Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Umviligihozo (2021)	Increased frequency of inter-subtype HIV-1 recombinants identified by near full-length virus sequencing in a Rwanda acute heterosexual transmission cohort	Front Microbiol. 2021 Oct 7;12:734929.	9.92e-148	286	47	Naive	Plasma	SGS	Molecular epidemiology

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Accession	IsolateName	Country	Coll Date	MolType	Source	Note	FirstAA	LastAA	MutList
MT942708	175005_2	Rwanda	16-Jun-2005	genomic RNA		subtype: A1	1	231	6A,15V,27I,36I,58I,71D,83L,92P,111P,115V,120G,128D,148V,154K,169F,171A,180D,183G,187D,203R,207S,208G
MT942709	175005_3	Rwanda	16-Jun-2005	genomic RNA		subtype: A1	1	231	6A,15V,27I,36I,58I,71D,83L,92P,111P,115V,120G,128D,148V,154K,169F,171A,180D,183G,187D,203R,207S,208G
MT942710	175005_4	Rwanda	16-Jun-2005	genomic RNA		subtype: A1	1	231	6A,15V,27I,36I,58I,71D,83L,92P,111P,115V,120G,128D,148V,154K,169F,171A,180D,183G,187D,203R,207S,208G
MT942711	175005_5	Rwanda	16-Jun-2005	genomic RNA		subtype: A1	1	231	6A,15V,27I,36I,58I,71D,83L,92P,111P,115V,120G,128D,148V,154K,169F,171A,180D,183G,187D,203R,207S,208G
MT942712	175008_1	Rwanda	25-May-2005	genomic RNA		subtype: C	1	231	6L,27I,36I,41T,71D,78V,83L,92P,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MT942713	175008_2	Rwanda	25-May-2005	genomic RNA		subtype: C	1	231	6L,27I,36I,41T,71D,83L,92P,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MT942714	175008_3	Rwanda	25-May-2005	genomic RNA		subtype: C	1	231	6L,27I,36I,41T,71D,83L,92P,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MT942715	175008_4	Rwanda	25-May-2005	genomic RNA		subtype: C	1	231	6L,27I,36I,41T,71D,83L,92P,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MT942716	175008_5	Rwanda	25-May-2005	genomic RNA		subtype: C	1	231	6L,27I,36I,41T,71D,83L,92P,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MT942717	175008_6	Rwanda	25-May-2005	genomic RNA		subtype: C	1	231	6L,27I,36I,41T,71D,83L,92P,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MT942718	175008_7	Rwanda	25-May-2005	genomic RNA		subtype: C	1	231	6L,27I,36I,41T,71D,83L,92P,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MT942719	175008_8	Rwanda	25-May-2005	genomic RNA		subtype: C	1	231	6L,27I,36I,41T,71D,83L,92P,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MT942720	175008_9	Rwanda	25-May-2005	genomic RNA		subtype: C	1	231	6L,27I,36I,41T,71D,83L,92P,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MT942721	175010_1	Rwanda	27-Jan-2006	genomic RNA		subtype: A1	1	231	6A,15V,26A,27I,36I,58I,71D,79D,83L,87Q,92P,96L,111P,116R,120S,128D,148V,169F,171I,180D,191I,203R,207A,208G,210S
MT942722	175010_2_TF	Rwanda	27-Jan-2006	genomic RNA		subtype: A1	1	231	6A,15V,26A,27I,36I,58I,71D,79D,83L,87Q,92P,96L,111P,116R,120S,128D,148V,169F,171I,180D,191I,203R,207A,208G,210S
MT942723	175010_3	Rwanda	27-Jan-2006	genomic RNA		subtype: A1	1	231	6A,15V,26A,27I,36I,58I,71D,79D,83L,87Q,92P,96L,111P,116R,120S,128D,148V,169F,171I,180D,191I,203R,207A,208G,210S
MT942724	175010_4	Rwanda	27-Jan-2006	genomic RNA		subtype: A1	1	231	6A,15V,26A,27I,36I,58I,71D,79D,83L,87Q,92P,96L,111P,116R,120S,128D,148V,169F,171I,180D,191I,203R,207A,208G,210S
MT942725	175010_5	Rwanda	27-Jan-2006	genomic RNA		subtype: A1	1	231	6A,15V,26A,27I,36I,58I,71D,79D,83L,87Q,92P,96L,111P,116R,120S,128D,148V,169F,171I,180D,191I,203R,207A,208G,210S
MT942726	175010_7	Rwanda	27-Jan-2006	genomic RNA		subtype: A1	1	231	6A,15V,26A,27I,36I,58I,71D,79D,83L,87Q,92P,96L,111P,116R,120S,128D,148V,169F,171I,180D,191I,203R,207A,208G,210S
MT942727	175010_8	Rwanda	27-Jan-2006	genomic RNA		subtype: A1	1	231	6A,15V,26A,27I,36I,58I,71D,79D,83L,87Q,92P,96L,111P,116R,120S,128D,148V,169F,171I,180D,191I,203R,207A,208G,210S
MT942728	175010_9	Rwanda	27-Jan-2006	genomic RNA		subtype: A1	1	231	6A,15V,26A,27I,36I,58I,71D,79D,83L,87Q,92P,96L,111P,116R,120S,128D,148V,169F,171I,180D,191I,203R,207A,208G,210S
