<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Bredell (2016) HIV type 1 subtype C gag and nef diversity in Southern Africa AIDS Res. Hum. Retroviruses 23 (3), 477-481 (2007) 6.48e-164 64 64 Naive Plasma Direct PCR Molecular epidemiology

Download sequences

AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
DQ79298300MW525034Malawigenomic RNAplasmasubtype: C12316L,15L,27I,41T,71D,91V,98D,116A,128D,143K,148V,154K,169F,178T,187D,208G,210S
DQ79298400MW525042Malawigenomic RNAplasmasubtype: C12316L,14V,15M,27I,31G,41T,45D,54S,58V,75D,83I,96I,116T,124IM,128D,148V,154K,169F,178T,180D,187D,200I,203R,204G,208G,225S,226HQ
DQ79298500MW525160Malawigenomic RNAplasmasubtype: C12316V,14P,15L,27I,29D,41T,71D,83L,91V,110N,116A,120G,128D,148V,154K,169F,178T,180D,187D,200I,204G,207S,208G,225S
DQ79301600ZA615015South Africagenomic RNAplasmasubtype: C12316L,36I,41T,71D,83L,116A,120S,128D,148V,169F,178T,180D,187D,203R,208G,225S
DQ79301700ZA615026South Africagenomic RNAplasmasubtype: C12316A,27I,41T,71D,91V,116A,120S,148V,154K,169F,178T,180D,187D,203R,208G,210S,225A
DQ79301800ZA615031South Africagenomic RNAplasmasubtype: C12316L,27I,41T,71D,83L,128D,148V,154K,169F,178T,180D,187D,203R,208G
DQ79301900ZA615044South Africagenomic RNAplasmasubtype: C12316L,15L,27I,41T,71D,83L,91A,116A,120G,124V,148V,154K,169F,178T,180D,210S,225S
DQ79302100ZA615078South Africagenomic RNAplasmasubtype: C12316L,15L,41T,68L,71D,87Q,96I,116T,128D,148V,169F,178T,180D,187D,191L,200I,204G,208G,225A
DQ79302200ZA615080South Africagenomic RNAplasmasubtype: C12316L,27I,41T,50A,71D,83L,116A,121T,124V,128D,148V,169F,178T,180D,187D,203R,208G
DQ79302400ZA615107South Africagenomic RNAplasmasubtype: C12316L,27I,41T,71D,83L,96L,116A,124V,128D,136M,148V,169F,178T,180D,187D,203R,208G,225S
DQ79302500ZA615110South Africagenomic RNAplasmasubtype: C12316L,27I,41T,71D,83L,91V,116A,124V,128D,148V,154K,169F,171V,178T,180D,187D,203R,210S
DQ79302700ZA615136South Africagenomic RNAplasmasubtype: C12316L,15L,27I,41T,71D,91V,112L,115V,116A,120S,124V,148V,154K,169F,178T,187D,203R,208G,226HQ
DQ79302800ZA615162South Africagenomic RNAplasmasubtype: C12316L,13N,14P,27I,29D,41T,71D,83L,91V,110N,115V,116A,120A,128D,148V,154K,169F,177S,178T,187D,203R,225S,230I
DQ79302900ZA615185South Africagenomic RNAplasmasubtype: C12316A,14V,15M,27I,41T,68LMV,71D,79D,83L,96L,116A,128D,148V,154K,166DE,169F,178T,180D,203R,204G,207H,208G,210S,225S
DQ79300200ZM541085Zambiagenomic RNAplasmasubtype: C12316L,27I,36I,41T,49S,59I,71D,83L,87Q,91V,96I,107S,116T,120S,128D,148V,154K,169F,171A,178T,180D,187D,203R,207Q,208G,225S
DQ79300500ZM541126Zambiagenomic RNAplasmasubtype: C12316L,15L,27I,31N,41T,59I,71D,83L,91A,110N,116A,120S,128D,136M,148V,154K,169F,178T,187D,191I,203R,204G,208G,225S
DQ79300600ZM541131Zambiagenomic RNAplasmasubtype: C12316L,41T,71D,83T,116A,120S,124V,148V,154K,169F,178T,180D,187D,203R,208G,210S,211I
DQ79300700ZM541144Zambiagenomic RNAplasmasubtype: C12316L,27I,41T,45D,50S,54S,83L,91V,116A,120G,128D,148V,154K,169F,177S,178T,187D,203R,208G
DQ79301000ZM541193Zambiagenomic RNAplasmasubtype: C12316L,15L,27I,41T,59I,71D,83L,87Q,111P,116A,120S,148V,154K,160S,169F,178T,180D,187D,203R,208G,210S
DQ79301100ZM541228Zambiagenomic RNAplasmasubtype: C12316L,27I,41T,71D,83M,87Q,91A,96ILV,116A,120S,124V,148V,154K,169F,177S,178T,187D,203R,208G,225S,230I
