Rutvisuttinunt (2012) | Two Unique Recombinant Forms Identified in Incident HIV Type 1 Infections in Thai Blood Donors | AIDS Res. Hum. Retroviruses 28 (12), 1703-1711 (20 | 5.95e-151 | 9 | |||||
| Rychert (2006) | HIV-1 Sequence Variation Occurs in CD4 Epitopes During Acute Infection | Unpublished | 1.81e-166 | 2 | Unpublished | ||||
| Rychert (2007) | HIV-1 Sequence Variation Occurs in CD4 Epitopes | Unpublished | 7.2e-168 | 12 | Unpublished | ||||
| Sa Filho (2016) | Analysis of full-length human immunodeficiency virus type 1 genome reveals a variable spectrum of subtypes B and f recombinants in Sao Paulo, Brazil | AIDS Res. Hum. Retroviruses 21 (2), 145-151 (2005) | 3.69e-154 | 6 | |||||
| Sa-Filho (2016) | Characterization of the full-length human immunodeficiency virus-1 genome from recently infected subjects in Brazil | AIDS Res. Hum. Retroviruses 23 (9), 1087-1094 (200 | 8.36e-154 | 12 | |||||
| Saad (2005) | HIV Type 1 Strains Common in Europe, Africa, and Asia Cocirculate in Yemen | AIDS Res. Hum. Retroviruses 21 (7), 644-648 (2005) | 2.73e-151 | 6 | |||||
| Saad (2016) | Molecular Epidemiology of HIV Type 1 in Ukraine: Birthplace of an Epidemic | AIDS Res. Hum. Retroviruses 22 (8), 709-714 (2006) | 4.72e-155 | 12 | |||||
| Saeng-aroon (2016) | Distribution of HIV-1 subtypes in female sex workes recently infected with HIV-1 in Thailand | AIDS Res Hum Retroviruses. 2016 Jul;32(7):694-701 | 3.37e-159 | 147 | 147 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Sahbandar (2016) | Current HIV type 1 molecular epidemiology profile and identification of unique recombinant forms in Jakarta, Indonesia | AIDS Res. Hum. Retroviruses 25 (7), 637-646 (2009) | 1.77e-158 | 3 | |||||
| Sahbandar (2016) | The Indonesian Variants of CRF33_01B: Near-Full Length Sequence Analysis | AIDS Res. Hum. Retroviruses 27 (1), 97-102 (2011) | 1.5e-144 | 2 | |||||
| Sahu (2016) | Recovery of replication-competent residual HIV-1 from plasma of a patient receiving prolonged, suppressive highly active antiretroviral therapy | J. Virol. 84 (16), 8348-8352 (2010) | 3.91e-153 | 5 | |||||
| Saina (2015) | Comparison of HIV-1 nef and gag Variations and Host HLA Characteristics as Determinants of Disease Progression among HIV-1 Vertically Infected Kenyan Children | PLoS ONE 10 (8), E0137140 (2015) | 1.57e-164 | 50 | 50 | Naive | Plasma | Direct PCR | HLA |
| Sakamoto (2016) | Characterization of drug-resistance mutation profile kinetics in HIV-1 with infectious clones | Unpublished | 3.59e-155 | 145 | Unpublished | ||||
| Saladini (2012) | Near Full-Length Sequence Analysis of HIV Type 1 BF Recombinants from Italy | AIDS Res. Hum. Retroviruses 28 (3), 299-303 (2012) | 8.4e-152 | 14 | |||||
| Salazar-Gonzalez (2016) | Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection | J. Exp. Med. 206 (6), 1273-1289 (2009) | 2.93e-157 | 205 | 12 | Naive | Plasma; PBMC | SGS | Acute infection |
| Salazar-Gonzalez (2016) | Full-length Genomes of Transmitted/Founder Viruses Reveal Biological Properties and Precise Evolutionary Pathways of HIV-1 in Acute and Early Infection | Unpublished | 1.37e-155 | 8 | Unpublished | ||||
| Salazar-Gonzalez (2016) | Use of Dried Blood Spots to Elucidate Full-Length Transmitted/Founder HIV-1 Genomes | Pathog Immun 1 (1), 129-153 (2016) | 2.8e-157 | 35 | 2 | Naive | Plasma; Blood | SGS; NGS | Acute infection |
| Salgado (2012) | Prolonged control of replication-competent dual tropic human immunodeficiency virus-1 following cessation of highly active antiretroviral therapy | Retrovirology 8 (1), 97 (2011) | 7.07e-150 | 2 | |||||
| Salgado (2014) | Evolution of an Attenuated HIV-1 Isolate in an Elite Suppressor | AIDS Res. Hum. Retroviruses 30 (3), 284-288 (2014) | 4.21e-155 | 1 | |||||
| Salgado (2014) | HLA-B*57 Elite Suppressor and Chronic Progressor HIV-1 Isolates Replicate Vigorously and Cause CD4+ T Cell Depletion in Humanized BLT Mice | J. Virol. 88 (6), 3340-3352 (2014) | 3.93e-170 | 55 | 24 | Naive | PBMC | Uncertain | Reservoir |
| Salminen (1995) | Recovery of virtually full-length HIV-1 provirus of diverse subtypes from primary virus cultures using the polymerase chain reaction | Virology 213 (1), 80-86 (1995) | 1.33e-153 | 3 | |||||
| Salminen (1997) | Evolution and probable transmission of intersubtype recombinant human immunodeficiency virus type 1 in a Zambian couple | J. Virol. 71 (4), 2647-2655 (1997) | 3.11e-160 | 4 | |||||
| Salminen (1998) | Rapid and simple characterization of in vivo HIV-1 sequences using solid-phase direct sequencing | AIDS Res. Hum. Retroviruses 8 (9), 1733-1742 (1992 | 8.02e-145 | 2 | |||||
| Salminen (2000) | Construction and biological characterization of infectious molecular clones of HIV-1 subtypes B and E (CRF01_AE) generated by the polymerase chain reaction | Virology 278 (1), 103-110 (2000) | 5.03e-152 | 4 | |||||
| Salminen (2016) | Full-length sequence of an ethiopian human immunodeficiency virus type 1 (HIV-1) isolate of genetic subtype C | AIDS Res. Hum. Retroviruses 12 (14), 1329-1339 (19 | 4.32e-144 | 1 | |||||
| Samer (2022) | Blockade of TGF-beta signaling reactivates HIV-1/SIV reservoirs and immune responses in vivo | JCI Insight (2022) In press | 1.73e-107 | 74 | |||||
| Sanabani (2016) | Near full-length genome analysis of low prevalent human immunodeficiency virus type 1 subclade F1 in Sao Paulo, Brazil | Virol. J. 6, 78 (2009) | 7.57e-148 | 5 | |||||
| Sanabani (2016) | Characterization and frequency of a newly identified HIV-1 BF1 intersubtype circulating recombinant form in Sao Paulo, Brazil | Virol. J. 7, 74 (2010) | 8.11e-147 | 6 | |||||
| Sanabani (2016) | Analysis of the near full length genomes of HIV-1 subtypes B, F and BF recombinant from a cohort of 14 patients in Sao Paulo, Brazil | Infect. Genet. Evol. 6 (5), 368-377 (2006) | 3.5e-153 | 14 | |||||
| Sanabani (2016) | Full-length genome analysis of human immunodeficiency virus type 1 subtype C in Brazil | AIDS Res. Hum. Retroviruses 22 (2), 171-176 (2006) | 4.67e-147 | 6 | |||||
| Sanabani (2017) | Characterization of Partial and Near Full-Length Genomes of HIV-1 Strains Sampled from Recently Infected Individuals in Sao Paulo, Brazil | PLoS ONE 6 (10), E25869 (2011) | 1.27e-154 | 50 | 50 | Naive | PBMC | Direct PCR | Molecular epidemiology |
| Sanabani (2025) | Characterization of partial and near full-length genomes of HIV-1 strains sampled from recently infected individuals in Sao Paulo, Brazil | PLoS One 6 (10), e25869 (2011) | 2.87e-152 | 3 | |||||
| Sanchez-Merino (2005) | HIV-1-specific CD8+ T cell responses and viral evolution in women and infants | J. Immunol. 175 (10), 6976-6986 (2005) | 7.28e-169 | 190 | 10 | Naive | Plasma? | Molecular clones | HLA |
| Sanchez-Merino (2016) | Genetic changes associated with distinct patterns of HIV type 1 persistence in chronically infected cell lines | AIDS Res. Hum. Retroviruses 23 (2), 251-260 (2007) | 2.48e-152 | 3 | |||||
| Sanchez (2004) | Molecular and epidemiological characterization of HIV-1 infected individuals from Medellin, Columbia | Unpublished | 1.26e-153 | 8 | Unpublished | ||||
| Sanders-Buell (2016) | A Nascent HIV Type 1 Epidemic among Injecting Drug Users in Kabul, Afghanistan Is Dominated by Complex AD Recombinant Strain, CRF35_AD | AIDS Res. Hum. Retroviruses 23 (6), 834-839 (2007) | 5.23e-144 | 4 | |||||
| Sanders-Buell (2016) | Distinct circulating recombinant HIV-1 strains among injecting drug users and sex workers in Afghanistan | AIDS Res. Hum. Retroviruses 26 (5), 605-608 (2010) | 1.29e-144 | 11 | |||||
| Sanders-Buell (2021) | Direct Submission | Submitted (05-JAN-2021) U.S. Military HIV Research | 1.27e-152 | 89 | Unpublished | ||||
| Sannier (2021) | Combined Single-Cell Transcriptional, Translational and Genomic Profiling Reveals HIV-1 Reservoir Diversity | Cell Rep. 2021 Aug 31;36(9):109643 | 2.77e-163 | 130 | 25 | Mixed | PBMC | SGS | Reservoir |
| Santhosh (2016) | Full-length genome characterization of an HIV type 2 isolate from India | AIDS Res. Hum. Retroviruses 24 (10), 1315-1317 (20 | 4.97e-104 | 1 | |||||
| Santiago (2016) | Amplification of a complete simian immunodeficiency virus genome from fecal RNA of a wild chimpanzee | J. Virol. 77 (3), 2233-2242 (2003) | 1.22e-121 | 1 | |||||
| Santiago (2016) | Simian immunodeficiency virus infection in free-ranging sooty mangabeys (Cercocebus atys atys) from the Tai Forest, Cote d'Ivoire: implications for the origin of epidemic human immunodeficiency virus type 2 | J. Virol. 79 (19), 12515-12527 (2005) | 2.24e-111 | 6 | |||||
| Santos (2016) | Characterization of a new circulating recombinant form comprising HIV-1 subtypes C and B in southern Brazil | AIDS 20 (16), 2011-2019 (2006) | 1.5e-146 | 1 | |||||
| Sarkar (2016) | HIV-1 recombinants among Manipur IDUs, India | Unpublished | 3.55e-145 | 1 | Unpublished | ||||
| Sasinovich (2016) | Direct Submission | Submitted (02-NOV-2015) Laboratory of HIV and Oppo | 1.2e-144 | 1 | Unpublished | ||||
| Sato (2006) | Augmentation of human immunodeficiency virus type 1 subtype E (CRF01_AE) multiple-drug resistance by insertion of a foreign 11-amino-acid fragment into the reverse transcriptase | J. Virol. 75 (12), 5604-5613 (2001) | 1.57e-144 | 1 | |||||
| Sato (2016) | Construction and characterization of multidrug-resistant HIV-1 subtype B infectious molecular clones derived from Japanese patients for reference | Unpublished | 8.56e-153 | 4 | Unpublished | ||||
| Sauermann (1996) | Molecular cloning and characterization of a German HIV-1 isolate | AIDS Res. Hum. Retroviruses 6 (6), 813-823 (1990) | 3.06e-154 | 1 | |||||
| Saurya (2005) | Molecular characterization of HIV-1 from HAART treated AIDS patients | Thesis (2002) University of Cambridge, Cambridge, | 6.44e-170 | 27 | 10 | ART | Plasma | Molecular clones | Miscellaneous |
| Scharf (2020) | Delayed expression of PD1 and TIGIT on HIV-1specific CD8 T-cells in untreated HLA-B*57:01 individuals followed from early infection | J. Virol. (2020) In press | 1.43e-170 | 695 | 12 | Naive | Plasma | SGS | HLA |