MT942729	175011_1	Rwanda	14-Dec-2005	genomic RNA		subtype: A1C	1	231	15L,27I,41T,71D,83L,86P,87Q,91A,96I,116T,120S,128D,136I,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
MT942730	175011_3	Rwanda	14-Dec-2005	genomic RNA		subtype: A1C	1	231	15L,27I,41T,71D,83L,86P,87Q,91A,96I,116T,120S,128D,136I,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
MT942731	175011_4	Rwanda	14-Dec-2005	genomic RNA		subtype: A1C	1	231	15L,27I,41T,71D,83L,86P,87Q,91A,96I,116T,120S,128D,136I,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
MT942732	175011_5	Rwanda	14-Dec-2005	genomic RNA		subtype: A1C	1	231	15L,27I,41T,71D,83L,86P,87Q,91A,96I,116T,120S,128D,136I,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
MT942733	175011_6	Rwanda	14-Dec-2005	genomic RNA		subtype: A1C	1	231	15L,27I,41T,71D,83L,86P,87Q,91A,96I,116T,120S,128D,136I,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
MT942736	175012_1_TF	Rwanda	31-Mar-2005	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,91A,92P,111I,120S,128D,148V,154K,169F,171V,178T,183G,200S,207T,208G,225S
MT942734	175012_12	Rwanda	31-Mar-2005	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,91A,92P,111I,120S,128D,148V,154K,169F,171V,178T,183G,200S,207T,208G,225S
MT942735	175012_13	Rwanda	31-Mar-2005	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,91A,92P,111I,120S,128D,148V,154K,169F,171V,178T,183G,200S,207T,208G,225S
MT942737	175012_3	Rwanda	31-Mar-2005	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,91A,92P,111I,120S,128D,148V,154K,169F,171V,178T,183G,200S,207T,208G,225S
MT942738	175012_4	Rwanda	31-Mar-2005	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,91A,92P,111I,120S,128D,148V,154K,169F,171V,178T,183G,200S,207T,208G,225S
MT942739	175012_5	Rwanda	31-Mar-2005	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,91A,92P,111I,120S,128D,148V,154K,169F,171V,178T,183G,200S,207T,208G,225S
MT942740	175012_6_TF	Rwanda	31-Mar-2005	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,91A,92P,111I,120S,128D,148V,154K,169F,171V,178T,183G,200S,207T,208G,225S
MT942741	175012_7	Rwanda	31-Mar-2005	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,91A,92P,111I,120S,128D,148V,154K,169F,171V,178T,183G,200S,207T,208G,225S
MT942742	175012_8	Rwanda	31-Mar-2005	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,91A,92P,111I,120S,128D,148V,154K,169F,171V,178T,183G,200S,207T,208G,225S
MT942743	175012_9	Rwanda	31-Mar-2005	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,91A,92P,111I,120S,128D,148V,154K,169F,171V,178T,183G,200S,207T,208G,225S
MT942744	175014_11	Rwanda	21-Oct-2005	genomic RNA		subtype: A1	1	231	6A,14S,15V,26A,27I,30R,58I,68L,71D,83L,92P,120S,124V,128D,131R,148V,154K,169F,171I,177G,200S,203R,204G,207Q,208G,210S,216A,225S
MT942745	175014_2	Rwanda	21-Oct-2005	genomic RNA		subtype: A1	1	231	6A,14S,15V,26A,27I,30R,58I,68L,71D,83L,92P,120S,124V,128D,131R,148V,154K,169F,171I,177G,200S,203R,204G,207Q,208G,210S,216A,225S
MT942746	175014_3	Rwanda	21-Oct-2005	genomic RNA		subtype: A1	1	231	6A,14S,15V,26A,27I,30R,58I,68L,71D,83L,92P,120S,124V,128D,131R,148V,154K,169F,171I,177G,200S,203R,204G,207Q,208G,210S,216A,225S
MT942747	175014_4	Rwanda	21-Oct-2005	genomic RNA		subtype: A1	1	231	6A,14S,15V,26A,27I,30R,58I,68L,71D,83L,92P,120S,124V,128D,131R,148V,154K,169F,171I,177G,200S,203R,204G,207Q,208G,210S,216A,225S
MT942748	175014_6_TF	Rwanda	21-Oct-2005	genomic RNA		subtype: A1	1	231	6A,14S,15V,26A,27I,30R,58I,68L,71D,83L,92P,120S,124V,128D,131R,148V,154K,169F,171I,177G,200S,203R,204G,207Q,208G,210S,216A,225S
MT942749	175014_7	Rwanda	21-Oct-2005	genomic RNA		subtype: A1	1	231	6A,14S,15V,26A,27I,30R,58I,68L,71D,83L,92P,120S,124V,128D,131R,148V,154K,169F,171I,177G,200S,203R,204G,207Q,208G,210S,216A,225S