DQ79301500ZM541353Zambiagenomic RNAplasmasubtype: C12316L,27I,41T,71D,83L,96I,116T,120T,128D,148V,154K,169F,178T,201L,203R,208G,210S,225S,229K
DQ79299200ZW536015Zimbabwegenomic RNAplasmasubtype: C12316A,11I,14S,15L,41T,50H,71D,83L,91V,116A,120S,124T,128D,148V,154K,169F,171V,177T,178T,180D,187D,203R,207S,208G,225S
DQ79299300ZW536031Zimbabwegenomic RNAplasmasubtype: C12316L,27I,41T,71D,83I,110N,116A,120S,124V,148V,169F,178T,180D,203R,208G,210S
DQ79299400ZW536107Zimbabwegenomic RNAplasmasubtype: C12316L,27I,41T,71D,83M,116A,120S,124V,128D,148V,169F,171V,178T,180D,200T_T,203R
DQ79298201MW525028Malawigenomic RNAplasmasubtype: C12316L,14P,15L,27I,41T,71D,83L,110N,116N,120S,128D,148V,154K,169F,171V,178T,180D,187D,203R,210S
DQ79298601MW525171Malawigenomic RNAplasmasubtype: C12316A,15L,27I,41T,71D,83L,116A,120G,124F,128D,148V,154K,160PS,178T,180D,207T,208G
DQ79298701MW525298Malawigenomic RNAplasmasubtype: C12316L,27I,41T,71D,83L,116A,120S,128D,136LMV,148V,154K,169F,177S,178T,187D,203R,208G,210S,225S
DQ79298801MW525301Malawigenomic RNAplasmasubtype: C12316L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,191I,200I,204G,207S,208G,210S
DQ79298901MW525316Malawigenomic RNAplasmasubtype: C12316L,14P,15L,27I,41T,71D,83L,91A,116A,120G,128D,148V,154K,169F,178T,180D,187D,200I,203R,204G,208G
DQ79299001MW525327Malawigenomic RNAplasmasubtype: C12316H,27I,41T,71D,83L,116A,120S,128D,136I,148V,154K,169F,178T,180D,187D,203R,208G,225S
DQ79299101MW525343Malawigenomic RNAplasmasubtype: C12316L,14S,27I,41T,71D,83I,116A,120S,124V,128D,148V,169F,178T,187D,200V,203R,204G,208G
DQ79302001ZA615059South Africagenomic RNAplasmasubtype: C123127I,41T,71D,91N,96L,116A,120H,124V,148V,154K,169F,178T,180D,187D,203R,208G
DQ79302301ZA615093South Africagenomic RNAplasmasubtype: C12316A,13T,14P,16T,27I,31N,41T,71D,83L,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
DQ79302601ZA615121South Africagenomic RNAplasmasubtype: C12316L,27I,41T,71D,83L,96I,116T,120S,128D,148V,169F,178T,180D,203R
DQ79303001ZA615325South Africagenomic RNAplasmasubtype: C12316L,10T,27I,41T,71D,83L,91V,96L,116A,120A,124V,128D,136M,148V,169F,178T,180D,187D,203R,208G,225S
DQ79303101ZA615340South Africagenomic RNAplasmasubtype: C12316L,27I,41T,71D,91V,116N,120G,128D,148V,169F,178T,187D,204G,207Q,208G
DQ79303201ZA615358South Africagenomic RNAplasmasubtype: C123127I,41T,71D,83L,91V,96L,116A,124V,128D,148V,154K,169F,170R,178T,180D,187D,203R,204G,207PQ,208G,225S
DQ79303301ZA615366South Africagenomic RNAplasmasubtype: C12316L,27I,41T,45D,54S,58A,71D,83L,116A,120S,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G
DQ79303401ZA615377South Africagenomic RNAplasmasubtype: C12316L,14S,15L,27I,36I,41T,71D,83L,92P,116A,120S,124V,128D,136M,148V,154K,169F,178T,187D,203R,204G,207Q,208G
DQ79303501ZA615381South Africagenomic RNAplasmasubtype: C12316A,27I,41T,71D,91V,110N,116A,120S,148V,154K,169F,178T,180D,187D,203R,208G,210S
DQ79303601ZA615394South Africagenomic RNAplasmasubtype: C12316L,16A,27I,31G,33N,41T,71D,83L,116A,118I,120G,135V,148V,154K,169F,178T,180D,187D,203R,207S,208G,210S
DQ79303701ZA615406South Africagenomic RNAplasmasubtype: C12316L,27I,41T,71D,91V,116A,120A,128D,148V,169F,178T,180D,203R,208G
