<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Pace (2007) Population level analysis of human immunodeficiency virus type 1 hypermutation and its relationship with APOBEC3G and vif genetic variation J. Virol. 80 (18), 9259-9269 (2006) 1.37e-158 120 120 Uncertain PBMC Direct PCR Miscellaneous

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AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
EF178300MS2004-37_002Australiagenomic DNAART-naive;subtype: clade B12316L,14P,15L,18X,83M,96I,120H,148V,180D
EF178301MS2004-37_003Australiagenomic DNAART-naive;subtype: clade B12314QR,6L,13N,14P,20X,83L,91A,96L,107S,120S,136M,154K,225A
EF178302MS2004-37_004Australiagenomic DNAART-naive;subtype: clade B12316L,15L,18X,20*GLV,41T,80*W,83L,91V,100KR,107S,116A,118I,127GR,154K,184*,222GR
EF178303MS2004-37_005Australiagenomic DNAART-naive;subtype: clade B12316L,15L,27I,68I,83L,131R,148V,180D,199R
EF178304MS2004-37_006Australiagenomic DNAART-naive;subtype: clade B12316M,41T,83L,96MV,200N,208G,209AT,212EK,213EK
EF178305MS2004-37_007Australiagenomic DNAART-naive;subtype: clade B12316L,15L,21X,22AT,23CFLW,25KT,27I,29EG,30KN,33KNRS,35EV,38PT,41T,42AV,45DEHQ,49PT,51DN,53KN,54AT,55IMT,56IL,58KT,62DEHQ,63*QRW,65AG,67HQ,68MT,69V,70KQ,71AE,72AGST,73ILPT,75AE,76AEPQ,77AG,78AP,79EK,80RW,81DE,82PRT,83LMRW,84X,85PRT,87X,90PT,91A,92AG,93PT,94GV,96MV,98EV,100RW,101GR,102RST,103DGNS,104IKN,105AP,106GR,107IT,108PT,109GISV,110X,111LV,113DE,114KQ,115~,116~,117~,118~,119~,120~,121~,122~,123~,124~,125~,126~,127~,128~,129~,130~,131~,148V,165X,166N,167LR,173G,174P,176K,177P,180D,180D_VKRWDAGNFVGPKC*KPRL,181*IKL,183X,190LW,208G,225T
EF178306MS2004-37_008Australiagenomic DNAART-naive;subtype: clade B12316L,41T,83L,87Q,115V,120S,128D,148A
EF178307MS2004-37_009Australiagenomic DNAART-naive;subtype: clade B12316M,10KM,15L,27I,41T,53KN,57NT,58AT,59LV,63*LQ,64AT,65X,66MV,67QR,68KM,69*SY,83L,96L,110N,116A,120H,160S,208G,225S
EF178310MS2004-37_012Australiagenomic DNAART-naive;subtype: clade B12316L,83L,120H,180D,225S,230I
EF178311MS2004-37_013Australiagenomic DNAART-naive;subtype: clade B12316L,17X,41A,83L,91IV,110N,116A,132K,136MR,225CGRS
EF178312MS2004-37_014Australiagenomic DNAART-naive;subtype: clade B12316L,14P,17PR,72A,83T,120H,148V,180D
EF178313MS2004-37_015Australiagenomic DNAART-naive;subtype: clade B12313LMV,14P,83L,120H,128D,136M,178ST,225S,230I
EF178314MS2004-37_016Australiagenomic DNAART-naive;subtype: clade B12316M,15L,16T,18*GR,83L,91T,120S,148I,154K,178T,225S
EF178315MS2004-37_017Australiagenomic DNAART-naive;subtype: clade B12316L,20X,83L,194S,225S,230I
EF178316MS2004-37_018Australiagenomic DNAART-naive;subtype: clade B12316L,9A,12P,15L,27I,72P,73F,75G,76K,83L,87Q,91V,110N,116A,120H,148V
