<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb
#PtsARTSourceCloningStudyType
Rodgers (2017) Sensitive next generation sequencing method reveals deep genetic diversity of HIV-1 in the Democratic Republic of the Congo J. Virol. (2017) In press 1.6e-149 28 28 Naive Plasma Direct PCR Molecular epidemiology

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AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
KY365201CG-0018a-01Democratic Republic 15-May-2001genomic RNAgenotype: L42136A,14S,71D,79D,83L,92P,110I,120S,148V,154K,169F,171I,183G,187D,204S,207Q,208G
KY392773CG-0059-01Democratic Republic 27-May-2002NGSID8genomic RNAgenotype: A1/k/a1/h/g/h12316A,9H,14P,15M,27I,31G,47G,54M,58I,59I,71D,78V,83T,92P,120S,124T,148V,169F,178T,203R
KY365188CG-0062-01Democratic Republic 13-Jul-2001genomic RNAgenotype: A142136A,9H,14P,15M,27I,31G,47G,54M,58I,59I,71D,78V,83T,92P,120S,124T,148V,162KR,169F,178T,203R
KY392774CG-0062-01Democratic Republic 26-Nov-2002NGSID10genomic RNAgenotype: A1/k/a1/h/g/h12316A,9H,14P,15M,27I,31G,47G,54M,58I,59I,71D,78V,83T,92P,120S,124T,148V,169F,178T,203R
KY392780CG-0066-01Democratic Republic 17-Jul-2001NGSID18genomic RNAgenotype: A1/k/A1/j/A12316A,15V,27I,54M,58I,71D,79D,83T,92P,120S,124V,148V,169F,180D,187D,207Q,208G
KY365189CG-0103a-02Democratic Republic 2001genomic RNAgenotype: A142136A,14S,15M,27I,48A,54M,58V,71D,79D,83T,92P,120S,128D,148V,154K,169F,171V,177G,178T,204S,207Q,208G
KY365190CG-0147-02VDemocratic Republic 06-Mar-2002genomic RNAgenotype: A142136A,27I,41T,75D,83L,91A,92P,120S,148V,169F,178T,180D,203KR,207A,208G
KY392767CG-0151-02VDemocratic Republic 07-Mar-2002NGSID1genomic RNAgenotype: C12316L,14S,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,187D,203R,208G,225S,230I
KY365202CG-0248-02VDemocratic Republic 20-May-2002genomic RNAgenotype: A142136A,14S,15M,27I,54M,58I,71D,83L,92P,115V,120S,121T,128D,148V,169F,178T,180D,187D,203R,208G
KY392779CG-0260-02VDemocratic Republic 23-Apr-2001NGSID16genomic RNAgenotype: H12316A,14P,15L,71D,83T,92P,116A,118I,120G,123S,148V,154K,160S,169F,178T,187A,203R,208G,211I,225S
KY365199CG-0331-02VDemocratic Republic 20-Jul-2002genomic RNAgenotype: J42136V,10P,15L,27I,83M,116A,120G,148V,207A,208G
KY392776CG-0331-02VDemocratic Republic 10-Dec-2002NGSID13genomic RNAgenotype: J12316V,10P,15L,27I,83M,116A,120G,148V,207A,208G
KY392770CG-0349-02Democratic Republic 04-Aug-2002NGSID5genomic RNAgenotype: F112316Q,14S,27I,71D,78G,83L,92P,116Q,120S,124V,148V,154K,169F,177C,178T,183G,203R,208G,230I
KY365191CG-0354-02VDemocratic Republic 06-Aug-2002genomic RNAgenotype: A142136A,11I,14N,15M,27I,31N,41T,54M,58I,71D,83I,92P,116A,120S,124V,128D,148V,169F,178T,180D,187D,203R,204G,207A,208G
KY365194CG-0373-02VDemocratic Republic 22-Aug-2002genomic RNAgenotype: C42136A,15L,31G,33N,41T,58V,61T,71D,83I,86A,87Q,91V,96I,98D,110N,116A,148V,154K,162K,169F,178T,180DE,187D,200NS,203R,208G
KY392768CG-0373-02VDemocratic Republic 22-Aug-2002NGSID2genomic RNAgenotype: C12316A,15L,31G,33N,41T,58V,61T,71D,83I,86A,87Q,91V,96I,98D,110N,116A,148V,154K,162K,169F,178T,180D,187D,200N,203R,208G,225S
KY392771CG-0378-02VDemocratic Republic 25-Aug-2002NGSID6genomic RNAgenotype: A1/g/A1/g/h/H/G12316A,15V,27I,54V,58I,71D,83I,92P,120G,124V,131R,148V,169F,171A,178T,180D,187D,200S,207T,208G,225S
KY392772CG-0379-02VDemocratic Republic 25-Aug-2002NGSID7genomic RNAgenotype: crf24/A1/crf2512316A,71D,83L,86P,87Q,92P,96I,98D,110N,116A,120S,148V,154K,169F,178T,183G,187D,200N,203R,208G
KY392769CG-0382-02VDemocratic Republic 29-Aug-2002NGSID3genomic RNAgenotype: D12316L,14P,15L,27I,31N,41I,59I,83L,91V,110N,113D,116A,120S,124V,135V,148V,180D,208G,210S,225S
KY365197CG-0536-02Democratic Republic 26-Nov-2002genomic RNAgenotype: H42136A,50S,54S,71D,83L,87Q,92P,116A,120GS,128D,148V,154K,169F,183H,187N,200N,203R,207Q,208G,210S,211I
KY392777CG-0536-02Democratic Republic 15-May-2001NGSID14genomic RNAgenotype: H12316A,50S,54S,71D,83L,87Q,92P,116A,120S,128D,148V,154K,169F,183H,187N,200N,203R,207Q,208G,210S,211I,225S
KY365198CG-0538-02Democratic Republic 26-Nov-2002genomic RNAgenotype: H42136A,14P,30R,36I,71D,83L,92P,96IM,110N,116A,120G,123A,128D,148V,154K,169F,178T,180D,187D,200A,203R,207Q,208G,210S,211I
KY392778CG-0538-02Democratic Republic 13-Jul-2001NGSID15genomic RNAgenotype: H12316A,14P,15L,30R,36I,71D,83L,92P,96I,110N,116A,120G,123A,128D,148V,154K,169F,178T,180D,187D,200A,203R,207Q,208G,210S,211I,225S
KY365192CG-0574-02Democratic Republic 09-Dec-2002genomic RNAgenotype: U42136A,14S,26A,27I,54M,58I,71D,83T,92P,110N,120S,148V,169F,171A,178ST,183H,204S,207Q,208G
KY365200CG-0575-02Democratic Republic 10-Dec-2002genomic RNAgenotype: K421315L,27I,71D,83L,92P,116T,120S,124V,148V,154K,169F,178T,187D,208G,210S
KY392775CG-0575-02Democratic Republic 20-Jul-2002NGSID12genomic RNAgenotype: K/f/k/U/k/U123115L,27I,71D,83L,92P,116T,120S,124V,148V,154K,169F,178T,187D,208G,210S,230I
KY365193CG-1014-DDemocratic Republic 2001genomic RNAgenotype: U42136A,15M,27I,29D,31G,41T,54M,58I,71D,76K,83A,92P,115V,120S,128D,132K,148V,169F,178T,187D,203R,204G,208G
KY365195CG-1208-DDemocratic Republic 2001genomic RNAgenotype: C42136L,14T,15M,17A,27I,71D,91V,116A,120S,148V,154K,169F,178T,208G