| Schmitz (2016) | Lv2, a novel postentry restriction, is mediated by both capsid and envelope | J. Virol. 78 (4), 2006-2016 (2004) | 7.37e-103 | 2 | |||||
| Schneidewind (2009) | Transmission and long-term stability of compensated CD8 escape mutations | J. Virol. 83 (8), 3993-3997 (2009) | 1.07e-169 | 49 | 45 | Uncertain | Uncertain | Uncertain | HLA |
| Scrimieri (2023) | Transcriptionally-active 'defective' HIV-1 provirus and its implication in immunological non-response to antiretroviral therapy | Unpublished | 3.48e-168 | 551 | |||||
| Sengupta (2010) | Characterization of HIV-1 full length gag gene from IDU of Manipur, India | Unpublished | 1.8e-155 | 2 | Unpublished | ||||
| Sengupta (2010) | Characterization of HIV-1 full length gag gene from FSW of Kolkata, India | Unpublished | 4.34e-150 | 1 | Unpublished | ||||
| Senjobe (2025) | Markedly reduced mutational frequencies of networked epitopes promote CD8+ T cell cross-recognition and clearance of the latent HIV-1 reservoir | Unpublished | 1.61e-153 | 27 | |||||
| Serwanga (2012) | Profile of T Cell Recognition of HIV Type 1 Consensus Group M Gag and Nef Peptides in a Clade A1- and D-Infected Ugandan Population | AIDS Res. Hum. Retroviruses 28 (4), 384-392 (2012) | 1.03e-166 | 46 | 50 | Naive | PBMC | Direct PCR | HLA |
| Shahid (2023) | The replication-competent HIV reservoir is a genetically restricted, younger subset of the overall pool of HIV proviruses persisting during therapy, which is highly genetically stable over time | Res Sq (2023) | 7.19e-169 | 475 | |||||
| Shao (2016) | Molecular epidemiology is becoming complex under the dynamic HIV prevalence: The perspective from Harbin, China | J. Med. Virol. (2015) In press | 3.8e-162 | 80 | 81 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Sharkey (2018) | HIV-1 escape from small molecule antagonism of Vif | Unpublished | 1.12e-154 | 1 | Unpublished | ||||
| Sharma (2014) | Molecular Diversity of HIV-1 among the HIV Infected People of North Eastern India | Unpublished | 3.71e-134 | 1 | Unpublished | ||||
| Sharma (2013) | The dynamics of sequence insertions in HIV Type 1 subtype C p6 in drug naive patients from India | Unpublished | 2.89e-161 | 16 | Unpublished | ||||
| Sharma (2015) | Immune Escape in the chronic phase of Subtype C HIV-1 infection in the Indian Clinical cohort | BMC Infectious Diseases volume 12, Article number: P25 (2012) | 1.31e-163 | 160 | 10 | Naive | Plasma | Molecular clones | Miscellaneous |
| Sharma (2018) | Molecular charecterisation of HIV-1 in infants born to HIV-1 positive mothers | Virus Genes. 2018 Oct;54(5):647-661. | 1.58e-166 | 78 | 82 | Uncertain | PBMC | Direct PCR | Molecular epidemiology |
| Shcherbakova (2014) | Short Communication: Molecular Epidemiology, Phylogeny, and Phylodynamics of CRF63_02A1, a Recently Originated HIV-1 Circulating Recombinant Form Spreading in Siberia | AIDS Res. Hum. Retroviruses 30 (9), 912-919 (2014) | 2.96e-145 | 3 | |||||
| Shen (2024) | Sequence Note: Characterization of the near-full-length genome of two novel Unique Recombinant Genome among men who have sex with men in Hebei, China | Unpublished | 7.34e-144 | 2 | |||||
| Sherefa (2016) | Full-length sequence of human immunodeficiency virus type 1 subtype A, recombined with subtype C in the env V3 domain | AIDS Res. Hum. Retroviruses 14 (3), 289-292 (1998) | 9.61e-147 | 1 | |||||
| Shi (2016) | Construction of an infectious HIV type 1 molecular clone from an African patient with a subtype D/C Recombinant Virus | AIDS Res. Hum. Retroviruses 20 (9), 1015-1018 (200 | 4.14e-149 | 1 | |||||
| Shi (2023) | Direct Submission | Submitted (10-JAN-2023) Clinical Laboratory, The P | 1.59e-141 | 1 | |||||
| Shi (2024) | Crf01_ae/c | Unpublished | 3.72e-143 | 4 | |||||
| Shi (2024) | Bdl123bdd027 | Unpublished | 1.09e-144 | 2 | |||||
| Shi (2024) | Direct Submission | Submitted (28-OCT-2024) Department of Clinical Lab | 6.84e-144 | 3 | |||||
| Shi (2025) | Crf01_ae/crf07_bc/b | Unpublished | 5.44e-150 | 2 | |||||
| Shi (2025) | Crf08_bc/b | Unpublished | 5.62e-144 | 1 | |||||
| Shi (2025) | Direct Submission | Submitted (27-MAY-2025) Department of Clinical Lab | 2.04e-143 | 1 | |||||
| Shi (2025) | Direct Submission | Submitted (29-AUG-2025) Department of Clinical Lab | 6.96e-128 | 1 | |||||
| Shibata (1999) | Isolation and characterization of a syncytium-inducing, macrophage/T-cell line-tropic human immunodeficiency virus type 1 isolate that readily infects chimpanzee cells in vitro and in vivo | J. Virol. 69 (7), 4453-4462 (1995) | 4.61e-154 | 1 | |||||
| Shibata (2016) | Construction and characterization of an infectious DNA clone and of mutants of simian immunodeficiency virus isolated from the African green monkey | J. Virol. 64 (1), 307-312 (1990) | 3.03e-105 | 1 | |||||
| Shiino (2002) | Evolutionary analysis of ultra-frequent defective G to A mutations observed in the provirus of HIV-1 infected patients under long-term anti-retroviral drug therapy | Unpublished | 3.93e-169 | 30 | Unpublished | ||||
| Sierra (2016) | Analysis of near full-length genome sequences of HIV-1 isolates of Romanian origin | Unpublished | 2.13e-148 | 3 | Unpublished | ||||
| Sierra (2016) | Identification of 3 phylogenetically related HIV-1 BG intersubtype circulating recombinant forms in Cuba | J. Acquir. Immune Defic. Syndr. 45 (2), 151-160 (2 | 1.09e-153 | 19 | |||||
| Sierra (2016) | The analysis of near full-length genome sequences of human immunodeficiency virus type 1 BF intersubtype recombinant viruses from Chile, Venezuela and Spain reveals their relationship to diverse lineages of recombinant viruses related to CRF12_BF | Infect. Genet. Evol. 5 (3), 209-217 (2005) | 3.6e-148 | 6 | |||||
| Sierra (2016) | Near full-length genome characterization of phylogenetically related HIV-1 BG intersubtype recombinant viruses and their parental subtype B and G strains from Cuba | Unpublished | 1.27e-143 | 1 | Unpublished | ||||
| Silva (2009) | HIV-1 genetic diversity in a group of IDU living in Portugal | Unpublished | 2.38e-123 | 1 | Unpublished | ||||
| Silver (2019) | A highly unusual V1 region of Env in an elite controller 1 of HIV infection | Unpublished | 1.83e-154 | 1 | Unpublished | ||||
| Simon (2005) | Identification of a new human immunodeficiency virus type 1 distinct from group M and group O | Nat. Med. 4 (9), 1032-1037 (1998) | 5.84e-130 | 1 | |||||
| Simon (2016) | Complementation of vif-defective human immunodeficiency virus type 1 by primate, but not nonprimate, lentivirus vif genes | J. Virol. 69 (7), 4166-4172 (1995) | 2.02e-154 | 1 | |||||
| Simon (2003) | Infectivity and replication capacity of drug-resistant human immunodeficiency virus type 1 variants isolated during primary infection | J. Virol. 77 (14), 7736-7745 (2003) | 7.45e-169 | 18 | |||||
| Simon (2016) | Natural variation in Vif: differential impact on APOBEC3G/3F and a potential role in HIV-1 diversification | PLoS Pathog. 1 (1), E6 (2005) | 8.56e-163 | 13 | |||||
| Simonetti (2014) | Identification of a new HIV-1 BC circulating recombinant form (CRF60_BC) in Italian young men having sex with men | Infect. Genet. Evol. 23, 176-181 (2014) | 1.6e-144 | 3 | |||||
| Simonetti (2016) | Clonally expanded CD4+ T cells can produce infectious HIV-1 in vivo | Proc. Natl. Acad. Sci. U.S.A. 113 (7), 1883-1888 ( | 1.03e-153 | 1 | |||||
| Simonetti (2021) | Antigen-driven clonal selection shapes the persistence of HIV-1 infected CD4+ T cells in vivo | J Clin Invest (2021) In press | 3.95e-163 | 31 | 10 | ART | PBMC | SGS | Reservoir |
| Singh (2023) | Long-term persistence of transcriptionally active 'defective' HIV-1 proviruses: implications for persistent immune activation during antiretroviral therapy | AIDS 37 (14), 2119-2130 (2023) | 9.68e-171 | 429 | |||||
| Singh (2024) | HIV1 near complete genomes from India | Unpublished | 5.39e-144 | 3 | |||||
| Smith (2016) | Effective Cytotoxic T Lymphocyte Targeting of Persistent HIV-1 during Antiretroviral Therapy Requires Priming of Naive CD8+ T Cells | MBio 7 (3), e00473-16 (2016) | 2.78e-170 | 39 | 3 | ART | Cultured PBMC | SGS | Reservoir |
| Smith (2002) | Early SIVsmmPGm infection in brain and lymphoid tissues of pigtailed macaques | Unpublished | 8.18e-113 | 2 | Unpublished | ||||
| Smolen (2016) | HIV type 1 genetic diversity in Silesia, Poland: a retrospective analysis | AIDS Res. Hum. Retroviruses 26 (7), 767-776 (2010) | 2.02e-167 | 78 | 101 | Mixed | PBMC | Direct PCR | Molecular epidemiology |
| Soares (2016) | A full-length and replication-competent proviral clone of SIVAGM from tantalus monkeys | Virology 228 (2), 394-399 (1997) | 5.54e-98 | 1 | |||||
| Song (2013) | Analysis of recombinant viral genomes in individuals infected with multiple transmitted/founder HIV-1 strains | Unpublished | 6.52e-151 | 160 | Unpublished | ||||
| Song (2018) | Tracking HIV-1 recombination to resolve its contribution to HIV-1 evolution in natural infection | Nat Commun (2018) In press | 2.22e-162 | 722 | 10 | Naive | Plasma | SGS | Acute infection |
| Song (2024) | Transmission of highly virulent CXCR4 tropic HIV-1 through the mucosal route in an individual with a wild-type CCR5 genotype | Res Sq (2023) | 4.48e-148 | 5 | |||||
| Song (2020) | Near Full-Length Genomic Characterization of a Novel HIV-1 Circulating Recombinant Form (CRF107_01B) Identified among Men Who Have Sex with Men in Heilongjiang province of China | AIDS Res. Hum. Retroviruses (2020) In press | 1.45e-152 | 4 | |||||
| Song (2016) | Near-full-length genome identification of a novel HIV-1 circulating recombinant form, CRF01_AE/B'/C (CRF78_cpx) in Yunnan, China | AIDS Res. Hum. Retroviruses (2016) In press | 1.03e-144 | 3 | |||||
| Souquiere (2005) | Characterization of Four Newly Derived HIV-1 Group Nand Two SIVcpz Strains from Cameroon | Unpublished | 5.76e-139 | 1 | Unpublished | ||||