DQ79303801ZA616017South Africagenomic RNAplasmasubtype: C12316L,14N,15M,17A,27I,41T,71D,83L,91V,96L,110N,116Q,120S,148V,154K,169F,178T,180D,187D,203R,208G,225S
DQ79303901ZA616042South Africagenomic RNAplasmasubtype: C12316L,13N,14P,15L,27I,41T,68I,71D,83L,91V,94N,96I,110N,116T,120S,124V,128D,148V,154K,169F,178T,180D,187D,199R,203R,208G,225S
DQ79304001ZA616091South Africagenomic RNAplasmasubtype: C12316A,27I,41T,71D,83I,116A,120S,148V,154K,169F,178T,180D,187D,203R,208G
DQ79304101ZA616453South Africagenomic RNAplasmasubtype: C12316L,27I,41T,71D,83L,91V,116A,120S,124V,128D,148V,169F,178T,180D,203R,210S
DQ79304201ZA616461South Africagenomic RNAplasmasubtype: C12316M,15L,27I,41T,50S,71D,83L,87Q,91V,96I,110N,116T,120S,124V,128D,148V,169F,171C,178T,187D,208G,210N,225S
DQ79304301ZA616472South Africagenomic RNAplasmasubtype: C12316L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,187D,203R,208G,210S
DQ79304401ZA616486South Africagenomic RNAplasmasubtype: C12316L,15L,27I,36I,41T,71D,83L,91A,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G,225S
DQ79304501ZA616499South Africagenomic RNAplasmasubtype: C123114P,15L,27I,41T,71D,83L,91V,110N,116A,120G,124V,128D,148V,169F,178T,180D,187D,203R,208G
DQ79299801ZM541036Zambiagenomic RNAplasmasubtype: C12316L,27I,41T,71D,83L,91V,96V,116T,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
DQ79299901ZM541049Zambiagenomic RNAplasmasubtype: C12316L,27I,41A,45D,54A,71D,91V,96I,116T,120S,124V,148V,169F,178T,183S,187D,208G
DQ79300001ZM541054Zambiagenomic RNAplasmasubtype: C12316L,15L,27I,41T,71D,83L,110N,116A,120S,148V,154K,169F,171V,178T,187D,203R,208S,210S,218W,219S,225Y
DQ79300101ZM541062Zambiagenomic RNAplasmasubtype: C12316L,27I,50V,71D,83L,86T,87Q,91L,92P,96I,116T,120S,128D,136M,148V,154K,169F,178T,187D,203R,204G,208G,210S,225S
DQ79300301ZM541098Zambiagenomic RNAplasmasubtype: C12316L,15L,27I,41T,71D,83T,87Q,96I,110N,116T,120Q,121Q,122N,148V,154K,169F,178T,180D,187D,200I,203R,204G,208G
DQ79300401ZM541115Zambiagenomic RNAplasmasubtype: C12316L,27I,41T,71D,83L,110N,116A,120S,128D,148V,154K,169F,177S,187D,203R,208G,210S,225S
DQ79300801ZM541178Zambiagenomic RNAplasmasubtype: C12316L,41T,59I,71D,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,225S
DQ79300901ZM541180Zambiagenomic RNAplasmasubtype: C12316L,27I,36I,45D,46R,50E,71D,83L,91V,116A,120G,124V,128D,148V,154K,163E,169F,178T,183G,187D,203R,208G,210S,225S
DQ79301201ZM541234Zambiagenomic RNAplasmasubtype: C12316L,14N,27I,41T,71D,83L,87Q,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
DQ79301301ZM541242Zambiagenomic RNAplasmasubtype: C12316L,27I,41T,71D,83L,86A,87Q,96I,116T,120S,128D,148V,169F,178T,180D,187D,203R,208G
DQ79301401ZM541256Zambiagenomic RNAplasmasubtype: C12316L,14S,15L,27I,41T,71D,91V,116T,120S,124V,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
DQ79299501ZW536121Zimbabwegenomic RNAplasmasubtype: C12316L,15L,27I,41T,71D,83L,116A,120S,128D,136M,148V,154K,169F,178T,180D,203R,225S
DQ79299601ZW536149Zimbabwegenomic RNAplasmasubtype: C12316L,27I,41T,71D,83L,116A,124V,128D,148V,169F,178T,180D,203R,208G,210S
DQ79299701ZW536173Zimbabwegenomic RNAplasmasubtype: C12316L,14P,15L,27I,31G,41T,71D,83L,87Q,91V,110N,116A,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S

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