Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Li (2013)	Genetic Characterization and Transmitted Drug Resistance of the HIV Type 1 Epidemic in Men Who Have Sex with Men in Beijing, China	AIDS Res. Hum. Retroviruses 29 (3), 633-637 (2013)	1.77e-168	99	95	Naive	Plasma	Direct PCR	Molecular epidemiology

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Accession	IsolateName	Country	Coll Date	MolType	Source	FirstAA	LastAA	MutList
JQ900844	2801	China	2010	genomic RNA	plasma	1	231	6A,14P,15L,31G,33N,54M,58I,92P,110N,128D,148V,178T,200S,207T,208G,225S
JQ900845	2802	China	2010	genomic RNA	plasma	1	231	6L,15L,68I,71D,96I,116T,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
JQ900846	2803	China	2010	genomic RNA	plasma	1	231	3I,6L,14P,41T,68I,71D,83I,116A,120A,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I
JQ900847	2804	China	2010	genomic RNA	plasma	1	231	6A,14P,15L,31G,33N,54M,58I,71D,83L,92P,128D,148V,149G,200S,207T,208G,225S
JQ900848	2805	China	2010	genomic RNA	plasma	1	231	6L,41T,83L,91V,120S,180D,199R,210S
JQ900849	2807	China	2010	genomic RNA	plasma	1	231	6L,14P,68I,71D,83L,96I,116T,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
JQ900850	2808	China	2010	genomic RNA	plasma	1	231	6L,15L,27I,36I,41T,68I,83L,86A,87Q,91V,120S,124V,135V,148V,180D,225S
JQ900851	2809	China	2010	genomic RNA	plasma	1	231	6L,14P,68I,71D,72A,83L,96L,116A,120A,124V,128D,154K,169F,171C,178T,180D,187D,203R,208G,210S,211I,225S
JQ900852	2811	China	2010	genomic RNA	plasma	1	231	6A,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,116A,128D,148V,178T,200S,207T,208G,225S,229K
JQ900853	2812	China	2010	genomic RNA	plasma	1	231	6L,15L,27I,41T,68I,83L,91V,110N,116A,120S,128D,148I,180D,187D,208G,210S,225S
JQ900854	2813	China	2010	genomic RNA	plasma	1	231	6A,15V,31G,33N,54C,58I,79D,83T,87Q,92P,96I,116A,128D,148V,178T,200S,207T,208G,225S
JQ900855	2814	China	2010	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83L,87Q,92P,96I,110N,116A,128D,148V,154K,178T,200S,207T,208G,225S
JQ900856	2815	China	2010	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96L,116A,128D,148V,178T,200A,203R,207S,208G,225S
JQ900857	2816	China	2010	genomic RNA	plasma	1	231	6L,27I,83L,154K,178T,225S
JQ900858	2817	China	2010	genomic RNA	plasma	1	231	6A,14P,31G,33N,54M,58I,79D,83I,96I,116A,128D,148V,178T,200S,207T,208G,225S
JQ900859	2818	China	2010	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,115M,116A,120S,128D,148I,178T,200S,207T,208G,225S
JQ900860	2819	China	2010	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,116A,128D,148V,178T,200S,207T,208G,210S,229K
JQ900861	2820	China	2010	genomic RNA	plasma	1	231	6L,15L,27I,41T,68I,83L,91V,98D,116A,124V,128D,148I,180D,187D,208G,229K
JQ900862	2821	China	2010	genomic RNA	plasma	1	231	6L,15L,27I,41T,68I,83L,87Q,91V,120S,128D,180D,225S
JQ900863	2822	China	2010	genomic RNA	plasma	1	231	6A,14S,15L,31G,33N,54M,58I,79D,83A,92P,110N,120S,128D,148V,200S,207T,208G,225S
JQ900864	2823	China	2010	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,110N,116A,120S,128D,148V,178T,200S,203R,208AG,225S
