<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Heipertz (2016) Significant contribution of subtype G to HIV-1 genetic complexity in Nigeria identified by a newly developed subtyping assay specific for subtype G and CRF02_AG Medicine (Baltimore) 95 (32), E4346 (2016) 1.06e-146 42 42 Naive Plasma Direct PCR Molecular epidemiology

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AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
KX38963909NG010060Nigeria09-Sep-2009genomic RNAplasmagenotype: CRF02_AG12316A,11I,14S,15M,26A,27I,41T,54V,58I,71D,87Q,92P,120S,132K,135V,139H,144V,148V,160S,169F,178T,204G,208G
KX38963809NG010067Nigeria09-Sep-2009genomic RNAplasmagenotype: G/K recombinant12316A,14P,41T,71D,75D,83L,86P,87Q,91V,96I,98D,116A,120S,154K,169F,178T,180D,187D,203R,208G,225S
KX38963709NG010073Nigeria10-Sep-2009genomic RNAplasmagenotype: G/CRF02_AG12316A,11I,27I,41T,50G,71D,83M,86P,87Q,91L,92P,96I,116A,120S,148V,169F,178T,187D,200A,203R,208G,209P
KX38963609NG010079Nigeria10-Sep-2009genomic RNAplasmagenotype: G12316A,14P,41T,52M,71D,83L,86Q,87Q,91L,92P,96I,116T,148V,154K,169F,178T,180D,187D,200L,204G,207T,208G,225S
KX38963509NG010105Nigeria11-Sep-2009genomic RNAplasmagenotype: G/CRF02_AG12316A,14P,27I,41T,54L,71D,83I,86Q,87Q,96I,116A,120S,135V,148V,154K,169F,177G,178T,187D,207A,208G,225S
KX38963409NG010129Nigeria14-Sep-2009genomic RNAplasmagenotype: G/CRF02_AG12316A,11I,12Y,14S,15M,27I,31G,33N,41T,54M,58I,71D,83A,86A,87Q,91F,92P,110N,120S,124V,135V,169F,178T,180D,203R,208G
KX38963309NG010131Nigeria14-Sep-2009genomic RNAplasmagenotype: CRF11_cpx12316A,15V,27I,54M,58I,71D,78I,92P,96L,120S,124V,131R,148V,154K,169F,171A,180D,200S,203R,207A,208G,225S
KX38963209NG010145Nigeria15-Sep-2009genomic RNAplasmagenotype: G/CRF02_AG12316A,11I,27I,41T,50G,71D,83T,86P,87Q,91L,92P,96I,98D,116A,120S,148V,149G,154K,169F,178T,200S,203R,208G
KX38963109NG010157Nigeria16-Sep-2009genomic RNAplasmagenotype: G12316A,14P,41T,72S,75D,83L,86P,87Q,91F,92P,96I,116T,120S,148V,154K,169F,171A,178T,180D,200H,207T,208G,225S
KX38963009NG010170Nigeria17-Sep-2009genomic RNAplasmagenotype: CRF02_AG12316A,11T,14S,15M,41T,54M,58I,71D,87P,92P,120S,124V,135V,148V,169F,178T,180D,200S,203R,208G
KX38962909NG010181Nigeria17-Sep-2009genomic RNAplasmagenotype: CRF02_AG12316A,11T,15M,41T,54M,58I,71D,92P,120S,135V,148S,154K,169F,178T,187D,200S,203R,208G
KX38962809NG010205Nigeria23-Sep-2009genomic RNAplasmagenotype: G/CRF02_AG12316A,14S,15L,27I,41T,71D,83I,86Q,87Q,91L,92P,96L,98D,116A,128D,148V,154K,169F,178T,180D,183A,187D,203R,207A,208G,230I