MT942750	175014_8	Rwanda	21-Oct-2005	genomic RNA		subtype: A1	1	231	6A,14S,15V,26A,27I,30R,58I,68L,71D,83L,92P,120S,124V,128D,131R,148V,154K,169F,171I,177G,200S,203R,204G,207Q,208G,210S,216A,225S
MT942751	175014_9	Rwanda	21-Oct-2005	genomic RNA		subtype: A1	1	231	6A,14S,15V,26A,27I,30R,58I,68L,71D,83L,92P,120S,124V,128D,131R,148V,154K,169F,171I,177G,200S,203R,204G,207Q,208G,210S,216A,225S
MT942752	175017_1	Rwanda	03-May-2005	genomic RNA		subtype: A1C	1	231	6A,11I,27I,54M,58I,71D,83L,87Q,92P,111I,115M,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MT942753	175017_10	Rwanda	03-May-2005	genomic RNA		subtype: A1C	1	231	6A,11I,27I,54M,58I,71D,83L,87Q,92P,111I,115M,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MT942754	175017_11	Rwanda	03-May-2005	genomic RNA		subtype: A1C	1	231	6A,11I,27I,54M,58I,71D,83L,87Q,92P,111I,115M,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MT942755	175017_12_TF	Rwanda	03-May-2005	genomic RNA		subtype: A1C	1	231	6A,11I,27I,54M,58I,71D,83L,87Q,92P,111I,115M,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MT942756	175017_13	Rwanda	03-May-2005	genomic RNA		subtype: A1C	1	231	6A,11I,27I,54M,58I,71D,83L,87Q,92P,111I,115M,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MT942757	175017_2	Rwanda	03-May-2005	genomic RNA		subtype: A1C	1	231	6A,11I,27I,54M,58I,71D,83L,87Q,92P,111I,115M,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MT942758	175017_3	Rwanda	03-May-2005	genomic RNA		subtype: A1C	1	231	6A,11I,27I,54M,58I,71D,83L,87Q,92P,111I,115M,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MT942759	175017_4	Rwanda	03-May-2005	genomic RNA		subtype: A1C	1	231	6A,11I,27I,54M,58I,71D,83L,87Q,92P,111I,115M,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MT942760	175017_5	Rwanda	03-May-2005	genomic RNA		subtype: A1C	1	231	6A,11I,27I,54M,58I,71D,83L,87Q,92P,111I,115M,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MT942761	175017_6	Rwanda	03-May-2005	genomic RNA		subtype: A1C	1	231	6A,11I,27I,54M,58I,71D,83L,87Q,92P,111I,115M,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MT942762	175017_8	Rwanda	03-May-2005	genomic RNA		subtype: A1C	1	231	6A,11I,27I,54M,58I,71D,83L,87Q,92P,111I,115M,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MT942763	175017_9	Rwanda	03-May-2005	genomic RNA		subtype: A1C	1	231	6A,11I,27I,54M,58I,71D,83L,87Q,92P,111I,115M,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MT942764	175019_1	Rwanda	30-Mar-2005	genomic RNA		subtype: A1	1	231	6A,11I,12Y,14P,15L,27I,29D,31G,33N,54M,58V,71D,83M,87Q,92P,96L,111P,115L,120G,128D,129L,148V,154K,169F,178T,183G,200S,203R,207T,208G
MT942765	175019_10	Rwanda	30-Mar-2005	genomic RNA		subtype: A1	1	231	6A,11I,12Y,14P,15L,27I,29D,31G,33N,54M,58V,71D,83M,87Q,92P,96L,111P,115L,120G,128D,129L,148V,154K,169F,178T,183G,200S,203R,207T,208G
MT942766	175019_11	Rwanda	30-Mar-2005	genomic RNA		subtype: A1	1	231	6A,11I,12Y,14P,15L,27I,29D,31G,33N,54M,58V,71D,83M,87Q,92P,96L,111P,115L,120G,128D,129L,148V,154K,169F,178T,183G,200S,203R,207T,208G
MT942767	175019_12	Rwanda	30-Mar-2005	genomic RNA		subtype: A1	1	231	6A,11I,12Y,14P,15L,27I,29D,31G,33N,54M,58V,71D,83M,87Q,92P,96L,111P,115L,120G,128D,129L,148V,154K,169F,178T,183G,200S,203R,207T,208G
MT942768	175019_13	Rwanda	30-Mar-2005	genomic RNA		subtype: A1	1	231	6A,11I,12Y,14P,15L,27I,29D,31G,33N,54M,58V,71D,83M,87Q,92P,96L,111P,115L,120G,128D,129L,148V,154K,169F,178T,183G,200S,203R,207T,208G
MT942769	175019_2	Rwanda	30-Mar-2005	genomic RNA		subtype: A1	1	231	6A,11I,12Y,14P,15L,27I,29D,31G,33N,54M,58V,71D,83M,87Q,92P,96L,111P,115L,120G,128D,129L,148V,154K,169F,178T,183G,200S,203R,207T,208G
MT942770	175019_3	Rwanda	30-Mar-2005	genomic RNA		subtype: A1	1	231	6A,11I,12Y,14P,15L,27I,29D,31G,33N,54M,58V,71D,83M,87Q,92P,96L,111P,115L,120G,128D,129L,148V,154K,169F,178T,183G,200S,203R,207T,208G
