<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Kijak (2016) Development and application of a high-throughput HIV type 1 genotyping assay to identify CRF02_AG in West/West Central Africa AIDS Res. Hum. Retroviruses 20 (5), 521-530 (2004) 3.59e-152 50 62 Naive PBMC Molecular clones Molecular epidemiology

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AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
AY37115901CM.0001BBYCameroongenomic DNAsample from Yaounde blood banksubtype: CRF01/A12316A,11I,15L,31G,33N,47T,50T,54M,58I,59I,71D,83M,87Q,91Y,92P,116A,120S,124V,148V,169F,178T,180D,200S,203R,207T,208G
AY37112201CM.0002BBYCameroongenomic DNAsample from Yaounde blood banksubtype: CRF02_AG12316A,11T,14S,15M,27I,54M,58I,71D,92P,120S,135V,148V,169F,177C,178T,180D,200S,203R,208G
AY37112301CM.0005BBYCameroongenomic DNAsample from Yaounde blood banksubtype: CRF02_AG12316A,13N,14P,15M,31G,54M,58I,71D,78V,83A,92P,115M,120S,148V,169F,200S,203R,207S,208G
AY37112401CM.0008BBYCameroongenomic DNAsample from Yaounde blood banksubtype: CRF02_AG12316A,27I,45D,54M,58I,71D,92P,120S,135V,148V,169F,171I,178T,203R
AY37115501CM.0009BBYCameroongenomic DNAsample from Yaounde blood banksubtype: D12316L,27I,33N,44A,83L,91V,115M,116A,118I,120G,124V,148V,208G,225S
AY37113101CM.0074NYCameroon: Nyabessanggenomic DNAhealthy adultsubtype: CRF02_AG12316A,11T,15M,27I,50T,54M,58I,71D,83L,87Q,91Y,92P,120G,128D,148V,169F,178T,183H,200S,207T,208G
AY37116701CM.0130NYCameroon: Nyabessanggenomic DNAhealthy adultsubtype: CRF01/A/F2/Unclassified12313M,6A,15L,31G,33N,54M,58I,71D,91Y,92P,120S,148V,169F,178T,180D,200S,207T,208G
AY37113701CM.0131NYCameroon: Nyabessanggenomic DNAhealthy adultsubtype: CRF02_AG12316A,11T,14N,15M,27I,54M,58I,68I,71D,79D,83T,87P,96I,98D,110N,112E,115V,116R,120S,128D,148V,169F,178T,183H,200S,207T,208G
AY37113201CM.0158NDCameroon: Ndikinimekgenomic DNAhealthy adultsubtype: CRF02_AG12316A,14S,15M,27I,31G,54M,58I,59I,71D,78I,83L,120S,128D,129L,148V,169F,178T,183S,200S,207T,208G,225S
AY37115601CM.0175BACameroon: Bangouraingenomic DNAhealthy adultsubtype: D12316L,27I,33N,83L,91V,120S,148V,178T,208G
AY37114901CM.0186NDCameroongenomic DNAsubtype: CRF11_cpx12316A,54M,58I,71D,83M,92P,120G,124V,131R,148V,169F,178T,183G,191I,200S,203R,207A,208G
AY37114501CM.0190MACameroon: Massangamgenomic DNAhealthy adultsubtype: CRF02/CRF01/A12316A,11T,12Y,14S,15M,27I,31G,54M,58I,71D,83I,86T,91Q,92Q,120S,148V,169F,178T,200S,207T,208G
AY37113301CM.0191NDCameroon: Ndikinimekgenomic DNAhealthy adultsubtype: CRF02_AG12316A,11T,26A,41T,54M,58V,71D,91A,92P,120S,135V,148V,169F,178T,200S,203R,208G,225S
AY37117001CM.0908MOCameroon: Moloundougenomic DNAhealthy adultsubtype: CRF01/A/D/F212316L,15L,27I,33N,41T,83L,116A,120S,124V,148V,180D,194S,208G
AY37113401CM.0925MOCameroon: Moloundougenomic DNAhealthy adultsubtype: CRF02_AG12316A,13N,14P,15M,27I,54M,58I,71D,83Q,86I,91F,92P,96L,110N,120S,148V,169F,171V,178T,200S,207T,208G
AY37116601CM.0989MOCameroon: Moloundougenomic DNAhealthy adultsubtype: A/G/Unclassified12313L,6A,12Y,14G,15L,50H,71D,86R,87Q,92P,93A,96I,100N,116R,120S,124V,148V,169F,178T,187D,200H,208G
