Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Berg (2016)	A PAN-HIV STRATEGY FOR COMPLETE GENOME SEQUENCING	J. Clin. Microbiol. (2015) In press	6.34e-153	56	56	Uncertain	Cultured Plasma; PBMC	Uncertain	Molecular epidemiology

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Accession	IsolateName	Country	Coll Date	MolType	Source	Note	FirstAA	LastAA	MutList
KU168303	CM10-10	Cameroon	2003	genomic RNA	plasma	subtype: CRF02_AG; genotype: M	1	231	6A,11T,14N,15L,27I,31G,33N,58I,71D,92P,115M,120S,148I,154K,169F,178T,200S,203R,207A,208G
KU168310	CM100-17	Cameroon	03-Nov-2007	genomic RNA	plasma	subtype: CRF02_AG; genotype: M	1	231	6A,10W,11T,14N,27I,54M,58I,71D,83T,91V,128D,148V,169F,178T,200S,203R,208G
KU168307	CM1031-19	Cameroon	26-May-2008	genomic RNA	plasma	subtype: CRF02_AG; genotype: M	1	231	6A,11T,14N,26A,27I,54M,58I,71D,83I,87Q,92P,96I,116R,120S,128D,148V,154K,169F,177G,178T,190M,200S,207T,208G
KU168304	CM1193-8	Cameroon	2003	genomic RNA	plasma	subtype: CRF02_AG; genotype: M	1	231	6A,11T,14S,15M,27I,54M,58I,71D,83M,120S,148V,169F,178T,191I,200S,207T,208G,230I
KU168302	CM44-10	Cameroon	2003	genomic RNA	plasma	subtype: G; genotype: M	1	231	6A,14P,71D,83I,86P,87Q,96I,98D,116R,120S,148V,169F,178T,180D,203R,210S
KU168305	CM54-7	Cameroon	2003	genomic RNA	plasma	subtype: A1; genotype: M	1	231	6A,11I,14S,15L,26A,27I,30R,36I,47C,54M,58I,71D,83L,92P,111P,120G,128D,148V,154K,169F,171C,178T,183G,200S,203R,207T,208G
KU168306	CM62-15	Cameroon	2003	genomic RNA	plasma	subtype: G; genotype: M	1	231	6A,14S,71D,83M,86P,87Q,96I,98D,116T,120S,148V,154K,169F,178T,183G,187D,203R,208G
KU168311	CMN05-5	Cameroon		genomic RNA	plasma	subtype: U; genotype: M	1	231	6A,11I,14S,15L,27I,31G,33N,47C,54M,58I,71D,83L,91A,92P,120S,128D,148V,154K,169F,178T,200S,207T,208G
KU168256	LA01AlPr	Democratic Republic	2002	genomic RNA	cultured virus	subtype: A; genotype: M	1	231	6A,11T,15L,26A,41T,54M,58I,71D,87Q,92P,96L,120G,148V,169F,171I,178T,180A,200S,203R,207T,208G,210S,225S
KU168257	LA02FolC		2000	genomic RNA	cultured virus	subtype: B; genotype: M	1	231	6L,41T,115V,120S,194S,208G
KU168258	LA03BlEr		2002	genomic RNA	cultured virus	subtype: B; genotype: M	1	231	6M,14P,27I,83L,86A,87Q,91V,98D,120S,148V,171V,180D,225S,230I
KU168259	LA04GuFu		2002	genomic RNA	cultured virus	subtype: B; genotype: M	1	231	4R,5S,6P,68I,72V,83L,120S,128D,132T,136M,148V,154K,180D,199R
KU168260	LA05MeAl		2003	genomic RNA	cultured virus	subtype: B; genotype: M	1	231	6L,44A,83L,136M,148V,180D,208G,213D
KU168261	LA06ToXa	France	2003	genomic RNA	cultured virus	subtype: B; genotype: M	1	231	6L,15M,27I,71D,83L,87Q,91H,92P,116A,120H,154K,180D,203R,225S
KU168262	LA07SeJe		2003	genomic RNA	cultured virus	subtype: C; genotype: M	1	231	14P,17A,41T,71D,83L,91T,96V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KU168263	LA08SySa		2004	genomic RNA	cultured virus	subtype: C; genotype: M	1	231	6L,27I,41T,71D,83L,91P,116A,120S,128D,148V,154K,169F,177S,187D,203R,208G,225S,230I
KU168264	LA09DuCe		2001	genomic RNA	cultured virus	subtype: CRF01_AE; genotype: M	1	231	6A,14P,15L,27I,31G,33N,54M,58I,83A,92P,146Q,148V,178T,200S,207T,208G,225S
