Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Campbell (2016)	Viral linkage in HIV-1 seroconverters and their partners in an HIV-1 prevention clinical trial	PLoS ONE 6 (3), E16986 (2011)	1.94e-156	237	151	Uncertain	Plasma	Molecular clones; SGS; NGS	Molecular epidemiology

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Accession	IsolateName	Country	MolType	Source	FirstAA	LastAA	MutList
HQ423772	A0147gconB19	Tanzania	genomic RNA	plasma from female local control A0147	1	213	6A,12L,14N,15L,27I,54M,58I,71D,83L,92P,111P,115L,116Q,120G,128D,148V,154K,169F,178T,180D,191T,200P,203R,207A,208G
HQ423771	A0147gconB19s11	Tanzania	genomic RNA	plasma from female local control A0147	1	213	6A,12L,14N,15L,27I,54M,58I,71D,83L,92P,111P,115L,116Q,120G,128D,148V,154K,169F,178T,180D,191T,200P,203R,207V,208G
HQ423795	A0280gconB19	Zambia	genomic RNA	plasma from female local control A0280	1	201	6L,41I,71D,83L,116A,120S,129L,132K,136M,148V,154K,169F,177S,187D
HQ423693	A0311_gconB16s1	South Africa	genomic RNA	plasma from female local control A0311	1	215	6L,27I,41T,71D,75D,83L,91V,116A,120S,128D,148V,169F,178T,180D,187D,203R,208G
HQ423979	A0524_gconB20s1	Tanzania	genomic RNA	plasma from female local control A0524	1	213	6L,14N,15M,27I,36I,41T,71D,83L,87Q,91V,96L,116A,120H,128D,136M,148V,154K,169F,178T,187D,200S,203R,208G
HQ423966	A0585_gconB20s1	South Africa	genomic RNA	plasma from female local control A0585	1	213	6L,14P,41T,54C,58A,71D,113D,116A,118I,120G,123A,135V,148V,154K,169F,170R,178T,180D,187D,203R,208G
HQ423969	A0611_gconB20	Tanzania	genomic RNA	plasma from male local control A0611	1	213	6L,27I,83L,91A,110S,120S,148V,180D,205M,208G
HQ423937	A0823_gconB20s1	Tanzania	genomic RNA	plasma from male local control A0823	1	213	6A,14N,15L,27I,36I,45D,50Y,58I,71D,83L,92P,111P,116Q,120S,128D,148V,154K,169F,171V,178T,183G,200S,207T,208G
HQ423871	B0054GCONB16	South Africa	genomic RNA	plasma from female local control B0054	1	213	6A,14P,27I,41T,71D,83L,96L,110N,116A,128D,131R,148V,154K,169F,171V,178T,180D,203R,204G,207Q,208G,210S
HQ423901	B0201_Gcon_BKG20	Zambia	genomic RNA	plasma from male local control B0201	1	213	6L,27I,41T,45D,50S,54S,59I,71D,83L,91V,116A,128D,148V,154K,169F,178T,180D,200N,203R,208G,210S
HQ423900	B0262_Gcon_Bkg20	South Africa	genomic RNA	plasma from female local control B0262	1	213	6L,27I,41T,71D,83L,110N,116A,120G,124V,128D,148V,169F,178T,180D,187D,203R,208G
HQ423897	B0437_Gcon_Bkg20	Tanzania	genomic RNA	plasma from male local control B0437	1	215	6A,14N,15L,27I,58I,71D,83M,92P,96I,111P,115L,116Q,120G,148V,169F,171V,183G,187D,191I,207A,208G
HQ423896	B0815_Gcon_Bkg20	Zambia	genomic RNA	plasma from female local control B0815	1	211	6L,15L,41T,68I,71D,83T,96I,110N,116A,120A,135V,148V,154K,169F,170R,180D,187D,203R,208G,210S,211I
HQ423902	B0822_Gcon_Bkg20__	Zambia	genomic RNA	plasma from female local control B0822	1	215	6L,14T,15L,27I,41T,50V,71D,83L,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
HQ423899	B0849_Gcon_Bkg20__	South Africa	genomic RNA	plasma from female local control B0849	1	213	6L,14P,27I,41T,71D,83L,91V,116A,120S,128D,148V,169F,178T,187D,203R,204G,208G
HQ423808	BKG010gconB27	Kenya	genomic RNA	plasma from female local controlBKG010	1	202	6A,11I,12Y,14S,15L,27I,36I,48P,83L,91N,120S,148V,180D
HQ423810	BKG012gconB27	Kenya	genomic RNA	plasma from female local controlBKG012	1	217	6A,11I,14S,15L,27I,31G,54M,58I,71D,83I,92P,110N,111I,120S,124V,148V,154K,169F,178T,180D,200S,207T,208G
HQ424010	BKG02_gcons1	Kenya	genomic RNA	plasma from female local control BKG02	1	215	2V,6L,27I,50S,54M,71D,83M,91A,120S,128D,148V,154K,177G,180D,208G
HQ423971	BKG03_gcons1	Kenya	genomic RNA	plasma from female local control BKG03	1	201	6A,10W,33N,83L,87Q,90AP,96I,110N,116A,120S,148V,187D,200S
HQ423960	BKG06_gcons1	Botswana	genomic RNA	plasma from female local control BKG06	1	213	6L,27I,41T,71D,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,207Q,208G
HQ423847	PP101B_B0812gconB13	Kenya	genomic RNA	plasma from female seroconvertingpartner PP101B	1	217	6A,11I,14P,15M,27I,54M,58I,71D,83L,91V,110N,111V,116A,120S,128D,148V,154K,163E,169F,171V,180D,183G,187D,203R,207A,208G
HQ423876	PP102A_B0158GCONB16	Kenya	genomic RNA	plasma from female index partnerPP102A	1	213	6A,11I,14N,15L,27I,31G,41T,49S,50H,58I,71D,83T,87Q,92P,96I,111I,115V,116T,120S,148V,169F,178T,180D,203R,204G,207T,208G
HQ423695	PP102B_A0643_gconB16s1	Kenya	genomic RNA	plasma from male seroconverting partnerPP102B	1	213	6A,11I,14N,15L,27I,31G,41T,49S,50H,58I,71D,83T,87Q,92P,96I,111I,115V,116T,120S,148V,169F,178T,180D,203R,204G,207T,208G
HQ423875	PP103A_B0248GCONB16	Uganda	genomic RNA	plasma from male index partner PP103A	1	213	6A,11S,15L,27I,30R,31G,54M,58I,71D,92P,111I,120S,128D,129L,148V,154K,169F,178T,183G,191I,200S,207S,208G,210S
HQ423999	PP103B_A0661_gconB16s1	Uganda	genomic RNA	plasma from female seroconvertingpartner PP103B	1	216	6L,15L,27I,83M,116A,120S,148V,180D,208G
HQ423873	PP104A_B0778GCONB16	Uganda	genomic RNA	plasma from male index partner PP104A	1	213	6L,27I,83L,96L,116Q,120G,122N,148V,171V,180D
HQ423932	PP104B_A0910_gconB16s1	Uganda	genomic RNA	plasma from female seroconvertingpartner PP104B	1	217	6L,27I,83L,96L,116Q,120G,122N,126PRST,127R,128R,129K,129K_I,131NY,134I_I,135AT,136Y,141Y,142NS,144IM,146E,148S,150AS,150AS_S,152DY,154Q,156GR,158KQ,159N,160PT,161S,162IR,168LV,169I,170N,171V,172FLV,173I,178H,180D,182V,184S,188N,189FILM,190LV,192ELQV,193HN,195D,197H,199S,203I,205LV,206,211S,212,217E