KX38962709NG010208Nigeria24-Sep-2009genomic RNAplasmagenotype: G/CRF02_AG12316A,14S,27I,41T,71D,83L,86Q,87Q,96I,116T,148V,154K,169F,178T,180D,183A,187D,203R,207A,208G,230I
KX38962609NG010261Nigeria29-Sep-2009genomic RNAplasmagenotype: G12316A,14S,15L,27I,41T,71D,83L,86P,87Q,91M,92P,96I,116A,148V,154K,169F,180D,187D,203R,207A,208G,225S,230I
KX38962509NG010315Nigeria12-Oct-2009genomic RNAplasmagenotype: G12312L,6A,27I,31S,41T,71D,83L,86Q,87Q,92P,96I,116A,120G,123V,148V,154K,169F,178T,187D,203R,204G,207T,208G
KX38962409NG010325Nigeria12-Oct-2009genomic RNAplasmagenotype: CRF02_AG12316A,11I,15M,27I,54M,58I,71D,75D,92P,120S,135V,148V,154K,169F,177G,178T,203R,208G
KX38962309NG010483Nigeria22-Oct-2009genomic RNAplasmagenotype: G/CRF02_AG12316A,15M,26A,27I,41T,54M,58I,68I,71D,83I,92P,116A,120S,124V,128N,132G,148V,154K,169F,177G,178T,187D,191I,203R,204G,208G,225S
KX38962209NG010499Nigeria26-Oct-2009genomic RNAplasmagenotype: A12316A,27I,31G,33N,54M,58I,71D,83L,87Q,92P,96L,120G,128D,129L,148V,169F,178T,200N,203R,208G
KX38962110NG020065Nigeria14-Jan-2010genomic RNAplasmagenotype: CRF02_AG12316A,14S,15V,27I,50G,54M,58I,59I,71D,83Q,92P,120S,132K,148V,154K,169F,178T,180D,203R,208G,211I,217S,225S
KX38962010NG020133Nigeria22-Jan-2010genomic RNAplasmagenotype: G12316A,11M,15L,27I,41T,68I,71D,83L,86P,87Q,91L,92P,96I,108S,112P,115V,116T,120S,148V,169F,178T,187D,204S,207T,208G,225S
KX38961910NG020134Nigeria22-Jan-2010genomic RNAplasmagenotype: G12316A,71D,83I,86Q,87Q,96I,110N,116R,120S,148V,169F,178T,183G,187D,203R,208G,225S,230I
KX38961810NG020303Nigeria04-Feb-2010genomic RNAplasmagenotype: G12316A,14S,27I,41T,71D,75D,83I,86P,87Q,91V,96I,98D,116T,120S,146C,148V,154K,169F,180D,187D,207T,208G,225S
KX38961710NG020307Nigeria04-Feb-2010genomic RNAplasmagenotype: CRF02_AG12316A,14N,15M,27I,41T,54M,58I,71D,92P,120S,124V,135V,148V,154K,169F,178T,200S,203R,204G,208G,225S
KX38961610NG020382Nigeria09-Feb-2010genomic RNAplasmagenotype: CRF02_AG12316A,27I,33N,41T,54V,58I,71D,83A,91V,92P,120S,130HY,135V,148V,165I,169F,178T,203R,204S,208G
KX38961510NG020420Nigeria11-Feb-2010genomic RNAplasmagenotype: G/CRF02_AG12316A,27I,41T,71D,83M,86Q,87Q,91F,92P,116A,120S,124V,148V,154K,169F,178T,180D,187D,203R,207A,208G,225S
KX38961410NG020437Nigeria12-Feb-2010genomic RNAplasmagenotype: CRF02_AG12316A,10W,11T,16T,27I,41T,54M,58I,71D,87Q,92P,111I,120G,148V,169F,178T,187D,200S,203R,208G
KX38961310NG020468Nigeria16-Feb-2010genomic RNAplasmagenotype: G/CRF02_AG12316A,14S,15M,27I,41T,54M,58I,71D,91A,92Q,120S,135V,148V,149G,154K,169F,187D,190M,191I,200S,203R,208G