MT942771	175019_4	Rwanda	30-Mar-2005	genomic RNA		subtype: A1	1	231	6A,11I,12Y,14P,15L,27I,29D,31G,33N,54M,58V,71D,83M,87Q,92P,96L,111P,115L,120G,128D,129L,148V,154K,169F,178T,183G,200S,203R,207T,208G
MT942772	175019_5	Rwanda	30-Mar-2005	genomic RNA		subtype: A1	1	231	6A,11I,12Y,14P,15L,27I,29D,31G,33N,54M,58V,71D,83M,87Q,92P,96L,111P,115L,120G,128D,129L,148V,154K,169F,178T,183G,200S,203R,207T,208G
MT942773	175019_6_TF	Rwanda	30-Mar-2005	genomic RNA		subtype: A1	1	231	6A,11I,12Y,14P,15L,27I,29D,31G,33N,54M,58V,71D,83M,87Q,92P,96L,111P,115L,120G,128D,129L,148V,154K,169F,178T,183G,200S,203R,207T,208G
MT942774	175019_8	Rwanda	30-Mar-2005	genomic RNA		subtype: A1	1	231	6A,11I,12Y,14P,15L,27I,29D,31G,33N,54M,58V,71D,83M,87Q,92P,96L,111P,115L,120G,128D,129L,148V,154K,169F,178T,183G,200S,203R,207T,208G
MT942775	175019_9	Rwanda	30-Mar-2005	genomic RNA		subtype: A1	1	231	6A,11I,12Y,14P,15L,27I,29D,31G,33N,54M,58V,71D,83M,87Q,92P,96L,111P,115L,120G,128D,129L,148V,154K,169F,178T,183G,200S,203R,207T,208G
MT942776	175020_1	Rwanda	12-Oct-2005	genomic RNA		subtype: A1	1	231	6A,9H,15L,27I,54M,58V,71D,83L,87Q,92P,96I,111P,116A,120G,123A,128D,148V,154K,169F,171I,183G,187D,200S,207A,208G
MT942777	175020_10	Rwanda	12-Oct-2005	genomic RNA		subtype: A1	1	231	6A,9H,15L,27I,54M,58V,71D,83L,87Q,92P,96I,111P,116A,120G,123A,128D,148V,154K,169F,171I,183G,187D,200S,207A,208G
MT942778	175020_11	Rwanda	12-Oct-2005	genomic RNA		subtype: A1	1	231	6A,9H,15L,27I,54M,58V,71D,83L,87Q,92P,96I,111P,116A,120G,123A,128D,148V,154K,169F,171I,183G,187D,200S,207A,208G
MT942779	175020_12	Rwanda	12-Oct-2005	genomic RNA		subtype: A1	1	231	6A,9H,15L,27I,54M,58V,71D,83L,87Q,92P,96I,111P,116A,120G,123A,128D,148V,154K,169F,171I,183G,187D,200S,207A,208G
MT942780	175020_13	Rwanda	12-Oct-2005	genomic RNA		subtype: A1	1	231	6A,9H,15L,27I,54M,58V,71D,83L,87Q,92P,96I,111P,116A,120G,123A,128D,148V,154K,169F,171I,183G,187D,200S,207A,208G
MT942781	175020_14	Rwanda	12-Oct-2005	genomic RNA		subtype: A1	1	231	6A,9H,15L,27I,54M,58V,71D,83L,87Q,92P,96I,111P,116A,120G,123A,128D,148V,154K,169F,171I,183G,187D,200S,207A,208G
MT942782	175020_2	Rwanda	12-Oct-2005	genomic RNA		subtype: A1	1	231	6A,9H,15L,27I,54M,58V,71D,83L,87Q,92P,96I,111P,116A,120G,123A,128D,148V,154K,169F,171I,183G,187D,200S,207A,208G
MT942783	175020_3	Rwanda	12-Oct-2005	genomic RNA		subtype: A1	1	231	6A,9H,15L,27I,54M,58V,71D,83L,87Q,92P,96I,111P,116A,120G,123A,128D,148V,154K,169F,171I,183G,187D,200S,207A,208G
MT942784	175020_4	Rwanda	12-Oct-2005	genomic RNA		subtype: A1	1	231	6A,9H,15L,27I,54M,58V,71D,83L,87Q,92P,96I,111P,116A,120G,123A,128D,148V,154K,169F,171I,183G,187D,200S,207A,208G
MT942785	175020_5	Rwanda	12-Oct-2005	genomic RNA		subtype: A1	1	231	6A,9H,15L,27I,54M,58V,71D,83L,87Q,92P,96I,111P,116A,120G,123A,128D,148V,154K,169F,171I,183G,187D,200S,207A,208G
MT942786	175020_6	Rwanda	12-Oct-2005	genomic RNA		subtype: A1	1	231	6A,9H,15L,27I,54M,58V,71D,83L,87Q,92P,96I,111P,116A,120G,123A,128D,148V,154K,169F,171I,183G,187D,200S,207A,208G
MT942787	175020_7	Rwanda	12-Oct-2005	genomic RNA		subtype: A1	1	231	6A,9H,15L,27I,54M,58V,71D,83L,87Q,92P,96I,111P,116A,120G,123A,128D,148V,154K,169F,171I,183G,187D,200S,207A,208G
MT942788	175020_8	Rwanda	12-Oct-2005	genomic RNA		subtype: A1	1	231	6A,9H,15L,27I,54M,58V,71D,83L,87Q,92P,96I,111P,116A,120G,123A,128D,148V,154K,169F,171I,183G,187D,200S,207A,208G
MT942789	175020_9	Rwanda	12-Oct-2005	genomic RNA		subtype: A1	1	231	6A,9H,15L,27I,54M,58V,71D,83L,87Q,92P,96I,111P,116A,120G,123A,128D,148V,154K,169F,171I,183G,187D,200S,207A,208G
MT942790	175027_1	Rwanda	10-Aug-2006	genomic RNA		subtype: A1	1	231	6A,15L,27I,30R,54M,58I,71D,83L,92P,107S,111P,120S,128D,148V,154K,169F,171A,180D,183S,187D,191I,200S,203R,208G
MT942791	175027_10	Rwanda	10-Aug-2006	genomic RNA		subtype: A1	1	231	6A,15L,27I,30R,54M,58I,71D,83L,92P,107S,111P,120S,128D,148V,154K,169F,171A,180D,183S,187D,191I,200S,203R,208G