AY37116301CM.1152NGCameroon: Ngovayanggenomic DNAhealthy adultsubtype: A12316G,15V,41T,54M,58I,71D,87Q,92P,96I,120S,124V,148V,169F,178T,180P,200S,203R,207A,208G
AY37113501CM.1188NGCameroon: Ngovayanggenomic DNAhealthy adultsubtype: CRF02_AG12316A,11T,14P,15M,16T,27I,41T,54M,58I,71D,80*,83T,86A,87Q,91F,92P,97K,120S,127R,137R,148V,169F,187D,200A,207T,208G,210S
AY37113601CM.1237NGCameroon: Ngovayanggenomic DNAhealthy adultsubtype: CRF02_AG12316A,11T,14S,15M,27I,41T,54M,58I,71D,92P,120S,124V,148V,169F,178T,187D,200S,208G
AY37116101CM.1278NGCameroon: Ngovayanggenomic DNAhealthy adultsubtype: A/J/H/Unclassified12316A,27I,41T,54M,58I,71D,72A,91N,92P,116A,118I,120G,148V,154K,169F,177G,178T,203R,208G
AY37116201CM.1296NGCameroon: Ngovayanggenomic DNAhealthy adultsubtype: A/J/H/Unclassified12316A,41T,54M,58I,71D,72A,91N,92P,116A,118I,120G,148V,154K,169F,177G,178T,203R,208G
AY37116401CM.1404MVCameroon: Mvangangenomic DNAhealthy adultcollected in 2001;subtype: A/F212316L,14S,27I,71D,116A,120S,124V,148V,169F,183G,187D,208G
AY37113801CM.1475MVCameroon: Mvangangenomic DNAhealthy adultsubtype: CRF02_AG12316A,11T,14S,15M,27I,47C,54M,58I,71D,83L,87Q,115V,116A,120G,128D,148V,169F,171A,178T,180D,200S,207S,208G
AY37116801CM.4008HANCameroon: Ndikinimekgenomic DNAhospitalized adultsubtype: A/D12316L,15L,27I,31G,33N,83L,116A,120S,148V,177C,178T,200S,208G
AY37115001CM.4041HANCameroon: Ndikinimekgenomic DNAhospitalized adultsubtype: CRF11_cpx12316A,15V,54M,58I,71D,83L,87Q,120S,131R,148V,154K,169F,178T,183G,187D,191I,200S,203R,208G
AY37112101CM.4049HANCameroon: Ndikinimekgenomic DNAhospitalized adultsubtype: G12316A,11I,16T,50S,71D,83L,86P,87Q,92P,96I,116R,120S,128D,148V,154K,169F,178T,183G,187D,208G,225S
AY37114201CM.4410HALCameroongenomic DNAsubtype: CRF02_AG12316A,14S,27I,33N,54M,58I,71D,83T,92P,107S,115V,120S,132K,148V,169F,178T,191I,203R,208G
AY37115701CM.4412HALCameroon: Lomiegenomic DNAhospitalized adultsubtype: D12316L,15L,27I,33N,83L,87Q,91V,120S,148V,178T,208G
AY37112502CM.0013BBYCameroongenomic DNAsample from Yaounde blood banksubtype: CRF02_AG12316A,11T,14N,27I,54M,58I,71D,83I,115V,120S,128D,148V,169F,178T,200S,207T,208G
AY37112602CM.0014BBYCameroongenomic DNAsample from Yaounde blood banksubtype: CRF02_AG12316A,11T,14P,15M,23*,27I,41T,54M,58I,71D,83T,92P,110N,120S,135V,148V,169F,178T,198Y,200S,203R,208G
AY37112702CM.0015BBYCameroongenomic DNAsample from Yaounde blood banksubtype: CRF02_AG12316A,11T,14N,15M,27I,41T,54M,58I,71D,83M,91N,92P,120S,148V,169F,178T,183R,200S,203R,208G,217S
AY37115802CM.0016BBYCameroongenomic DNAsample from Yaounde blood banksubtype: F212316L,27I,71D,83L,87Q,92P,96I,116A,120S,124V,148V,169F,178T,183G,187D,208G,230I
AY37114402CM.1590LECameroon: Lomiegenomic DNAhealthy adultsubtype: CRF02/CRF01/A/G12316A,23*,31G,33N,54M,58I,59M,71D,78T,80*,82K,87Q,91H,92P,95H,96I,116A,120H,143K,148V,156R,169F,178T,180D,200S,207T,208G,223R,229K