EF178317MS2004-37_019Australiagenomic DNAART-naive;subtype: clade B12316M,14P,18*GR,41T,83L,180D,207Q,208G
EF178318MS2004-37_020Australiagenomic DNAART-naive;subtype: clade B12316FILV,15IL,19PT,83L,110NT,116A,180D,225S
EF178319MS2004-37_021Australiagenomic DNAART-naive;subtype: clade B12316L,14P,17X,79D,83L,91IT,120S,178ST
EF178321MS2004-37_023Australiagenomic DNAART-naive;subtype: clade B12316V,14P,16A,41T,83L,87Q,91P,96L,116A,120H,128D,180D,203R
EF178322MS2004-37_024Australiagenomic DNAART-naive;subtype: clade B123118*GR,54I,83L,87Q,91V,148V,154K,170R,210S,225S
EF178323MS2004-37_025Australiagenomic DNAART-naive;subtype: clade B12316L,10S,18*GR,27I,80*W,83L,87P,91V,96LM,100K,110N,116A,120H,148V,178T,210S,225S
EF178324MS2004-37_026Australiagenomic DNAART-naive;subtype: clade B12316L,9R,10V,14P,15L,16T,27I,83T,120H,148V,178T,225S
EF178326MS2004-37_028Australiagenomic DNAART-naive;subtype: clade B12315T,6L,10IM,14AP,15L,23*W,26X,80*W,83L,120H,178ST,184*W,208G,213DE,222GR,225S
EF178327MS2004-37_029Australiagenomic DNAART-naive;subtype: clade B12316L,18X,41A,83L,91V,132K,136M
EF178328MS2004-37_030Australiagenomic DNAART-naive;subtype: clade B12316L,14P,15L,17X,83L
EF178329MS2004-37_031Australiagenomic DNAART-naive;subtype: clade B12311Y,3AV,4KQ,5NT,6FLPS,7X,15L,83L,120H,136M,208G
EF178330MS2004-37_032Australiagenomic DNAART-naive;subtype: clade B723141T,67H,68I,83L,101GV,104ILPT,107ST,109IS,110AT,111LV,112HQ,114HQR,115IT,116*CG,117RW,118EKMV,119PT,120IS,121DEKN,123AP,124IT,127AG,128ADE,130X,131EIKV,132GR,139IN,140IKN,141V,144IKMN,145NY,146GISV,147ALPV,148ST,151ILM,152DH,154RS,155HQ,156GV,157AP,158IKM,159EGKR,161FV,162PRT,163DE,164*DEY,165LV,166DY,170EIKV,171AT,173*ILR,174ADSY,176HPQ,177AV,178*S,179PQ,181ELQV,182KN,183NSTY,184*QRW,185EKMV,186IT,187EK,188NT,190LM,191AV,192EQ,193NT,194ALSV,195KN,196LP,197DEHQ,198CNSY,199EK,200H,201ILPT,202LV,203KN,204AEKT,205X,206X,207PS,208AT,210IMT,211GLRV,212AE,213AE,214IMV,215MT,216IT,225S
EF178331MS2004-37_033Australiagenomic DNAART-naive;subtype: clade B123114P,18*GR,91V,180D
EF178332MS2004-37_034Australiagenomic DNAART-naive;subtype: clade B12316L,14P,17PR,27I,79D,83L,148V,180D,225S,230I
EF178333MS2004-37_035Australiagenomic DNAART-naive;subtype: clade B12316L,14X,36I,41A,83L,120H,132K,136M,148I,154K,160S,178T,183T
EF178334MS2004-37_036Australiagenomic DNAART-naive;subtype: clade B123114P,20X,41X,44A
EF178336MS2004-37_038Australiagenomic DNAART-naive;subtype: clade B62316LMV,14P,41T,83L,120H,128D,148A,180D
EF178338MS2004-37_040Australiagenomic DNAART-naive;subtype: clade B22313GV,6L,7HQ,12FHLY,17HP,41A,51X,83L,91V,110N,116A,132K,136M