MT942792	175027_11	Rwanda	10-Aug-2006	genomic RNA		subtype: A1	1	231	6A,15L,27I,30R,54M,58I,71D,83L,92P,107S,111P,120S,128D,148V,154K,169F,171A,180D,183S,187D,191I,200S,203R,208G
MT942793	175027_2	Rwanda	10-Aug-2006	genomic RNA		subtype: A1	1	231	6A,15L,27I,30R,54M,58I,71D,83L,92P,107S,111P,120S,128D,148V,154K,169F,171A,180D,183S,187D,191I,200S,203R,208G
MT942794	175027_3	Rwanda	10-Aug-2006	genomic RNA		subtype: A1	1	231	6A,15L,27I,30R,54M,58I,71D,83L,92P,107S,111P,120S,128D,148V,154K,169F,171A,180D,183S,187D,191I,200S,203R,208G
MT942795	175027_4	Rwanda	10-Aug-2006	genomic RNA		subtype: A1	1	231	6A,15L,27I,30R,54M,58I,71D,83L,92P,107S,111P,120S,128D,148V,154K,169F,171A,180D,183S,187D,191I,200S,203R,208G
MT942796	175027_5	Rwanda	10-Aug-2006	genomic RNA		subtype: A1	1	231	6A,15L,27I,30R,54M,58I,71D,83L,92P,107S,111P,120S,128D,148V,154K,169F,171A,180D,183S,187D,191I,200S,203R,208G
MT942797	175027_6	Rwanda	10-Aug-2006	genomic RNA		subtype: A1	1	231	6A,15L,27I,30R,54M,58I,71D,83L,92P,107S,111P,120S,128D,148V,154K,169F,171A,180D,183S,187D,191I,200S,203R,208G
MT942798	175027_7	Rwanda	10-Aug-2006	genomic RNA		subtype: A1	1	231	6A,15L,27I,30R,54M,58I,71D,83L,92P,107S,111P,120S,128D,148V,154K,169F,171A,180D,183S,187D,191I,200S,203R,208G
MT942799	175027_8	Rwanda	10-Aug-2006	genomic RNA		subtype: A1	1	231	6A,15L,27I,30R,54M,58I,71D,83L,92P,107S,111P,120S,128D,148V,154K,169F,171A,180D,183S,187D,191I,200S,203R,208G
MT942800	175027_9	Rwanda	10-Aug-2006	genomic RNA		subtype: A1	1	231	6A,15L,27I,30R,54M,58I,71D,83L,92P,107S,111P,120S,128D,148V,154K,169F,171A,180D,183S,187D,191I,200S,203R,208G
MT942801	175053_1	Rwanda	08-Aug-2007	genomic RNA		subtype: A1C	1	231	6L,13N,14P,27I,41T,71D,83L,87Q,91V,96I,116T,124M,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
MT942802	175053_2_TF	Rwanda	08-Aug-2007	genomic RNA		subtype: A1C	1	231	6L,13N,14P,27I,41T,71D,83L,87Q,91V,96I,116T,124M,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
MT942803	175053_3	Rwanda	08-Aug-2007	genomic RNA		subtype: A1C	1	231	6L,13N,14P,27I,41T,71D,83L,87Q,91V,96I,116T,124M,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
MT942804	175053_4	Rwanda	08-Aug-2007	genomic RNA		subtype: A1C	1	231	6L,13N,14P,27I,41T,71D,83L,87Q,91V,96I,116T,124M,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
MT942805	175053_6	Rwanda	08-Aug-2007	genomic RNA		subtype: A1C	1	231	6L,13N,14P,27I,41T,71D,83L,87Q,91V,96I,116T,124M,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
MT942806	175053_8	Rwanda	08-Aug-2007	genomic RNA		subtype: A1C	1	231	6L,13N,14P,27I,41T,71D,83L,87Q,91V,96I,116T,124M,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
MT942807	175059_1	Rwanda	14-Dec-2007	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15V,54M,58I,71D,83L,87Q,91V,92P,96L,111P,120G,128D,148V,169F,171A,178T,180D,200S,207T,208G
MT942808	175059_10	Rwanda	14-Dec-2007	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15V,54M,58I,71D,83L,87Q,91V,92P,96L,111P,120G,128D,148V,169F,171A,178T,180D,200S,207T,208G
MT942809	175059_11	Rwanda	14-Dec-2007	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15V,54M,58I,71D,83L,87Q,91V,92P,96L,111P,120G,128D,148V,169F,171A,178T,180D,200S,207T,208G
MT942810	175059_12	Rwanda	14-Dec-2007	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15V,54M,58I,71D,83L,87Q,91V,92P,96L,111P,120G,128D,148V,169F,171A,178T,180D,200S,207T,208G
MT942811	175059_13	Rwanda	14-Dec-2007	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15V,54M,58I,71D,83L,87Q,91V,92P,96L,111P,120G,128D,148V,169F,171A,178T,180D,200S,207T,208G
MT942812	175059_14	Rwanda	14-Dec-2007	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15V,54M,58I,71D,83L,87Q,91V,92P,96L,111P,120G,128D,148V,169F,171A,178T,180D,200S,207T,208G