AY37113902CM.1669LECameroon: Lomiegenomic DNAhealthy adultsubtype: CRF02_AG12316A,11T,15L,26A,27I,41T,58V,71D,83L,92P,112A,115M,116A,118I,120G,148I,169F,178T,203R,208G
AY37114002CM.1677LECameroon: Lomiegenomic DNAhealthy adultsubtype: CRF02_AG12316A,15M,27I,54M,58I,71D,92P,110N,120S,148V,169F,178T,200S,203R,208G
AY37115202CM.1710LECameroon: Lomiegenomic DNAhealthy adultsubtype: CRF11_cpx12316A,27I,29K,51N,54I,58I,71N,75K,76K,80*,81N,83I,89E,92P,98K,106E,113K,117*,120G,124V,127E,132K,133*,137E,143K,148V,152N,154K,159K,162K,163N,166N,169F,175K,178T,180K,183G,184*,203R,208E,212K,213K,214I,215I,222E,223K,225S
AY37114802CM.1807LECameroon: Lomiegenomic DNAhealthy adultsubtype: CRF02/CRF01/D/F12316A,14S,15M,23*,27I,41T,54M,58I,60K,71D,80*,100K,116A,117*,118I,120G,135V,148V,154K,156R,169F,177G,178T,184*,187K,190M,200S,203R,208E,215I,223R,225S,229K
AY37116502CM.1867LECameroon: Lomiegenomic DNAhealthy adultsubtype: A/CRF0112316A,15V,31G,33N,54C,58I,71D,83I,91N,92P,116A,120S,148V,169F,178T,183H,200S,207T,208G
AY37114602CM.1901LECameroon: Lomiegenomic DNAhealthy adultsubtype: CRF02_AG12316A,14P,54M,58I,71D,72A,79D,83T,91V,110N,116A,120S,148V,169F,171A,178T,180D,200S,208G
AY37116902CM.1918LECameroon: Lomiegenomic DNAhealthy adultsubtype: A/G/Unclassified12316A,10P,11I,71D,83L,87Q,92P,96I,110N,116R,148V,169F,178T,183G,187D,203R,208G,210S
AY37112802CM.1970LECameroon: Lomiegenomic DNAhealthy adultsubtype: CRF02_AG12316A,10W,11T,15V,27I,43I,54M,58I,71D,83A,87Q,91F,92P,96L,120S,148V,169F,178T,203R,208G
AY37112902CM.2162SACameroon: Sobiagenomic DNAhealthy adultsubtype: CRF02_AG12316A,14S,15L,27I,31G,33N,54M,58I,71D,83I,91V,116A,118I,120G,148V,169F,178T,200S,203R,207A,208G,210S
AY37115102CM.2190SACameroon: Sobiagenomic DNAhealthy adultsubtype: CRF11_cpx12316A,15M,27I,29D,47S,54M,58I,71D,92P,104T,116A,120G,124V,128D,131R,148V,154K,169F,178T,191I,200S,203R,208G
AY37114302CM.2339SACameroon: Sobiagenomic DNAhealthy adultsubtype: complex recombinant12316A,11T,12Y,14S,15L,47S,54M,58V,71D,83L,92P,108S,116A,120G,123A,124V,128D,131R,154K,169F,171A,178T,180D,200S,207T,208G
AY37113002CM.2348SACameroon: Sobiagenomic DNAhealthy adultsubtype: CRF02_AG12316A,11I,14N,15M,27I,54M,58I,71D,79G,83T,115V,120S,148V,169F,178T,200A,207T,208G
AY37116002CM.3163MNCameroon: Manyamengenomic DNAhealthy adultsubtype: A/F212316L,27I,33N,71D,83L,87Q,91V,116A,120S,124V,148V,154K,169F,178T,183G,208G,210S,225S,230I
AY37115402CM.3226MNCameroon: Manyamengenomic DNAhealthy adultsubtype: CRF13_cpx12316A,41T,71D,83L,86L,87Q,92P,96I,116T,148V,154K,169F,178T,180D,187D,203R,208G
AY37114702CM.3228MNCameroon: Manyamengenomic DNAhealthy adultsubtype: CRF02/G12316A,11T,13V,14P,15M,16T,27I,31S,41T,54M,58I,71D,83Q,91A,92P,120G,135V,148V,169F,178T,200S,203R,208G
AY37114102CM.4082STNCameroongenomic DNAsubtype: CRF02_AG12316A,14S,15M,27I,41T,54M,58I,71D,92P,120S,124V,135V,148V,169F,178T,180D,203R,204G,208G
AY37115302CM.4118STNCameroon: Ndikinimekgenomic DNASTD clinic patientsubtype: CRF11_cpx12316A,15V,54M,58I,71D,83L,87Q,120S,131R,148V,154K,169F,178T,183G,187D,191I,200A,203R,208G

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