EF178339MS2004-37_041Australiagenomic DNAART-naive;subtype: clade B12316L,13X,14P,41A,83M,86P,87Q,96I,98D,116T,132K,136M,153*,154K,161V,170R,178T,183NT,194S,202F
EF178340MS2004-37_042Australiagenomic DNAART-naive;subtype: clade B52315I,14P,67HQ,83L,85LP,91V,194S,230I
EF178341MS2004-37_043Australiagenomic DNAART-naive;subtype: clade B12316M,18X
EF178343MS2004-37_045Australiagenomic DNAART-naive;subtype: clade B12316L,83L,91V,116N,120S,219HQ
EF178344MS2004-37_046Australiagenomic DNAART-naive;subtype: clade B12316L,14AP,15ILV,41A,83LV,116AG,120HN,132K,136M,183NT
EF178346MS2004-37_048Australiagenomic DNAART-naive;subtype: clade B12316L,12DHNY,15L,17PR,23*W,66LM,80*W,83L,91V,100KR,148V,156GR,180D,184*W
EF178347MS2004-37_049Australiagenomic DNAART-naive;subtype: clade B42314KQ,5NT,6FLPS,7KQR,9KQ,10*KLM,11X,12HILN,13KQR,14AP,15*FLY,16X,17LP,18KR,20*L,21IKMN,22AP,23*,24*ELV,26LV,27L,30EGKR,37IKN,39GMRV,41T,42AEPQ,43*,44*S,45K,46E,52FL,52FL_DGNS,53KN,54H,55A,56X,57HNRS,58H,59AV,60X,61GR,62DH,64AE,65ADE,66GMRV,67X,80*,83L,87Q,110N,116A,148V,154K,184*,208G,222E
EF178348MS2004-37_050Australiagenomic DNAART-naive;subtype: clade B12316M,18X,71DE,83L,118MT,120H,124IV,154K,170KR,171AITV,180D,208AG
EF178349MS2004-37_051Australiagenomic DNAART-naive;subtype: clade B12316M,31X,83LV,194AS,225S,230I
EF178350MS2004-37_052Australiagenomic DNAART-naive;subtype: clade B12318R,10I,23*,29K,46R,51N,60R,68X,69X,70X,71V,80*,82K,83L,89R,100K,101R,113K,116R,117*,127R,133*,137R,148A,156R,167Q,184*,206R,222R,223R,225S
EF178351MS2004-37_053Australiagenomic DNAART-naive;subtype: clade B12312IT,3IMV,6IM,23*W,83L,91P,96L,154K,178T,225S
EF178352MS2004-37_054Australiagenomic DNAART-naive;subtype: clade B12315DHNY,6M,27I,43X,75D,83L,86A,87Q,120S,154K,225S
EF178353MS2004-37_055Australiagenomic DNAART-naive;subtype: clade B12316L,9*EKQ,41A,83L,120H,132K,136M,183S,199KR
EF178354MS2004-37_056Australiagenomic DNAART-naive;subtype: clade B12316L,14P,15L,16T,18KR,19X,27I,30KR,83T,120H,148V,178T,225S
EF178355MS2004-37_057Australiagenomic DNAART-naive;subtype: clade B12316M,27I,75D,83L,154K,177C,178T,225S
EF178357MS2004-37_059Australiagenomic DNAART-naive;subtype: clade B12316LM,68IM,75DE,83L,120HNRS,183NS,230IV
EF178358MS2004-37_060Australiagenomic DNAART-naive;subtype: clade B12316L,44A,71D,83L,110N,120H,154K,180D,225S,230I
EF178359MS2004-37_061Australiagenomic DNAART-naive;subtype: clade B12316L,225A
EF178360MS2004-37_062Australiagenomic DNAART-naive;subtype: clade B12316L,15L,67HQ,83L,120H,154K,160PS,208G,213D
EF178361MS2004-37_063Australiagenomic DNAART-naive;subtype: clade B12316L,10A,15L,18*GR,91V,153IT,154K
EF178362MS2004-37_064Australiagenomic DNAART-naive;subtype: clade B12316L,15L,41A,83L,120H,132K,136M,148A,154K,225S
EF178363MS2004-37_065Australiagenomic DNAART-naive;subtype: clade B12316L,23*W,29*EKQ,83L,189LS