KU168265	LA10GuVa	Cameroon	2000	genomic RNA	cultured virus	subtype: CRF02_AG; genotype: M	1	231	2V,6A,11T,12Y,14S,15M,27I,41T,54M,58I,71D,78V,83A,92P,120S,124V,135V,148V,169F,171A,178T,180D,200A
KU168266	LA11ZaCh		2000	genomic RNA	cultured virus	subtype: CRF02_AG; genotype: M	1	231	6A,11I,14S,15M,27I,54M,58I,71D,79D,83A,92P,120S,135V,148V,169F,178T,190M,200S,203R,208G
KU168267	LA12FroG		2000	genomic RNA	cultured virus	subtype: CRF02_AG; genotype: M	1	231	6A,14S,15M,26A,27I,54M,58I,71D,79D,86A,87Q,91L,92P,120S,148V,169F,178T,183G,200S,203R,208G,210S,225A
KU168268	LA13BF17	Burkina Faso		genomic RNA	cultured virus	subtype: CRF06_cpx; genotype: M	1	231	6A,11I,12Y,13N,15P,27I,31G,33T,54M,58I,71D,83T,87Q,88V,91F,92P,96L,110N,111V,115V,120S,148V,169F,178T,183G,207T,208G,210S,225S
KU168269	LA14AAS287	Burkina Faso		genomic RNA	cultured virus	subtype: CRF06_cpx; genotype: M	1	231	6A,14S,15M,27I,44A,54V,58I,71D,92P,120S,124V,148V,169F,177G,178T,187D,208G
KU168270	LA15PoCa		2003	genomic RNA	cultured virus	subtype: CRF11_cpx; genotype: M	1	231	6A,15M,54M,58I,71D,92P,115V,120G,124V,131R,148V,154K,169F,178T,183G,191I,200S,203R,207T,208G
KU168271	LA17MuBo	Democratic Republic	2003	genomic RNA	cultured virus	subtype: D; genotype: M	1	231	6L,15L,33N,83T,91V,120S,148V,183G,187D,208G,225S
KU168272	LA18ZiAn	Democratic Republic	2002	genomic RNA	cultured virus	subtype: D; genotype: M	1	231	6L,14S,15L,41T,45D,58A,83T,91A,120S,135V,148V,180D,187D,208G
KU168273	LA19KoSa	Democratic Republic	2004	genomic RNA	cultured virus	subtype: H; genotype: M	1	231	6A,27I,30R,54A,58I,71D,74T,79D,83L,92Q,102N,116A,120A,148V,154K,169F,183G,187N,203R,208G,210S,211V,225S
KU168274	LA20DuCl	Romania	2003	genomic RNA	cultured virus	subtype: F; genotype: M	1	231	6L,14S,27I,71D,83L,87P,88V,92P,116Q,120G,124V,128D,148V,169F,178T,183G,187D,191I,208G,225S
KU168275	LA21LeAn		2003	genomic RNA	cultured virus	subtype: F1; genotype: M	1	231	6L,27I,71D,83L,92P,107A,116Q,120S,124V,128D,148V,169F,171A,180D,183G,187D,207T,208G
KU168276	LA22LeRe	France	2004	genomic RNA	cultured virus	subtype: F1; genotype: M	1	231	6L,14P,27I,71D,79D,83L,92P,96I,116Q,120G,124V,148V,169F,171V,180D,183G,187D,207T,208G,225S,230I
KU168277	LA23LiEd	Democratic Republic	2003	genomic RNA	cultured virus	subtype: G; genotype: M	1	231	6A,54S,58I,71D,79D,83I,86P,87Q,92P,96I,116R,120S,148V,169F,171A,178T,183G,191A,203R,208G,225S
KU168278	LA24HoCe		2003	genomic RNA	cultured virus	subtype: G; genotype: M	1	231	6A,75D,77I,83L,86Q,87Q,91L,92P,96I,107A,116T,120S,129L,148V,169F,178T,183V,187D,203R,208G,225S
KU168279	LA25LeMi	Central African Repu	2002	genomic RNA	cultured virus	subtype: H; genotype: M	1	231	6A,10P,54A,71D,83L,92P,110N,116A,120G,128D,148V,154K,169F,171C,180D,187D,203R,207Q,208G,211I,225S
KU168280	LA26DiAn	Democratic Republic	2003	genomic RNA	cultured virus	subtype: J; genotype: M	1	231	6L,10P,15L,27I,44A,71D,83L,91V,110N,120S,148V,154K,169F,171A,178T,180D,187D,207S,208G
