<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Bacchus-Souffan (2020) CD4 T cell proliferation and differentiation contribute to HIV persistence during antiretroviral therapy PLoS Pathog. 2021 Jan 19;17(1):e1009214 6.37e-166 219 24 ART PBMC SGS Reservoir

Download sequences

AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
MN4672821408_TCM_11USA2016genomic DNAsubtype: B(91.8%),C(3.9%),F2(4.3%)12316L,27I,71D,83L,116A,120H,124V,148I,180D
MN4672841408_TCM_13USA2016genomic DNAsubtype: CRF01_AE(1.7%),B(98.3%)12316L,27I,83L,116A,124V,148I,178T
MN4672871408_TCM_16USA2016genomic DNAsubtype:CRFA2(0.9%),01_AE(0.7%),A1(0.4%),B(97.1%),F1(0.5%),K(0.4%)12316L,27I,41T,71D,83L,91V,116A,120H,124V,148V,178T,200S
MN4672881408_TCM_17USA2016genomic DNAsubtype: B(93.1%),F2(6.9%)12316L,27I,71D,79D,83L,116A,120H,124V,148I,178T
MN4672891408_TCM_19USA2016genomic DNAsubtype: B(99.1%),H(0.9%)12316L,27I,75D,83L,116A,120H,124V,148I,180D
MN4672901408_TCM_20USA2016genomic DNAsubtype: CRF01_AE(0.1%),B(99.0%),C(0.6%),F2(0.3%)12316L,27I,75D,83L,116A,120H,124V,148I,178T
MN4672921408_TCM_22USA2016genomic DNAsubtype:CRF01_AE(0.4%),B(91.1%),D(1.2%),F1(0.8%),F2(0.5%),G(0.5%),H(4.2%),K(1.5%)12316L,27I,71D,83L,116A,120H,124V,148I,178T
MN4672931408_TCM_23USA2016genomic DNAsubtype:CRF01_AE(0.4%),B(91.1%),D(1.2%),F1(0.8%),F2(0.5%),G(0.5%),H(4.2%),K(1.5%)12316L,27I,71D,83L,116A,120H,124V,148I,178T
MN4672941408_TCM_26USA2016genomic DNAsubtype: B(100.0%)12316L,27I,71D,83L,116A,120H,124V,148I,178T
MN4672951408_TCM_28USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,83L,116A,120H,124V,148I,178T,200S
MN4672961408_TCM_29USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,83L,116A,120H,124V,148I,180D
MN4672971408_TCM_3USA2016genomic DNAsubtype:B(76.8%),C(4.5%),D(1.4%),F2(12.0%),G(0.9%),H(2.9%),J(0.3%),K(1.2%)12316L,27I,41T,71D,83L,91V,116A,120H,124V,148V,178T,200S
MN4672981408_TCM_30USA2016genomic DNAsubtype:A2(0.3%),B(88.5%),C(0.4%),F2(4.2%),G(6.6%)12316L,27I,41T,68I,71D,83L,116A,120H,124V,148I,180D
MN4673041408_TCM_4USA2016genomic DNAsubtype:CRF01_AE(1.2%),A1(2.4%),B(91.6%),C(0.1%),D(3.2%),G(0.1%),J(1.0%),K(0.4%)12316L,27I,41T,71D,83L,116A,120H,124V,148V,178T,200S
MN4673051408_TCM_42USA2016genomic DNAsubtype:CRF01_AE(0.2%),A1(3.0%),B(86.3%),C(2.2%),F1(0.3%),F2(7.1%),G(0.1%),H(0.4%),J(0.3%)12316L,27I,75D,83L,116A,124V,148I,180D
MN4673061408_TCM_44USA2016genomic DNAsubtype:CRF01_AE(0.3%),A1(5.2%),B(82.4%),C(5.1%),D(0.7%),F1(0.9%),F2(1.1%),H(2.7%),J(1.5%)12316L,27I,75D,83L,116A,124V,148I,178T
MN4673071408_TCM_45USA2016genomic DNAsubtype: A2(0.6%),B(98.6%),C(0.3%),K(0.5%)12316L,27I,41T,75D,83L,116A,124V,148I,180D
MN4673081408_TCM_46USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,83L,116A,120H,124V,148V,178T,200S
MN4673121408_TCM_9USA2016genomic DNAsubtype:CRF01_AE(0.2%),A1(0.1%),B(90.9%),C(4.6%),F1(3.8%),H(0.4%)12316L,27I,41T,71D,83L,116A,120H,124V,148V,178T,200S
MN4673211408_TEM_11USA2016genomic DNAsubtype:A2(2.7%),A1(1.4%),B(84.6%),C(1.8%),D(2.3%),F2(0.4%),G(5.4%),J(1.4%),K(0.1%)12316L,27I,41T,71D,83L,116A,120H,124V,148V,178T,200S
MN4673231408_TEM_14USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,72A,83L,116A,120H,124V,148V,178T,200S
MN4673241408_TEM_15USA2016genomic DNAsubtype:A2(1.3%),B(58.0%),C(13.7%),D(9.2%),F2(3.5%),G(2.4%),H(6.7%),J(5.1%)12316L,27I,41T,71D,83L,116A,120H,124V,148V,178T,200S
MN4673931408_TEM_22USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,83L,116A,120H,124V,148V,178T,200S