EF178364MS2004-37_066Australiagenomic DNAART-naive;subtype: clade B12316M,14P,37X,60EG,62HY,83M,148V,225S
EF178365MS2004-37_067Australiagenomic DNAART-naive;subtype: clade B12316L,75D,83L,180D
EF178366MS2004-37_068Australiagenomic DNAART-naive;subtype: clade B12316M,11X,17PR,83L,120H
EF178367MS2004-37_069Australiagenomic DNAART-naive;subtype: clade B12316L,14P,15L,83M,120H,148V,180D,225S
EF178368MS2004-37_070Australiagenomic DNAART-naive;subtype: clade B12316LMRW,10MR,11LV,15IL,21KN,23GW,27I,31AV,35EK,57NT,67X,83L,91IV,148IV,178IT,179PQ,225GS,230I
EF178369MS2004-37_071Australiagenomic DNAART-naive;subtype: clade B12315I,11A,21X,83L,91N,92P,177AV,188IT,208G
EF178370MS2004-37_072Australiagenomic DNAART-naive;subtype: clade B12316L,14P,15L,41T,50H,51T,52F,53*,54X,55X,56X,57X,58X,59X,60X,61X,62X,63X,64X,65X,66X,67X,68X,69X,70X,71V,83L,87Q,91V,120G,122Q,154K,180D,194S,225S
EF178371MS2004-37_073Australiagenomic DNAART-naive;subtype: clade B123127I,28*EKQ,29K,39V,83T,98DE,120H,148V
EF178372MS2004-37_074Australiagenomic DNAART-naive;subtype: clade B12316M,20LV,27I,75D,83L,86P,87Q,120S,154K,225S
EF178374MS2004-37_076Australiagenomic DNAART-naive;subtype: clade B12316L,14P,21DHNY,41A,54L,83M,91V,120H,132K,170R,225S
EF178375MS2004-37_077Australiagenomic DNAART-naive;subtype: clade B12313M,4PQ,6L,9X,13HQ,14P,18KR,28EK,33ST,35EK,39MR,42AP,44A,46EG,50HQ,67X,83L,116A,123AP,148V,188ST,208AG,210KNT,216AT
EF178376MS2004-37_078Australiagenomic DNAART-naive;subtype: clade B123114P,41A,83L,91IV,116A,132K,136M,225GS
EF178377MS2004-37_079Australiagenomic DNAART-naive;subtype: clade B12312IL,6L,80*W,83L,206GR,229KR
EF178379MS2004-37_081Australiagenomic DNAART-naive;subtype: clade B12316L,10LMV,17PR,27I,41T,75D,83L,87Q,91V,120S,154K,194S
EF178381MS2004-37_083Australiagenomic DNAART-naive;subtype: clade B12316L,14P,27I,68X,69X,70X,71V,79D,83L,148V,180D,225S
EF178382MS2004-37_084Australiagenomic DNAART-naive;subtype: clade B12313I,4H,5IRS,6AV,8P,41A,83L,120H,132K,136M,183S
EF178383MS2004-37_085Australiagenomic DNAART-naive;subtype: clade B12316L,15L,18*GR,41T,71DE,83L,87Q,91V,96I,98D,116A,120H,148S,154K,180D,208G,225S
EF178385MS2004-37_087Australiagenomic DNAART-naive;subtype: clade B123114P,71D,83L,116A,128D,180D
EF178386MS2004-37_088Australiagenomic DNAART-naive;subtype: clade B12316L,91IV,154K,178T
EF178387MS2004-37_089Australiagenomic DNAART-naive;subtype: clade B12316M,14P,17X,41T,91IV,120CS,148V,180D,208G
EF178388MS2004-37_090Australiagenomic DNAART-naive;subtype: clade B12315X,6L,83L,120H,128D,136I
EF178389MS2004-37_091Australiagenomic DNAART-naive;subtype: clade B12316L,14P,15L,23*W,28EK,68IM,83L,110N,120H