KU168281	LA29YBF26	Cameroon	1995	genomic RNA	cultured virus	genotype: O	1	231	2V,6A,14P,15L,16T,26A,33N,36I,41M,48V,50Y,52I,58A,59I,64G,66L,68V,72V,79D,83T,86P,87A,88V,91L,92P,96I,100T,111Q,115V,116H,118I,119T_A,120S,122Q,128D,131R,132K,135V,141M,143K,148V,154K,178T,200Q,204S,208G,216V,225T
KU168282	LA30RBF125	Cameroon	1998	genomic RNA	cultured virus	genotype: O	1	231	2V,4T,6A,15L,26A,33N,36I,41M,48I,49S,50Y,52I,56M,58A,59I,61D,64G,66L,68V,72V,83T,86P,87A,88M,91L,92P,96I,100T,111Q,116H,118I,120R,120R_G,122N,128D,131R,132K,135V,141V,143K,148V,154K,178T,194S,200Q,204S,208G,216V,225S
KU168283	LA31BCF108	Cameroon	2003	genomic RNA	cultured virus	genotype: O	1	231	2V,4P,6A,14P,26A,33N,41M,48I,50Y,52I,58A,59I,64G,66L,68V,72V,78S,79D,83T,86P,87A,88M,91L,92P,96I,100T,111Q,115V,116H,118V,119T_G,120S,122N,128D,131R,132K,135V,141M,143K,148V,154K,180D,200Q,204S,207Q,208G,216AITV,225T
KU168284	LA32RBF140	Cameroon	2003	genomic RNA	cultured virus	genotype: O	1	231	2V,4T,6A,15L,26A,33N,36I,41M,48V,50Y,52I,58A,59I,64G,66L,68V,72V,79D,83T,86P,87A,88M,91L,92P,96I,100T,111Q,115V,116H,118T,120R,120R_G,122N,124V,128D,131R,132K,135V,141M,143K,148V,183G,194S,200Q,208G,216I,225T,230I
KU168285	LA33YBF37	Cameroon	1995	genomic RNA	cultured virus	genotype: O	1	231	4S,6A,13S,26A,33N,36I,41M,48I,50Y,52I,58A,59I,64G,66L,68V,72V,79D,83T,86P,87V,88V,91L,92P,98D,100T,111Q,112I,116Q,118I,119T_A,120S,122N,128D,131R,132K,135V,141M,143K,148V,154K,178T,194S,200Q,208G,216V,225T
KU168286	LA34RBF20	France	2002	genomic RNA	cultured virus	genotype: O	1	231	4P,6T,11I,15L,26A,33N,36I,41M,48I,50Y,52I,58A,59I,64G,66L,68V,72V,75D,79D,83T,86P,87P,88V,91L,92P,96I,100T,111Q,115V,116H,118I,119T_G,120S,122N,128D,131R,132K,135V,141M,143K,148V,154K,178T,183S,200Q,208G,216V,225T
KU168287	LA36GomM		2002	genomic RNA	cultured virus	genotype: A	2	231	2P,5S,7A,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82T,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,160S,162Q,163S,171S,177T,178D,179P,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
KU168288	LA45BCF02	Cameroon	1994	genomic RNA	cultured virus	genotype: O	1	231	2V,4S,6A,11I,14P,15L,26A,29Q,33N,36I,41M,48V,50Y,52I,58A,59I,61E,64G,66L,68V,72V,78L,83T,86P,87P,88I,91L,92P,96I,98D,100T,111Q,115V,116H,118V,120R,122P_N,128D,131R,132K,135V,141M,143K,148V,178T,200Q,204S,208G,216A,225T
KU168289	LA46BCF03	Cameroon	2001	genomic RNA	cultured virus	genotype: O	1	231	2V,4A,6A,14P,15L,26A,33N,36I,41M,48I,50Y,52I,58A,59I,64G,66L,68V,72V,78S,79D,83T,86P,87P,88I,91L,92P,96I,100T,111Q,115V,116H,118T,119T_T,120S,122Q,128D,131R,132K,135V,141M,143K,148V,154K,178T,200Q,204S,208G,216V,225T
KU168290	LA47BCF09	Cameroon	1995	genomic RNA	cultured virus	genotype: O	1	231	3I,4P,6A,15L,26A,33N,36I,41M,48V,50Y,52I,58A,59I,64G,66L,68V,72V,83T,86P,87P,88I,91L,92P,96I,100T,111Q,116H,118T,119T_G,120S,122G,128D,131R,132K,135V,141M,143K,148V,154K,178T,200Q,208G,216V,225T
KU168291	LA48BCF13	Cameroon	1995	genomic RNA	cultured virus	genotype: O	1	231	2V,4P,6A,26A,33N,36I,41M,48V,50Y,52I,58A,59I,64G,66L,68V,72V,78S,83T,86P,87P,88I,91L,92P,96I,98D,100T,111Q,115V,116H,118I,120R,121A,122P_N,128D,131R,132K,135V,141M,143K,148V,200Q,204S,208G,216V,225T,229K,230I
