Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Mahasha (2014)	Differential Distribution and Evolution of HIV-1 RNA Variants in the Gastrointestinal Tract of Antiretroviral Naive African AIDS Patients with Diarrhea and (or) Weight Loss	Unpublished	2.34e-160	159					Unpublished

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Accession	IsolateName	Country	Coll Date	MolType	Note	FirstAA	LastAA	MutList
KF905875	19D_CLONE1	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905866	19D_CLONE10	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905867	19D_CLONE12	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905868	19D_CLONE13	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905869	19D_CLONE14	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905870	19D_CLONE15	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905871	19D_CLONE16	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905872	19D_CLONE17	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905873	19D_CLONE18	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905874	19D_CLONE19	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905876	19D_CLONE2	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905877	19D_CLONE4	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905878	19D_CLONE5	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905879	19D_CLONE6	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,104T,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905880	19D_CLONE9	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905881	19IL_CLONE10	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905882	19IL_CLONE12	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905883	19IL_CLONE13	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905884	19IL_CLONE14	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905885	19IL_CLONE16	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905886	19IL_CLONE3	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,100W,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905887	19IL_CLONE5	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,35K,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905888	19IL_CLONE6	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,101R,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905889	19IL_CLONE8	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905890	19IL_CLONE9	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905893	19J_CLONE1	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,84R,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,191I,203R,208G,210S,225S
KF905891	19J_CLONE12	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,214V,225S
KF905892	19J_CLONE13	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905894	19J_CLONE2	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,193S,199R,203R,208G,210S,225S
KF905895	19J_CLONE5	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905896	19J_CLONE6	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905897	19J_CLONE7	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,143G,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905898	19J_CLONE8	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905899	19J_CLONE9	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905900	19L_CLONE11	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,163Y,169F,178T,180D,187D,203R,208G,210S,225S
KF905901	19L_CLONE12	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905902	19L_CLONE16	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905903	19L_CLONE17	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905904	19L_CLONE2	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905905	19L_CLONE3	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905906	19L_CLONE4	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905907	19L_CLONE5	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,212G,223E,225S
KF905908	19L_CLONE7	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905909	19L_CLONE8	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905916	19R_CLONE1	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905910	19R_CLONE10	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905911	19R_CLONE11	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905912	19R_CLONE12	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,22T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905913	19R_CLONE14	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,116A,120G,128D,146N,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905914	19R_CLONE15	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905915	19R_CLONE16	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905917	19R_CLONE2	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905918	19R_CLONE3	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,112R,116A,120G,128D,129V,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905919	19R_CLONE4	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,97G,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905920	19R_CLONE5	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,178T,180D,187V,203R,208G,210S,225S
KF905921	19R_CLONE6	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,56F,71D,83L,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905922	19R_CLONE7	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905923	19R_CLONE8	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,83L,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF905924	19R_CLONE9	South Africa	09-Jan-2008	genomic RNA	subtype: C	1	231	6A,13V,14P,15L,16T,27I,31N,41T,71D,91V,116A,120G,128D,148V,169F,178T,180D,187D,203R,208G,210S,225S
KF905925	21D_CLONE14	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,107A,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905926	21IL_CLONE10	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905927	21IL_CLONE11	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	5S,6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,96I,110N,116A,120A,124V,148V,154K,166G,169F,177C,178T,180D,187D,191A,203R,208G,210S
KF905928	21IL_CLONE12	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,40S,41T,71D,83L,87Q,91V,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905929	21IL_CLONE14	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,107A,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905930	21IL_CLONE15	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,96I,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905931	21IL_CLONE18	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905932	21IL_CLONE2	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905933	21IL_CLONE5	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,96I,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905934	21IL_CLONE6	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,36A,41T,71D,83L,87Q,91V,96I,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905935	21IL_CLONE7	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,103N,110N,116A,120A,124V,148V,169F,177C,178T,180D,187D,203R,208G,210S
KF905936	21IL_CLONE9	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,107A,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905937	21J_CLONE10	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905938	21J_CLONE11	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,96I,107A,110N,116T,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905939	21J_CLONE12	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905940	21J_CLONE13	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905941	21J_CLONE14	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S,213G
KF905942	21J_CLONE2	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,55V,71D,83L,87Q,91V,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905943	21J_CLONE3	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,53S,62Y,71D,83L,87Q,91V,110N,116A,120A,124V,134T,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905944	21J_CLONE5	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905945	21J_CLONE6	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,93S,107A,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905946	21J_CLONE7	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905947	21J_CLONE8	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905948	21J_CLONE9	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905949	21L_CLONE10	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,96I,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905950	21L_CLONE11	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905951	21L_CLONE12	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,96I,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905952	21L_CLONE13	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,67R,71D,83L,87Q,91V,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905953	21L_CLONE3	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905954	21L_CLONE4	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6P,14P,15L,16T,27I,41T,71D,83L,87Q,91V,110N,116A,120A,124V,134V,148V,154K,169F,177C,178T,180D,187D,191A,203R,208G,210S