KX38961210NG020523Nigeria19-Feb-2010genomic RNAplasmagenotype: C12316L,15L,27I,36I,41T,71D,83L,86A,91V,98D,110N,116A,120G,124V,128D,148V,154K,169F,178T,180D,187D,191I,200I,204G,207T,208G,210S
KX38961110NG020545Nigeria22-Feb-2010genomic RNAplasmagenotype: CRF02/CRF0112316A,14S,27I,54M,58I,71D,83T,87Q,92P,115V,120G,124V,131R,148V,169F,178T,200S,203R,207A,208G
KX38961010NG030161Nigeria22-Apr-2010genomic RNAplasmagenotype: CRF02_AG12316A,14P,41T,54M,58I,71D,92P,120S,124V,135V,148V,149G,169F,178T,200S,203R,208G,225S
KX38960910NG030498Nigeria29-May-2010genomic RNAplasmagenotype: CRF06_cpx12316A,10P,11I,27I,54M,58I,71D,86I,91A,92P,120G,124V,148V,169F,178T,187D,208G,225S
KX38960810NG040248Nigeria13-Jul-2010genomic RNAplasmagenotype: A12316A,14P,15L,27I,31G,33N,54M,58I,59I,71D,83L,91V,92P,110N,120S,128D,129L,148V,169F,178T,203R,208G,210S
KX38964011NG050135Nigeria19-Jul-2011genomic RNAplasmagenotype: CRF02_AG12316A,11T,14S,15L,27I,31G,33K,41T,54M,58I,71D,83T,87Q,92P,110N,120S,148V,154K,169F,178T,200S,203R,207Q,208G
KX38964111NG050158Nigeria20-Jul-2011genomic RNAplasmagenotype: G12316A,14S,15L,27I,41T,71D,75D,83L,86P,87Q,91L,92P,96I,110N,112A,116A,120S,148V,154K,169F,178T,183G,187D,203R,207A,208G,230I
KX38964211NG050272Nigeria26-Jul-2011genomic RNAplasmagenotype: G12316A,71D,83M,86P,87Q,96I,98D,116R,120S,148V,169F,178T,183G,187D,203R,208G
KX38964311NG050356Nigeria29-Jul-2011genomic RNAplasmagenotype: CRF02_AG12316A,14P,15M,27I,31G,33N,41T,54M,58I,71D,83T,87Q,92P,96L,110N,115V,120S,135V,148V,154K,169F,178T,183G,200S,203R,207S,208G
KX38964411NG050366Nigeria01-Aug-2011genomic RNAplasmagenotype: CRF02_AG12316A,11T,14S,15M,27I,54M,58I,71D,92P,110N,120S,135V,148V,169F,180D,190M,200S,203R,225S
KX38964511NG050489Nigeria11-Aug-2011genomic RNAplasmagenotype: G12316A,27I,41T,71D,86Q,87Q,91V,96I,116A,120S,148V,154K,169F,178T,183G,187D,203R,208G,225S
KX38964612NG060248Nigeria06-Mar-2012genomic RNAplasmagenotype: G12316A,14P,27I,31S,41T,71D,83L,86P,87Q,92P,96I,98D,110N,116T,135V,148V,154K,169F,178T,180D,187D,203R,207A,208G,225S
KX38964712NG060304Nigeria08-Mar-2012genomic RNAplasmagenotype: CRF02_AG12316A,14S,15M,26A,27I,41T,54M,58I,71D,83L,92P,98D,120S,124V,135V,148V,169F,178T,183A,200S,203R,208G
KX38964812NG060409Nigeria19-Mar-2012genomic RNAplasmagenotype: G12316A,27I,41T,71D,83L,86P,87Q,92P,96I,110N,116T,118I,120G,136M,144L,148V,154K,162K,169F,178T,180D,187D,207A,208G,225S,230I
KX38964912NG060418Nigeria19-Mar-2012genomic RNAplasmagenotype: CRF02_AG12313M,6A,11T,12Y,15P,16T,27I,31G,41T,54M,58I,71D,75D,87Q,91L,92P,110N,120S,135V,141V,148V,169F,178T,203R,204G,208G,216I

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