Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
McCutchan (2016)	In-depth analysis of a heterosexually acquired human immunodeficiency virus type 1 superinfection: evolution, temporal fluctuation, and intercompartment dynamics from the seronegative window period through 30 months postinfection	J. Virol. 79 (18), 11693-11704 (2005)	2e-153	112	1	Naive	PBMC	Molecular clones	Acute infection

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Accession	IsolateName	Country	Clone	MolType	Source	Note	FirstAA	LastAA	MutList
AY887175	01TZ_HS123.1g19	Tanzania: Mbeya	19, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887176	01TZ_HS123.1g2	Tanzania: Mbeya	2, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887177	01TZ_HS123.1g21	Tanzania: Mbeya	21, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887178	01TZ_HS123.1g23	Tanzania: Mbeya	23, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,75G,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887179	01TZ_HS123.1g25	Tanzania: Mbeya	25, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,203E,208G,225S,230I
AY887180	01TZ_HS123.1g26	Tanzania: Mbeya	26, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,75G,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887181	01TZ_HS123.1g27	Tanzania: Mbeya	27, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887182	01TZ_HS123.1g28	Tanzania: Mbeya	28, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887183	01TZ_HS123.1g29	Tanzania: Mbeya	29, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,124T,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887184	01TZ_HS123.1g34	Tanzania: Mbeya	34, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887185	01TZ_HS123.1g35	Tanzania: Mbeya	35, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887186	01TZ_HS123.1g36	Tanzania: Mbeya	36, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887187	01TZ_HS123.1g4	Tanzania: Mbeya	4, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,75G,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887188	01TZ_HS123.1g41	Tanzania: Mbeya	41, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887189	01TZ_HS123.1g45	Tanzania: Mbeya	45, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887193	01TZ_HS123.1g50	Tanzania: Mbeya	50, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887192	01TZ_HS123.1g51	Tanzania: Mbeya	51, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887194	01TZ_HS123.1g52	Tanzania: Mbeya	52, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,40L,54M,58V,71D,83L,87Q,92P,96I,107A,111P,116Q,120G,128D,148V,154K,169F,178T,179L,198W,200S,208G,225S,230I
AY887195	01TZ_HS123.1g53	Tanzania: Mbeya	53, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887196	01TZ_HS123.1g54	Tanzania: Mbeya	54, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887190	01TZ_HS123.1g7	Tanzania: Mbeya	7, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,135T,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887191	01TZ_HS123.1g8	Tanzania: Mbeya	8, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887197	01TZ_HS123.2g1	Tanzania: Mbeya	1, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887198	01TZ_HS123.2g10	Tanzania: Mbeya	10, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887199	01TZ_HS123.2g11	Tanzania: Mbeya	11, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,79D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887200	01TZ_HS123.2g12	Tanzania: Mbeya	12, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,12Y,14S,15L,27I,29D,54M,58V,66T,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887201	01TZ_HS123.2g16	Tanzania: Mbeya	16, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887202	01TZ_HS123.2g17	Tanzania: Mbeya	17, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887203	01TZ_HS123.2g18	Tanzania: Mbeya	18, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887204	01TZ_HS123.2g2	Tanzania: Mbeya	2, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887205	01TZ_HS123.2g21	Tanzania: Mbeya	21, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887206	01TZ_HS123.2g22	Tanzania: Mbeya	22, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887207	01TZ_HS123.2g24	Tanzania: Mbeya	24, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,198R,200S,208G,225S,230I
AY887208	01TZ_HS123.2g25	Tanzania: Mbeya	25, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887209	01TZ_HS123.2g28	Tanzania: Mbeya	28, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887210	01TZ_HS123.2g29	Tanzania: Mbeya	29, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,44L,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225N,230I
AY887211	01TZ_HS123.2g31	Tanzania: Mbeya	31, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887212	01TZ_HS123.2g32	Tanzania: Mbeya	32, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887213	01TZ_HS123.2g33	Tanzania: Mbeya	33, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887214	01TZ_HS123.2g34	Tanzania: Mbeya	34, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887215	01TZ_HS123.2g37	Tanzania: Mbeya	37, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887216	01TZ_HS123.2g4	Tanzania: Mbeya	4, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887217	01TZ_HS123.2g5	Tanzania: Mbeya	5, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887218	01TZ_HS123.2g6	Tanzania: Mbeya	6, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887219	01TZ_HS123.2g7	Tanzania: Mbeya	7, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887220	01TZ_HS123.2g9	Tanzania: Mbeya	9, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887264	01TZ_HS123.3g13	Tanzania: Mbeya	13, form V	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12L,14N,15L,27I,54M,58I,71D,83L,92P,111P,115L,116Q,120G,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G,210S