EF178390MS2004-37_092Australiagenomic DNAART-naive;subtype: clade B12314P,6L,7P,9P,14P,15ILV,17PR,44AS,50X,54I,76G,77G,116A,131R,154K,171V,194S,225S
EF178391MS2004-37_093Australiagenomic DNAART-naive;subtype: clade B12316L,32X,68I,83L,120HN,128D,204AV,216A
EF178392MS2004-37_094Australiagenomic DNAART-naive;subtype: clade B12313GV,5NT,6L,10MR,15M,18KR,19IT,24EV,27IK,28EK,30KR,35EK,36EV,45EK,50HQ,51DE,83L,86A,87Q,91V,96L,116A,120H,154K,178T
EF178393MS2004-37_095Australiagenomic DNAART-naive;subtype: clade B12316L,15L,27I,83L,110N,120H,148V,225S
EF178394MS2004-37_096Australiagenomic DNAART-naive;subtype: clade B12316L,14P,15L,17APST,41T,83L,86A,87Q,91V,96I,98D,116A,120H,124V,128DE,180D,225S,230I
EF178395MS2004-37_097Australiagenomic DNAART-naive;subtype: clade B123115L,23*,29K,41A,45X,46X,47X,48X,49X,50X,51X,52X,53X,54X,55X,56X,57X,58X,59X,60X,61X,62X,63X,64X,65X,66X,67X,68X,69X,70X,71V,80*,83T,98EK,100KR,116A,117*,120S,124T,127GR,128EK,133*,143K,148V,156GR,162KR,167QR,173KR,175EK,180D,184*,206GR,220GR,222GR,223GR,225S
EF178396MS2004-37_098Australiagenomic DNAART-naive;subtype: clade B12316L,10LMV,15L,17PR,83L,120H,180D,208G
EF178397MS2004-37_099Australiagenomic DNAART-naive;subtype: clade B12316L,15L,17X,83L,116A,148V,180D,230IV
EF178398MS2004-37_100Australiagenomic DNAART-naive;subtype: clade B12316L,10LMV,14AP,41A,54L,83M,91IV,116AG,120H,124IV,128DE,132K,136IM,154K,170KR,171AITV,180D,225S
EF178399MS2004-37_101Australiagenomic DNAART-naive;subtype: clade B12316L,19APST,71DE,83L,86P,87Q,96I,116T,120S,126IV,199KR
EF178401MS2004-37_103Australiagenomic DNAART-naive;subtype: clade B12313LV,6L,14P,15M,44A,83L,116A,120H,180D,198CG,208G
EF178402MS2004-37_104Australiagenomic DNAART-naive;subtype: clade B12312L,6FILV,27I,83L,87Q,91V,148V,183H
EF178403MS2004-37_105Australiagenomic DNAART-naive;subtype: clade B12316L,9X,14P,50S,54IL,83L,128D,180D,225GS
EF178404MS2004-37_106Australiagenomic DNAART-naive;subtype: clade B12316L,33N,41A,80*,83L,132K,152E
EF178405MS2004-37_107Australiagenomic DNAART-naive;subtype: clade B12316L,83L
EF178406MS2004-37_108Australiagenomic DNAART-naive;subtype: clade B12316M,17APST,83L
EF178407MS2004-37_109Australiagenomic DNAART-naive;subtype: clade B123118K,83L,91V,98K,154K,180K,212K,222R,230I
EF178408MS2004-37_110Australiagenomic DNAART-naive;subtype: clade B12318R,9X,10LMV,83L,178T
EF178409MS2004-37_111Australiagenomic DNAART-naive;subtype: clade B12316L,17PR,27I,83L,87P,91V,120H,208G,213D
EF178410MS2004-37_112Australiagenomic DNAART-naive;subtype: clade B12316L,15L,27I,41T,83L,91A,116A,120S,148V,180D,225S
EF178411MS2004-37_113Australiagenomic DNAART-naive;subtype: clade B12316L,14P,15L,27I,83I,148V,225GS,229KR