HQ423874	PP105A_B0114GCONB16	Uganda	genomic RNA	plasma from male index partner PP105A	1	213	6A,11I,14P,15F,16T,27I,30R,36I,49S,50H,54M,58V,71D,83T,91V,107S,111P,116A,120G,128D,148V,154K,169F,171A,178T,187D,200AT,204G,207T,208G,210S
HQ423967	PP105B_A0580_gconB16s1	Uganda	genomic RNA	plasma from female seroconvertingpartner PP105B	1	215	6A,11I,14P,15F,16T,27I,30R,36I,49S,50H,54M,58V,71D,83T,91V,107S,111P,116A,120G,128D,148V,154K,169F,171A,178T,187D,200A,204G,207T,208G,210S
HQ423881	PP106A_B0356GCONB16	Botswana	genomic RNA	plasma from female index partnerPP106A	1	213	6L,27I,41T,43S,71D,83L,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G
HQ423987	PP106B_A0554_gconB15s1	Botswana	genomic RNA	plasma from male seroconverting partnerPP106B	1	215	6H,27I,41T,71D,83L,91V,116A,120G,122Q,148V,154K,160S,169F,178T,180D,187D,203R,208G
HQ423872	PP107A_B0339GCONB16	South Africa	genomic RNA	plasma from female index partnerPP107A	1	213	6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,187D,191I,207Q,208G,210S
HQ424002	PP107B_A0024_gconB16s1	South Africa	genomic RNA	plasma from male seroconverting partnerPP107B	1	213	6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,187D,191I,207Q,208G,210S
HQ423751	PP108A_B0647gconB21	Kenya	genomic RNA	plasma from male index partner PP108A	1	213	6L,14S,15L,27I,83L,148V,154K,180D
HQ423864	PP108B_A0470gconB21	Kenya	genomic RNA	plasma from female seroconvertingpartner PP108B	1	213	6L,14S,15L,27I,83L,148V,180D
HQ423763	PP109A_B0118gconB21	Kenya	genomic RNA	plasma from female index partnerPP109A	1	213	6A,14S,15L,27I,29D,54M,58I,71D,83X,86IV,87PR,88AV,91L,92P,96L,111ILPT,116A,120G,128D,148V,153IV,154K,169F,171I,180D,187D,200S,203R,208G
HQ423863	PP109B_A0916gconB21	Kenya	genomic RNA	plasma from male seroconverting partnerPP109B	1	218	6A,14S,15L,27I,29D,54M,58I,71D,83T,86I,87P,88V,91L,92P,96L,111I,116A,120G,128D,148V,154K,169F,171I,180D,187D,191T,200S,203R,208G
HQ423746	PP110A_B0818gconB21	Uganda	genomic RNA	plasma from female index partnerPP110A	1	213	6A,15V,27I,54M,58I,71D,83L,86I,87P,96I,111I,115~,116~,117~,118~,119~,120G,128D,148V,154K,169F,171A,178T,183G,199R,200A,203R,207T,208G
HQ423866	PP110B_A0335gconB21	Uganda	genomic RNA	plasma from male seroconverting partnerPP110B	1	212	6A,11I,14P,15L,30R,31G,36IV,50G,54M,58I,83L,87Q,91V,92P,96L,111S,120S,128D,148V,154K,169F,178T,183G,200A,203R,206Q,207GR,209T,210L,211*E
HQ423750	PP111A_B0691gconB21	Uganda	genomic RNA	plasma from female index partnerPP111A	1	213	6L,27I,41T,54V,75D,83L,116AT,120S,128D,135V,148V,154K,180D
HQ423860	PP111B_A0058gconB21	Uganda	genomic RNA	plasma from male seroconverting partnerPP111B	1	214	6A,11I,15V,27I,54M,58I,71D,83L,87Q,92P,96I,111I,116A,120S,128D,148V,154K,169F,171A,178T,183G,200S,203R,207T,208G
HQ423765	PP112A_B0063gconB21	Uganda	genomic RNA	plasma from male index partner PP112A	1	213	6A,12Y,14S,15V,27I,54M,58I,71D,83L,111P,116A,120G,121T,128D,148V,169F,171C,178T,180D,200S,203R,207T,208G
HQ423865	PP112B_A0627gconB21	Uganda	genomic RNA	plasma from female seroconvertingpartner PP112B	1	221	6T,12Y,14S,15V,27I,54M,58I,71D,83L,111P,116A,120G,121T,128D,148V,169F,171C,178T,180D,199N,200S,203R,207T,208G,221S
HQ423755	PP113A_B0494gconB21	Uganda	genomic RNA	plasma from male index partner PP113A	1	213	6L,19ST,27I,83L,91P,110N,116A,120S,124V,148V,183H,208G
HQ423754	PP114A_B0550gconB21	Uganda	genomic RNA	plasma from female index partnerPP114A	1	213	6L,15L,27I,41T,83L,91V,148V,154K,180D
HQ423753	PP114A_B0550gconB21s2	Uganda	genomic RNA	plasma from female index partnerPP114A	1	213	6L,15L,27I,28EK,41T,83L,91V,120NS,148V,154K,178ST,180DE
HQ423862	PP114B_A0088gconB21	Uganda	genomic RNA	plasma from male seroconverting partnerPP114B	1	214	6L,15L,27I,41T,83L,87Q,91V,96L,148V,154K,180D
HQ423821	PP115A_A0429gconB22	Uganda	genomic RNA	plasma from male index partner PP115A	1	214	6A,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,115L,116Q,120G,128D,148V,154K,169F,171A,178T,180D,200S,203R,207A,208G
HQ423945	PP115B_B0590_gconB22s1	Uganda	genomic RNA	plasma from female seroconvertingpartner PP115B	1	211	6A,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,115L,116Q,120G,128D,148V,154K,169F,171A,178T,180D,200S,203R,207A,208G
HQ423823	PP116A_A0352gconB22	Kenya	genomic RNA	plasma from female index partnerPP116A	1	213	6A,11T,14T,15L,27I,31G,48A,54M,58I,71D,83I,91V,111I,120S,148V,154K,162K,169F,178T,180D,200S,203R,207A,208G
HQ423950	PP116B_B0271_gconB22s1	Kenya	genomic RNA	plasma from male seroconverting partnerPP116B	1	213	6A,11T,13T,15L,27I,54M,58I,68I,71D,83L,92P,111P,120S,128N,132Q,148V,154K,169F,178T,183G,200S,203R,207A,208G
HQ423820	PP117A_A0061gconB22	Kenya	genomic RNA	plasma from male index partner PP117A	1	217	6A,27I,41A,68I,83I,92P,120S,128D,129L,132K,148V,169F,171C,178T,187D,208G,210N
HQ423952	PP117B_B0016_gconB22s1	Kenya	genomic RNA	plasma from female seroconvertingpartner PP117B	1	206	6A,14P,27I,41T,54A,58I,71D,72A,87Q,92P,96I,98D,116T,148V,169F,178T,187D,203R,206D
HQ423824	PP118A_A0091gconB22	South Africa	genomic RNA	plasma from female index partnerPP118A	1	213	6L,15L,27I,41T,71D,83L,115V,116A,118T,120G,148V,154K,169F,178T,203R,208G,210S
HQ423951	PP118B_B0107_gconB22s1	South Africa	genomic RNA	plasma from male seroconverting partnerPP118B	1	213	6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G
HQ423829	PP119A_A0918gconB22	South Africa	genomic RNA	plasma from male index partner PP119A	1	213	6L,27I,41T,50S,54S,71D,83L,91V,116A,128D,148V,169F,171A,178T,180D,187D,207S,208G