KU168292	LA49RBF189	Cameroon	2005	genomic RNA	cultured virus	genotype: O	1	231	2V,4P,6A,10L,11M,14P,15L,26A,33N,36I,41M,48I,50Y,52I,54S,58A,59I,64G,66L,68V,72V,78S,79D,83T,86P,87A,88V,91L,92P,96I,100T,111Q,115V,116H,118I,119T_S,120S,122H,128D,131R,132K,135V,141M,143K,148V,154K,178T,200Q,204S,208G,225T,229K,230I
KU168293	LA50YBF16	Cameroon	1994	genomic RNA	cultured virus	genotype: O	1	231	4T,6A,10A,14P,15L,26A,33N,36I,41M,48I,50Y,52I,54V,58A,59I,64G,66L,68V,72V,79D,83T,86P,87P,88I,91L,92P,96I,100A,111Q,116H,118T,119S,120R,120R_A,121G,122N,128D,131R,132K,135V,141M,143K,148V,178T,194S,200Q,208G,225T,229K,230I
KU168294	LA51YBF35	Cameroon	1996	genomic RNA	cultured virus	genotype: O	1	231	2V,3I,4T,6A,14P,15L,26A,33N,36I,41M,48I,50Y,52I,58A,59I,64G,66L,68V,72V,79D,83T,86P,87A,88M,91L,92P,96I,100T,111Q,116H,118I,120R,121G,122A,122A_N,123S,128D,131R,132K,135V,141M,143K,148V,178T,194S,200Q,204S,208G,216I,225T,230I
KU168295	LA52YBF39	Cameroon	1996	genomic RNA	cultured virus	genotype: O	1	231	2V,4S,6A,14P,15L,26A,33N,36I,41M,48V,50Y,52I,58A,59I,64G,66L,68V,72V,78S,79D,83T,86P,87P,88V,91L,92P,96I,100T,111Q,115V,116H,118I,119T_A,120S,122N,128D,131R,132K,135V,141M,143K,148V,154K,178T,200Q,204S,208G,216V,225T
KU168296	LA53BCF109	Cameroon	1998	genomic RNA	cultured virus	genotype: O	1	231	2V,4P,6A,11I,14P,26A,33N,36I,41M,48I,49S,50Y,52I,58A,59I,64G,66L,68V,72V,83T,87P,88I,91L,92P,96I,98D,100T,111Q,115V,116H,119T_G,120S,122N,128D,131R,132K,135V,141M,143K,148V,200Q,204S,208G,216V
KU168297	LA54BCF120	Cameroon	1999	genomic RNA	cultured virus	genotype: O	1	231	2V,4P,6A,15L,26A,33N,36I,41M,48I,50Y,52I,58A,64G,66L,68V,72V,83T,86I,87P,88V,91L,92P,96I,98D,100T,111Q,115V,116H,118I,119T_G,120S,122N,123S,128D,131R,132K,135V,141M,143K,148V,200Q,204S,208G,216I,225T
KU168298	LA55RBF206	France	2006	genomic RNA	cultured virus	genotype: O	1	231	2V,4A,6A,14P,15L,26A,33N,36I,41M,48I,50Y,52I,58A,59I,64G,66L,68V,72V,79D,83T,86P,87A,88M,91L,92P,96I,100T,111Q,115M,116H,118I,120R,120R_G,122N,128D,131R,132K,135V,141M,143K,148V,154K,178T,200Q,208G,210N,216V,225T
KU168299	LA56Senegl	Senegal	2012	genomic RNA	cultured virus	subtype: U; genotype: M	1	231	6A,14P,15M,16T,27I,54M,58I,71D,72A,83L,87Q,92P,96L,120S,128D,148V,169F,178T,187D,207S,208G
KU168300	LA57LmNe	Guinea-Bissau	2008	genomic RNA	cultured virus	subtype: G; genotype: M	1	231	6A,14P,41T,59I,71D,83I,86P,87Q,91F,92P,96I,98D,110N,116A,120S,148V,169F,178T,180D,187D,203R,208G,225S
KU168301	LA58Benin	Benin	2013	genomic RNA	cultured virus	subtype: CRF06_cpx; genotype: M	1	231	6A,11T,15M,27I,41T,54M,58I,71D,83T,86A,87Q,91F,92P,96L,98D,120S,148V,154K,169F,178T,183G,203R,208G,225S
KU168309	TH7229	Thailand	2003	genomic RNA	plasma	subtype: CRF01_AE; genotype: M	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
KU168308	ZA8119636	South Africa	08-Feb-1999	genomic RNA	plasma	subtype: C; genotype: M	1	231	6L,14P,15M,27I,41T,52M,71D,91V,96L,116A,120A,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S

Genbank References: capsid (p24)

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