MN4673261408_TEM_24USA2016genomic DNAsubtype:A2(0.9%),B(93.3%),F2(1.5%),H(3.4%),J(0.9%)12316L,27I,41T,71D,83L,116A,120H,124V,148I,180D,183T
MN4673271408_TEM_25USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,72A,83L,116A,120H,124V,148V,178T,200S
MN4673281408_TEM_26USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,83L,116A,120H,124V,148V,178T,200S
MN4673941408_TEM_28USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,83L,116A,120H,124V,148V,178T,200S
MN4673291408_TEM_29USA2016genomic DNAsubtype: B(100.0%)12316L,27I,75D,83L,116A,148V,178T
MN4673301408_TEM_3USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,72A,83L,116A,120H,124V,148V,178T,200S
MN4673311408_TEM_30USA2016genomic DNAsubtype:A2(1.1%),B(61.7%),C(12.5%),D(8.4%),F2(3.2%),G(2.2%),H(6.1%),J(4.7%)12316L,27I,41T,71D,83L,116A,120H,124V,148V,178T,200S
MN4673321408_TEM_34USA2016genomic DNAsubtype: B(95.1%),C(4.9%)12316L,27I,41T,71D,83L,116A,120H,124V,148I,178T,200S
MN4673331408_TEM_36USA2016genomic DNAsubtype:CRFA2(1.2%),01_AE(0.4%),A1(0.6%),B(46.8%),C(16.9%),D(17.1%),F2(3.3%),G(2.3%),H(6.4%),J(4.9%)12316L,27I,41T,71D,83L,91V,116A,120H,124V,148V,178T,200S
MN4673341408_TEM_37USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,72A,83L,116A,120H,124V,148V,178T,200S
MN4673361408_TEM_4USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,83L,116A,120H,124V,148V,178T,200S
MN4673951408_TEM_40USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,83L,116A,120H,124V,148V,178T,200S
MN4673371408_TEM_5USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,72A,83L,116A,120H,124V,148V,178T,200S
MN4673381408_TEM_6USA2016genomic DNAsubtype: B(100.0%)12316L,27I,75D,83L,116A,148V,178T
MN4673391408_TEM_7USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,72A,83L,116A,120H,124V,148V,178T,200S
MN4673401408_TEM_8USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,72A,83L,116A,120H,124V,148V,178T,200S
MN4673411408_TEM_9USA2016genomic DNAsubtype:B(89.1%),C(1.9%),D(1.1%),F2(2.1%),G(5.4%),H(0.1%),K(0.3%)12316L,27I,75D,83L,89E,91V,116A,124V,148I,180D
MN4673131408_TEMRA_1USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,72A,83L,92V,116A,120H,124V,148V,178T,200S
MN4673141408_TEMRA_2USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,72A,83L,116A,120H,124V,148V,178T,200S
MN4673151408_TEMRA_3USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,72A,83L,116A,120H,124V,148V,178T,200S
MN4673161408_TEMRA_4USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,72A,83L,116A,120H,124V,148V,178T,200S
MN4673171408_TEMRA_5USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,72A,83L,116A,120H,124V,148V,178T,200S
MN4673181408_TEMRA_6USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,72A,83L,116A,120H,124V,148V,178T,200S
MN4673191408_TEMRA_7USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,72A,83L,116A,120H,124V,148V,178T,200S
MN4673201408_TEMRA_9USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,72A,83L,116A,120H,124V,148V,178T,200S
MN4673421408_TN_2USA2016genomic DNAsubtype:CRF01_AE(0.2%),A1(6.9%),B(85.4%),C(4.0%),D(0.5%),F2(1.5%),G(0.7%),K(0.7%)12316L,27I,71D,83L,116A,120H,124V,148I,180D
MN4673431408_TTM_1USA2016genomic DNAsubtype:CRFA2(0.1%),01_AE(0.9%),A1(6.1%),B(75.5%),C(0.1%),D(0.3%),F2(12.0%),G(3.4%),J(1.8%)12316L,27I,71D,83L,116A,120H,124V,148I,178T
MN4673441408_TTM_10USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,83L,116A,120H,124V,148V,178T,200S