HQ423946	PP119B_B0565_gconB22s1	South Africa	genomic RNA	plasma from female seroconvertingpartner PP119B	1	211	6L,27I,41T,50S,54S,71D,83L,91V,116A,128D,132K,148V,169F,171A,178T,187D,207T,208G
HQ423800	PP120A_A0272gconB22	Kenya	genomic RNA	plasma from male index partner PP120A	1	221	6A,11I,12L,14T,15L,27I,54M,58I,71D,83L,92P,111P,115L,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G,221S
HQ423948	PP120B_B0479_gconB22s1	Kenya	genomic RNA	plasma from female seroconvertingpartner PP120B	1	212	6A,11I,12L,14T,15L,27I,54M,58I,71D,83L,92P,111P,115L,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
HQ423766	PP121A_B0050gconB23	Uganda	genomic RNA	plasma from female index partnerPP121A	1	213	6A,13N,14P,15L,27I,54M,58V,71D,83L,86L,87P,98D,111P,120G,128D,131R,148V,152E,154K,169F,178T,187D,200S,207T,208G
HQ423857	PP121B_A0111gconB23	Uganda	genomic RNA	plasma from male seroconverting partnerPP121B	1	216	6A,11I,15V,27I,54M,58I,71D,83L,87Q,92P,96I,111I,120A,128D,148V,153V,154K,169F,171I,178T,183G,200S,203R,208G,210S
HQ423858	PP122B_A0269gconB23	Kenya	genomic RNA	plasma from male seroconverting partnerPP122B	1	215	6A,33N,54S,58I,71D,83I,86Q,87Q,92P,96I,116A,120S,148V,169F,183G,187D,203R,208G,210S
HQ423739	PP123A_B0948gconB23	Kenya	genomic RNA	plasma from male index partner PP123A	1	213	6A,14T,15L,27I,50G,54M,58V,71D,83L,86A,87Q,92P,96L,111P,120S,128D,148V,154K,169F,177C,178T,183G,187D,200S,207AT,208G
HQ423758	PP126A_B0460gconB23_bad	Kenya	genomic RNA	plasma from male index partner PP126A	1	213	4R,6L,14T,27I,41T,59I,71D,83L,87Q,91V,96I,98D,116D,120R,128D,136I,148V,154K,169F,178T,180D,187D,208G
HQ423757	PP126A_B0460gconB23s2	Kenya	genomic RNA	plasma from male index partner PP126A	1	213	4R,6L,14T,27I,41T,59I,71D,83L,87Q,91V,96I,98D,116D,120R,128D,136I,148V,154K,169F,178T,180D,187D,208G
HQ423756	PP126A_B0460gconB23s3	Kenya	genomic RNA	plasma from male index partner PP126A	1	213	4R,6L,14T,27I,41T,59I,71D,83L,87Q,91V,96I,98D,116D,120R,128D,136I,148V,154K,169F,178T,180D,187D,208G
HQ423859	PP126B_A0636gconB23	Kenya	genomic RNA	plasma from female seroconvertingpartner PP126B	1	216	4R,6L,10L,14T,27I,41T,71D,83L,87Q,91V,96I,98D,116D,120R,128D,136I,148V,154K,169F,178T,180D,187D,208G
HQ423941	PP128A_A0768_gconB24s1	Kenya	genomic RNA	plasma from male index partner PP128A	1	213	6A,12L,14T,15L,27I,41A,54M,56M,58I,71D,83M,87Q,92P,111P,115L,116A,120S,124V,128D,148V,154K,169F,178T,180D,200P,203R,207S,208G
HQ423835	PP128B_B0770gconB24	Kenya	genomic RNA	plasma from female seroconvertingpartner PP128B	1	212	6A,11T,12Y,14S,15L,27I,54M,58V,71D,82K,83L,92P,98D,111T,120G,148V,154K,169F,178T,200S,203R,208G
HQ423976	PP129A_A0487_gconB24s1	Kenya	genomic RNA	plasma from male index partner PP129A	1	212	6L,14P,15L,27I,41T,71D,83L,91V,110N,148V,154K,180D,184*
HQ423830	PP129B_B0552gconB24	Kenya	genomic RNA	plasma from female seroconvertingpartner PP129B	1	214	6L,14P,15L,27I,41T,71D,83L,110N,148V,154K,180D,183S
HQ424003	PP130A_A0045_gconB25s1	Kenya	genomic RNA	plasma from male index partner PP130A	1	213	6P,11I,14P,15L,27I,30R,31G,48I,54M,58I,71D,83I,92P,111LP,120S,128D,148V,154K,169F,178T,183G,191I,200S,203R,207S,208G
HQ423984	PP131A_A0206_gconB25s1	Uganda	genomic RNA	plasma from male index partner PP131A	1	216	6A,11I,14S,15L,27I,54M,58I,71D,83L,96I,110N,111I,116A,128D,148V,154K,160S,169F,171A,178T,180D,191I,200S,208G,216R
HQ423834	PP131B_B0777gconB25	Uganda	genomic RNA	plasma from female seroconvertingpartner PP131B	1	215	6A,11I,14S,15L,27I,54M,58I,71D,83L,96I,110N,111I,116A,128D,148V,154K,160S,169F,171A,178T,180D,191I,200S,208G
HQ423955	PP132A_A0705_gconB25s1	Kenya	genomic RNA	plasma from female index partnerPP132A	1	216	5S,6A,11I,14S,15L,27I,30R,31G,50G,54M,58I,71D,83L,91V,111P,116A,118I,120G,128D,148V,154K,169F,177G,178T,180D,200S,203R,207A,208G
HQ423690	PP132A_A0705_gconB25s2	Kenya	genomic RNA	plasma from female index partnerPP132A	1	215	5S,6A,11I,14S,15L,27I,30R,31G,50G,54M,58I,71D,83L,91V,111P,116A,118I,120G,128D,148V,154K,169F,177G,178T,180D,200S,203R,207A,208G
HQ423833	PP132B_B0784gconsB25	Kenya	genomic RNA	plasma from male seroconverting partnerPP132B	1	214	6A,14T,15L,27I,54M,58V,71D,83L,92P,111P,120G,128D,148V,154K,169F,178T,200A,203R,208G,210S
HQ423996	PP133A_A0234_gconB25s1	Kenya	genomic RNA	plasma from female index partnerPP133A	1	213	6A,11I,14P,15L,27I,30R,31G,54M,58I,71D,83L,92P,111P,120S,128D,129L,148V,154K,169F,178T,180D,191T,200S,203R,208G
HQ423978	PP134A_A0323_gconB25s1	Kenya	genomic RNA	plasma from female index partnerPP134A	1	213	6A,11A,15V,27I,31G,58I,71D,79D,83L,87Q,92P,96L,111T,120G,128D,148V,154K,169F,178T,183G,200S,203R,207T,208G
HQ423836	PP134B_B0671gconB25r1	Kenya	genomic RNA	plasma from male seroconverting partnerPP134B	1	217	6A,11T,14S,15V,27I,31G,58I,71D,79D,83L,87Q,92P,96L,111I,120G,128D,148V,154K,169F,171I,178T,183G,200S,203R,207T,208G
HQ423806	PP136A_A0733gconB26	Kenya	genomic RNA	plasma from male index partner PP136A	1	217	6A,14S,15L,27I,54M,58I,71D,92P,111P,120S,128D,148V,154K,169F,178T,180D,191I,203R,208G
HQ423938	PP136B_A0798_gconB26s1	Kenya	genomic RNA	plasma from female seroconvertingpartner PP136B	1	214	6A,14S,15L,27I,54M,58I,71D,92P,111P,120S,128D,148V,154K,169F,178T,180D,191I,203R,208G
HQ423986	PP13A_A0367_gconBr2s1	Zambia	genomic RNA	plasma from male index partner PP13A	1	213	6L,14P,15L,27I,41T,71D,83L,110N,112A,116A,120G,124V,128D,148V,154K,169F,178T,180D,203R,208G,210S
HQ423861	PP13B_A0767gconB21	Zambia	genomic RNA	plasma from female seroconvertingpartner PP13B	1	216	6L,27I,83L,91P,110N,116A,120S,124V,148V,183H,208G