MT942813	175059_15	Rwanda	14-Dec-2007	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15V,54M,58I,71D,83L,87Q,91V,92P,96L,111P,120G,128D,148V,169F,171A,178T,180D,200S,207T,208G
MT942814	175059_16	Rwanda	14-Dec-2007	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15V,54M,58I,71D,83L,87Q,91V,92P,96L,111P,120G,128D,148V,169F,171A,178T,180D,200S,207T,208G
MT942815	175059_17	Rwanda	14-Dec-2007	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15V,54M,58I,71D,83L,87Q,91V,92P,96L,111P,120G,128D,148V,169F,171A,178T,180D,200S,207T,208G
MT942816	175059_18	Rwanda	14-Dec-2007	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15V,54M,58I,71D,83L,87Q,91V,92P,96L,111P,120G,128D,148V,169F,171A,178T,180D,200S,207T,208G
MT942817	175059_19	Rwanda	14-Dec-2007	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15V,54M,58I,71D,83L,87Q,91V,92P,96L,111P,120G,128D,148V,169F,171A,178T,180D,200S,207T,208G
MT942818	175059_2	Rwanda	14-Dec-2007	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15V,54M,58I,71D,83L,87Q,91V,92P,96L,111P,120G,128D,148V,169F,171A,178T,180D,200S,207T,208G
MT942819	175059_3_TF	Rwanda	14-Dec-2007	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15V,54M,58I,71D,83L,87Q,91V,92P,96L,111P,120G,128D,148V,169F,171A,178T,180D,200S,207T,208G
MT942820	175059_4_TF	Rwanda	14-Dec-2007	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15V,54M,58I,71D,83L,87Q,91V,92P,96L,111P,120G,128D,148V,169F,171A,178T,180D,200S,207T,208G
MT942821	175059_5	Rwanda	14-Dec-2007	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15V,54M,58I,71D,83L,87Q,91V,92P,96L,111P,120G,128D,148V,169F,171A,178T,180D,200S,207T,208G
MT942822	175059_6	Rwanda	14-Dec-2007	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15V,54M,58I,71D,83L,87Q,91V,92P,96L,111P,120G,128D,148V,169F,171A,178T,180D,200S,207T,208G
MT942823	175059_7	Rwanda	14-Dec-2007	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15V,54M,58I,71D,83L,87Q,91V,92P,96L,111P,120G,128D,148V,169F,171A,178T,180D,200S,207T,208G
MT942824	175059_8	Rwanda	14-Dec-2007	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15V,54M,58I,71D,83L,87Q,91V,92P,96L,111P,120G,128D,148V,169F,171A,178T,180D,200S,207T,208G
MT942825	175059_9	Rwanda	14-Dec-2007	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15V,54M,58I,71D,83L,87Q,91V,92P,96L,111P,120G,128D,148V,169F,171A,178T,180D,200S,207T,208G
MT942826	175062_1	Rwanda	11-Feb-2008	genomic RNA		subtype: A1	1	231	6A,15V,27I,54M,58I,71D,83L,87Q,92P,124V,128D,131R,148V,152E,153V,154K,169F,171I,180D,183G,200N,203R,207T,208G,225S
MT942827	175062_10	Rwanda	11-Feb-2008	genomic RNA		subtype: A1	1	231	6A,15V,27I,54M,58I,71D,83L,87Q,92P,124V,128D,131R,148V,152E,153V,154K,169F,171I,180D,183G,200N,203R,207T,208G,225S
MT942828	175062_2	Rwanda	11-Feb-2008	genomic RNA		subtype: A1	1	231	6A,15V,27I,54M,58I,71D,83L,87Q,92P,124V,128D,131R,148V,152E,153V,154K,169F,171I,180D,183G,200N,203R,207T,208G,225S
MT942829	175062_3	Rwanda	11-Feb-2008	genomic RNA		subtype: A1	1	231	6A,15V,27I,54M,58I,71D,83L,87Q,92P,124V,128D,131R,148V,152E,153V,154K,169F,171I,180D,183G,200N,203R,207T,208G,225S
MT942830	175062_4	Rwanda	11-Feb-2008	genomic RNA		subtype: A1	1	231	6A,15V,27I,54M,58I,71D,83L,87Q,92P,124V,128D,131R,148V,152E,153V,154K,169F,171I,180D,183G,200N,203R,207T,208G,225S
MT942831	175062_5	Rwanda	11-Feb-2008	genomic RNA		subtype: A1	1	231	6A,15V,27I,54M,58I,71D,83L,87Q,92P,124V,128D,131R,148V,152E,153V,154K,169F,171I,180D,183G,200N,203R,207T,208G,225S
MT942832	175062_6_TF	Rwanda	11-Feb-2008	genomic RNA		subtype: A1	1	231	6A,15V,27I,54M,58I,71D,83L,87Q,92P,124V,128D,131R,148V,152E,153V,154K,169F,171I,180D,183G,200N,203R,207T,208G,225S
MT942833	175062_7	Rwanda	11-Feb-2008	genomic RNA		subtype: A1	1	231	6A,15V,27I,54M,58I,71D,83L,87Q,92P,124V,128D,131R,148V,152E,153V,154K,169F,171I,180D,183G,200N,203R,207T,208G,225S
