<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Saina (2015) Comparison of HIV-1 nef and gag Variations and Host HLA Characteristics as Determinants of Disease Progression among HIV-1 Vertically Infected Kenyan Children PLoS ONE 10 (8), E0137140 (2015) 1.57e-164 50 50 Naive Plasma Direct PCR HLA

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AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
KR020105A001M-20080918G-1Kenya18-Sep-2008genomic DNAplasmagenotype: A112316A,11I,15L,27I,54M,58I,71D,83L,87Q,92P,111T,116A,120G,128D,148V,154K,169F,171A,178T,183G,200S,203R,207A,208G
KR020097A003M-20081013G-1Kenya13-Oct-2008genomic DNAplasmagenotype: A112316A,11I,14T,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,183G,200S,203R,207A,208G,210S,225S,230I
KR020098A004F-20090408G-1Kenya08-Apr-2009genomic DNAplasmagenotype: A112316A,14T,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,200S,203R,207A,208G
KR020088A006M-20060909G-1Kenya09-Sep-2006genomic DNAplasmagenotype: C12316L,27I,36I,41T,71D,83L,87Q,116A,118T,120Q,121Q,148V,154K,169F,178T,180D,187D,203R,208G,225S
KR020103A008F-20040404G-1Kenya04-Apr-2004genomic DNAplasmagenotype: C12316L,27I,41T,71D,83L,116A,120G,124V,128D,148V,154K,169F,171V,178T,180D,194T,203R
KR020077A009F-20070825G-1Kenya25-Aug-2007genomic DNAplasmagenotype: A112316A,11I,14S,15L,27I,54M,58I,71D,83L,92P,111S,115L,116A,120G,128D,148V,154K,169F,178T,183G,203R,207A,208G
KR020078A010M-20051006G-1Kenya06-Oct-2005genomic DNAplasmagenotype: A112316A,15V,27I,31G,58I,71D,83L,92P,111I,120S,128D,148V,154K,169F,178T,183G,203R,207A,208G
KR020099A012F-20050108G-1Kenya08-Jan-2005genomic DNAplasmagenotype: D12316L,15L,27I,33N,83L,93S,116A,120S,148V,180D,208G,225S
KR020092A014M-20031222G-1Kenya22-Dec-2003genomic DNAplasmagenotype: A112316A,11I,14T,15L,27I,41T,54M,58I,71D,83L,87Q,92P,111P,120S,128D,148V,154K,169F,171V,178T,180D,200S,203R,207T,208G,225S,230I
KR020079A016F-20030507G-1Kenya07-May-2003genomic DNAplasmagenotype: A112316A,14S,15V,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,200S,203R,207A,208G,225S
KR020080A017M-20031211G-1Kenya11-Dec-2003genomic DNAplasmagenotype: A112316A,11I,12Y,15M,31G,54M,58I,71D,79D,83L,92P,111P,120S,148V,169F,178T,180D,203R,207A,208G,210S
KR020101A021F-20041229G-1Kenya29-Dec-2004genomic DNAplasmagenotype: A112316A,14P,15L,27I,54M,58V,71D,83L,92P,96I,110N,111T,115L,116A,120G,128D,148V,154K,169F,178T,183G,187D,203R,208G
KR020089A023F-20030624G-cl1Kenya24-Jun-2003genomic DNAplasmagenotype: C12316L,14S,27I,41T,71D,91A,116A,120S,124V,128D,148V,154K,169F,180D,187D,203R,208G
KR020081A024F-20030821G-1Kenya21-Aug-2003genomic DNAplasmagenotype: A112316A,14S,15V,27I,54M,58I,71D,83L,87Q,92P,96L,111P,120S,128D,148V,154K,169F,180D,183G,187D,191I,200S,203R,207A,208G,225S
KR020102A027M-20081014G-1Kenya14-Oct-2008genomic DNAplasmagenotype: A112316A,14S,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,167K,169F,178T,183G,187D,191I,200A,203R,208G
KR020100A029F-20071020G-1Kenya20-Oct-2007genomic DNAplasmagenotype: A112316A,11I,15L,27I,31G,33N,54M,58I,59I,71D,83L,87Q,92P,96L,111P,120G,128D,129L,148V,154K,169F,178T,183H,191I,200S,203R,207T,208G