| Souquiere (2012) | New strain of simian immunodeficiency virus identified in wild-born chimpanzees from central Africa | PLoS ONE 7 (9), E44298 (2012) | 2.78e-136 | 1 | |||||
| Souquiere (2016) | Wild Mandrillus sphinx are carriers of two types of lentivirus | J. Virol. 75 (15), 7086-7096 (2001) | 9.05e-96 | 1 | |||||
| Spire (1993) | Nucleotide sequence of HIV1-NDK: a highly cytopathic strain of the human immunodeficiency virus | Gene 81 (2), 275-284 (1989) | 4.25e-151 | 1 | |||||
| Spivak (2016) | A case of seronegative HIV-1 infection | J. Infect. Dis. 201 (3), 341-345 (2010) | 5.04e-167 | 1 | |||||
| Starcich (2016) | Identification and characterization of conserved and variable regions in the envelope gene of HTLV-III/LAV, the retrovirus of AIDS | Cell 45 (5), 637-648 (1986) | 1.42e-160 | 2 | |||||
| Steain (2016) | HIV-1 sequence diversity and dual infections in Kenya | AIDS Res Hum Retroviruses. 2005 Oct;21(10):882-5 | 5.29e-166 | 35 | 15 | Naive | PBMC | Direct PCR | Molecular epidemiology |
| Stekler (2018) | Transmission of HIV-1 drug resistance mutations within partner-pairs: A cross-sectional study of a primary HIV infection cohort | PLoS Med. 15 (3), e1002537 (2018) | 2.2e-154 | 22 | |||||
| Streeck (2016) | Immune-driven recombination and loss of control after HIV superinfection | J. Exp. Med. 205 (8), 1789-1796 (2008) | 3.38e-154 | 9 | |||||
| Struck (2016) | A new HIV-1 B/F1 unique recombinant form (URF) outbreak in Luxembourg: near full-length genome characterization and phylogenetic analysis | Unpublished | 2.14e-148 | 21 | Unpublished | ||||
| Struyve (2025) | Longitudinal analysis of integration site features and composition of the inducible HIV-1 reservoir in early-treated people | Unpublished | 2.3e-151 | 46 | |||||
| Su (2016) | HIV-1 subtype B' dictates the AIDS epidemic among paid blood donors in the Henan and Hubei provinces of China | AIDS 17 (17), 2515-2520 (2003) | 3.31e-156 | 3 | |||||
| Su (2016) | Identification of a Novel HIV-1 Circulating Recombinant Form (CRF85_BC) in Sichuan, China | AIDS Res. Hum. Retroviruses (2016) In press | 1.3e-147 | 10 | |||||
| Subbarao (2016) | Full-length HIV-1 CRF01_AE sequence | Unpublished | 4.53e-146 | 1 | Unpublished | ||||
| Sugimoto (2016) | Protection of macaques with diverse MHC genotypes against a heterologous SIV by vaccination with a deglycosylated live-attenuated SIV | PLoS ONE 5 (7), E11678 (2010) | 3.31e-111 | 5 | |||||
| Sun (2018) | Near Full-Length Genome Sequence of a Novel HIV-1 Recombinant Form (CRF01_AE/07_BC) Detected Among Men Who Have Sex with Men in Zhejiang, China | Unpublished | 2.74e-144 | 1 | Unpublished | ||||
| Sun (2019) | Direct Submission | Submitted (11-JAN-2019) School of Medicine, Zhejia | 4.32e-103 | 1 | Unpublished | ||||
| Sun (2019) | Multiple HIV-1 subtypes were found circulating in Shijingshan District of Beijing, China | AIDS Res. Hum. Retroviruses (2019) In press | 4.32e-165 | 114 | 114 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Sun (2023) | Persistence of intact HIV-1 proviruses in the brain during antiretroviral therapy | bioRxiv (2023) | 9.19e-168 | 359 | |||||
| Sun (2016) | Direct Submission | Submitted (18-JUL-2016) AIDS Prevention and Contro | 4.9e-149 | 76 | Unpublished | ||||
| Sutherland (2015) | Gag-Protease Sequence Evolution Following Protease Inhibitor Monotherapy Treatment Failure in HIV-1 Viruses Circulating in East Africa | AIDS Res. Hum. Retroviruses 31 (10), 1032-1037 (20 | 2.35e-164 | 46 | 23 | ART | Plasma | Direct PCR | Miscellaneous |
| Swanson (2016) | Full-length sequence analysis of HIV-1 isolate CM237: a CRF01_AE/B intersubtype recombinant from Thailand | AIDS Res. Hum. Retroviruses 19 (8), 707-712 (2003) | 1.55e-152 | 1 | |||||
| Tagnouokam Ngoupo (2018) | Characterization of a new HIV-1 group N isolate originating from a Cameroonian patient | AIDS Res. Hum. Retroviruses (2018) In press | 8.3e-137 | 1 | |||||
| Takahoko (2001) | Infectious DNA clone of HIV type 1 A/G recombinant (CRF02_AG) replicable in peripheral blood mononuclear cells | AIDS Res. Hum. Retroviruses 17 (11), 1083-1087 (20 | 1.71e-145 | 1 | |||||
| Takebe (2003) | High prevalence of diverse forms of HIV-1 intersubtype recombinants in Central Myanmar: geographical hot spot of extensive recombination | Unpublished | 3e-152 | 9 | Unpublished | ||||
| Takehisa (2009) | Origin and biology of simian immunodeficiency virus in wild-living western gorillas | J. Virol. 83 (4), 1635-1648 (2009) | 1.73e-139 | 6 | |||||
| Takehisa (2012) | Complete SIVcpz genome sequence from Pan troglodytes schweinfurthii feces from Gombe National Park, Tanzania | Unpublished | 1.12e-121 | 1 | Unpublished | ||||
| Takehisa (2013) | Complete SIVcpz genome from Pan troglodytes troglodytes feces from Cameroon | Unpublished | 1.9e-141 | 1 | Unpublished | ||||
| Takehisa (2016) | Generation of infectious molecular clones of simian immunodeficiency virus from fecal consensus sequences of wild chimpanzees | J. Virol. 81 (14), 7463-7475 (2007) | 1.22e-121 | 5 | |||||
| Takehisa (2016) | Natural infection of wild-born mandrills (Mandrillus sphinx) with two different types of simian immunodeficiency virus | AIDS Res. Hum. Retroviruses 17 (12), 1143-1154 (20 | 3.21e-94 | 1 | |||||
| Takekawa (2016) | Construction and characterization of HIV-1 subtype G infectious molecular clones derived from a Ghananian patient | Unpublished | 6.62e-143 | 2 | Unpublished | ||||
| Takekawa (2016) | Molecular characterization of infectious molecular clones derived from naive subtype B HIV-1 in Japan | Unpublished | 4.84e-153 | 2 | Unpublished | ||||
| Takekawa (2016) | A comprehensive panel of infectious molecular clones derived from HIV isolates of BBI subtype infectivity panel | Unpublished | 1.84e-155 | 40 | Unpublished | ||||
| Takekawa (2016) | Molecular characterization of infectious molecular clones derived from multidrug-resistant HIV-1 subtype B in Japan | Unpublished | 1.08e-150 | 5 | Unpublished | ||||
| Takekawa (2016) | A new generation of recombinants between CRF02_AG and subtype A detected in Ghana : analysis by infectious molecular clones | Unpublished | 1.43e-151 | 5 | Unpublished | ||||
| Takeuchi (2006) | Isolation and characterization of an infectious HIV type 1 molecular clone from a patient with primary infection | AIDS Res. Hum. Retroviruses 18 (15), 1127-1133 (20 | 1.08e-154 | 1 | |||||
| Tan (2016) | Construction and characterization of an infectious molecular clone of HIV-1 subtype B' isolated from Hubei Province, China | Unpublished | 2.4e-145 | 1 | Unpublished | ||||
| Tang (2024) | Identification of two HIV-1 CRF01_AE/B recombinant forms and a CRF01_AE/B/C recombinant forms in Hebei Province, China | Unpublished | 8.73e-146 | 3 | |||||
| Tang (2023) | Brain microglia are a persistent HIV reservoir despite durable antiretroviral therapy | Unpublished | 3.42e-149 | 2 | |||||
| Tang (2016) | Viral attenuation due to HLA-B57 escape mutations enables control of HIV following vertical transmission despite depletion of CD8 T cell targets | J Virol. 2009 Sep;83(17):8616-27. | 1.53e-171 | 225 | 26 | ART | Plasma | Direct PCR | HLA |
| Tatsumi (2011) | Construction and characterization of HIV-1 subtype C infectious molecular clones derived from Zambian isolates | Unpublished | 1.21e-147 | 16 | Unpublished | ||||
| Tatsumi (2016) | Infectious DNA clones of subtype G and CRF02_AG HIV-1 derived from Ghananian isolates | Unpublished | 3.82e-146 | 6 | Unpublished | ||||
| Tatsumi (2016) | Construction and characterization of HIV-1 laboratory strain Ba-L infectious molecular clones | Unpublished | 1.43e-149 | 1 | Unpublished | ||||
| Tatsumi (2016) | Infectious DNA clones of HIV-1 subtype A | Unpublished | 1.09e-141 | 4 | Unpublished | ||||
| Tatsumi (2016) | Infectious DNA clones of subtype B HIV-1 | Unpublished | 1.43e-149 | 1 | Unpublished | ||||
| Tebas (2021) | CCR5-Edited CD4 T Cells Augment HIV-Specific Immunity to Enable Post Rebound Control of HIV Replication | J Clin Invest. 2021 Apr 1;131(7):e144486. | 1.19e-167 | 35 | 3 | ART | Plasma | SGS | Reservoir |
| Tebit (2016) | Construction and characterization of an HIV-1 group O infectious molecular clone and analysis of vpr- and nef-negative derivatives | Virology 326 (2), 329-339 (2004) | 2.94e-124 | 2 | |||||
| Tebit (2016) | Genotypic and phenotypic analysis of HIV type 1 primary isolates from western Cameroon | AIDS Res. Hum. Retroviruses 18 (1), 39-48 (2002) | 1.68e-147 | 1 | |||||
| Tebit (2016) | Construction and characterisation of a full-length infectious molecular clone from a fast replicating, X4-tropic HIV-1 CRF02.AG primary isolate | Virology 313 (2), 645-652 (2003) | 3.89e-143 | 1 | |||||
| Techakriengkrai (2016) | Poor HIV control in HLA-B*27 and -B*57/58 non-controllers is resulted from limited number of polyfunctional gag p24-specific-CD8+ T cells | AIDS. 2013 Jan 2;27(1):17-27 | 2.01e-173 | 65 | 45 | Naive | Plasma | Direct PCR | HLA |
| Tee (2016) | Isolation and characterization of a replication-competent molecular clone of an HIV-1 circulating recombinant form (CRF33_01B) | PLoS ONE 4 (8), E6666 (2009) | 1.2e-142 | 1 | |||||
| Tee (2016) | Estimating the date of origin of an HIV-1 circulating recombinant form | Virology 387 (1), 229-234 (2009) | 3.28e-154 | 9 | |||||
| Tee (2016) | Identification of a novel circulating recombinant form (CRF33_01B) disseminating widely among various risk populations in Kuala Lumpur, Malaysia | J. Acquir. Immune Defic. Syndr. 43 (5), 523-529 (2 | 2.21e-145 | 8 | |||||
| Ternette (2014) | The First Glance at the HLA Class I-Associated Immunopeptidome from HIV-1-Infected Cells | Unpublished | 1.99e-155 | 1 | Unpublished | ||||
| Thans (2019) | Primary HIV-1 strains use Nef to downmodulate HLA-E surface expression | J. Virol. (2019) In press | 3e-147 | 2 | |||||
| Theodore (1993) | Unpublished | 2.02e-150 | 1 | Unpublished | |||||