KF905955	21L_CLONE5	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905956	21L_CLONE7	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905957	21L_CLONE8	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,96I,107A,110N,116T,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905958	21L_CLONE9	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,39L,41T,71D,83L,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905963	21R_CLONE1	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,65V,71D,83L,87Q,91V,107A,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210P
KF905959	21R_CLONE10	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905960	21R_CLONE11	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,107I,110N,116A,118T,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905961	21R_CLONE12	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,107I,110N,116A,118T,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905962	21R_CLONE13	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,47V,71D,83L,87Q,91V,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905964	21R_CLONE2	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,110N,116A,120A,128D,143K,148V,169F,177C,178T,180D,187D,203R,208G,210S
KF905965	21R_CLONE3	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,91V,107A,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905966	21R_CLONE5	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905967	21R_CLONE6	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,87Q,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905968	21R_CLONE7	South Africa	08-Feb-2008	genomic RNA	subtype: C	1	231	6L,14P,16A,27I,41T,71D,83L,91V,110N,116A,120A,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,210S
KF905973	29D_CLONE1	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,94D,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF905969	29D_CLONE11	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF905970	29D_CLONE12	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,116A,120G,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G
KF905971	29D_CLONE13	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,109G,110N,115V,116A,120A,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF905972	29D_CLONE14	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,116A,120G,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G
KF905974	29D_CLONE2	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G
KF905975	29D_CLONE3	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF905976	29D_CLONE4	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,116A,120G,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G
KF905977	29D_CLONE5	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,116A,120G,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G
KF905978	29D_CLONE7	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,119A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF905979	29D_CLONE9	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,12R,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF905983	29IL_CLONE1	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF905980	29IL_CLONE10	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF905981	29IL_CLONE11	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF905982	29IL_CLONE12	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF905984	29IL_CLONE3	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120A,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF905985	29IL_CLONE4	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF905986	29IL_CLONE5	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,66V,71D,83L,110N,115V,116A,120A,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF905987	29IL_CLONE7	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF905988	29IL_CLONE8	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,151S,154K,169F,178T,180D,187D,203R,208G
KF905989	29IL_CLONE9	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,70E,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF905994	29J_CLONE1	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF905990	29J_CLONE10	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF905991	29J_CLONE11	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,195D,203R,208G
KF905992	29J_CLONE12	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF905993	29J_CLONE15	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120A,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF905995	29J_CLONE2	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,68I,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF905996	29J_CLONE4	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	2V,6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF905997	29J_CLONE5	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,36A,41T,71D,83L,110N,115V,116A,120G,128D,140I,148V,154K,169F,178T,180D,187D,203R,208G
KF905998	29J_CLONE7	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF905999	29J_CLONE8	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,116A,120G,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G
KF906000	29J_CLONE9	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF906004	29PLA_CLONE1	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF906001	29PLA_CLONE10	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,63R,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF906002	29PLA_CLONE12	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,109R,110N,115V,116A,120G,128D,141V,148V,154K,169F,178T,180D,187D,203R,208G
KF906003	29PLA_CLONE13	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,21D,27I,41T,71D,83L,110N,115V,116A,120G,128D,147S,148V,154K,169F,178T,180D,187D,203R,208G
KF906005	29PLA_CLONE2	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	2T,6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF906006	29PLA_CLONE3	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF906007	29PLA_CLONE4	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF906008	29PLA_CLONE5	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,116A,120G,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G
KF906009	29PLA_CLONE6	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,10T,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF906010	29PLA_CLONE7	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF906011	29PLA_CLONE8	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF906012	29PLA_CLONE9	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,116A,120G,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G
KF906013	29R_CLONE10	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,96I,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF906014	29R_CLONE11	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,57S,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF906015	29R_CLONE12	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,12R,14S,27I,41T,71D,83L,101E,110N,116A,120G,128D,134V,148V,154K,169F,178T,180D,187D,203R,208G
KF906016	29R_CLONE13	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF906017	29R_CLONE14	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF906018	29R_CLONE15	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF906019	29R_CLONE16	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF906020	29R_CLONE18	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,96I,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF906021	29R_CLONE2	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120A,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF906022	29R_CLONE4	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF906023	29R_CLONE7	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,96I,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KF906024	29R_CLONE9	South Africa	05-May-2008	genomic RNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,96I,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G

Genbank References: capsid (p24)

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Team