KR020090A031M-20041223G-1Kenya23-Dec-2004genomic DNAplasmagenotype: A112316A,11I,14T,15L,27I,54M,58V,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,200S,208G
KR020082A034F-20060331G-1Kenya31-Mar-2006genomic DNAplasmagenotype: A112316A,14T,15L,27I,54M,58I,71D,83L,92P,111P,116A,120G,124V,128D,148V,154K,169F,178T,180D,200S,203R,208G,225S
KR020096A035F-20060828G-1Kenya28-Aug-2006genomic DNAplasmagenotype: A112316A,10W,11T,14S,15L,27I,54M,58I,71D,83L,92P,96L,111P,120G,128D,148V,154K,169F,171C,178T,183G,191I,200S,203R,207T,208G
KR020094A041M-20030130G-1Kenya30-Jan-2003genomic DNAplasmagenotype: D12316L,14P,27I,29D,41T,83L,86P,87Q,91V,96L,110N,116T,120S,128D,148V,180D,208G,210S,225S
KR020093A046M-20040421G-1Kenya21-Apr-2004genomic DNAplasmagenotype: C12316A,14G,15V,27I,29D,31G,44A,48I,58I,71D,83L,92P,111P,116A,118I,128D,148V,154K,169F,178T,180D,187D,200N,203R,208G,210S
KR020083A047M-20031211G-1Kenya11-Dec-2003genomic DNAplasmagenotype: D-A112316L,27I,33N,83L,91Q,116A,120S,148V,180D,208G
KR020095A048M-20051010G-1Kenya10-Oct-2005genomic DNAplasmagenotype: D12312V,6L,14S,15L,27I,50G,83L,91V,96L,111T,116A,120A,128D,148V,154K,180D,199R,225S
KR020084A049F-20050330G-1Kenya30-Mar-2005genomic DNAplasmagenotype: A112316A,11I,14N,15L,27I,54M,58V,71D,83L,92P,111P,120S,128D,148V,154K,169F,171C,183G,200S,207T,208G,225S
KR020085A052F-20050103G-1Kenya03-Jan-2005genomic DNAplasmagenotype: A112316A,11I,15L,27I,54M,58I,68I,71D,83L,86I,87Q,92P,111P,120S,128N,148V,154K,169F,178T,183G,191I,200S,203R,207A,208G,225A
KR020070A054M-20080428G-1Kenya28-Apr-2008genomic DNAplasmagenotype: D-A112316A,11T,12Y,15L,54M,58V,71D,83L,86A,87Q,91F,92P,96L,111V,115V,120G,123A,131R,148V,169F,178T,191I,200A,203R,208G,225S
KR020104A055F-20081025G-1Kenya25-Oct-2008genomic DNAplasmagenotype: D12316L,27I,41T,50G,59I,83L,91N,120S,148V,154K,180D,203R,208G,225S
KR020062A057M-20041120G-1Kenya20-Nov-2004genomic DNAplasmagenotype: D12316L,15L,17S,27I,41A,83L,91P,92V,110N,120S,132K,136M,148V,154K,194S,225S
KR020063A059F-20050329G-1Kenya29-Mar-2005genomic DNAplasmagenotype: D12316L,27I,50T,83I,87Q,91Y,92P,96L,116T,120S,128D,148V,154K,178T,180D,208G,225S
KR020056A061F-20070324G-1Kenya24-Mar-2007genomic DNAplasmagenotype: A112316A,11I,14S,15L,27I,54M,58I,71D,83L,86I,92P,111P,120S,128D,148V,154K,169F,178T,183G,200S,203R,208G,209V,230I
KR020064A067M-20070320G-1Kenya20-Mar-2007genomic DNAplasmagenotype: A112316A,12L,14N,15L,27I,43F,54M,58I,71D,83L,86A,92P,96I,111P,115L,116Q,120G,128D,148V,154K,169F,178T,180D,200S,203R,207A,208G,225S
KR020057A071F-20090321G-1Kenya21-Mar-2009genomic DNAplasmagenotype: A112316A,11I,15M,27I,50G,54M,58I,71D,83L,92P,111P,116A,120A,128D,148V,154K,169F,171V,178T,183G,200S,203R,207T,208G
KR020065A072F-20090415G-1Kenya15-Apr-2009genomic DNAplasmagenotype: A112316A,11I,12Y,14T,15L,27I,54M,58I,71D,83L,87Q,91V,96I,111P,115M,116A,120G,125A,148V,154K,169F,178T,183G,191I,203R,207S,208G
KR020066A083M-20010523G-1Kenya23-May-2001genomic DNAplasmagenotype: A112316A,11I,15L,27I,54M,58I,71D,83L,87Q,92P,96I,111P,116A,120G,128D,148V,169F,171A,178T,180D,200S,207T,208G,225S