| Theodore (2016) | Construction and characterization of a stable full-length macrophage-tropic HIV type 1 molecular clone that directs the production of high titers of progeny virions | AIDS Res. Hum. Retroviruses 12 (3), 191-194 (1996) | 3.95e-155 | 1 | |||||
| Thitithanyanont (2016) | Persistent seronegativity in an asymptomatic 27-month-old child with vertical HIV-1-infection | Unpublished | 4.55e-145 | 2 | Unpublished | ||||
| Thompson (2016) | DNA/MVA Vaccination of Drug-Treated HIV Patients; Elicitation of Immune Responses Without Control of Re-emergent Virus | Unpublished | 7.77e-169 | 95 | Unpublished | ||||
| Thomson (2016) | New insights into the origin of the HIV type 1 subtype A epidemic in former Soviet Union's countries derived from sequence analyses of preepidemically transmitted viruses | AIDS Res. Hum. Retroviruses 23 (12), 1599-1604 (20 | 2.43e-151 | 2 | |||||
| Thomson (2016) | Identification of a novel HIV-1 complex circulating recombinant form (CRF18_cpx) of Central African origin in Cuba | AIDS (2005) In press | 3.2e-144 | 2 | Unpublished | ||||
| Thomson (2016) | Direct Submission | Submitted (18-JAN-2005) Patogenia Viral, Instituto | 2.48e-143 | 1 | Unpublished | ||||
| Thomson (2016) | Diversity of mosaic structures and common ancestry of human immunodeficiency virus type 1 BF intersubtype recombinant viruses from Argentina revealed by analysis of near full-length genome sequences | J. Gen. Virol. 83 (Pt 1), 107-119 (2002) | 1.81e-147 | 8 | |||||
| Thomson (2016) | Analysis of near full-length genome sequences of HIV type 1 BF intersubtype recombinant viruses from Brazil reveals their independent origins and their lack of relationship to CRF12_BF | AIDS Res. Hum. Retroviruses 20 (10), 1126-1133 (20 | 2.07e-151 | 8 | |||||
| Thongcharoen (2007) | A phase I/II comparative vaccine trial of the safety and immunogenicity of a CRF01_AE (subtype E) candidate vaccines: ALVAC-HIV (vCP1521) prime with oligomeric gp160 (92TH023/LAI-DID) or bivalent gp120 (CM235/SF2) boost | Unpublished | 2.16e-170 | 1 | Unpublished | ||||
| Tongo Passo (2012) | Direct Submission | Submitted (25-JUN-2012) Medical Virology, Universi | 7.07e-154 | 1 | Unpublished | ||||
| Tongo Passo (2012) | Direct Submission | Submitted (23-JUN-2012) Medical Virology, Universi | 3.8e-164 | 48 | 48 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Tongo (2015) | Near full-length HIV type 1M genomic sequences from Cameroon: evidence of early diverging under-sampled lineages in the country | Evol Med Public Health (2015) In press | 3.46e-146 | 9 | |||||
| Toni (2005) | Presence of CRF09_cpx and complex CRF02_AG/CRF09_cpx recombinant HIV type 1 strains in Cote d'Ivoire, West Africa | AIDS Res. Hum. Retroviruses 21 (7), 667-672 (2005) | 3.47e-146 | 6 | |||||
| Topcu (2022) | First Description of a New HIV-1 Recombinant Form CRF91_cpx Among Men Who Have Sex with Men | Unpublished | 1.74e-147 | 11 | |||||
| Topcu (2022) | Comparative HIV-1 Phylogenies Characterized by PR/RT, Pol and Near-Full-Length Genome Sequences | Viruses 14 (10), 2286 (2022) | 1.12e-149 | 33 | |||||
| Topcu (2022) | Characterization of Four Novel HIV-1 Circulating Recombinant Forms, CRF129_56G, CRF130_A1B, CRF131_A1B, and CRF138_cpx | Unpublished | 2.12e-144 | 8 | |||||
| Totmenin (2023) | Identification of a Novel HIV-1 Circulating Recombinant Form CRF157_A6C in Primorsky Krai, Russia | Unpublished | 2.01e-146 | 16 | |||||
| Toure-Kane (2006) | Full-length genome sequencing of HIV type 1 group O viruses isolated from a heterosexual transmission cluster in Senegal | AIDS Res. Hum. Retroviruses 17 (12), 1211-1216 (20 | 4.64e-127 | 3 | |||||
| Toure-Kane (2016) | Identification of all HIV type 1 group M subtypes in Senegal, a country with low and stable seroprevalence | AIDS Res. Hum. Retroviruses 16 (6), 603-609 (2000) | 3.74e-167 | 78 | 77 | Naive | PBMC | Direct PCR | Molecular epidemiology |
| Tovanabutra (2001) | First CRF01_AE/B recombinant of HIV-1 is found in Thailand | AIDS 15 (8), 1063-1065 (2001) | 1.57e-151 | 1 | |||||
| Tovanabutra (2004) | The changing molecular epidemiology of HIV type 1 among northern Thai drug users, 1999 to 2002 | AIDS Res. Hum. Retroviruses 20 (5), 465-475 (2004) | 2.24e-150 | 38 | 38 | Naive | PBMC | Molecular clones | Molecular epidemiology |
| Tovanabutra (2005) | Characterization of Complete HIV Type 1 Genomes from Non-B Subtype Infections in U.S. Military Personnel | AIDS Res. Hum. Retroviruses 21 (5), 424-429 (2005) | 2.29e-151 | 13 | |||||
| Tovanabutra (2009) | HIV-1 subtype C gag gene from an incident infection identified in Tanzania | Unpublished | 3.02e-160 | 1 | Unpublished | ||||
| Tovanabutra (2014) | Full Genome Characterization of HIV-1 subtype B from Thailand | Unpublished | 2.26e-151 | 1 | Unpublished | ||||
| Tovanabutra (2016) | Identification of CRF34_01B, a Second Circulating Recombinant Form Unrelated to and More Complex Than CRF15_01B, among Injecting Drug Users in Northern Thailand | AIDS Res. Hum. Retroviruses 23 (6), 829-833 (2007) | 2.34e-145 | 3 | |||||
| Tovanabutra (2016) | Evaluation of HIV type 1 strains in men having sex with men and in female sex workers in Mombasa, Kenya | AIDS Res. Hum. Retroviruses 26 (2), 123-131 (2010) | 1.7e-146 | 22 | |||||
| Tovanabutra (2016) | A new circulating recombinant form, CRF15_01B, reinforces the linkage between IDU and heterosexual epidemics in Thailand | AIDS Res. Hum. Retroviruses 19 (7), 561-567 (2003) | 4.89e-144 | 3 | |||||
| Tovanabutra (2017) | Direct Submission | Submitted (08-AUG-2017) Laboratory of Molecular Vi | 1.8e-143 | 1 | Unpublished | ||||
| Tovanabutra (2020) | Direct Submission | Submitted (07-DEC-2018) Laboratory of Molecular Vi | 3.86e-149 | 262 | 18 | Naive | Plasma; CSF | NGS | Acute infection |
| Tran (2015) | A strong association of HLA-associated Pol and Gag mutations with clinical parameters in HIV-1 subtype A/E infection | AIDS. 2016 Mar 13;30(5):681-9 | 1.23e-160 | 366 | 366 | Naive | Plasma | Direct PCR | HLA |
| Tremeaux (2023) | In-depth characterization of full-length archived viral genomes after nine years of posttreatment HIV control | Unpublished | 3.11e-168 | 363 | |||||
| Treurnicht (2010) | Adaptive changes in HIV-1 subtype C proteins during early infection are driven by changes in HLA-associated immune pressure | Virology 396 (2), 213-225 (2010) | 5.2e-149 | 20 | |||||
| Trinh (2016) | HIV vaccine development based on Vietnamese HIV-1 strains | Unpublished | 1.86e-159 | 5 | Unpublished | ||||
| Triques (2016) | Near-full-length genome sequencing of divergent African HIV type 1 subtype F viruses leads to the identification of a new HIV type 1 subtype designated K | AIDS Res. Hum. Retroviruses 16 (2), 139-151 (2000) | 1.75e-148 | 5 | |||||
| Triques (2016) | High diversity of HIV-1 subtype F strains in Central Africa | Virology 259 (1), 99-109 (1999) | 7.71e-147 | 10 | |||||
| Tristem (2016) | Nucleotide sequence of a Guinea-Bissau-derived human immunodeficiency virus type 2 proviral clone (HIV-2CAM2) | J. Gen. Virol. 72 (PT 3), 721-724 (1991) | 5.39e-102 | 1 | |||||
| Tsui (2016) | Full genome analysis of an emerging cluster of human immunodeficiency virus type 1 subtype B infection in Hong Kong | AIDS Res. Hum. Retroviruses 26 (1), 117-122 (2010) | 7.66e-153 | 3 | |||||
| Tsui (2005) | Direct Submission | Submitted (10-OCT-2005) Department of Medicine, Th | 4.89e-144 | 1 | Unpublished | ||||
| Tsui (2016) | Direct Submission | Submitted (11-NOV-2009) School of Biomedical Scien | 2.34e-143 | 1 | Unpublished | ||||
| Tsujimoto (2016) | Sequence of a novel simian immunodeficiency virus from a wild-caught African mandrill | Nature 341 (6242), 539-541 (1989) | 1.5e-90 | 1 | |||||
| Tuladhar (2024) | Human immunodeficiency virus-1 genome from patient with fever, Nepal | Unpublished | 9.06e-145 | 1 | |||||
| Tully (2016) | Differences in the Selection Bottleneck between Modes of Sexual Transmission Influence the Genetic Composition of the HIV-1 Founder Virus | PLoS Pathog. 12 (5), E1005619 (2016) | 6.35e-155 | 73 | 73 | Naive | Plasma | SGS; NGS | Acute infection |
| Tumiotto (2017) | Sanger and Next-Generation Sequencing data for characterization of CTL epitopes in archived HIV-1 proviral DNA | PLoS ONE 12 (9), E0185211 (2017) | 1.37e-167 | 4 | |||||
| Turnbull (2010) | Kinetics of expansion of epitope-specific T cell responses during primary HIV-1 infection | J. Immunol. 182 (11), 7131-7145 (2009) | 5.74e-165 | 16 | |||||
| Tzitzivacos (2016) | Viral genetic determinants of nonprogressive HIV type 1 subtype C infection in antiretroviral drug-naive children | AIDS Res. Hum. Retroviruses 25 (11), 1141-1148 (20 | 1.33e-149 | 7 | |||||
| Uchiyama (2011) | Epidemiological survey of HIV-1 detected in blood plasmas derived from the Japan Red Cross Society | Unpublished | 1.13e-172 | 84 | Unpublished | ||||
| Ueda (2019) | Transmission dynamics of HIV-1 subtype B strains in Indonesia | Sci Rep 9 (1), 13986 (2019) | 6.29e-154 | 9 | |||||
| Umeki-Sakamoto (2013) | Molecular characterization of infectious molecular clones derived from HIV-2 CRF01_AB isolated in Japan | Unpublished | 3.35e-104 | 6 | Unpublished | ||||
| Umeki-Sakamoto (2013) | Molecular characterization of infectious molecular clones derived from mult-idrug-resistant HIV-1 subtype B in Japan | Unpublished | 4.83e-151 | 8 | Unpublished | ||||
| Umeki-Sakamoto (2013) | Molecular characterization of infectious molecular clones derived from HIV-2 group A isolated in Japan | Unpublished | 5.03e-105 | 2 | Unpublished | ||||
| Umeki-Sakamoto (2016) | Construction and characterization of infectious molecular clones derived from japanese blood donors | Unpublished | 4.27e-153 | 10 | Unpublished | ||||
| Umeki-Sakamoto (2016) | Characterization of drug-resistance mutation profile kinetics in HIV-1 with infectious molecular clones | Unpublished | 7.47e-153 | 5 | Unpublished | ||||
| Umviligihozo (2021) | Increased frequency of inter-subtype HIV-1 recombinants identified by near full-length virus sequencing in a Rwanda acute heterosexual transmission cohort | Front Microbiol. 2021 Oct 7;12:734929. | 9.92e-148 | 286 | 47 | Naive | Plasma | SGS | Molecular epidemiology |