MT942834	175062_8	Rwanda	11-Feb-2008	genomic RNA		subtype: A1	1	231	6A,15V,27I,54M,58I,71D,83L,87Q,92P,124V,128D,131R,148V,152E,153V,154K,169F,171I,180D,183G,200N,203R,207T,208G,225S
MT942835	175062_9	Rwanda	11-Feb-2008	genomic RNA		subtype: A1	1	231	6A,15V,27I,54M,58I,71D,83L,87Q,92P,124V,128D,131R,148V,152E,153V,154K,169F,171I,180D,183G,200N,203R,207T,208G,225S
MT942836	175065_1	Rwanda	24-Mar-2008	genomic RNA		subtype: A1	1	231	6A,11I,14P,15L,27I,31G,33N,54M,58I,71D,83L,91A,92P,111P,120G,128D,148V,154K,169F,171V,178T,191I,200S,203R,207T,208G
MT942837	175065_4	Rwanda	24-Mar-2008	genomic RNA		subtype: A1	1	231	6A,11I,14P,15L,27I,31G,33N,54M,58I,71D,83L,91A,92P,111P,120G,128D,148V,154K,169F,171V,178T,191I,200S,203R,207T,208G
MT942838	175065_5	Rwanda	24-Mar-2008	genomic RNA		subtype: A1	1	231	6A,11I,14P,15L,27I,31G,33N,54M,58I,71D,83L,91A,92P,111P,120G,128D,148V,154K,169F,171V,178T,191I,200S,203R,207T,208G
MT942839	175065_6	Rwanda	24-Mar-2008	genomic RNA		subtype: A1	1	231	6A,11I,14P,15L,27I,31G,33N,54M,58I,71D,83L,91A,92P,111P,120G,128D,148V,154K,169F,171V,178T,191I,200S,203R,207T,208G
MT942840	175065_7	Rwanda	24-Mar-2008	genomic RNA		subtype: A1	1	231	6A,11I,14P,15L,27I,31G,33N,54M,58I,71D,83L,91A,92P,111P,120G,128D,148V,154K,169F,171V,178T,191I,200S,203R,207T,208G
MT942841	175065_8	Rwanda	24-Mar-2008	genomic RNA		subtype: A1	1	231	6A,11I,14P,15L,27I,31G,33N,54M,58I,71D,83L,91A,92P,111P,120G,128D,148V,154K,169F,171V,178T,191I,200S,203R,207T,208G
MT942842	175071_P1_1	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942843	175071_P1_10	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942844	175071_P1_11	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942845	175071_P1_12	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942846	175071_P1_13	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942847	175071_P1_14	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942848	175071_P1_2	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942849	175071_P1_3	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942850	175071_P1_4	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942851	175071_P1_5	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942852	175071_P1_6	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942853	175071_P1_7	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942854	175071_P1_8	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942855	175071_P1_9	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942856	175071_P2_1	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942857	175071_P2_2	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942858	175071_P2_3	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942859	175071_P2_4	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942860	175071_P2_5	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942861	175071_P2_6	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942862	175071_P3_1	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942863	175071_P3_2	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942864	175071_P3_3	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942865	175071_P3_4	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942866	175071_P4	Rwanda	12-Jun-2008	genomic RNA		subtype: A1	1	231	6A,14T,27I,44A,54V,58I,71D,82K,83L,92P,111T,120G,148V,154K,169F,180D,183G,187D,203R,207A,208G,210S
MT942867	175072_1	Rwanda	28-May-2008	genomic RNA		subtype: C	1	231	6L,15L,27I,41T,50T,71D,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
MT942868	175072_10	Rwanda	28-May-2008	genomic RNA		subtype: C	1	231	6L,15L,27I,41T,50T,71D,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
MT942869	175072_2	Rwanda	28-May-2008	genomic RNA		subtype: C	1	231	6L,15L,27I,41T,50T,71D,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