MN4673451408_TTM_11USA2016genomic DNAsubtype: CRF01_AE(0.1%),A1(6.5%),B(90.3%),F2(3.1%)12316L,27I,83L,116A,124V,148I,225S
MN4673461408_TTM_12USA2016genomic DNAsubtype: B(100.0%)12296L,27I,83L,116A,120H,124V,148I,178T,229S
MN4673501408_TTM_18USA2016genomic DNAsubtype:CRF01_AE(0.4%),B(91.1%),D(1.2%),F1(0.8%),F2(0.5%),G(0.5%),H(4.2%),K(1.5%)12316L,27I,71D,83L,116A,120H,124V,148I,178T
MN4673511408_TTM_19USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,83L,116A,120H,124V,148V,178T,200S
MN4673521408_TTM_2USA2016genomic DNAsubtype: CRF01_AE(0.1%),A1(6.5%),B(90.3%),F2(3.1%)12316L,27I,83L,116A,124V,148I,225S
MN4673531408_TTM_20USA2016genomic DNAsubtype:A1(2.8%),B(90.1%),C(0.3%),D(0.1%),F2(1.4%),H(2.2%),J(0.3%),K(2.9%)12316L,27I,83L,116A,124V,148I,180D
MN4673541408_TTM_21USA2016genomic DNAsubtype:A1(0.9%),B(82.6%),D(0.8%),F2(11.4%),J(4.3%)12316L,27I,69*,75D,83L,116A,120H,124V,148I,178T
MN4673551408_TTM_23USA2016genomic DNAsubtype: B(100.0%)12316L,27I,83L,116A,120H,124V,148I,178T
MN4673571408_TTM_26USA2016genomic DNAsubtype:A2(2.4%),A1(4.2%),B(85.2%),C(0.9%),D(1.2%),F2(3.3%),G(1.1%),H(1.7%),J(0.1%)12316L,27I,41T,71D,83L,116A,120H,124V,148V,178T,200S
MN4673581408_TTM_28USA2016genomic DNAsubtype:CRFA2(0.4%),01_AE(1.4%),A1(5.1%),B(88.4%),C(1.0%),D(1.6%),F1(0.4%),F2(0.4%),G(0.9%),H(0.2%)12316L,27I,71D,79D,83L,116A,124V,148I,178T
MN4673621408_TTM_33USA2016genomic DNAsubtype:A1(3.2%),B(77.9%),D(1.6%),F1(15.7%),F2(0.1%),J(1.3%),K(0.2%)12316L,27I,71D,83L,91V,116A,120H,124V,148I,178T
MN4673631408_TTM_34USA2016genomic DNAsubtype: CRF01_AE(0.1%),A1(6.5%),B(90.3%),F2(3.1%)12316L,27I,83L,116A,124V,148I,225S
MN4673641408_TTM_35USA2016genomic DNAsubtype: CRF01_AE(0.1%),A1(6.5%),B(90.3%),F2(3.1%)12316L,27I,83L,116A,124V,148I,225S
MN4673661408_TTM_37USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,83L,116A,120H,124V,148V,178T,200S
MN4673681408_TTM_4USA2016genomic DNAsubtype:A1(2.7%),B(67.4%),C(0.1%),D(6.4%),G(15.2%),H(4.9%),J(3.3%)12316L,27I,41T,71D,83L,116A,120H,124V,148I,178T,180D
MN4673691408_TTM_40USA2016genomic DNAsubtype:A1(0.2%),B(89.0%),D(2.2%),G(0.6%),H(7.8%),J(0.1%)12316L,27I,41T,71D,83L,116A,120H,124V,148I,178T,200S
MN4673711408_TTM_43USA2016genomic DNAsubtype: B(100.0%)12316L,27I,41T,71D,83L,116A,120H,124V,148V,178T,200S
MN4673731408_TTM_45USA2016genomic DNAsubtype:A2(0.7%),A1(0.1%),B(96.1%),C(1.5%),D(1.5%)12316L,27I,72V,75D,83L,116A,120H,124V,148V,178T
MN4673741408_TTM_46USA2016genomic DNAsubtype: B(98.5%),D(1.5%)12316L,27I,71D,83L,116A,120H,124V,148I,180D
MN4673761408_TTM_49USA2016genomic DNAsubtype: CRF01_AE(0.1%),A1(6.5%),B(90.3%),F2(3.1%)12316L,27I,83L,116A,124V,148I,225S
MN4673771408_TTM_5USA2016genomic DNAsubtype: CRF01_AE(0.1%),A1(6.5%),B(90.3%),F2(3.1%)12316L,27I,83L,116A,124V,148I,225S
MN4673781408_TTM_50USA2016genomic DNAsubtype: B(100.0%)12316L,27I,75D,83L,116A,124V,148I,180D
MN4673791408_TTM_51USA2016genomic DNAsubtype: B(100.0%)12316L,27I,75D,83L,116A,120H,124V,148I,178T
MN4673801408_TTM_52USA2016genomic DNAsubtype:CRF01_AE(0.2%),A1(3.0%),B(86.3%),C(2.2%),F1(0.3%),F2(7.1%),G(0.1%),H(0.4%),J(0.3%)12316L,27I,75D,83L,116A,124V,148I,180D