| Unger (2001) | Simian immunodeficiency virus (SIVmac) exhibits complex splicing for tat, rev, and env mRNA | Virology 182 (1), 177-185 (1991) | 8.61e-100 | 1 | |||||
| Vadaq (2025) | Longitudinal Plasma Proteomic Signatures of Elite and Viremic Spontaneous HIV Controllers | Unpublished | 2.8e-156 | 116 | |||||
| Vallari (2016) | Confirmation of Putative HIV-1 Group P in Cameroon | J. Virol. 85 (3), 1403-1407 (2011) | 2.21e-121 | 1 | |||||
| Vallari (2016) | Four new HIV-1 group N isolates from Cameroon: Prevalence continues to be low | AIDS Res. Hum. Retroviruses 26 (1), 109-115 (2010) | 2.26e-131 | 3 | |||||
| van Beveren (2016) | Appendix B: ARV-2 genome | (in) Weiss,R.L., Teich,N., Varmus,H. and Coffin,J. | 3.77e-155 | 1 | |||||
| van Beveren (2016) | Appendix B: HTLV-3/LAV genome | (in) Weiss,R.L., Teich,N., Varmus,H. and Coffin,J. | 4.99e-155 | 1 | |||||
| van der Hoek (2016) | Characterization of An HIV-1 Group M Variant That Is Distinct from The Known Subtypes | AIDS Res. Hum. Retroviruses 23 (3), 466-470 (2007) | 9.31e-148 | 4 | |||||
| van Harmelen (2016) | Characterization of full-length HIV type 1 subtype C sequences from South Africa | AIDS Res. Hum. Retroviruses 17 (16), 1527-1531 (20 | 2.51e-149 | 4 | |||||
| Van Heuverswyn (2016) | Genetic diversity and phylogeographic clustering of SIVcpzPtt in wild chimpanzees in Cameroon | Virology 368 (1), 155-171 (2007) | 1.49e-142 | 2 | |||||
| Vanden Haesevelde (1996) | Genomic cloning and complete sequence analysis of a highly divergent African human immunodeficiency virus isolate | J. Virol. 68 (3), 1586-1596 (1994) | 1.38e-120 | 1 | |||||
| Vanden Haesevelde (2016) | Sequence analysis of a highly divergent HIV-1-related lentivirus isolated from a wild captured chimpanzee | Virology 221 (2), 346-350 (1996) | 1.71e-119 | 1 | |||||
| Vartanian (2004) | Sustained G-->A hypermutation during reverse transcription of an entire human immunodeficiency virus type 1 strain Vau group O genome | J. Gen. Virol. 83 (PT 4), 801-805 (2002) | 3.09e-118 | 2 | |||||
| Vautrin (2023) | Direct Submission | Submitted (02-MAR-2023) Seine Maritime, CHU de Rou | 1.94e-116 | 2 | |||||
| Vautrin (2023) | First evidence of a mother to child transmission of an HIV-1/MO intergroup recombinant form | Unpublished | 2.2e-116 | 2 | |||||
| Vaz (2015) | Molecular Characterization of the Human Immunodeficiency Virus Type 1 in Women and Their Vertically Infected Children | AIDS Res. Hum. Retroviruses 31 (10), 1046-1051 (20 | 2.33e-173 | 39 | 39 | ART | Blood | Direct PCR | Molecular epidemiology |
| Vela (2024) | Profound reduction of HIV-1 reservoir cells over three decades of antiretroviral therapy started in early infancy | JCI Insight (2024) In press | 3.03e-162 | 218 | |||||
| Ventura (2021) | Direct Submission | Submitted (13-JAN-2021) Center for Virology and Va | 8.31e-101 | 87 | 44 | ART | PBMC | SGS | NonM, HIV2, SIV |
| Ventura (2021) | Direct Submission | Submitted (12-JAN-2021) Center for Virology and Va | 1.52e-100 | 11 | Unpublished | ||||
| Vergne (2016) | Biological and genetic characteristics of HIV infections in Cameroon reveals dual group M and O infections and a correlation between SI-inducing phenotype of the predominant CRF02_AG variant and disease stage | Virology 310 (2), 254-266 (2003) | 2.42e-169 | 91 | 49 | Mixed | Plasma; PBMC | Direct PCR | Molecular epidemiology |
| Vessiere (2016) | First evidence of a HIV-1 M/O recombinant form circulating outside Cameroon | AIDS 24 (7), 1079-1082 (2010) | 5.86e-125 | 1 | |||||
| Vetter (2014) | Generation of a Recombinant Gag Virus-Like-Particle Panel for the Evaluation of p24 Antigen Detection by Diagnostic HIV Tests | PLoS ONE 9 (10), E111552 (2014) | 1.78e-166 | 42 | 42 | Naive | Plasma | Molecular clones | Molecular epidemiology |
| Vibholm (2019) | Characterization of intact proviruses in blood and lymph node from HIV-infected individuals undergoing analytical treatment interruption | J Virol. 2019 Apr 3;93(8):e01920-18. | 2.22e-154 | 475 | 5 | ART | PBMC | SGS | Reservoir |
| Vidal (2005) | Direct Submission | Submitted (03-JUN-2002) Vidal N., UR 36, I.R.D, BP | 8.51e-151 | 2 | Unpublished | ||||
| Vidal (2005) | Genetic variability of HIV-1 strains in chad: high prevalence of recombinant strains and identification of a new D' variant | Unpublished | 8.51e-151 | 2 | Unpublished | ||||
| Vidal (2006) | Identification and molecular characterization of subsubtype A4 in central Africa | AIDS Res. Hum. Retroviruses 22 (2), 182-187 (2006) | 1.13e-145 | 3 | |||||
| Vidal (2009) | Genetic characterization of eight full-length HIV type 1 genomes from the Democratic Republic of Congo (DRC) reveal a new subsubtype, A5, in the A radiation that predominates in the recombinant structure of CRF26_A5U | AIDS Res. Hum. Retroviruses 25 (8), 823-832 (2009) | 1.85e-146 | 8 | |||||
| Vidal (2016) | Identification of a complex env subtype E HIV type 1 virus from the democratic republic of congo, recombinant with A, G, H, J, K, and unknown subtypes | AIDS Res. Hum. Retroviruses 16 (18), 2059-2064 (20 | 4.59e-159 | 2 | |||||
| Vidal (2016) | Unprecedented degree of human immunodeficiency virus type 1 (HIV-1) group M genetic diversity in the Democratic Republic of Congo suggests that the HIV-1 pandemic originated in Central Africa | J. Virol. 74 (22), 10498-10507 (2000) | 2.43e-149 | 62 | 62 | Naive | PBMC | Direct PCR | Molecular epidemiology |
| Vidal (2016) | High genetic diversity of HIV-1 strains in Chad, West Central Africa | J. Acquir. Immune Defic. Syndr. 33 (2), 239-246 (2 | 5.42e-167 | 109 | 107 | Naive | PBMC | Direct PCR | Molecular epidemiology |
| Vidal (2016) | Characterization of an old complex circulating recombinant form, CRF27_cpx, originating from the Democratic Republic of Congo (DRC) and circulating in France | AIDS Res. Hum. Retroviruses 24 (2), 315-321 (2008) | 1.59e-146 | 2 | |||||
| Villabona Arenas (2018) | Divergent HIV-1 strains (CRF92_C2U and CRF93_cpx) co-circulating in the Democratic Republic of the Congo: Phylogenetic insights on the early evolutionary history of subtype C | Virus Evol 3 (2), vex032 (2017) | 2.26e-147 | 8 | |||||
| Vinner (2016) | Sequence analysis of near full-length Human immunodeficiency virus type 1 sequences from Guinea-Bissau; selection of vaccine epitopes relevant in both West African and European countries | Unpublished | 1.83e-152 | 3 | Unpublished | ||||
| Vinoles (2005) | Seroincidence and phylogeny of human immunodeficiency virus infections in a cohort of commercial sex workers in Montevideo, Uruguay | Am. J. Trop. Med. Hyg. 72 (4), 495-500 (2005) | 1.16e-153 | 4 | |||||
| Violari (2019) | A child with perinatal HIV infection and long-term sustained virological control following antiretroviral treatment cessation | Nat Commun 10 (1), 412 (2019) | 6.19e-161 | 20 | |||||
| Viputtijul (2016) | Heterosexually acquired CRF01_AE/B recombinant HIV type 1 found in Thailand | AIDS Res. Hum. Retroviruses 18 (16), 1235-1237 (20 | 6.29e-143 | 1 | |||||
| Visawapoka (2016) | Circulating and unique recombinant forms of HIV type 1 containing subsubtype A2 | AIDS Res. Hum. Retroviruses 22 (7), 695-702 (2006) | 3.81e-148 | 4 | |||||
| Wain-Hobson (1993) | Nucleotide sequence of the AIDS virus, LAV | Cell 40 (1), 9-17 (1985) | 1.01e-155 | 1 | |||||
| Wang (2004) | First demonstration of a lack of viral sequence evolution in a nonprogressor, defining replication-incompetent HIV-1 infection | Virology 312 (1), 135-150 (2003) | 7.97e-154 | 4 | |||||
| Wang (2024) | Identification of two novel HIV-1 unique recombinant forms (CRF01_AE/CRF07_BC) and genomic characterization in Tongzhou district of Beijing, China | Unpublished | 4.22e-141 | 1 | |||||
| Wang (2024) | Genetic characteristics of two unique recombinant forms of HIV-1 (CRF01_AE/CRF07_BC) by near full-length genome in Hebei, China | Unpublished | 1.48e-141 | 2 | |||||
| Wang (2019) | Reduction of peak viremia by an integration-defective SIV proviral DNA vaccine in rhesus macaques | Microbiol. Immunol. (2019) In press | 2.41e-100 | 58 | NonM, HIV2, SIV | ||||
| Wang (2017) | Immunologic and Virologic Mechanisms for Partial Protection from Vigorous Intravenous Challenge by an Integration-defective SIV Vaccine | Viruses. 2017 Jun 2;9(6):135. | 3.75e-107 | 212 | NonM, HIV2, SIV | ||||
| Wang (2017) | Characterization of a Novel HIV-1 Second-Generation Recombinant Form in Men Who Have Sex with Men in Beijing, China | AIDS Res. Hum. Retroviruses (2017) In press | 2.19e-145 | 1 | |||||
| Wang (2018) | Direct Submission | Submitted (16-NOV-2017) Division of Virology and I | 2.16e-153 | 1 | Unpublished | ||||
| Wang (2024) | Direct Submission | Submitted (09-OCT-2024) Health Quarantine Lab, Zhu | 2.39e-140 | 1 | |||||
| Wang (2016) | Direct Submission | Submitted (31-MAR-2016) Zhuhai International Trave | 2.85e-144 | 1 | Unpublished | ||||
| Wang (2018) | Identification of a novel recombinant HIV-1 01BC virus in Jilin, China | Unpublished | 2.83e-150 | 1 | Unpublished | ||||
| Wang (2024) | Identification of an imported HIV-1 A1/A7/G recombinant in Heilongjiang, China | Unpublished | 1.96e-140 | 1 | |||||
| Wang (2018) | Identification of a new HIV-1 circulating recombinant form CRF65_cpx strain in Jilin, China | AIDS Res. Hum. Retroviruses (2018) In press | 1.26e-146 | 1 | |||||
| Wang (2022) | Neutralization Sensitivity of HIV-1 CRF07_BC from an Untreated Patient With a Focus on Evolution Over Time | Unpublished | 4.32e-145 | 1 | |||||
| Wang (2014) | Near Full-Length Genome Characterization of a New CRF01_AE/CRF08_BC Recombinant Transmitted Between a Heterosexual Couple in Guangxi, China | AIDS Res. Hum. Retroviruses 30 (5), 484-488 (2014) | 5.24e-144 | 1 | |||||
| Wang (2012) | Near Full-Length Sequence Analysis of Two New HIV Type 1 Unique (CRF01_AE/B) Recombinant Forms Among Men Who Have Sex with Men in China | AIDS Res. Hum. Retroviruses 28 (4), 411-417 (2012) | 2.28e-152 | 2 | |||||