KR020058A085F-20080430G-1Kenya30-Apr-2008genomic DNAplasmagenotype: CRF02-AG12316A,15M,27I,41T,54M,58I,71D,79D,83L,91N,92P,120G,135V,136M,148V,169F,178T,200S,208G,210S
KR020071A086F-20060905G-1Kenya05-Sep-2006genomic DNAplasmagenotype: A112313M,6A,11I,15M,27I,54M,58I,71D,83A,96I,111I,116A,120G,128D,129L,148V,154K,169F,178T,191I,200S,203R,208G,210S,225S
KR020073A087M-20081023G-1Kenya23-Oct-2008genomic DNAplasmagenotype: A112316A,14T,15L,27I,54L,58I,71D,79K,81H,83L,92P,110N,111I,115V,120S,128D,131R,148V,169F,178T,180D,191I,200S,203R,207A,208G,210S
KR020059A089M-20040223G-1Kenya23-Feb-2004genomic DNAplasmagenotype: A112316A,14T,15L,27I,33N,50H,54M,58V,71D,83L,92P,111P,120G,124V,128D,148V,154K,177G,180D,200S,208G,225S
KR020060A090F-20030416G-1Kenya16-Apr-2003genomic DNAplasmagenotype: A112316A,11I,27I,54M,58I,71D,83L,92P,111I,120S,128D,148V,154K,169F,178T,183G,200N,203R,207A,208G,225S,226Y,229K
KR020067A091F-20040324G-1Kenya24-Mar-2004genomic DNAplasmagenotype: A112316A,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,171V,178T,183G,200S,203R,207T,208G
KR020086A095F-20070412G-1Kenya12-Apr-2007genomic DNAplasmagenotype: A112313I,6A,11M,13N,14P,15L,27I,30R,31G,48I,54M,58I,71D,83L,92P,111P,115V,118I,120G,128D,148V,154K,169F,178T,183G,191I,200G,203R,207T,208G,225S
KR020061A103M-20081021G-1Kenya21-Oct-2008genomic DNAplasmagenotype: A112316A,11T,12Y,14S,15M,27I,54M,58I,71D,83L,92P,111P,115L,120G,128D,148V,154K,169F,171V,178T,183G,187D,200A,203R,207T,208G,225S
KR020091A105M-20041006G-1Kenya06-Oct-2004genomic DNAplasmagenotype: A112316A,15V,27I,54M,58I,71D,83L,92P,96I,111P,115V,116A,120G,128D,148V,154K,169F,171C,178T,180D,203R,204G,207T,208G,225S
KR020074A114M-20081015G-1Kenya15-Oct-2008genomic DNAplasmagenotype: A112316A,11I,14N,15L,27I,50G,54M,58I,71D,83L,111P,116A,120G,128D,148V,154K,169F,178T,183G,200S,203R,204G,207T,208G
KR020072A115M-20080423G-1Kenya23-Apr-2008genomic DNAplasmagenotype: G12316A,11I,16T,27I,45D,54A,58I,71D,75D,83I,86P,87Q,96I,98D,116R,120S,148V,169F,178T,187D,203R,208G
KR020068A116F-20081015G-1Kenya15-Oct-2008genomic DNAplasmagenotype: A112316A,9L,11T,15L,27I,30R,31G,48I,54M,58I,71D,91V,92P,111P,115V,120G,128D,148V,154K,169F,178T,180D,200N,203R
KR020075A120F-20090316G-1Kenya16-Mar-2009genomic DNAplasmagenotype: A112312V,6A,14T,15F,27I,29D,31G,54M,58I,71D,83L,87Q,92P,96L,111P,120G,128D,148V,154K,169F,171C,178T,183G,200S,203R,207A,208G,225S
KR020087A122M-20100406G-1Kenya06-Apr-2010genomic DNAplasmagenotype: A112316A,11I,14N,15L,27I,54M,58V,71D,83L,92P,111P,120S,128D,148V,154K,169F,171V,178T,204S,207T,208G,225S
KR020076A123M-20081013G-1Kenya13-Oct-2008genomic DNAplasmagenotype: A112316A,14N,15L,27I,29D,54M,58I,71D,83L,92P,111P,116A,120G,124V,128D,148V,154K,169F,180D,200S,203R,208G,225S
KR020069A125M-20090407G-1Kenya07-Apr-2009genomic DNAplasmagenotype: A112316A,14S,27I,54M,58I,71D,83L,86A,91V,111P,116A,120G,123A,128D,148V,154K,169F,178T,180D,200S,203R,207A,208G

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