MN4673872647_EM_12USA2016genomic DNAsubtype: B(100.0%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4673882647_EM_2USA2016genomic DNAsubtype: B(100.0%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4671832647_EM_23USA2016genomic DNAsubtype:B(78.0%),C(7.6%),F1(5.0%),F2(0.4%),G(8.1%),H(0.8%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4671872647_EM_3USA2016genomic DNAsubtype: B(82.2%),F2(17.8%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4671902647_EM_33USA2016genomic DNAsubtype: B(82.2%),F2(17.8%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4671932647_EM_38USA2016genomic DNAsubtype: B(100.0%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4671982647_EM_43USA2016genomic DNAsubtype: B(99.7%),C(0.3%),F1(0.0%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4671992647_EM_44USA2016genomic DNAsubtype: B(82.2%),F2(17.8%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672022647_EM_51USA2016genomic DNAsubtype:CRFA2(0.0%),01_AE(0.3%),A1(0.6%),B(91.7%),D(0.6%),F1(4.6%),F2(0.7%),K(1.4%)12316M,14P,79D,83M,120S,154K,171V,180D,208E
MN4672042647_EM_7USA2016genomic DNAsubtype: B(98.6%),K(1.4%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672072647_NV_12USA2016genomic DNAsubtype: CRFA2(0.1%),01_AE(8.5%),B(90.6%),J(0.8%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4673892647_NV_14USA2016genomic DNAsubtype: B(100.0%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672112647_NV_19USA2016genomic DNAsubtype: CRFA2(0.1%),01_AE(8.5%),B(90.6%),J(0.8%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672122647_NV_20USA2016genomic DNAsubtype: A1(2.5%),B(96.8%),F2(0.5%),J(0.2%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672132647_NV_22USA2016genomic DNAsubtype: B(82.8%),D(6.0%),H(11.3%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672152647_NV_25USA2016genomic DNAsubtype:CRF01_AE(0.4%),A1(9.4%),B(84.1%),F1(0.1%),F2(1.7%),G(0.4%),K(4.0%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672182647_NV_5USA2016genomic DNAsubtype: B(89.9%),F1(7.2%),G(2.0%),J(1.0%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672202647_NV_9USA2016genomic DNAsubtype: CRFA2(0.1%),01_AE(8.4%),B(90.7%),J(0.8%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672242647_TCM_12USA2016genomic DNAsubtype:CRFA2(0.7%),01_AE(10.9%),B(62.3%),C(1.6%),D(7.3%),F2(6.8%),G(6.4%),H(3.5%),K(0.4%)12316M,14P,18K,79D,83M,120S,154K,171V,180D
MN4673902647_TCM_17USA2016genomic DNAsubtype: B(100.0%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672282647_TCM_18USA2016genomic DNAsubtype:A1(6.7%),B(88.2%),C(0.3%),F1(1.4%),F2(2.8%),J(0.6%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672302647_TCM_2USA2016genomic DNAsubtype:CRF01_AE(2.4%),A1(2.7%),B(86.5%),C(0.5%),D(0.3%),F1(1.4%),F2(4.1%),G(0.0%),H(2.2%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672322647_TCM_23USA2016genomic DNAsubtype:CRF01_AE(2.2%),A1(4.9%),B(75.9%),D(0.5%),F1(2.9%),F2(0.5%),G(1.4%),J(11.6%),K(0.1%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672352647_TCM_29USA2016genomic DNAsubtype: B(100.0%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672382647_TCM_34USA2016genomic DNAsubtype: B(100.0%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672392647_TCM_35USA2016genomic DNAsubtype: A2(0.5%),B(96.6%),H(2.9%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4673912647_TCM_44USA2016genomic DNAsubtype: B(100.0%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672432647_TCM_45USA2016genomic DNAsubtype: B(100.0%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672442647_TCM_46USA2016genomic DNAsubtype: B(100.0%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672472647_TCM_51USA2016genomic DNAsubtype:A2(0.2%),A1(0.8%),B(85.3%),D(5.7%),F1(2.2%),F2(3.4%),G(2.3%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672512647_TCM_55USA2016genomic DNAsubtype:CRFA2(0.7%),01_AE(10.9%),B(62.3%),C(1.6%),D(7.3%),F2(6.8%),G(6.4%),H(3.5%),K(0.4%)12316M,14P,18K,79D,83M,120S,154K,171V,180D