JQ900865	2825	China	2009	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,94N,96I,116A,120S,128D,148V,178T,200S,207T,208G,225S
JQ900866	2826	China	2009	genomic RNA	plasma	1	231	6L,15L,27I,36I,41T,68I,83L,87Q,91V,110N,116A,124V,135V,148V,180D,225S
JQ900867	2827	China	2009	genomic RNA	plasma	1	231	6A,15V,31G,33N,54M,58I,79D,83T,87P,92P,96I,116A,128D,148IT,178T,200S,207T,208G,225S,229K
JQ900868	2828	China	2009	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,116A,128D,148V,178T,200S,207T,208G
JQ900869	2829	China	2009	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,64G,79DE,83T,87Q,92P,96I,116A,128D,148V,149G,200S,207T,208G,225S
JQ900870	2830	China	2009	genomic RNA	plasma	1	231	6A,14P,15IV,31G,33N,54M,58I,78S,79D,83T,92P,116A,120S,128D,148V,178T,204S,207T,208G
JQ900871	2831	China	2009	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,91F,92P,96L,116A,128D,148V,178T,200S,207T,208G,225S
JQ900872	2832	China	2009	genomic RNA	plasma	1	231	6L,27I,41T,68I,83L,121T,128D,180D,208G,225S
JQ900873	2833	China	2009	genomic RNA	plasma	1	231	6A,14P,15L,31G,33N,54M,58I,79D,92P,110N,128D,148V,178T,200S,207T,208G,225S
JQ900874	2834	China	2009	genomic RNA	plasma	1	231	14P,68I,71D,83L,96I,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
JQ900875	2835	China	2009	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,110N,116A,128D,148V,178T,200S,203R
JQ900876	2836	China	2009	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,59I,71D,78V,83L,92P,120S,128D,148V,149G,200S,207T,208G,225S
JQ900877	2838	China	2009	genomic RNA	plasma	1	231	6L,15L,27I,41T,68I,83L,91V,128D,154K,180D,208G,225S
JQ900878	2839	China	2009	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,116A,120S,128D,129L,148V,178T,200S,207T,208G,225S
JQ900879	2840	China	2009	genomic RNA	plasma	1	231	6L,14P,44A,68I,71D,83L,116A,120S,124V,128D,129L,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
JQ900880	2841	China	2009	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,116A,128D,148V,178T,187D,200S,207T,208G
JQ900881	2842	China	2009	genomic RNA	plasma	1	231	6L,9A,14P,15L,27I,41T,68I,83L,96I,128D,180D,208G,225S
JQ900882	2843	China	2009	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,115V,116A,128D,148V,178T,200S,207T,208G,225S
JQ900883	2844	China	2009	genomic RNA	plasma	1	231	6M,96I,116T,154K,171V
JQ900884	2845	China	2009	genomic RNA	plasma	1	231	6L,27I,45D,68I,75D,83L,91V,128D,136M,141V,180D,225S
JQ900885	2848	China	2009	genomic RNA	plasma	1	231	6L,15L,27I,45D,68I,75D,83M,91V,120S,128D,180D,208G
JQ900886	2849	China	2010	genomic RNA	plasma	1	231	6A,14P,31G,33N,54M,58I,79D,83T,92P,96I,110N,116A,148V,178T,200S,207A,208G,225S
JQ900887	2850	China	2010	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,92P,96I,110N,116A,128D,148V,178T,200S,207T,208G,225S
JQ900888	2851	China	2007	genomic RNA	plasma	1	231	6A,14S,15L,31G,33N,54M,58I,87Q,92P,110N,120S,128D,148V,149G,200S,207T,208G,225S
JQ900889	2852	China	2007	genomic RNA	plasma	1	231	6L,83L,87Q,96IM,116A,208G