| Wang (2013) | The dynamic face of HIV-1 subtypes among men who have sex with men in Beijing, China | Curr. HIV Res. 9 (2), 136-139 (2011) | 1.72e-149 | 1 | |||||
| Wang (2017) | Genetic Characterization of a Unique Recombinant strain identified in Yunnan with genome comprised of B and C | AIDS Res. Hum. Retroviruses (2017) In press | 1.42e-145 | 1 | |||||
| Wang (2020) | Identification of a novel HIV-1 second-generation Circulating Recombinant Form CRF109_0107 in China | J Infect 81 (5), 816-846 (2020) | 1.07e-145 | 2 | |||||
| Wang (2022) | Markers of immune activation and inflammation are associated with higher levels of genetically-intact HIV in HIV-HBV co-infected individuals | Unpublished | 5.76e-166 | 1082 | |||||
| Wang (2016) | Identification of a novel HIV-1 unique (B/C) recombinant isolate in Sichuan of China | Unpublished | 2.35e-145 | 1 | Unpublished | ||||
| Wang (2016) | Near Full-Length Genome Identification of a Novel HIV type 1 CRF01_AE/B /C Recombinant Isolate in Sichuan, China | Unpublished | 2.39e-147 | 1 | Unpublished | ||||
| Wang (2016) | Identification of a Novel CRF01_AE/CRF07_BC Recombinant Form in Men Who Have Sex with Men in Sichuan, China | AIDS Res. Hum. Retroviruses 32 (7), 718-721 (2016) | 1.31e-141 | 1 | |||||
| Wang (2016) | Protective HLA class I alleles that restrict acute-phase CD8+ T-cell responses are associated with viral escape mutations located in highly conserved regions of human immunodeficiency virus type 1 | J. Virol. 83 (4), 1845-1855 (2009) | 3.64e-156 | 91 | 98 | Naive | PBMC | Direct PCR | HLA |
| Wang (2013) | Construction and Characterization of Highly Infectious Full-Length Molecular Clones of a HIV-1 CRF07_BC Isolate from Xinjiang, China | PLoS ONE 8 (11), E79177 (2013) | 1.11e-144 | 6 | |||||
| Wang (2016) | Construction and characterization of a full-length infectious molecular clone from the HIV type 1 subtype Thai-B isolated in Henan province, China | AIDS Res. Hum. Retroviruses 24 (2), 251-257 (2008) | 7.75e-149 | 1 | |||||
| Warachit (2007) | Aberrant life cycle of human immunodeficiency virus type 1 CRF15_01B-like clinical isolates from Thailand in human CD4+ T-cell lines | Microbes Infect. 9 (4), 449-459 (2007) | 3.58e-136 | 2 | |||||
| Warren (2020) | The HIV-1 latent reservoir is largely sensitive to circulating T cells | Elife 9 (2020) In press | 1.36e-162 | 605 | 25 | ART | PBMC; QVOA | SGS | Reservoir |
| Watanabe (2016) | The HIV-1 Late Domain-2 S40A Polymorphism Selected in HAART-Experienced Individuals Influences Protease Inhibitor Susceptibility | Unpublished | 6.53e-160 | 1 | Unpublished | ||||
| Watanaveeradej (2016) | Molecular epidemiology of HIV Type 1 in preparation for a Phase III prime-boost vaccine trial in Thailand and a new approach to HIV Type 1 genotyping | AIDS Res. Hum. Retroviruses 22 (8), 801-807 (2006) | 9.26e-153 | 27 | 26 | Naive | PBMC | Direct PCR | Molecular epidemiology |
| Watanaveeradej (2016) | Direct Submission | Submitted (26-MAR-2003) Threat Assessment, U.S. Mi | 2.32e-146 | 1 | Unpublished | ||||
| Wei (2014) | Direct Submission | Submitted (04-APR-2013) Division of Virology and I | 1.83e-146 | 5 | Unpublished | ||||
| Wei (2015) | Direct Submission | Submitted (05-JUN-2013) Division of Virology and I | 7.31e-149 | 15 | Unpublished | ||||
| Wei (2014) | Identification of a Novel HIV-1 Circulating Recombinant Form (CRF62_BC) in Western Yunnan of China | AIDS Res. Hum. Retroviruses 30 (4), 380-383 (2014) | 7.36e-148 | 3 | |||||
| Wei (2014) | Genome Sequence of a Novel HIV-1 Circulating Recombinant Form (CRF57_BC) Identified from Yunnan, China | AIDS Res. Hum. Retroviruses 29 (2014) In press | 2.59e-150 | 2 | |||||
| Wei (2013) | Near Full-Length Genomic Characterization of a Novel HIV Type 1 CRF07_ BC/01_AE Recombinant in Men Who Have Sex with Men from Sichuan, China | AIDS Res. Hum. Retroviruses 29 (8), 1173-1176 (201 | 1.64e-143 | 1 | |||||
| Wei (2018) | Env-defective HIV-1 mutant affects the variety of proviruses by recombination with the wild type virus | Unpublished | 2.18e-152 | 8 | Unpublished | ||||
| Wei (2004) | Biased G-to-A hypermutation in HIV-1 proviral DNA from a long-term non-progressor | AIDS 18 (13), 1863-1865 (2004) | 8.53e-147 | 1 | |||||
| Wei (2019) | Identification of a Novel HIV-1 CRF01_AE/ B Recombinant Isolate in Guangxi, China | Unpublished | 8.41e-144 | 1 | Unpublished | ||||
| Whitcomb (2014) | Reference sequence used by Monogram Biosciences for genotyping assays of HIV | Unpublished | 1.34e-153 | 1 | Unpublished | ||||
| White (2023) | Clonally expanded HIV-1 proviruses with 5 prime-Leader defects can give rise to nonsuppressible residual viremia | Unpublished | 1.8e-153 | 121 | |||||
| Wichukchinda (2005) | Heterosexual transmission of novel CRF01_AE and subtype B recombinant forms of HIV type 1 in northern Thailand | AIDS Res. Hum. Retroviruses 21 (8), 734-738 (2005) | 2.52e-151 | 3 | |||||
| Wilbe (2016) | Identification of two CRF11-cpx genomes and two preliminary representatives of a new circulating recombinant form (CRF13-cpx) of HIV type 1 in Cameroon | AIDS Res. Hum. Retroviruses 18 (12), 849-856 (2002 | 5.14e-145 | 4 | |||||
| Wilbe (2016) | Characterization of novel recombinant HIV-1 genomes using the branching index | Virology 316 (1), 116-125 (2003) | 7.79e-146 | 4 | |||||
| Wilkinson (2015) | Sequencing and Phylogenetic Analysis of Near Full-Length HIV-1 Subtypes A, B, G and Unique Recombinant AC and AD Viral Strains Identified in South Africa | AIDS Res. Hum. Retroviruses 31 (4), 412-420 (2015) | 2.48e-151 | 7 | |||||
| Wilkinson (2016) | Molecular characterization of non-subtype C and recombinant HIV-1 viruses from Cape Town, South Africa | Unpublished | 3.05e-154 | 4 | Unpublished | ||||
| Willey (1996) | Identification of conserved and divergent domains within the envelope gene of the acquired immunodeficiency syndrome retrovirus | Proc. Natl. Acad. Sci. U.S.A. 83 (14), 5038-5042 ( | 2.5e-154 | 1 | |||||
| Williamson (2003) | Characterization and selection of HIV-1 subtype C isolates for use in vaccine development | AIDS Res. Hum. Retroviruses 19 (2), 133-144 (2003) | 6.35e-162 | 1 | |||||
| Wilson (2016) | Frequent detection of escape from cytotoxic T-lymphocyte recognition in perinatal human immunodeficiency virus (HIV) type 1 transmission: the ariel project for the prevention of transmission of HIV from mother to infant | J. Virol. 73 (5), 3975-3985 (1999) | 2.21e-172 | 43 | 11 | Naive | PBMC | SGS | HLA |
| Winckelmann (2016) | Peripheral blood cells contribute to HIV-1 viremia induced by romidepsin | Virus Evol. 2017 Mar 5;3(Suppl 1):vew036.004. | 1.99e-162 | 246 | 6 | ART | Plasma; PBMC | SGS | Reservoir |
| Winckelmann (2018) | Genetic characterization of the HIV-1 reservoir after Vacc-4x and romidepsin therapy in HIV-1 infected individuals during suppressive ART | AIDS. 2018 Aug 24;32(13):1793-1802. | 5.91e-163 | 1159 | 7 | ART | PBMC | SGS | Reservoir |
| Wirden (2019) | New HIV-1 circulating recombinant form 94: from phylogenetic detection of a large transmission cluster to prevention in the age of geosocial-networking apps in France, 2013 to 2017 | Euro Surveill. 24 (39) (2019) | 4.62e-146 | 6 | |||||
| Wirden (2022) | CRF94 and CRF132 HIV recombinants | Unpublished | 2.56e-144 | 5 | |||||
| Wolinsky (2016) | Complex Pathways of HIV Immune Escape | Unpublished | 3.72e-170 | 24 | Unpublished | ||||
| Wong-Staal (1993) | Complete nucleotide sequence of the AIDS virus, HTLV-III | Nature 313 (6000), 277-284 (1985) | 2.47e-157 | 3 | |||||
| Worobey (2016) | 1970s and 'Patient 0' HIV-1 genomes illuminate early HIV/AIDS history in North America | Nature 539, 98-101 (2016) | 1.66e-155 | 11 | |||||
| Wright (2012) | The impact of HLA-B*81-associated mutations in HIV-1 Gag on viral replication capacity | J. Virol. 86 (6), 3193-3199 (2012) | 7.06e-158 | 1 | |||||
| Wright (2016) | Gag-protease-mediated replication capacity in HIV-1 subtype C chronic infection: associations with HLA type and clinical parameters | J. Virol. 84 (20), 10820-10831 (2010) | 4.91e-162 | 405 | 405 | Naive | Plasma | Direct PCR | HLA |
| Wright (2016) | Influence of Gag-Protease-Mediated Replication Capacity on Disease Progression in Individuals Recently Infected with HIV-1 Subtype C | J. Virol. 85 (8), 3996-4006 (2011) | 2.61e-161 | 73 | 60 | Naive | Plasma | Direct PCR | HLA |
| Wu (2013) | TRIM5 alpha Drives SIVsmm Evolution in Rhesus Macaques | PLoS Pathog. 9 (8), E1003577 (2013) | 2.52e-111 | 21 | |||||
| Wu (2012) | Sequential Evolution and Escape from Neutralization of Simian Immunodeficiency Virus SIVsmE660 Clones in Rhesus Macaques | J. Virol. 86 (16), 8835-8847 (2012) | 2.23e-103 | 4 | |||||
| Wu (2015) | TRIM5alpha restriction affects clinical outcome and disease progression in simian immunodeficiency virus-infected rhesus macaques | J. Virol. 89 (4), 2233-2240 (2015) | 7.01e-113 | 14 | |||||
| Wu (2012) | Identification of Drug Resistant Mutations in HIV-1 CRF07_BC Variants Selected by Nevirapine In Vitro | PLoS ONE 7 (9), E44333 (2012) | 7.27e-144 | 1 | |||||
| Wu (2015) | In Vitro Selection of HIV-1 CRF08_BC Variants Resistant to Reverse Transcriptase Inhibitors | AIDS Res. Hum. Retroviruses 31 (2), 260-270 (2015) | 2.32e-142 | 1 | |||||
| Wu (2013) | New Emerging Recombinant HIV-1 Strains and Close Transmission Linkage of HIV-1 Strains in the Chinese MSM Population Indicate a New Epidemic Risk | PLoS ONE 8 (1), E54322 (2013) | 1.52e-148 | 9 | |||||
| Wu (2016) | Construction and characterization of a full-length infectious clone from a fast-replicating, X4-tropic HIV-1 subtype B' isolate | Arch. Virol. 155 (12), 1923-1931 (2010) | 4.22e-151 | 4 | |||||
| Wu (2020) | Characterization of a novel HIV-1 unique recombinant form between CRF07_BC and CRF55_01B in men who have sex with men in Guangzhou, China | PLoS ONE 12 (4), E0175770 (2017) | 3.04e-145 | 1 | |||||