MN4672522647_TCM_56USA2016genomic DNAsubtype: B(100.0%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672552647_TEMRA_20USA2016genomic DNAsubtype: B(82.2%),F2(17.8%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4673922647_TEMRA_33USA2016genomic DNAsubtype: B(100.0%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672582647_TTM_10USA2016genomic DNAsubtype: A2(1.2%),B(98.7%),F2(0.1%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672602647_TTM_12USA2016genomic DNAsubtype:A1(2.0%),B(95.9%),F1(1.6%),F2(0.2%),J(0.3%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672612647_TTM_13USA2016genomic DNAsubtype:B(88.5%),C(1.2%),F2(6.7%),H(0.2%),J(0.9%),K(2.5%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672642647_TTM_20USA2016genomic DNAsubtype: A2(2.7%),B(78.5%),D(18.8%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672662647_TTM_25USA2016genomic DNAsubtype:A1(1.0%),B(94.2%),C(1.4%),D(1.4%),G(1.7%),K(0.3%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672672647_TTM_26USA2016genomic DNAsubtype:CRF01_AE(6.8%),B(86.2%),C(1.3%),D(2.4%),F2(0.6%),H(0.4%),J(2.4%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672692647_TTM_29USA2016genomic DNAsubtype: B(98.6%),F2(1.4%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672712647_TTM_30USA2016genomic DNAsubtype: B(100.0%)12316M,14P,79D,83M,120S,123S,154K,171V,180D
MN4672722647_TTM_34USA2016genomic DNAsubtype: B(97.6%),H(2.2%),J(0.2%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672762647_TTM_41USA2016genomic DNAsubtype:A2(0.5%),A1(1.6%),B(93.3%),C(1.4%),F1(1.0%),F2(0.4%),J(0.8%),K(1.1%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4672802647_TTM_8USA2016genomic DNAsubtype: B(100.0%)12316M,14P,79D,83M,120S,154K,171V,180D
MN4670362664_TCM_1USA2016genomic DNAsubtype: B(100.0%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4670372664_TCM_14USA2016genomic DNAsubtype: B(100.0%)12316L,14P,41T,52*,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4670382664_TCM_15USA2016genomic DNAsubtype:CRF01_AE(0.1%),A1(8.7%),B(86.8%),D(1.8%),G(2.6%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4670392664_TCM_16USA2016genomic DNAsubtype: CRF01_AE(4.7%),B(93.8%),D(1.5%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4670402664_TCM_17USA2016genomic DNAsubtype: B(100.0%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4670412664_TCM_2USA2016genomic DNAsubtype: B(84.7%),D(11.3%),H(3.7%),K(0.3%)12316L,14P,41T,80*,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4670432664_TCM_21USA2016genomic DNAsubtype: B(100.0%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4670452664_TCM_24USA2016genomic DNAsubtype: B(96.7%),D(3.3%)12276L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R,227G