HQ423762	PP13B_B0215gconRetest	Zambia	genomic RNA	plasma from female seroconvertingpartner PP13B	1	213	6L,14S,15L,27I,36I,41T,71D,83L,110N,112A,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
HQ423696	PP14A_A0097gconB4s3	Zambia	genomic RNA	plasma from male index partner PP14A	1	213	6L,27I,41T,50G,59I,71D,83L,111T,116A,120G,124V,128D,135V,148V,169F,178T,203R,208G,210S
JF294996	PP16A-A0783-gconBr1	Zambia	genomic RNA	plasma from female index partner PP16A	1	214	6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,187D,203R,208G,210S
JF294995	PP16B-B0423-retest_gag	Zambia	genomic RNA	plasma from male seroconverting partnerPP16B	1	216	6L,27I,31G,33N,41T,71D,83L,116A,135V,148V,154K,169F,177S,187D,203R,207S,208G
HQ423785	PP17A_A0475gconRetest	Zambia	genomic RNA	plasma from female index partner PP17A	1	213	6L,14P,27I,41T,71D,83L,91V,96I,110S,116T,120S,128D,148V,169F,178T,187D,203R,208G,210S
HQ423963	PP17B_B0947_gconBr2s1	Zambia	genomic RNA	plasma from male seroconverting partnerPP17B	1	213	6L,14P,27I,41T,71D,83L,91V,96I,110N,116T,120S,128D,148V,169F,178T,187D,203R,208G,210S
HQ423701	PP18B_8A04gconB3	Zambia	genomic RNA	plasma from male seroconverting partnerPP18B	1	213	6F,14P,15L,27I,31G,33N,41T,71D,83L,87Q,96I,110N,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
HQ423905	PP18B_B0509_Gcon_Br3	Zambia	genomic RNA	plasma from male seroconverting partnerPP18B	1	215	6F,14P,15L,27I,31G,33N,41T,71D,83L,87Q,96I,103G,110N,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
HQ423718	PP22A_A0586gconRetest	Zambia	genomic RNA	plasma from female index partner PP22A	1	213	6L,15L,27I,41T,71D,83L,91N,92P,116A,120S,148V,154K,169F,171A,178T,180D,187D,203R,207Q,208G
HQ423949	PP22B_B0389_gconBr2s1	Zambia	genomic RNA	plasma from male seroconverting partnerPP22B	1	213	6L,15L,27I,41T,71D,83L,91N,92P,116A,120S,148V,154K,169F,171A,178T,180D,187D,207S,208G
HQ423759	PP24B_B0421gconB9	Zambia	genomic RNA	plasma from female seroconvertingpartner PP24B	1	213	6L,14S,27I,41T,71D,83L,91V,107S,116A,120S,124V,128D,136M,148V,154K,169F,171A,178T,180D,187D,203R,204G,208G
HQ423974	PP25A_A0413_gconBr1s1	Zambia	genomic RNA	plasma from male index partner PP25A	1	204	6L,14P,15L,27I,41T,71D,77V,91V,110N,116A,120S,128D,148V,169F,178T,187D,203R
HQ423704	PP26B_10000041gcon_forwardonly	Uganda	genomic RNA	plasma from male seroconverting partnerPP26B	1	213	4R,6L,10L,15L,16T,41T,50S,54A,83L,91V,116D,120S,148V,154K,180D,210S
HQ423747	PP29B_B0799gconB9	Uganda	genomic RNA	plasma from male seroconverting partnerPP29B	1	213	6L,15M,27I,41A,50S,54S,83L,116A,120G,148V,180D,183T,208S,210S
HQ423956	PP32A_A0465_gconBr1s1_bad	Uganda	genomic RNA	plasma from male index partner PP32A	1	213	6L,27I,83L,148V,180D
HQ423733	PP32A_A0521gconRetest	Uganda	genomic RNA	plasma from male index partner PP32A	1	213	6L,15L,27I,41T,83L,87Q,91V,96L,148V,154K,180D
HQ423734	PP32A_A0521gconRetests2	Uganda	genomic RNA	plasma from male index partner PP32A	1	213	6L,15L,27I,41T,83L,87Q,91V,96L,148V,154K,180D
HQ423732	PP32A_A0521gsm10Retest	Uganda	genomic RNA	plasma from male index partner PP32A	1	213	6L,27I,83L,148V,180D
HQ423731	PP32A_A0521gsm14Retest	Uganda	genomic RNA	plasma from male index partner PP32A	1	213	6L,27I,83L,148V,180D
HQ423730	PP32A_A0521gsm20Retest	Uganda	genomic RNA	plasma from male index partner PP32A	1	213	6L,27I,83L,148V
HQ423729	PP32A_A0521gsm44Retest	Uganda	genomic RNA	plasma from male index partner PP32A	1	213	6L,27I,83L,148V,180D
HQ423728	PP32A_A0521gsm56Retest	Uganda	genomic RNA	plasma from male index partner PP32A	1	213	6L,27I,83L,148V,180D
HQ423727	PP32A_A0521gsm58Retest	Uganda	genomic RNA	plasma from male index partner PP32A	1	213	6L,27I,83L,148V
HQ423726	PP32A_A0521gsm68Retest	Uganda	genomic RNA	plasma from male index partner PP32A	1	213	6L,27I,83L,148V,180D
HQ423725	PP32A_A0521gsm73Retest	Uganda	genomic RNA	plasma from male index partner PP32A	1	213	6L,27I,83L,148V,180D
HQ423724	PP32A_A0521gsm75Retest	Uganda	genomic RNA	plasma from male index partner PP32A	1	213	6L,27I,83L,148V,180D
HQ423723	PP32A_A0521gsm77Retest	Uganda	genomic RNA	plasma from male index partner PP32A	1	213	6L,27I,83L,148V
HQ423722	PP32A_A0521gsm78Retest	Uganda	genomic RNA	plasma from male index partner PP32A	1	213	6L,27I,83L,148V
HQ423721	PP32A_A0521gsm79Retest	Uganda	genomic RNA	plasma from male index partner PP32A	1	213	6L,27I,83L,103N,148V,180D
HQ423907	PP34A_A0512_gcon_B6	Uganda	genomic RNA	plasma from male index partner PP34A	1	213	6A,11I,14P,15F,24I,27I,31G,50H,54M,58V,71D,83L,92P,110N,128N,132G,148V,154K,169F,171A,178T,183G,187D,191I,200S,207S,208G
HQ423935	PP35A_A0874_gconBr1s1	Uganda	genomic RNA	plasma from female index partner PP35A	1	213	6L,14P,15L,27I,41T,50S,54S,83L,87Q,110N,116A,120G,148V,180D
HQ423748	PP37B_B0786gconB6s2	Botswana	genomic RNA	plasma from male seroconverting partnerPP37B	1	213	6L,27I,31G,59IL,71D,83L,116A,124M,128D,148V,169F,170KR,178T,180D,207S,208G
HQ423712	PP39B_A0805gconRetest	Kenya	genomic RNA	plasma from male seroconverting partnerPP39B	1	213	6A,15L,27I,54M,58I,71D,83L,92P,111P,116A,120G,128D,148V,154K,169F,171V,180D,203R,207A,208G
HQ423930	PP39B_B0698_gconBr2s1	Kenya	genomic RNA	plasma from male seroconverting partnerPP39B	1	213	6A,15L,27I,29D,54M,58I,71D,83L,92P,96I,111P,116A,120G,128D,148V,154K,169F,171V,180D,203R,207A,208G
HQ423697	PP40A_A0067gconRetest	Kenya	genomic RNA	plasma from female index partner PP40A	1	213	6A,11I,15V,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,183G,203R,207T,208G
HQ424008	PP45A_A0110_gconBr1s1	Kenya	genomic RNA	plasma from female index partner PP45A	1	205	6A,11I,14N,15L,27I,54M,58V,71D,83L,92P,111P,120G,128D,148V,154K,169F,180D,200S