AY887254	01TZ_HS123.3g14	Tanzania: Mbeya	14, form II	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,65D,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,192P,200S,208G,225S,230I
AY887265	01TZ_HS123.3g16	Tanzania: Mbeya	16, form V	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12L,14N,15L,27I,54M,58I,71D,83L,92P,111P,115L,116Q,120G,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G
AY887256	01TZ_HS123.3g18	Tanzania: Mbeya	18, form III	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12L,14N,15L,27I,54M,58I,71D,83L,87Q,92P,95R,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887255	01TZ_HS123.3g19	Tanzania: Mbeya	19, form II	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,65D,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887221	01TZ_HS123.3g20	Tanzania: Mbeya	20, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887222	01TZ_HS123.3g26	Tanzania: Mbeya	26, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,41A,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887283	01TZ_HS123.3g27	Tanzania: Mbeya	27, form VII	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,111P,115L,116Q,120G,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G,210S
AY887266	01TZ_HS123.3g28	Tanzania: Mbeya	28, form V	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12L,14N,15L,27I,54M,58I,71D,83L,92P,111P,115L,116Q,120G,128D,148V,154K,169F,170Q,178T,183G,188P,200S,203R,207S,208G,210S
AY887262	01TZ_HS123.3g29	Tanzania: Mbeya	29, form IV	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12Y,14S,15L,27I,29D,54M,58V,71G,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887267	01TZ_HS123.3g34	Tanzania: Mbeya	34, form V	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12L,14N,15L,27I,54M,58I,71D,83L,92P,111P,115L,116Q,120G,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G
AY887268	01TZ_HS123.3g35	Tanzania: Mbeya	35, form V	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12L,14N,15L,27I,54M,58I,65D,71D,83L,92P,111P,115L,116Q,120G,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G
AY887223	01TZ_HS123.3g37	Tanzania: Mbeya	37, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,8R,11I,12Y,14S,15L,23,27I,29D,54M,58V,60E,71D,80,83L,87Q,92P,96I,100K,111P,116Q,120G,127E,128D,133,148V,154K,156R,169F,178T,179L,184,200S,206R,208G,225S,229K,230I
AY887257	01TZ_HS123.3g40	Tanzania: Mbeya	40, form III	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12L,14N,15L,27I,29D,54M,58V,71D,80*,82K,83L,87Q,89R,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887263	01TZ_HS123.3g42	Tanzania: Mbeya	42, form IV	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887269	01TZ_HS123.3g44	Tanzania: Mbeya	44, form V	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12L,14N,15L,27I,54M,58I,71D,83L,92P,111P,115L,116Q,120G,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G
AY887224	01TZ_HS123.3g45	Tanzania: Mbeya	45, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887225	01TZ_HS123.3g5	Tanzania: Mbeya	5, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887270	01TZ_HS123.3g6	Tanzania: Mbeya	6, form V	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12L,14N,15L,27I,54M,58I,71D,83L,92P,111P,115L,116Q,120G,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G
AY887271	01TZ_HS123.3g7	Tanzania: Mbeya	7, form V	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12L,14N,15L,27I,54M,58I,71D,83L,92P,111P,115L,116Q,120G,128D,148V,154K,169F,171A,178T,183G,200S,203R,207S,208G,210S
AY887274	01TZ_HS123.4g1	Tanzania: Mbeya	1, form V	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12L,14N,15L,27I,54M,58I,71D,83L,92P,111P,115L,116Q,120G,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G,210S
AY887240	01TZ_HS123.4g10	Tanzania: Mbeya	10, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,121S,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887236	01TZ_HS123.4g11	Tanzania: Mbeya	11, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,23*,27I,29D,54M,58V,71D,83L,87Q,92P,96I,106R,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887285	01TZ_HS123.4g12	Tanzania: Mbeya	12, form VII	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12Y,14S,15L,27I,29D,54M,55I,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G
AY887237	01TZ_HS123.4g13	Tanzania: Mbeya	13, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,10T,12Y,14S,15L,27I,29D,54M,58V,71D,80R,83L,87Q,92P,96I,111P,115M,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887238	01TZ_HS123.4g14	Tanzania: Mbeya	14, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,23,27I,29D,54M,58V,71D,80,83L,87Q,92P,96I,111P,116Q,118I,120G,127E,128D,133,148V,154K,156R,169F,178T,179L,184,200S,208E,225S,230I
AY887239	01TZ_HS123.4g15	Tanzania: Mbeya	15, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,12Y,14N,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887286	01TZ_HS123.4g17	Tanzania: Mbeya	17, form VII	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12Y,14S,15L,27I,29D,54M,55I,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G
AY887227	01TZ_HS123.4g18	Tanzania: Mbeya	18, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,12Y,14S,15L,23,27I,29D,54M,58V,71D,80,83L,87Q,92P,96I,111P,116Q,120G,128D,133,148V,154K,169F,178T,179L,184,200S,208E,222R,223R,225S,229K,230I
AY887228	01TZ_HS123.4g19	Tanzania: Mbeya	19, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887229	01TZ_HS123.4g20	Tanzania: Mbeya	20, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,221A,225S,230I
AY887230	01TZ_HS123.4g21	Tanzania: Mbeya	21, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887231	01TZ_HS123.4g22	Tanzania: Mbeya	22, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,153M,154K,169F,178T,179L,200S,208G,225S,230I