MN4670472664_TCM_28USA2016genomic DNAsubtype: B(100.0%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4670492664_TCM_30USA2016genomic DNAsubtype: B(100.0%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4670522664_TCM_33USA2016genomic DNAsubtype:CRFA2(0.1%),01_AE(2.1%),A1(2.1%),B(59.1%),C(10.3%),D(1.9%),F2(5.9%),G(11.2%),J(4.9%),K(2.4%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4670532664_TCM_34USA2016genomic DNAsubtype: B(98.4%),F1(0.1%),F2(0.0%),J(1.4%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4670552664_TCM_37USA2016genomic DNAsubtype:CRFA2(3.7%),01_AE(3.1%),A1(3.8%),B(65.7%),C(3.4%),D(5.8%),F2(10.4%),H(4.0%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4670562664_TCM_39USA2016genomic DNAsubtype: B(100.0%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4670602664_TCM_44USA2016genomic DNAsubtype:CRF01_AE(3.3%),B(74.1%),F1(11.2%),F2(0.7%),H(10.6%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4670612664_TCM_47USA2016genomic DNAsubtype: B(100.0%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4670632664_TCM_5USA2016genomic DNAsubtype: B(78.8%),C(19.5%),H(1.7%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4670642664_TCM_50USA2016genomic DNAsubtype: B(89.1%),F1(3.3%),G(1.0%),H(2.3%),K(4.2%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4670652664_TCM_51USA2016genomic DNAsubtype:CRF01_AE(3.7%),A1(8.7%),B(50.5%),C(0.8%),D(25.9%),F1(2.0%),H(3.7%),J(0.6%),K(4.2%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4670662664_TCM_52USA2016genomic DNAsubtype: B(100.0%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4670672664_TCM_6USA2016genomic DNAsubtype: B(100.0%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4671052664_TEM_12USA2016genomic DNAsubtype: B(100.0%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4671112664_TEM_19USA2016genomic DNAsubtype:A1(0.3%),B(85.7%),C(1.8%),D(3.5%),F1(2.3%),F2(2.9%),H(3.3%),K(0.2%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4671192664_TEM_29USA2016genomic DNAsubtype:A2(9.9%),A1(6.1%),B(53.5%),C(6.9%),D(3.9%),F1(15.4%),G(0.8%),H(3.6%)12216L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R,206G_SQTSSAFKAHDLQGSFRSQPLYKRKGGTGRVNLLPEKTRYS*SVGLPHTRLLP*LAELHTGARDQISTVLWMVLQASTNGSRSGRRGH*SREQPLVTPYEPAWNG*PRKRSIGVEV*QSPSISSYGQREASGVLQRLMTLSVC*LLTLSFLQGTFRWGLSREACDMGGTGEWRA,208D,210A,211Y,212K,213Q,214L,215L,216S,219T,221S
MN4671202664_TEM_30USA2016genomic DNAsubtype:A2(9.9%),A1(6.1%),B(53.5%),C(6.9%),D(3.9%),F1(15.4%),G(0.8%),H(3.6%)12216L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R,206G_SQTSSAFKAHDLQGSFRSQPLYKRKGGTGRVNLLPEKTRYS*SVGLPHTRLLP*LAELHTGARDQISTVLWMVLQASTNGSRSGRRGH*SREQPLVTPYEPAWNG*PRKRSIGVEV*QSPSISSYGQREASGVLQRLMTLSVC*LLTLSFLQGTFRWGLSREACDMGGTGEWRA,208D,210A,211Y,212K,213Q,214L,215L,216S,219T,221S
MN4671212664_TEM_31USA2016genomic DNAsubtype:A2(9.9%),A1(6.1%),B(53.5%),C(6.9%),D(3.9%),F1(15.4%),G(0.8%),H(3.6%)12216L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R,206G_SQTSSAFKAHDLQGSFRSQPLYKRKGGTGRVNLLPEKTRYS*SVGLPHTRLLP*LAELHTGARDQISTVLWMVLQASTNGSRSGRRGH*SREQPLVTPYEPAWNG*PRKRSIGVEV*QSPSISSYGQREASGVLQRLMTLSVC*LLTLSFLQGTFRWGLSREACDMGGTGEWRA,208D,210A,211Y,212K,213Q,214L,215L,216S,219T,221S
MN4671302664_TEM_40USA2016genomic DNAsubtype: B(100.0%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4671362664_TEM_47USA2016genomic DNAsubtype: B(89.6%),C(0.3%),H(8.6%),J(1.5%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4671492664_TEM_7USA2016genomic DNAsubtype:CRF01_AE(1.1%),A1(0.2%),B(96.4%),D(1.0%),K(1.2%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,103N,116A,180D,203R