| Wymant (2020) | A hypervirulent strain of HIV-1 circulating in the Netherlands | Unpublished | 2.86e-150 | 17 | Unpublished | ||||
| Xi (2019) | Direct Submission | Submitted (16-JUL-2019) Department of AIDS Researc | 1.19e-144 | 2 | Unpublished | ||||
| Xia (2014) | HIV-1 Prevalence and Subtype/Recombinant Distribution among Travelers Entering China from Vietnam at the HeKou Port in the Yunnan Province, China, between 2003 and 2012 | J Med Virol. 2017 Jun;89(6):1112-1115. | 7.44e-158 | 83 | 196 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Xia (2016) | Phylogenetic characteristics of HIV-1 infection among Myanmar entering Yunnan, China between 2003 and 2012 | J Med Virol. 2017 Aug;89(8):1404-1411. | 4.35e-163 | 223 | 223 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Xia (2018) | HIV prevalence and phylogenetic characteristics among entry women in Yunnan Province between 2003 to 2012 | Unpublished | 1.82e-161 | 42 | Unpublished | ||||
| Xia (2016) | HIV Prevalence and Phylogenetic Characteristics among Entry Travelers in Xishuangbanna Prefecture, Yunnan Province, between 2003 and 2012 | J Med Virol. 2015 Sep;87(9):1500-9. | 1.46e-160 | 81 | 161 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Xia (2018) | High Prevalence of HIV-1 Transmitted Drug Resistance among Burmese Entering Travelers at Dehong Ports in Yunnan Province, China | BMC Infect Dis. 2018 May 8;18(1):211. | 9.87e-162 | 32 | 32 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Xiao (2022) | Characterization of a Newly Emerging HIV-1 Second-Generation Recombinant Form (CRF126_0107) Among Heterosexuals in Yunnan, China | J Infect (2022) In press | 7.48e-144 | 4 | |||||
| Xiao (2025) | A novel HIV-1 circulating recombinant form (CRF168_0107) identified from men who have sex with men in Beijing, China | J Infect 90 (1), 106368 (2025) | 1.9e-141 | 4 | |||||
| Xie (2020) | The Genetic Diversity of HIV-1 Within Antiretroviral-Naive Outpatients in Ganzhou, China | AIDS Res. Hum. Retroviruses (2020) In press | 2.39e-150 | 6 | Unpublished | ||||
| Xie (2021) | Genetic Characteristics of Three Unique Recombinant Forms of HIV-1 in Yunnan, China | AIDS Res Hum Retroviruses (2021) In press | 3.26e-147 | 3 | |||||
| Xie (2025) | Genetic diversity of HIV in Yunnan, China: the role of second-generation recombination involving circulating and unique recombinant forms | Virol J 22 (1), 240 (2025) | 9.98e-147 | 8 | |||||
| Xin (2020) | Untitled | Unpublished | 2.03e-144 | 7 | Unpublished | ||||
| Xing (2025) | Direct Submission | Submitted (24-APR-2025) Key Laboratory of Respirat | 2.55e-148 | 2 | |||||
| Xing (2022) | Identification of a new HIV-1 intersubtype circulating recombinant form (CRF123_0107) in Hebei province, China | J Infect 84 (3), e36-e39 (2022) | 3.16e-145 | 3 | |||||
| Xu (2024) | Microglia and macrophages alterations in the CNS during acute SIV infection: A single-cell analysis in rhesus macaques | PLoS Pathog 20 (9), e1012168 (2024) | 6.18e-99 | 1 | |||||
| Xu (2017) | Identification of a Novel HIV Type 1 Recombinant Form (CRF01_AE/CRF07_BC) in Men Who Have Sex with Men in Zhejiang, China | AIDS Res. Hum. Retroviruses 33 (7), 728-734 (2017) | 2.27e-142 | 1 | |||||
| Yamada (2000) | Comparison of proviral accessory genes between long-term nonprogressors and progressors of human immunodeficiency virus type 1 infection | Arch. Virol. 145 (5), 1021-1027 (2000) | 1.13e-172 | 55 | 14 | Naive | PBMC | Molecular clones | Miscellaneous |
| Yamaguchi (2002) | Evaluation of HIV type 1 group O isolates: identification of five phylogenetic clusters | AIDS Res. Hum. Retroviruses 18 (4), 269-282 (2002) | 1.72e-143 | 34 | NonM, HIV2, SIV | ||||
| Yamaguchi (2016) | Near full-length sequence of HIV type 1 subtype J strain 04CMU11421 from Cameroon | AIDS Res. Hum. Retroviruses 26 (6), 693-697 (2010) | 1.08e-144 | 1 | |||||
| Yamaguchi (2016) | HIV type 1 group M subtype G in Cameroon: five genome sequences | AIDS Res. Hum. Retroviruses 25 (4), 469-473 (2009) | 1.62e-144 | 5 | |||||
| Yamaguchi (2016) | Identification of HIV type 1 group N infections in a husband and wife in Cameroon: viral genome sequences provide evidence for horizontal transmission | AIDS Res. Hum. Retroviruses 22 (1), 83-92 (2006) | 7.65e-131 | 2 | |||||
| Yamaguchi (2016) | HIV type 2 intergroup recombinant identified in Cameroon | AIDS Res. Hum. Retroviruses 24 (1), 86-91 (2008) | 7.04e-103 | 2 | |||||
| Yamaguchi (2016) | HIV-1 Group N: evidence of ongoing transmission in Cameroon | AIDS Res. Hum. Retroviruses 22 (5), 453-457 (2006) | 1.9e-128 | 1 | |||||
| Yamaguchi (2016) | Near full-length genomes of 15 HIV type 1 group O isolates | AIDS Res. Hum. Retroviruses 19 (11), 979-988 (2003 | 2.77e-129 | 15 | |||||
| Yamaguchi (2016) | HIV infections in northwestern Cameroon: identification of HIV type 1 group O and dual HIV type 1 group M and group O infections | AIDS Res. Hum. Retroviruses 20 (9), 944-957 (2004) | 1.21e-148 | 13 | |||||
| Yamaguchi (2016) | HIV-2 Surveillance with Next-Generation Sequencing Reveals Mutations in a Cytotoxic Lymphocyte-Restricted Epitope Involved in Long-Term Nonprogression | AIDS Res. Hum. Retroviruses (2016) In press | 2.19e-104 | 8 | |||||
| Yamaguchi (2018) | Universal Target Capture of HIV Sequences From NGS Libraries | Front Microbiol 9, 2150 (2018) | 1.34e-151 | 31 | 31 | Naive | Plasma | NGS | Molecular epidemiology |
| Yamaguchi (2019) | Complete genome sequence of CG-0018a-01 establishes HIV-1 subtype L | J. Acquir. Immune Defic. Syndr. (2019) In press | 4.82e-146 | 1 | |||||
| Yan (2015) | CRF01_AE/B/C, a Novel Drug-Resistant HIV-1 Recombinant in Men Who Have Sex with Men in Beijing, China | AIDS Res. Hum. Retroviruses 31 (7), 745-748 (2015) | 1.52e-147 | 1 | |||||
| Yang (2016) | Genetic diversity and high proportion of intersubtype recombinants among HIV type 1-infected pregnant women in Kisumu, western Kenya | AIDS Res. Hum. Retroviruses 20 (5), 565-574 (2004) | 2.28e-151 | 36 | 36 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Yang (2020) | A recombinant between CRF01_AE and CRF07_BC from Henan Province, China | Unpublished | 1.08e-147 | 3 | Unpublished | ||||
| Yang (2020) | A novel recombinant from Henan Province, China | Unpublished | 1.8e-152 | 1 | Unpublished | ||||
| Yang (2021) | The significant changes of gene types for HIV-1 strains circulating in Henan province, China | Unpublished | 3.74e-165 | 194 | |||||
| Yang (2016) | Identification and characterization of a new class of human immunodeficiency virus type 1 recombinants comprised of two circulating recombinant forms, CRF07_BC and CRF08_BC, in China | J. Virol. 77 (1), 685-695 (2003) | 4.96e-153 | 5 | |||||
| Yang (2016) | On-going generation of multiple forms of HIV-1 intersubtype recombinants in the Yunnan Province of China | AIDS 16 (10), 1401-1407 (2002) | 5.22e-163 | 39 | 39 | Uncertain | Plasma; Cultured PBMC | Direct PCR | Molecular epidemiology |
| Yang (2024) | Characterization of two novel HIV-1 second-generation recombinants (CRF01_AE/CRF07_BC) identified in Hebei Province, China | Front Microbiol 14, 1159928 (2023) | 1.98e-142 | 1 | |||||
| Yang (2019) | Characterization of a novel HIV-1 recombinant form (crf01_ae/ crf07_bc/ crf08_bc) identified from Guangxi, China | Unpublished | 8.41e-144 | 1 | Unpublished | ||||
| Yang (2019) | Identification of a Novel HIV-1 Recombinant Form (CRF01_AE/ CRF07_BC) Identified from an Intravenous Drug User in Guangxi, China | Unpublished | 1.86e-145 | 1 | Unpublished | ||||
| Yao (2020) | Direct Submission | Submitted (16-DEC-2019) Department of AIDS Researc | 3.11e-145 | 2 | Unpublished | ||||
| Yao (2015) | Trends of subtype variation of human immunodeficiency virus type 1 in Zhejiang Province, China | Virus Genes 50 (1), 22-28 (2015) | 1.25e-153 | 156 | 451 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Yao (2020) | Untitled | Unpublished | 1.08e-145 | 3 | Unpublished | ||||
| Ye (2016) | Sequence Analysis of the gag-pol Gene of Human Immunodeficiency Virus Type 1 of Intersubtype (B'/C) Recombinant Strain in Beijing, China | AIDS Res. Hum. Retroviruses 27 (3), 331-337 (2011) | 9.63e-158 | 39 | 39 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Ye (2023) | Direct Submission | Submitted (03-NOV-2022) Public Health, Guangxi Med | 1.75e-141 | 2 | |||||
| Ye (2021) | Identification of three novel HIV-1 circulating recombinant forms in southwestern Yunnan of China | Unpublished | 1.38e-147 | 15 | Unpublished | ||||
| Yebra (2018) | A high HIV-1 strain variability in London, UK, revealed by full-genome analysis: Results from the ICONIC project | PLoS ONE 13 (2), e0192081 (2018) | 5.42e-169 | 342 | 342 | ART | Plasma | Direct PCR | Molecular epidemiology |
| Yin (2016) | Differences in Variation of Human Immunodeficiency Virus Type 1 Sequences from Henan and Shanghai Regions of China | Virol Sin 22 (3), 212-217 (2007) | 2.32e-171 | 37 | Unpublished | ||||
| Yin (2020) | Identification of a novel HIV-1 second-generation recombinant form (CRF01_AE/CRF07_BC) among men who have sex with men in Jiangsu, China | Unpublished | 1.21e-144 | 1 | Unpublished | ||||
| Yin (2021) | First Detection of a Cluster Novel HIV-1 Second-Generation Recombinant (CRF01_AE/CRF07_BC) among Men Who Have Sex with Men in Nanjing, Eastern China | Intervirology 64 (2), 81-87 (2021) | 2.55e-147 | 9 | |||||
| Ying (2022) | Direct Submission | Submitted (09-MAR-2021) AIDS Research, Beijing Ins | 1.66e-147 | 4 | |||||
| York-Higgins (2016) | Human immunodeficiency virus type 1 cellular host range, replication, and cytopathicity are linked to the envelope region of the viral genome | J. Virol. 64 (8), 4016-4020 (1990) | 1.74e-152 | 1 | |||||
| Yoshimura (1996) | Intrapatient sequence variation of the gag gene of human immunodeficiency virus type 1 plasma virions | J. Virol. 70 70 (12), 8879-8887 (1996) | 4.03e-171 | 40 | 4 | Naive | Plasma | Molecular clones | Miscellaneous |