EF178412MS2004-37_114Australiagenomic DNAART-naive;subtype: clade B12316L,65AV,67X,91IV,154K,171V,194S,208AG
EF178413MS2004-37_115Australiagenomic DNAART-naive;subtype: clade B12314P,6L,7X,91V,154K,178ST
EF178414MS2004-37_116Australiagenomic DNAART-naive;subtype: clade B12316L,7X,14P,27I,120H,128D,154K,178T,225S
EF178416MS2004-37_118Australiagenomic DNAART-naive;subtype: clade B12316L,23*,30X,60R,80*,83L,89R,100K,116R,117*,167Q,184*,206R,222R
EF178417MS2004-37_119Australiagenomic DNAART-naive;subtype: clade B12316L,14X,17PR,27I,83L,86A,87Q,91F,92P,96I,116T,208G
EF178418MS2004-37_120Australiagenomic DNAART-naive;subtype: clade B12316L,15L,17X,41T,83L,87Q,91V,136M,154K,180D,187D
EF178419MS2004-37_121Australiagenomic DNAART-naive;subtype: clade B12316M,15L,18*GR,41A,75D,83L,116A,124IT
EF178420MS2004-37_122Australiagenomic DNAART-naive;subtype: clade B12316L,14P,15M,16A,21DHNY,41I,83L,87Q,90LP,110N,132K,135V,154K
EF178421MS2004-37_123Australiagenomic DNAART-naive;subtype: clade B12316L,14P,18*GR,79D,83L,154K,178T
EF178422MS2004-37_124Australiagenomic DNAART-naive;subtype: clade B123114P,83L,91V,194S,230I
EF178423MS2004-37_125Australiagenomic DNAART-naive;subtype: clade B12316L,7X,83LV,91V,148IT
EF178425MS2004-37_127Australiagenomic DNAART-naive;subtype: clade B1023110MV,11X,12HQ,13AGPR,14AV,15ILST,16PS,17PT,18KNRS,19X,20X,21X,22X,23*GW,24EIKV,25EIKV,27IV,30X,31AFSV,32FS,33PT,36LV,37FLPS,38~,39ILPT,40LW,41LP,42X,44X,83AMTV,91IV,116AG,194S,208G,213DE
EF178426MS2004-37_128Australiagenomic DNAART-naive;subtype: clade B12315X,14P,23*W,91V,180D,225S
EF178427MS2004-37_129Australiagenomic DNAART-naive;subtype: clade B12316L,8GR,10IM,14AP,17X,41A,83L,116AG,132K,136M,149NS,170KR,194S
EF178428MS2004-37_130Australiagenomic DNAART-naive;subtype: clade B12315S,6L,18MR,83L
EF178429MS2004-37_131Australiagenomic DNAART-naive;subtype: clade B12316L,8GR,10IM,18*GR,83L
EF178430MS2004-37_132Australiagenomic DNAART-naive;subtype: clade B12316M,28K,46R,53KN,54X,55X,56X,57X,58X,59X,60X,61X,62X,63X,64X,65X,66X,67X,68X,69X,70X,71V,72AT,81N,82K,83L,84HP,90AP,96IM,97EK,101K,116E,117*,132K,133*,137E,152N,156E,159K,162K,166N,180K,184*,190LV,206K,212K,213K,214I,215I,220E,221GV,222EK,223DEKN,225ST,229KR
EF178431MS2004-37_133Australiagenomic DNAART-naive;subtype: clade B12316L,8GR,10IM,23*W,83L,188IT
EF178432MS2004-37_134Australiagenomic DNAART-naive;subtype: clade B12316L,8GR,10IM,14P,15ILV,17PR,54I,79D,83IT,91V,180D,225S
EF178433MS2004-37_135Australiagenomic DNAART-naive;subtype: clade B12316L,41T,83L,87Q,115V,120S,128D,148A
EF178434MS2004-37_136Australiagenomic DNAART-naive;subtype: clade B22313X,5KN,6L,7QR,14AP,15L,35EG,46EG,50HQ,52FL,57NT,66GR,67X,91V,120H,162KR,187EK,194S,208G

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