MN4670712664_TEMRA_10USA2016genomic DNAsubtype: B(100.0%)12316L,14P,41T,70Q,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4670802664_TEMRA_23USA2016genomic DNAsubtype: B(97.8%),C(0.4%),F1(1.4%),F2(0.3%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4670862664_TEMRA_30USA2016genomic DNAsubtype: B(100.0%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4670902664_TEMRA_38USA2016genomic DNAsubtype:A1(3.5%),B(81.6%),C(4.3%),D(4.3%),F1(0.9%),F2(4.2%),G(0.2%),H(1.0%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4670982664_TEMRA_5USA2016genomic DNAsubtype:A1(2.4%),B(84.6%),C(0.7%),D(5.9%),F1(4.2%),F2(2.2%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4671002664_TEMRA_6USA2016genomic DNAsubtype: B(100.0%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4671552664_TN_14USA2016genomic DNAsubtype: B(100.0%)12316L,14P,18K,22T,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4671602664_TTM_1USA2016genomic DNAsubtype:CRF01_AE(1.8%),A1(2.9%),B(88.3%),C(3.1%),F1(2.3%),F2(0.0%),G(0.7%),J(0.8%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4671622664_TTM_16USA2016genomic DNAsubtype: B(97.7%),F2(2.3%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4671642664_TTM_18USA2016genomic DNAsubtype: B(100.0%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4671652664_TTM_21USA2016genomic DNAsubtype:CRF01_AE(0.2%),B(85.8%),D(0.2%),F1(0.1%),F2(7.2%),H(0.7%),J(2.7%),K(3.0%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4671672664_TTM_23USA2016genomic DNAsubtype: B(100.0%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4671682664_TTM_25USA2016genomic DNAsubtype: B(92.8%),C(7.2%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4671692664_TTM_27USA2016genomic DNAsubtype:CRFA2(1.5%),01_AE(0.9%),A1(4.8%),B(88.8%),F2(0.0%),K(3.9%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,183K,203R,214R
MN4673862664_TTM_30USA2016genomic DNAsubtype: B(100.0%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4671712664_TTM_31USA2016genomic DNAsubtype: B(100.0%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4671722664_TTM_35USA2016genomic DNAsubtype: B(100.0%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,130*,161L,180D,203R
MN4671742664_TTM_37USA2016genomic DNAsubtype:B(90.1%),C(2.7%),D(4.4%),F1(1.4%),G(0.9%),H(0.6%)12316L,14P,41T,83L,86A,87Q,91H,92P,98D,116A,180D,203R
MN4669643632_TCM_10USA2016genomic DNAsubtype:A2(0.8%),A1(2.2%),B(72.4%),C(3.8%),F1(0.3%),F2(2.5%),G(10.8%),H(4.4%),J(0.8%),K(2.1%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4669653632_TCM_12USA2016genomic DNAsubtype: B(100.0%)12316L,83L,86A,87Q,91V,96I,116A,120H,128D,148S,154K,170R,194S,208G
MN4669663632_TCM_15USA2016genomic DNAsubtype: CRF01_AE(2.6%),B(82.4%),F2(4.8%),K(10.3%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4673963632_TCM_18USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4673973632_TCM_20USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4669713632_TCM_6USA2016genomic DNAsubtype: A1(0.9%),B(92.7%),F2(1.5%),G(4.9%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4669723632_TCM_8USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4669773632_TEM_11USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4669793632_TEM_14USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4669803632_TEM_15USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4669843632_TEM_2USA2016genomic DNAsubtype: B(100.0%)12316L,83L,86A,87Q,91V,96I,116A,120H,128D,148S,154K,170R,194S,208G