| Yu (2024) | Near full-length sequence analysis of two new recombinants (CRF_01AE/CRF_07BC) in MSM populations in Beijing, China | Unpublished | 2e-139 | 2 | |||||
| Yue (2015) | Transmitted Virus Fitness and Host T Cell Responses Collectively Define Divergent Infection Outcomes in Two HIV-1 Recipients | PLoS Pathog. 11 (1), E1004565 (2015) | 1.53e-144 | 90 | 4 | Naive | Plasma; PBMC | SGS | Acute infection |
| Yue (2024) | Phenotypic characterization of subtype A and AC recombinant transmitted/founder viruses from a Rwandan heterosexual transmission cohort | Unpublished | 5.04e-142 | 1 | |||||
| Yuste (2016) | Unusual distribution of mutations associated with serial bottleneck passages of human immunodeficiency virus type 1 | J. Virol. 74 (20), 9546-9552 (2000) | 1.97e-152 | 8 | |||||
| Zagury (2016) | Genetic variability between isolates of human immunodeficiency virus (HIV) type 2 is comparable to the variability among HIV type 1 | Proc. Natl. Acad. Sci. U.S.A. 85 (16), 5941-5945 ( | 3.02e-101 | 1 | |||||
| Zahra (2020) | Molecular analysis of HIV-1 isolates from regions of outbreak in Pakistan | Unpublished | 9.11e-146 | 5 | Unpublished | ||||
| Zahra (2020) | Direct Submission | Submitted (18-MAY-2020) Department of Biochemistry | 7.17e-147 | 8 | Unpublished | ||||
| Zaikos (2018) | Hematopoietic stem and progenitor cells are a unique HIV reservoir that contribute to persistent viremia in suppressed patients | Unpublished | 2.71e-155 | 9 | Unpublished | ||||
| Zarandia (2016) | HIV-1 genetic diversity and genotypic drug susceptibility in the Republic of Georgia | AIDS Res. Hum. Retroviruses 22 (5), 470-476 (2006) | 3.46e-154 | 5 | |||||
| Zeng (2012) | Emergence of a New HIV Type 1 CRF01_AE Variant in Guangxi, Southern China | AIDS Res. Hum. Retroviruses 28 (10), 1352-1356 (20 | 4.69e-166 | 230 | 349 | Uncertain | Plasma | Direct PCR | Molecular epidemiology |
| Zeng (2014) | Reconstituting the epidemic history of mono lineage of HIV-1 CRF01_AE in Guizhou province, Southern China | Infect. Genet. Evol. 26C, 139-145 (2014) | 8.14e-162 | 33 | 33 | Uncertain | Plasma | Direct PCR | Molecular epidemiology |
| Zhang (2023) | Identification of two near-identical novel HIV-1 unique recombinant forms (CRF01_AE/B) among men who have sex with men in baoding, hebei, China | Front Genet 14, 1105739 (2023) | 1.82e-149 | 2 | |||||
| Zhang (2024) | Unique Molecular Signatures in Rebound Viruses from Antiretroviral Drug and CRISPR Treated HIV-1-Infected Humanized Mice | Unpublished | 1.88e-163 | 29 | |||||
| Zhang (2025) | A comparative analysis of near-full-length HIV-1 DNA quasispecies genome across distinct virologic responses reveals notable genetic variations in low-level viremia | Unpublished | 1.9e-149 | 188 | |||||
| Zhang (2020) | Direct Submission | Submitted (01-NOV-2019) School of Public Health, G | 1.9e-145 | 1 | Unpublished | ||||
| Zhang (2018) | Identification of a Long-standing HIV-1 Subtype B Transmission Cluster among Men Who Have Sex with Men in China | Unpublished | 1.41e-153 | 3 | Unpublished | ||||
| Zhang (2023) | Direct Submission | Submitted (15-JUN-2022) Department of HIV/AIDS Con | 1.09e-140 | 1 | |||||
| Zhang (2024) | Near-full-length genomic characterization of two novel HIV-1 unique recombinants (CRF01_AE/ CRF68_01B) and (CRF01_AE/CRF07_BC) in Shijiazhuang, Hebei Province, China | Unpublished | 2.43e-143 | 2 | |||||
| Zhang (2018) | Identification of two novel HIV-1 second-generation recombinant forms (CRF01_AE07_BC) in Shaanxi, China | Unpublished | 9.92e-146 | 2 | Unpublished | ||||
| Zhang (2019) | Near full-length genome of two unique (B/C) recombinant forms identified in Shaanxi, China | Unpublished | 3.81e-146 | 2 | Unpublished | ||||
| Zhang (2017) | Phylodynamic analysis revealed that epidemic of CRF07_BC strain in MSM drove its second spreading wave in China | AIDS Res. Hum. Retroviruses (2017) In press | 1.34e-161 | 54 | 54 | Naive | PBMC | Direct PCR | Molecular epidemiology |
| Zhang (2017) | A Novel Recombinant Form of HIV-1 CRF01_AE/CRF07_BC Identified by Near Full-Length Genome in Shaanxi, China | AIDS Res. Hum. Retroviruses 33 (12), 1270-1273 (20 | 2.68e-143 | 1 | |||||
| Zhang (2018) | Identification of a Novel HIV-1 Recombinant Form (B/C) in Men Who Have Sex with Men in Shaanxi, China | AIDS Res. Hum. Retroviruses 34 (5), 467-470 (2018) | 6.88e-151 | 1 | |||||
| Zhang (2019) | Identification of Three HIV-1 Unique (B/C) Recombinant Forms in Shaanxi, China | AIDS Res. Hum. Retroviruses 35 (9), 876-880 (2019) | 1.18e-148 | 3 | Unpublished | ||||
| Zhang (2012) | Parental LTRs Are Important in a Construct of a Stable and Efficient Replication-Competent Infectious Molecular Clone of HIV-1 CRF08_BC | PLoS ONE 7 (2), E31233 (2012) | 6.38e-147 | 2 | |||||
| Zhang (2019) | Direct Submission | Submitted (31-JAN-2019) The First Affiliated Hospi | 2.76e-142 | 1 | Unpublished | ||||
| Zhang (2014) | Identification and Characterization of a Novel HIV-1 Circulating Recombinant Form (CRF59_01B) Identified among Men-Who-Have-Sex-with-Men in China | PLoS ONE 9 (6), E99693 (2014) | 2.44e-145 | 3 | |||||
| Zhang (2022) | Direct Submission | Submitted (10-MAR-2022) HIV, Hebei Center for Dise | 2.13e-144 | 1 | |||||
| Zhang (2023) | Near-full-length genomic characteristics of three novel HIV-1 CRF01_AE/C recombinant forms among men who have sex with men in Hebei province, China | AIDS Res Hum Retroviruses (2023) In press | 1.48e-142 | 3 | |||||
| Zhang (2025) | Characterization of a novel HIV-1 second-generation circulating recombinant form (CRF144_07C) in Ganzhou, China | Genes Dis 12 (4), 101443 (2024) | 2.58e-145 | 14 | |||||
| Zhang (2018) | Characterization of a Novel HIV-1 Circulating Recombinant Form (CRF80_0107) among Men Who Have Sex with Men in China | Unpublished | 4.11e-145 | 2 | Unpublished | ||||
| Zhang (2020) | Genetic diversity, complicated recombination and deteriorating drug resistance among HIV-1 infected individuals in Wuhan, China | AIDS Res Hum Retroviruses. 2021 Mar;37(3):246-251. | 5.9e-163 | 98 | 98 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Zhao (2020) | HIV-1 molecular epidemiology and drug resistance-associated mutations among treatment-naive blood donors in China | Sci Rep. 2020 May 5;10(1):7571. | 6.67e-170 | 168 | 168 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Zhao (2021) | Identification, Genetic Characterization and Validation of Highly Diverse HIV-1 Viruses for Reference Panel Development | Viruses 13 (7), 1417 (2021) | 1.88e-149 | 37 | 36 | Naive | Plasma | Direct PCR | Molecular epidemiology |
| Zhao (2009) | Identification of new recombinant of CRF22 with subtype A1 or CRF02_AG of HIV-1 in Cameroon | Unpublished | 2.27e-140 | 1 | Unpublished | ||||
| Zhao (2012) | CRF22_01A1 is Involved in the Emergence of New HIV-1 Recombinants in Cameroon | J. Acquir. Immune Defic. Syndr. 60 (4), 344-350 (2 | 1.61e-146 | 13 | |||||
| Zhao (2016) | Identification and Genetic Characterization of a Novel CRF22_01A1 Recombinant Form of HIV Type 1 in Cameroon | AIDS Res. Hum. Retroviruses 26 (9), 1033-1045 (201 | 1.3e-144 | 3 | |||||
| Zhao (2014) | HIV-1 Transmission Among Injection Drug Users Leads To Novel Recombinants Circulating In Southern China | AIDS Res. Hum. Retroviruses 30 (10), 1006-1009 (20 | 9.56e-145 | 1 | |||||
| Zhou (2019) | Direct Submission | Submitted (13-JUN-2019) Virus and Immunology Labor | 4.95e-149 | 11 | Unpublished | ||||
| Zhou (2024) | Sequence Analysis of Inducible, Replication-Competent Virus Reveals No Evidence of HIV-1 Evolution During Suppressive Antiviral Therapy Indicating A Lack Of Ongoing Viral Replication | Unpublished | 9.89e-158 | 156 | |||||
| Zhou (2015) | Near Full-Length Identification of a Novel HIV-1 CRF01_AE/B/C Recombinant in Northern Myanmar | AIDS Res. Hum. Retroviruses 31 (8), 845-850 (2015) | 6.38e-145 | 1 | |||||
| Zhou (2019) | Characterization of a New HIV-1 CRF01_AE/ CRF07_BC recombinant virus in Tianjin, China | Unpublished | 2.09e-146 | 2 | Unpublished | ||||
| Zhu (2022) | Identification of a novel HIV-1 second-generation Circulating Recombinant Form CRF117_0107 in China | Unpublished | 2.11e-146 | 3 | |||||
| Zhu (2022) | Direct Submission | Submitted (21-OCT-2021) Department of AIDS Researc | 7.01e-145 | 1 | |||||
| Zhu (2022) | Direct Submission | Submitted (27-OCT-2021) Department of AIDS Researc | 1.84e-149 | 3 | |||||
| Zhu (2022) | Direct Submission | Submitted (30-OCT-2021) Department of AIDS Researc | 2.99e-147 | 3 | |||||
| Zhu (2023) | NFLG analysis first demonstrated the hidden circulation of second-generation recombination strains in HIV-1 CRF07_BC | Unpublished | 1.5e-147 | 176 | |||||
| Zhu (2023) | Direct Submission | Submitted (24-APR-2022) Department of Virology, St | 3.58e-145 | 1 | |||||
| Zhu (2025) | NFLG analysis first demonstrated the hidden circulation of second-generation recombination strains in HIV-1 CRF07_BC | Unpublished | 7.18e-156 | 27 | |||||
| Zhu (2021) | Direct Submission | Submitted (06-OCT-2020) Department of AIDS Researc | 5.82e-146 | 16 | Unpublished | ||||
| Zhu (2022) | Direct Submission | Submitted (08-MAY-2021) Department of Microbiology | 1.62e-144 | 2 | |||||
| Zhu (2009) | Direct Submission | Submitted (02-JUN-2009) AIDS, Beijing Internationa | 3.19e-152 | 5 | Unpublished | ||||
| Zhu (1997) | Was HIV present in 1959? | Nature 374 (6522), 503-504 (1995) | 9.52e-153 | 1 | |||||
| Zolt (2017) | Implementation of an HIV-1 Triple-Target NAT Assay in the Routine Screening at Three German Red Cross Blood Centres | Transfus Med Hemother 43 (3), 183-189 (2016) | 6.08e-154 | 2 | |||||
| zur Megede (2016) | Novel evolutionary analyses of full-length HIV type 1 subtype C molecular clones from Cape Town, South Africa | AIDS Res. Hum. Retroviruses 18 (17), 1327-1332 (20 | 8.46e-149 | 3 | |||||
| Zyryanova (2019) | Construction and characterization of infectious molecular clones of HIV-1 CRF63_02A1 | Unpublished | 7.23e-145 | 2 | Unpublished | ||||