JQ900890	2853	China	2007	genomic RNA	plasma	1	231	6L,15L,27I,41T,68I,83L,87HP,91V,116A,120S,123A,128D,148I,180D,187D,225S
JQ900891	2854	China	2008	genomic RNA	plasma	1	231	15L,27I,41T,68I,83L,87HQ,91V,116AG,120S,128D,148I,180D,187D,208G,225S
JQ900892	2855	China	2007	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87P,92P,96I,116A,128D,148IV,178T,200S,207T,208G,225S
JQ900893	2856	China	2007	genomic RNA	plasma	1	231	6L,41T,83M,120S,180D,199R
JQ900894	2857	China	2007	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,83T,92P,110N,128D,148V,149G,178T,200S,207T,208G
JQ900895	2858	China	2007	genomic RNA	plasma	1	231	6T,14P,15L,31G,33N,54M,58I,92P,128D,148V,178T,200S,207T,208G
JQ900896	2859	China	2007	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,116A,128D,148V,178T,200S,203KR,207T,208G,225S
JQ900897	2860	China	2007	genomic RNA	plasma	1	231	6L,15L,27I,41T,83L,91V,148V,154K,209C,225A
JQ900898	2862	China	2008	genomic RNA	plasma	1	231	6A,14P,15L,31G,33N,54M,58I,79D,92P,128D,148V,178T,200S,207T,208G,225S
JQ900899	2863	China	2008	genomic RNA	plasma	1	231	6L,15L,68I,71D,83L,86I,110N,116A,120S,124V,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
JQ900900	2864	China	2008	genomic RNA	plasma	1	231	27I,41T,68I,83L,91V,116A,120S,123A,128D,148V,180D,187D
JQ900901	2865	China	2008	genomic RNA	plasma	1	231	6L,14P,68I,71D,83L,96I,116T,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S,229KR
JQ900902	2866	China	2008	genomic RNA	plasma	1	231	6L,14P,68I,71D,83L,116T,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
JQ900903	2867	China	2008	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83A,87Q,92P,110N,120S,148V,149G,199R,200S,207T,208G,225S
JQ900904	2868	China	2008	genomic RNA	plasma	1	231	6A,9V,14S,15L,31G,33N,54M,58I,92P,120S,124V,128D,148V,200S,207I,208G,225S
JQ900905	2869	China	2008	genomic RNA	plasma	1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,128D,148V,180D,200S,207T,208G,225S
JQ900906	2870	China	2008	genomic RNA	plasma	1	231	14P,68I,71D,83L,110N,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
JQ900907	2871	China	2008	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,116A,128D,148V,178T,200S,207T,208G,225S
JQ900908	2872	China	2008	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,116A,128D,148V,178T,200S,207T,208G
JQ900909	2873	China	2008	genomic RNA	plasma	1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,128D,148V,200S,207T,208G,225S
JQ900910	2874	China	2008	genomic RNA	plasma	1	231	6L,27I,41T,68I,83LM,91V,96IM,116A,120DGNS,124IV,128D,148I,180D,187D,208G,225S
JQ900911	2875	China	2008	genomic RNA	plasma	1	231	6L,78V,83L,87Q,96I,116T,183NT
JQ900912	2876	China	2008	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,116A,128D,148V,178T,200S,207T,208G,225S
JQ900913	2877	China	2008	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,116A,128D,148V,178T,200S,207T,208G,225S
JQ900914	2878	China	2008	genomic RNA	plasma	1	231	6L,15L,83L,120H,136M,225S
JQ900915	2879	China	2008	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,110N,116A,128D,148V,178ST,200S,207T,208G,225S