HQ423921	PP45B_A0226_longGagcon_B8	Kenya	genomic RNA	plasma from male seroconverting partnerPP45B	1	213	6A,11I,14T,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,163E,169F,178T,187D,200S,203R,208G
HQ423906	PP48A_A0908_Gcon_B8	Kenya	genomic RNA	plasma from male index partner PP48A	1	213	6L,14P,27I,83L,91Q,96L,116A,128N,132G,148V,152E,180D,191I
HQ423909	PP48B_A0485_Gcon_B8	Kenya	genomic RNA	plasma from female seroconvertingpartner PP48B	1	213	6L,14PS,27I,50E,83L,91Q,96L,116A,128N,132G,148V,152E,180D,191I
HQ423703	PP50B_6A04gconB2	South Africa	genomic RNA	plasma from male seroconverting partnerPP50B	1	213	6L,27I,41T,71D,91N,112A,116A,120S,128D,148V,169F,178T,180D,203G,208G
HQ423702	PP50B_6A04gconB2s2	South Africa	genomic RNA	plasma from male seroconverting partnerPP50B	1	213	6L,27I,41T,71D,91N,112A,116A,120S,128D,148V,169F,178T,180D,203R,208G
HQ423749	PP52A_B0717gconB7	South Africa	genomic RNA	plasma from female index partner PP52A	1	213	6L,15L,27I,41T,71D,96V,116T,120S,148V,169F,178T,187D,203R,208G
HQ423980	PP54A_A0236_gconBr1s1	South Africa	genomic RNA	plasma from female index partner PP54A	1	203	6L,13H,14P,15L,27I,41T,71D,83L,91V,115V,116A,118I,120G,148V,154K,169F,178T,180D,187D,203R
HQ423741	PP55A_B0890gconB7s2	South Africa	genomic RNA	plasma from male index partner PP55A	1	213	6A,13T,14P,27I,31N,41T,71D,83L,96L,116A,128D,148V,154K,169F,178T,180D,187D,203R,204G,207Q,208G,210S
HQ423944	PP56A_A0735_gconBr1s1	South Africa	genomic RNA	plasma from male index partner PP56A	1	213	6L,27I,41T,71D,83I,116A,120S,124V,148V,154K,169F,178T,180D,187D,200I,204G,207A,208G,210S
HQ423904	PP56A_A1000_gcon_Br7	South Africa	genomic RNA	plasma from male index partner PP56A	1	213	6L,27I,41T,71D,83M,91V,94N,96I,116T,120S,124V,148V,154K,169F,178T,180D,187D,200I,204G,207A,208G,210S
HQ423742	PP57A_B0865gconB7s2	South Africa	genomic RNA	plasma from female index partner PP57A	1	213	6A,27I,33N,71D,83L,116A,120G,128D,148V,154K,169F,171A,178T,180D,187D,199R,207S,208G,210S
HQ423886	PP60A_B0999_gcon_B12	South Africa	genomic RNA	plasma from female index partner PP60A	1	213	6L,27I,41T,71D,83M,91V,110N,116A,120G,121T,124V,148V,169F,178T,180D,187D,203R,208G
HQ423793	PP60B_A0331gconB12	South Africa	genomic RNA	plasma from male seroconverting partnerPP60B	1	213	6L,27I,41T,71D,83M,91V,110N,116A,120G,121T,124V,148V,169F,178T,180D,187D,203R,208G
HQ423885	PP61A_B0673_gcon_B12	Kenya	genomic RNA	plasma from male index partner PP61A	1	213	6A,10W,33N,83L,86P,87Q,96I,110N,116A,120S,148V,187D,200S,208G
HQ423918	PP62A_A0937GCX1_B10	Kenya	genomic RNA	plasma from female index partner PP62A	1	214	6L,15L,27I,83L,92P,116Q,120S,124V,148V,154K,177G,180D,183Q,208G
HQ423920	PP62A_A0937GCX10_B10	Kenya	genomic RNA	plasma from female index partner PP62A	1	214	6L,15L,27I,37V,71D,83L,92P,116Q,120S,124V,148V,154K,177G,180D,183Q,208G
HQ423914	PP62A_A0937GCX2_B10	Kenya	genomic RNA	plasma from female index partner PP62A	1	214	6L,15L,27I,33N,71D,83L,92P,116Q,120S,124V,148V,154K,177G,180D,208G
HQ423915	PP62A_A0937GCX3_B10	Kenya	genomic RNA	plasma from female index partner PP62A	1	214	6L,15L,27I,83L,92P,116Q,120S,124V,148V,154K,177G,180D,183Q,208G
HQ423916	PP62A_A0937GCX4_B10	Kenya	genomic RNA	plasma from female index partner PP62A	1	214	6L,15L,27I,83L,92P,116Q,120S,124V,134V,148V,154K,177G,180D,183Q,208G
HQ423911	PP62A_A0937GCX5_B10	Kenya	genomic RNA	plasma from female index partner PP62A	1	214	6L,15L,27I,83L,92P,116Q,120S,124V,148V,154K,177G,180D,183Q,208G
HQ423913	PP62A_A0937GCX6_B10	Kenya	genomic RNA	plasma from female index partner PP62A	1	214	6L,15L,27I,75K,83L,92P,116Q,120S,124V,148V,154K,177G,180D,183Q,208G
HQ423912	PP62A_A0937GCX7_B10	Kenya	genomic RNA	plasma from female index partner PP62A	1	214	6L,15L,27I,83L,92P,116Q,120S,124V,148V,154K,177G,180D,183Q,208G
HQ423919	PP62A_A0937GCX8_B10	Kenya	genomic RNA	plasma from female index partner PP62A	1	214	6L,15L,27I,71D,83L,92P,116Q,120S,124V,148V,154K,177G,180D,183Q,208G
HQ423917	PP62A_A0937GCX9_B10	Kenya	genomic RNA	plasma from female index partner PP62A	1	214	6L,15L,27I,83L,92P,116Q,120S,124V,148V,154K,177G,180D,183Q,208G
HQ423717	PP63A_A0600gconB10	Kenya	genomic RNA	plasma from female index partner PP63A	1	213	6A,11M,15L,26A,27I,30R,31G,54M,58I,71D,79D,83L,87Q,92P,111P,120S,148V,154K,169F,178T,183G,200S,203R,207S,208G
HQ423892	PP63B_B0944_gcon_B10	Kenya	genomic RNA	plasma from male seroconverting partnerPP63B	1	213	6A,15L,41T,50S,71D,83L,87Q,92P,96L,110N,120S,148V,154K,169F,178T,187D,200S,203R,208G,210S
HQ423787	PP64A_A0404gconB10	Kenya	genomic RNA	plasma from male index partner PP64A	1	213	6A,11I,15L,27I,30R,31G,54M,58I,71D,92P,111I,120S,128D,129L,148V,154K,169F,178T,194S,200S,208G
HQ423893	PP64B_B0261_gcon_B10	Kenya	genomic RNA	plasma from female seroconvertingpartner PP64B	1	215	6A,11I,15L,27I,30R,31G,54M,58I,71D,92P,111I,120S,128D,129L,148V,154K,169F,178T,194S,200S,208G
HQ423889	PP65A_B0032_gcon_B12	Zambia	genomic RNA	plasma from female index partner PP65A	1	214	14P,15L,27I,41T,71D,83L,91N,92P,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G,210S
HQ423789	PP65B_A0425gconB12	Zambia	genomic RNA	plasma from male seroconverting partnerPP65B	1	213	6L,14P,15L,27I,41T,71D,83L,91N,92P,116A,120G,128D,148V,154K,169F,178T,187D,203R,208G,210S
HQ423997	PP66A_A0105_gconB13s1	Zambia	genomic RNA	plasma from male index partner PP66A	1	213	6L,27I,41T,83M,115V,120S,121T,148V,187D,208G