AY887272	01TZ_HS123.4g23	Tanzania: Mbeya	23, form V	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12L,14N,15L,27I,54M,58I,71D,83L,92P,111P,115L,116Q,120G,128D,148V,154K,156E,169F,178T,183G,200S,203R,207S,208G,210S
AY887232	01TZ_HS123.4g24	Tanzania: Mbeya	24, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,12Y,14S,15L,23,27I,29D,54M,58V,71D,80,83L,87Q,92P,96I,111P,116Q,120G,128D,133,148V,154K,169F,178T,179L,184,200S,208E,222R,223R,225S,229K,230I
AY887258	01TZ_HS123.4g3	Tanzania: Mbeya	3, form III	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12L,14N,15L,27I,54M,58I,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887233	01TZ_HS123.4g4	Tanzania: Mbeya	4, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887284	01TZ_HS123.4g5	Tanzania: Mbeya	5, form VII	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,11I,12Y,14S,15L,23,27I,29D,54M,58V,71D,80,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G,210S
AY887273	01TZ_HS123.4g6	Tanzania: Mbeya	6, form V	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12L,14N,15L,27I,54M,58I,71D,83L,92P,111P,115L,116Q,120G,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G,210S
AY887234	01TZ_HS123.4g7	Tanzania: Mbeya	7, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,147S,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887235	01TZ_HS123.4g8	Tanzania: Mbeya	8, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887226	01TZ_HS123.4g9	Tanzania: Mbeya	9, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,221A,225S,230I
AY887259	02TZ_HS123.7g10	Tanzania: Mbeya	10, form III	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12L,14N,15L,27I,54M,58V,71D,76K,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,204V,208G,225S,230I
AY887253	02TZ_HS123.7g11	Tanzania: Mbeya	11, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,145H,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887241	02TZ_HS123.7g12	Tanzania: Mbeya	12, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887244	02TZ_HS123.7g13	Tanzania: Mbeya	13, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887245	02TZ_HS123.7g14	Tanzania: Mbeya	14, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,90S,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,180G,200S,208G,225S,230I
AY887246	02TZ_HS123.7g15	Tanzania: Mbeya	15, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887260	02TZ_HS123.7g18	Tanzania: Mbeya	18, form III	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	4P,6A,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,107I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887247	02TZ_HS123.7g19	Tanzania: Mbeya	19, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,8R,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887243	02TZ_HS123.7g20	Tanzania: Mbeya	20, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,162G,169F,178T,179L,200S,208G,225S,230I
AY887275	02TZ_HS123.7g21	Tanzania: Mbeya	10, form V	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12L,14N,15L,27I,54M,58I,71D,83L,92P,111P,115L,116Q,120G,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G,210S
AY887282	02TZ_HS123.7g23	Tanzania: Mbeya	23, form VI	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12L,14N,15L,27I,54M,58I,71D,83L,92P,111P,115L,116Q,120G,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G
AY887242	02TZ_HS123.7g24	Tanzania: Mbeya	24, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S
AY887248	02TZ_HS123.7g26	Tanzania: Mbeya	26, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,117*,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887277	02TZ_HS123.7g28	Tanzania: Mbeya	28, form V	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12L,14N,15L,27I,54M,58I,71D,83L,92P,111P,115L,116Q,120G,128G,148V,154K,169F,178T,183G,184*,200S,203R,206R,207S,208E,210S,225S,229K
AY887252	02TZ_HS123.7g29	Tanzania: Mbeya	29, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887278	02TZ_HS123.7g3	Tanzania: Mbeya	3, form V	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12L,14N,15L,27I,54M,58I,71D,83L,92P,111P,115L,116Q,120G,128G,148V,154K,169F,178T,183G,184*,200S,203R,206R,207S,208E,210S,225S,229K
AY887279	02TZ_HS123.7g30	Tanzania: Mbeya	30, form V	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12L,14N,15L,27I,54M,58I,71D,83L,92P,111P,115L,116Q,120S,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G
AY887280	02TZ_HS123.7g31	Tanzania: Mbeya	31, form V	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12L,14N,15L,27I,54M,58I,71D,83L,92P,111P,115L,116Q,120S,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G
AY887281	02TZ_HS123.7g32	Tanzania: Mbeya	32, form V	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12L,14N,15L,27I,54M,58I,71D,83L,92P,111P,115L,116Q,120G,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G,210S
AY887250	02TZ_HS123.7g33	Tanzania: Mbeya	33, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887251	02TZ_HS123.7g34	Tanzania: Mbeya	34, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887261	02TZ_HS123.7g5	Tanzania: Mbeya	5, form III	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: AC	1	231	6A,12L,14N,15L,27I,54M,58I,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY887249	02TZ_HS123.7g6	Tanzania: Mbeya	6, form I	genomic DNA	patient HS123; HIV seroconverter withsuperinfection; PBMC	subtype: A	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I
AY945709	HS123	Tanzania: Mbeya		genomic DNA	PBMC	subtype: ACD	1	231	6A,11I,12Y,14S,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111P,116Q,120G,128D,148V,154K,169F,178T,179L,200S,208G,225S,230I

Genbank References: capsid (p24)

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