JQ900916	2880	China	2008	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,92P,96I,116A,128D,148V,178T,204S,207T,208G,225S
JQ900917	2882	China	2008	genomic RNA	plasma	1	231	6L,15L,41T,68I,83L,86A,91V,98D,116A,120S,124V,128D,180D,187D,208G,225S
JQ900918	2884	China	2008	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,110N,116A,128D,148V,178T,200S,207T,208G
JQ900919	2885	China	2008	genomic RNA	plasma	1	231	6A,15V,31G,33N,54M,58I,83T,87Q,92P,96I,116A,128D,148V,178T,200S,207T,208G,225S
JQ900920	2886	China	2008	genomic RNA	plasma	1	231	6A,14P,15L,31G,33N,54M,58I,78S,79D,83T,92P,116A,128D,148V,178T,204S,207T,208G,225S
JQ900921	2887	China	2008	genomic RNA	plasma	1	231	6L,15L,27I,41T,68I,83L,128D,180D,225S
JQ900922	2888	China	2008	genomic RNA	plasma	1	231	6L,15L,27I,41T,68I,83L,91V,116A,120S,128D,180D,187D,194S,208G,225S
JQ900923	2890	China	2008	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,92P,94N,96I,110N,116T,120S,128D,148V,178T,200S,207S,208G,225S
JQ900924	2891	China	2008	genomic RNA	plasma	1	231	6L,14S,15L,27I,41T,68I,83L,91V,120S,128D,180D,208G,225S
JQ900925	2892	China	2008	genomic RNA	plasma	1	231	6L,14P,68I,71D,83L,116A,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
JQ900926	2893	China	2009	genomic RNA	plasma	1	231	6L,14P,68I,71D,83L,91A,110N,116A,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
JQ900927	2895	China	2009	genomic RNA	plasma	1	231	6A,14P,15V,31G,33N,54M,58I,59I,71D,78V,83L,92P,120S,121T,128D,148V,149G,172FL,200S,207T,208G,225S
JQ900928	2896	China	2009	genomic RNA	plasma	1	231	6L,15L,27I,41T,68I,83L,91V,96I,116A,128D,148I,180D,187D,208G,225S
JQ900936	BB-137	China	2005	genomic RNA		1	231	6H,14P,68I,72A,83L,91V,116A,120NS,128D,148PS,154K,180D,208G,210N
JQ900942	BB-147	China	2005	genomic RNA		1	231	6L,14P,16ST,27IV,41T,120S,123AP
JQ900938	HS-125	China	2005	genomic RNA		1	231	6L,83L,154K,178T
JQ900929	HS-126	China	2005	genomic RNA		1	231	6L,27I,41T,68I,83L,120S,128D,180D,225S
JQ900930	HS-127	China	2005	genomic RNA		1	231	6L,15L,27I,41T,68I,83L,91V,116A,120NS,123PS,128D,136M,141V,148I,180D,187D,208G,225S
JQ900932	HS-133	China	2005	genomic RNA		1	231	6L,83L,154K,178T
JQ900933	HS-134	China	2005	genomic RNA		1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,128D,178T,200S,207T,208G,225S
JQ900934	HS-135	China	2005	genomic RNA		1	231	6L,83L,87Q,91V,120S,180D,210S,225S
JQ900939	HS-142	China	2005	genomic RNA		1	231	4KR,6L,14AP,37V,71D,83L,86A,87HQ,96I,110N,116A,154K,180D
JQ900941	HS-145	China	2005	genomic RNA		1	231	6L,15L,27I,41T,68I,83L,91V,116A,120S,128D,148I,180D,187D,225S
JQ900937	MC-138	China	2005	genomic RNA		1	231	6L,15L,83L,91V,95T,120S,148V,180D
JQ900931	UK-131	China	2005	genomic RNA		1	231	6L,15L,33N,36I,41T,83L,87Q,91V,96IM,120H,128D,148V,149C,154K,180D,208AS
JQ900935	UK-136	China	2005	genomic RNA		1	231	6L,14S,15L,41T,68I,83L,91V,128D,180D,208G,210N
JQ900940	UK-144	China	2005	genomic RNA		1	231	6L,11I,15L,27I,41T,68I,83L,91V,116A,120S,128D,148V,180D,225S

Genbank References: capsid (p24)

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