HQ423775	PP67A_A0986gconB10	Uganda	genomic RNA	plasma from female index partner PP67A	1	213	6L,27I,41T,83M,115V,120S,121T,148V,180D,208G
HQ423891	PP67B_B0209_gcon_B10	Uganda	genomic RNA	plasma from male seroconverting partnerPP67B	1	216	6L,27I,41T,83M,115V,120S,121T,148V,180D,208G
HQ423988	PP68A_A0338_gconB13s1	Uganda	genomic RNA	plasma from female index partner PP68A	1	213	6A,11I,12Y,15V,27I,54M,58I,71D,83L,86A,87Q,96I,111P,116A,118I,120G,148V,154K,169F,177C,178T,183G,191I,203R,207A,208G
HQ423845	PP68B_B0070gconB13	Uganda	genomic RNA	plasma from male seroconverting partnerPP68B	1	213	6A,11IT,12Y,15V,27I,54M,58I,59I,71D,83L,86A,87Q,96I,111T,116A,118I,120G,148V,154K,169F,177C,178T,183G,203R,207A,208G
HQ423985	PP70A_A0407_gconB13s1	Botswana	genomic RNA	plasma from female index partner PP70A	1	213	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,171I,178T,183G,187D,203R,208G,210S
HQ423698	PP71A_A0040gconB14	Botswana	genomic RNA	plasma from female index partner PP71A	1	213	6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,154K,169F,178T,180D,195NS,203R,208G
HQ423877	PP71B_B0998_gcon_B14	Botswana	genomic RNA	plasma from male seroconverting partnerPP71B	1	215	6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,154K,169F,178T,180D,203R,208G
HQ423735	PP72A_A0520gconB10	Botswana	genomic RNA	plasma from female index partner PP72A	1	204	6L,14P,15L,27I,41T,50S,54S,71D,83T,91V,116A,120S,128D,148V,169F,178T,203R
HQ423890	PP72B_B0613_gcon_B10	Botswana	genomic RNA	plasma from male seroconverting partnerPP72B	1	207	6L,14P,15L,27I,41T,50S,71D,83T,91V,116A,120S,128D,148V,169F,178T,180D,203R
HQ423715	PP73A_A0753gconB14	Kenya	genomic RNA	plasma from female index partner PP73A	1	207	6A,11I,14T,15L,27I,54M,58I,71D,83L,92P,107V,111P,118I,120A,128D,132K,148V,154K,163E,169F,178T,180D,200S,203R,207I
HQ423880	PP73B_B0452_gcon_B14	Kenya	genomic RNA	plasma from male seroconverting partnerPP73B	1	214	6A,14T,15L,27I,54M,58I,71D,83L,92P,107V,111P,118I,120A,128D,132K,148V,154K,163E,169F,178T,180D,200S,203R,207T,208G
HQ423778	PP74A_A0906gconB10	Kenya	genomic RNA	plasma from male index partner PP74A	1	213	6A,11I,12Y,15L,27I,30R,31G,48A,54M,58I,71D,83L,92P,111P,128D,148V,154K,169F,178T,183G,200S,203R,208G
HQ423895	PP74B_B0904_gcon_B10	Kenya	genomic RNA	plasma from female seroconvertingpartner PP74B	1	204	6A,14S,15L,27I,54M,58V,71D,83L,92P,111P,120G,128D,148V,154K,169F,171V,183G,187D,200S,204H
HQ423790	PP75A_A0869gconB14	Kenya	genomic RNA	plasma from female index partner PP75A	1	213	6A,11I,13PQ,15V,27I,31G,58I,71D,92P,111I,120S,124V,128D,148V,154K,169F,178T,183G,203R,207S,208G,211I
HQ423779	PP76A_A0303gconB10	Kenya	genomic RNA	plasma from male index partner PP76A	1	213	6V,14S,15L,27I,29D,54M,58V,71D,83T,86A,87Q,91Y,92P,96I,97K,107A,111I,116A,120S,124V,148V,154K,169F,171V,178T,183S,200S
HQ423894	PP76B_B0697_gcon_B10	Kenya	genomic RNA	plasma from female seroconvertingpartner PP76B	1	214	6V,14N,15L,27I,29D,54M,58V,71D,83T,86A,87Q,91Y,92P,96I,107A,111I,116A,120S,124V,148V,154K,169F,178T,183S,200S,208G
HQ423671	PP77A_A0436gconB14	Kenya	genomic RNA	plasma from male index partner PP77A	1	213	6A,9~,14P,15L,26A,27I,30R,31G,36I,48I,54M,58I,71D,83L,92P,111P,115V,116A,120G,128D,132K,138F,148V,154K,169F,180D,183G,200S,203R,207A,208G
HQ423879	PP78B_B0868_gcon_B14	Kenya	genomic RNA	plasma from female seroconvertingpartner PP78B	1	213	6L,11I,27I,41T,50T,71D,83L,91H,96L,116A,128D,148V,154K,169F,177S,178T,187D,203R,207T,208G
HQ424009	PP79A_A0721_gconB11s1	Kenya	genomic RNA	plasma from female index partner PP79A	1	213	6A,11I,14N,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,200S,203R,204S,207A,208G
HQ423854	PP79B_B0754gconB11	Kenya	genomic RNA	plasma from male seroconverting partnerPP79B	1	213	6A,14N,15L,27I,54M,58I,79D,83L,86A,91V,111P,116A,120G,128D,148V,179P,180D,183R,200A,207A,208G
HQ424005	PP7A_A0064_gconBr1s1_notsogood	Zambia	genomic RNA	plasma from male index partner PP7A	1	213	3IV,4HQ,6L,15V,27I,41T,54S,71D,83L,116A,120S,148V,153V,154K,169F,171I,178T,180D,187D,203R
HQ423767	PP80A_A0211gconB14	Kenya	genomic RNA	plasma from female index partner PP80A	1	213	6A,10W,11T,14P,15V,27I,30R,50G,54M,58I,71D,111P,116A,120G,128D,148V,154K,169F,178T,183G,187D,200S,203R,208GR
HQ423878	PP80B_B0858_gcon_B14	Kenya	genomic RNA	plasma from male seroconverting partnerPP80B	1	215	6A,10W,11T,14P,15V,27I,30R,50G,54M,58I,71D,111P,116A,120G,128D,148V,154K,169F,178T,183G,187D,200S,203R,208G
HQ423850	PP81B_B0412gconB11	Kenya	genomic RNA	plasma from female seroconvertingpartner PP81B	1	217	6A,10P,11M,14P,15L,26A,27I,30R,31G,54M,58I,71D,79D,92P,111V,120S,148V,154K,169F,178T,183G,200S,203R,207S,208G
HQ423993	PP82A_A0191_gconB11s1	Kenya	genomic RNA	plasma from male index partner PP82A	1	208	6M,27I,31AV,55LM,83L,90LP,148V,172*LQ,177AV,179QR,180D,186IT,201X,205X
HQ423853	PP82B_B0893gconB11	Kenya	genomic RNA	plasma from female seroconvertingpartner PP82B	1	213	6M,27I,83L,148V,180D
HQ424004	PP83A_A0197_gconB11s1	Kenya	genomic RNA	plasma from female index partner PP83A	1	213	6L,29D,41A,83L,132K,136M,148V,180D,183T
HQ423849	PP83B_B0182gconB11	Kenya	genomic RNA	plasma from male seroconverting partnerPP83B	1	213	6A,15V,27I,54M,58I,71D,83L,87Q,92P,96I,111P,116A,120G,128D,148V,154K,169F,178T,180D,187D,191I,200S,203R,208G
HQ423882	PP84B_B0401_gcon_B14	Kenya	genomic RNA	plasma from female seroconvertingpartner PP84B	1	217	6A,11T,15F,27I,30R,31G,36L,54M,58I,71D,83L,92P,111P,115V,120G,128D,139T,148V,154K,169F,171V,178T,183G,203R,204S,207T,208G