MN4669853632_TEM_20USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4669863632_TEM_21USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4669893632_TEM_25USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4669903632_TEM_26USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4669913632_TEM_27USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4669923632_TEM_3USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4669953632_TEM_32USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4669963632_TEM_33USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4669973632_TEM_34USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4669983632_TEM_35USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4669993632_TEM_37USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4670013632_TEM_4USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4670023632_TEM_40USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4670033632_TEM_5USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4670043632_TEM_6USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4670053632_TEM_7USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4670063632_TEM_8USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4670073632_TEM_9USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4669733632_TEMRA_1USA2016genomic DNAsubtype: A1(3.5%),B(96.5%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4669743632_TEMRA_2USA2016genomic DNAsubtype:CRF01_AE(4.2%),A1(3.1%),B(79.0%),C(4.5%),F1(6.5%),F2(1.5%),G(0.1%),J(1.0%)12316L,83L,86A,87Q,91V,96I,116A,120H,128D,148S,154K,170R,194S,208G
MN4669753632_TEMRA_3USA2016genomic DNAsubtype:CRF01_AE(0.5%),A1(5.4%),B(86.4%),C(7.7%),F2(0.1%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4670113632_TN_5USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4673833632_TN_8USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4670133632_TSCM_1USA2016genomic DNAsubtype:A2(7.1%),A1(1.1%),B(85.2%),C(1.2%),D(0.5%),F1(0.7%),F2(1.5%),G(0.7%),K(2.1%)12316L,15L,83L,86A,87Q,91V,96I,116A,120H,128D,148S,154K,170R,194S,208G
MN4670143632_TTM_12USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4670153632_TTM_13USA2016genomic DNAsubtype: B(100.0%)12316L,26E,83L,86A,87Q,91V,96I,116A,120H,128D,148S,154K,170R,194S,208G
MN4670173632_TTM_20USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4670203632_TTM_24USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4673843632_TTM_25USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4670223632_TTM_3USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4670233632_TTM_31USA2016genomic DNAsubtype: CRF01_AE(0.2%),B(99.8%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4670243632_TTM_32USA2016genomic DNAsubtype: A1(5.1%),B(94.9%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4670253632_TTM_33USA2016genomic DNAsubtype: B(86.2%),D(12.3%),K(1.5%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4670263632_TTM_34USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4670273632_TTM_35USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4670283632_TTM_38USA2016genomic DNAsubtype: B(100.0%)12316L,83L,86A,87Q,91V,96I,116A,120H,128D,148S,154K,170R,194S,208G
MN4670293632_TTM_39USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,128D,148S,154K,170R,194S,208G
MN4673853632_TTM_4USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4670313632_TTM_42USA2016genomic DNAsubtype: B(98.0%),J(2.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4670343632_TTM_8USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G
MN4670353632_TTM_9USA2016genomic DNAsubtype: B(100.0%)12316L,15L,83L,87Q,91V,96I,116A,120H,148S,154K,170R,194S,208G

Database

Resources

Team