HQ423903	PP85A_A0499_gcon_Br11_1	Kenya	genomic RNA	plasma from female index partner PP85A	1	213	6L,14N,15L,27I,31G,45D,54S,58I,91N,116A,120S,148V,180D
HQ423686	PP85A_A0499_gcon_Br11_2	Kenya	genomic RNA	plasma from female index partner PP85A	1	213	6L,14N,15L,27I,31G,45D,54S,58I,83I,116A,120S,148V,180D
JF294997	PP85B-B0840-gconBr3	Kenya	genomic RNA	plasma from male seroconverting partnerPP85B	1	215	6L,14N,15L,27I,31G,45D,54S,58I,116A,120S,148V,180D,201X
HQ423983	PP86B_A0704_gconB15s1	Kenya	genomic RNA	plasma from male seroconverting partnerPP86B	1	213	6L,14P,15L,27I,41T,79D,83Q,91V,115V,116A,120S,148V,177C,178T,180D
HQ423844	PP87A_B0656gconB15	Kenya	genomic RNA	plasma from male index partner PP87A	1	215	6A,11I,14N,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,171V,178T,183G,200S,203R,207S,208G
HQ424006	PP87B_A0102_gconB15s1	Kenya	genomic RNA	plasma from female seroconvertingpartner PP87B	1	201	6A,11I,14N,15L,27I,54M,58I,71D,83L,90AP,92P,111P,120S,128D,131EK,138LV,148V,154K,169F,171V,178T,183G,200S
HQ423831	PP88A_B0441gconB15	Kenya	genomic RNA	plasma from female index partner PP88A	1	202	6A,11I,14N,15L,27I,29D,50H,54M,58I,71D,79D,83L,87Q,92P,96I,111P,115L,116Q,120S,148V,154K,169F,171V,180D,183T,187D,200S
HQ423991	PP88B_A0029_gconB15s1	Kenya	genomic RNA	plasma from male seroconverting partnerPP88B	1	213	6A,11I,14N,15L,27I,50H,54M,58I,71D,79D,83L,87Q,92P,96I,111P,115L,116Q,120S,148V,149G,154K,169F,171V,180D,183H,192HQ,200S,203R,207S,208G,212*EQ
HQ423972	PP89A_A0532_gconB11s1	Kenya	genomic RNA	plasma from female index partner PP89A	1	213	6A,11I,14S,26A,27I,50S,54M,58I,71D,83L,92P,111T,120S,128D,148V,154K,169F,174AD,178T,183G,191I,200N,203R,207A,208G,210S
HQ423852	PP89B_B0729gconB11	Kenya	genomic RNA	plasma from male seroconverting partnerPP89B	1	213	6A,11I,14S,26A,27I,50S,54M,58I,71D,83L,92P,111T,120S,128D,148V,154K,169F,178T,183G,191I,203R,207A,208G,210S
HQ423782	PP8A_A0228gconRetest	Zambia	genomic RNA	plasma from female index partner PP8A	1	213	6L,27I,41T,50S,56M,69I,71D,75D,83L,87Q,116A,120G,124V,141V,148V,169F,178T,180D,187D,191I,203R,208G
HQ423947	PP8B_B0547_gconBr2s1	Zambia	genomic RNA	plasma from male seroconverting partnerPP8B	1	213	6L,27I,41T,50S,56M,69I,71D,75D,83L,87Q,116A,120G,124V,141V,148V,169F,178T,180D,187D,191I,203R,208G
HQ424000	PP90A_A0606_gconB11s1	Tanzania	genomic RNA	plasma from female index partner PP90A	1	213	6L,14P,15L,27I,41T,71D,83L,87Q,91H,92P,96V,98D,116A,148V,154K,169F,178T,180D,187D,203R,208G,210S
HQ423851	PP90B_B0351gconB11	Tanzania	genomic RNA	plasma from male seroconverting partnerPP90B	1	213	6L,14P,15L,27I,41T,71D,83L,87Q,91H,92P,96V,98D,116A,120H,148V,154K,169F,178T,180D,187D,203R,208G,210S
HQ423827	PP92A_B0019gconB15	South Africa	genomic RNA	plasma from female index partner PP92A	1	205	6L,15L,41T,71D,91V,116S,120S,148V,154K,169F,178T,180D,187D,200I,203R,204G
HQ423883	PP93A_B0124_gcon_B12	South Africa	genomic RNA	plasma from female index partner PP93A	1	213	6L,14S,15L,27I,33N,36I,41T,71D,83L,91V,116A,120S,124V,128D,148V,154K,169F,171V,178T,183H,187D,203R,208G
HQ423716	PP93B_A0723gconB12	South Africa	genomic RNA	plasma from male seroconverting partnerPP93B	1	204	6A,14S,27I,41T,71D,83L,87P,91P,96I,98D,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,204D
HQ423768	PP94B_A0208gconB12	South Africa	genomic RNA	plasma from male seroconverting partnerPP94B	1	213	6L,27I,41T,71D,83L,87Q,96I,116A,120G,124V,128D,148V,154K,169F,178T,183G,187D,203R,208G
HQ423840	PP95A_B0658gconB15	South Africa	genomic RNA	plasma from female index partner PP95A	1	216	6H,27I,41T,71D,83L,91V,116A,120G,122Q,148V,154K,160S,169F,178T,180D,187D,203R,208G
HQ423975	PP95B_A0315_gconB16s1	South Africa	genomic RNA	plasma from male seroconverting partnerPP95B	1	215	6H,27I,41T,71D,83L,86A,87Q,96I,110N,116A,120S,148V,154K,169F,178T,183H,187D,203R,208G
HQ423788	PP96B_A0343gconB12	South Africa	genomic RNA	plasma from male seroconverting partnerPP96B	1	213	6L,15L,27I,41T,52I,71D,75D,83M,92Q,116A,120S,124V,132K,136I,139Q,148V,169F,178T,187D,199R,208G
HQ423841	PP97A_B0639gconB15	South Africa	genomic RNA	plasma from female index partner PP97A	1	217	6A,14P,27I,41T,71D,83L,87P,91V,96L,98D,116T,128D,148V,154K,169F,178T,180D,187D,203R,208G
HQ423786	PP98B_A0442gconB12	South Africa	genomic RNA	plasma from male seroconverting partnerPP98B	1	213	21S,27I,41T,71D,91N,92P,110N,116A,120S,124V,148V,169F,171V,178T,180D,203R
HQ423954	PP99A_A0958_gconB13s1	South Africa	genomic RNA	plasma from female index partner PP99A	1	221	6L,27I,41T,50PQ,71D,83L,91V,98D,116A,120A,124V,128D,148V,169F,178T,180DN,203GR,208G,218X
HQ423848	PP99B_B0108gconB13	South Africa	genomic RNA	plasma from male seroconverting partnerPP99B	1	220	6L,27I,41T,50T,71D,83L,86A,116A,120A,124V,128D,148V,169F,178T,180D,203R,208G
HQ423939	SC10A_A0794_gconB18s1	Uganda	genomic RNA	plasma from female index partner SC10A	1	214	6A,12Y,15V,27I,30R,54M,58I,71D,83L,91V,111P,116A,120G,128D,148V,154K,169F,171C,178T,183G,200S,203R,210S
HQ423682	SC10B_B0930gconB18	Uganda	genomic RNA	plasma from male seroconverting partnerSC10B	1	213	6A,12Y,15V,27I,30R,54M,58I,71D,83L,91V,111P,116A,120G,128D,148V,154K,169F,171C,180D,183G,200S,203R,210S
HQ423931	SC13A_A0953_gconB18s1	Kenya	genomic RNA	plasma from male index partner SC13A	1	214	6A,11I,15L,27I,30R,31G,50G,54M,58I,59I,71D,79D,83L,86A,87Q,91M,92P,111P,148V,154K,169F,178T,183G,200S,207S,208G
HQ423817	SC13B_B0341gconB18	Kenya	genomic RNA	plasma from female seroconvertingpartner SC13B	1	214	6A,11I,15L,27I,30R,31G,50G,54M,58I,59I,71D,79D,83L,86A,87Q,91M,92P,111P,148V,154K,169F,178T,183G,200S,207S,208G
HQ423958	SC14A_A0679_gconB18s1_bad	Kenya	genomic RNA	plasma from female index partner SC14A	1	214	6A,11I,14N,15L,31G,54M,58I,71D,83L,91V,111P,116Q,120S,128D,148V,154K,160S,169F,171C,178T,183G,200S,203R,207T,208G,210S
HQ423804	SC14B_B0660gconB18	Kenya	genomic RNA	plasma from male seroconverting partnerSC14B	1	214	6A,11I,14N,15L,31G,54M,58I,83L,91V,111P,116Q,120S,128D,148V,154K,160S,169F,171C,178T,183G,200S,203R,207T,208G,210S
HQ423816	SC15A_B0350gconB19	Kenya	genomic RNA	plasma from female index partner SC15A	1	216	6L,15M,27I,41T,71D,72ST,83L,87P,91V,96L,116A,120H,124V,136LM,148I,154K,169F,178T,180D,187D,191I,203R,208G,210S
HQ423700	SC15B_A0006gconB19	Kenya	genomic RNA	plasma from male seroconverting partnerSC15B	1	213	6L,14S,15L,27I,50T,83L,96L,116Q,148V,180D
HQ423699	SC15B_A0006gconB19s2	Kenya	genomic RNA	plasma from male seroconverting partnerSC15B	1	213	6L,14S,15L,27I,50T,83L,96L,116Q,148V,180D
HQ423819	SC16A_B0218gconB19	Kenya	genomic RNA	plasma from female index partner SC16A	1	215	6A,14P,15L,16T,25R,26A,27I,30R,31S,54M,58V,71D,83L,91V,92P,96L,111P,120G,128D,148V,154K,162K,169F,178T,183G,200A,203R,207A,208G,210S
HQ423709	SC16B_A0877gconB19	Kenya	genomic RNA	plasma from male seroconverting partnerSC16B	1	201	6A,14P,15L,26A,27I,30R,54M,58V,71D,83L,87R,91L,92P,93L,96L,111T,116A,120G,128D,148V,154K,162K,169F,178T,183G,200A
HQ423708	SC16B_A0877gconB19s2	Kenya	genomic RNA	plasma from male seroconverting partnerSC16B	1	213	6A,14P,15L,26A,27I,30R,54M,58V,71D,83L,87R,91L,92P,93L,96L,111T,116A,120G,128D,148V,154K,162K,169F,178T,183G,200A,203R,207A,208G,212Q
HQ423798	SC18A_B0980gconB19	South Africa	genomic RNA	plasma from female index partner SC18A	1	215	6L,27I,41T,71D,75D,83L,91V,93A,116A,120S,148V,169F,178T,180D,187D,200I,204G,207S,208G
HQ423720	SC18B_A0549gconB19	South Africa	genomic RNA	plasma from male seroconverting partnerSC18B	1	213	6L,15L,27I,41T,71D,75D,83L,91A,93A,116A,120S,148V,169F,178T,180D,187D,191I,200I,204G,207S,208G
HQ423719	SC18B_A0549gconB19s2	South Africa	genomic RNA	plasma from male seroconverting partnerSC18B	1	213	6L,15L,27I,41T,71D,75D,83L,91A,93A,116A,120S,148V,169F,178T,180D,187D,191I,200I,203E,204G,207S,208G
HQ423799	SC19A_B0954gconB19	Zambia	genomic RNA	plasma from female index partner SC19A	1	215	6L,13N,14P,15L,27I,41T,68I,71D,83L,116A,120S,128D,148V,169F,178T,180D,202*L,203R,208G
HQ423714	SC19B_A0804gconB19	Zambia	genomic RNA	plasma from male seroconverting partnerSC19B	1	201	6L,15L,27I,41T,71D,86Q,87A,91V,96I,98D,110N,116T,120G,148V,169F,178T,187D
HQ423713	SC19B_A0804gconB19s2	Zambia	genomic RNA	plasma from male seroconverting partnerSC19B	1	201	6L,15L,27I,41T,71D,86Q,87A,91V,96I,98D,110N,116T,120G,148V,169F,178T,187D
HQ423707	SC1A_A0878gconB17	South Africa	genomic RNA	plasma from female index partner SC1A	1	212	6L,27I,41T,71D,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,207Q,208G
HQ423736	SC2A_A0477gconB17	Kenya	genomic RNA	plasma from female index partner SC2A	1	213	6T,10W,11I,14N,15L,27I,31G,33N,50H,54M,58I,71D,83L,111P,115L,116A,120S,128D,148V,154K,169F,171V,178T,183G,200S,203R,207S,208G
HQ423922	SC2B_B0917_GCON_BKG17	Kenya	genomic RNA	plasma from male seroconverting partnerSC2B	1	213	6T,10W,11I,14N,15L,27I,31G,33N,50H,54M,58I,71D,83L,111P,115L,116A,120S,128D,148V,154K,169F,171V,178T,183G,200S,203R,207S,208G
HQ423784	SC3A_A0242gconB17	Zambia	genomic RNA	plasma from female index partner SC3A	1	213	6P,11I,27I,41T,71D,83L,91A,116A,120S,148V,154K,169F,178T,187D,203R,208G
HQ423923	SC3B_B0732_GCON_BKG17	Zambia	genomic RNA	plasma from male seroconverting partnerSC3B	1	213	6P,11I,27I,41T,71D,83L,91V,116A,120S,148V,154K,169F,178T,187D,203R,208G
HQ423783	SC4A_A0337gconB17	Uganda	genomic RNA	plasma from male index partner SC4A	1	213	6A,12Y,15V,27I,30R,54M,58I,71D,83L,87Q,92P,96L,111P,120G,128D,148V,154K,169F,171A,180D,183G,187D,200S,207S,208G
HQ423924	SC4B_B0216_GCON_BKG17	Uganda	genomic RNA	plasma from female seroconvertingpartner SC4B	1	213	6A,12Y,15V,27I,30R,54M,58I,71D,83L,87Q,92P,96L,111P,120G,128D,148V,154K,169F,171A,180D,183G,187D,200S,207S,208G
HQ423927	SC5B_B0605_GCON_BKG17	Uganda	genomic RNA	plasma from male seroconverting partnerSC5B	1	213	6A,10A,11I,14S,15L,31G,54M,58I,71D,83L,91A,111I,116A,120G,128D,148V,154K,169F,178T,183G,203R,204G,207S,208G,210S
HQ423792	SC6A_A0273gcon01B17	Uganda	genomic RNA	plasma from male index partner SC6A	1	213	2V,6Q,11I,12Y,14C,15L,41T,68I,83L,96L,111P,113D,116A,120A,148V,171V,180D,191T,208G,210S
HQ423926	SC6B_B0145_GCON_BKG17	Uganda	genomic RNA	plasma from female seroconvertingpartner SC6B	1	213	2V,6P,11I,12Y,14C,15L,27I,41T,83L,91V,110S,113D,116A,120A,131KR,148V,171V,180D,187D,191T,208G
HQ423925	SC7B_B0385_GCON_BKG17	Uganda	genomic RNA	plasma from female seroconvertingpartner SC7B	1	204	2V,6L,11I,12Y,14T,15L,27I,36I,41T,75D,83L,91V,111P,120S,148V,180D,202*,204H
HQ423814	SC8B_B0279gconB18	Uganda	genomic RNA	plasma from female seroconvertingpartner SC8B	1	217	6A,14T,15L,27I,54M,58I,71D,83L,86P,111P,116A,120A,128D,148V,154K,169F,191I,200S,203R,208G
HQ423968	SC9A_A0701_gconB18s1	Uganda	genomic RNA	plasma from male index partner SC9A	1	215	4H,6A,12Y,15L,26A,27I,30R,36I,48A,54M,58V,71D,83L,92P,111P,120G,128D,148V,154K,169F,178T,183G,187D,191I,200S,203R,208G
HQ423828	SC9B_B0302gconB18	Uganda	genomic RNA	plasma from female seroconvertingpartner SC9B	1	214	4H,6A,12Y,15L,26A,27I,30R,36I,48A,54M,58V,71D,83L,92P,111P,120G,128D,148V,154K,169F,178T,183G,187D,191I,200S,203R,208G

Genbank References: capsid (p24)

Database

Resources

Team