MT942870	175072_3	Rwanda	28-May-2008	genomic RNA		subtype: C	1	231	6L,15L,27I,41T,50T,71D,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
MT942871	175072_4	Rwanda	28-May-2008	genomic RNA		subtype: C	1	231	6L,15L,27I,41T,50T,71D,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
MT942872	175072_5	Rwanda	28-May-2008	genomic RNA		subtype: C	1	231	6L,15L,27I,41T,50T,71D,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
MT942873	175072_6	Rwanda	28-May-2008	genomic RNA		subtype: C	1	231	6L,15L,27I,41T,50T,71D,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
MT942874	175072_7	Rwanda	28-May-2008	genomic RNA		subtype: C	1	231	6L,15L,27I,41T,50T,71D,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
MT942875	175074_P1_11	Rwanda	24-Jul-2008	genomic RNA		subtype: A1	1	231	2V,6A,9H,15L,27I,30R,31G,48A,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,183G,200S,203R,207T,208G,225S
MT942876	175074_P1_12	Rwanda	24-Jul-2008	genomic RNA		subtype: A1	1	231	2V,6A,9H,15L,27I,30R,31G,48A,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,183G,200S,203R,207T,208G,225S
MT942877	175074_P1_13	Rwanda	24-Jul-2008	genomic RNA		subtype: A1	1	231	2V,6A,9H,15L,27I,30R,31G,48A,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,183G,200S,203R,207T,208G,225S
MT942878	175074_P1_15_TF	Rwanda	24-Jul-2008	genomic RNA		subtype: A1	1	231	2V,6A,9H,15L,27I,30R,31G,48A,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,183G,200S,203R,207T,208G,225S
MT942879	175074_P1_16	Rwanda	24-Jul-2008	genomic RNA		subtype: A1	1	231	2V,6A,9H,15L,27I,30R,31G,48A,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,183G,200S,203R,207T,208G,225S
MT942880	175074_P1_2_TF	Rwanda	24-Jul-2008	genomic RNA		subtype: A1	1	231	2V,6A,9H,15L,27I,30R,31G,48A,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,183G,200S,203R,207T,208G,225S
MT942881	175074_P1_3	Rwanda	24-Jul-2008	genomic RNA		subtype: A1	1	231	2V,6A,9H,15L,27I,30R,31G,48A,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,183G,200S,203R,207T,208G,225S
MT942882	175074_P1_4	Rwanda	24-Jul-2008	genomic RNA		subtype: A1	1	231	2V,6A,9H,15L,27I,30R,31G,48A,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,183G,200S,203R,207T,208G,225S
MT942883	175074_P1_5	Rwanda	24-Jul-2008	genomic RNA		subtype: A1	1	231	2V,6A,9H,15L,27I,30R,31G,48A,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,183G,200S,203R,207T,208G,225S
MT942884	175074_P1_6	Rwanda	24-Jul-2008	genomic RNA		subtype: A1	1	231	2V,6A,9H,15L,27I,30R,31G,48A,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,183G,200S,203R,207T,208G,225S
MT942885	175074_P1_7	Rwanda	24-Jul-2008	genomic RNA		subtype: A1	1	231	2V,6A,9H,15L,27I,30R,31G,48A,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,183G,200S,203R,207T,208G,225S
MT942886	175074_P1_8	Rwanda	24-Jul-2008	genomic RNA		subtype: A1	1	231	2V,6A,9H,15L,27I,30R,31G,48A,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,183G,200S,203R,207T,208G,225S
MT942887	175074_P1_9	Rwanda	24-Jul-2008	genomic RNA		subtype: A1	1	231	2V,6A,9H,15L,27I,30R,31G,48A,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,183G,200S,203R,207T,208G,225S
MT942888	175074_P2_1	Rwanda	24-Jul-2008	genomic RNA		subtype: A1	1	231	2V,6A,9H,15L,27I,30R,31G,48A,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,183G,200S,203R,207T,208G,225S
MT942889	175079_1	Rwanda	19-Sep-2008	genomic RNA		subtype: A1	1	231	6A,14S,15V,27I,31G,36I,58I,71D,79D,83L,92P,111I,120S,128D,148V,169F,179P,180D,183T,187D,200S,203R,208G
MT942890	175079_10	Rwanda	19-Sep-2008	genomic RNA		subtype: A1	1	231	6A,14S,15V,27I,31G,36I,58I,71D,79D,83L,92P,111I,120S,128D,148V,169F,179P,180D,183T,187D,200S,203R,208G
MT942891	175079_2	Rwanda	19-Sep-2008	genomic RNA		subtype: A1	1	231	6A,14S,15V,27I,31G,36I,58I,71D,79D,83L,92P,111I,120S,128D,148V,169F,179P,180D,183T,187D,200S,203R,208G
MT942892	175079_3	Rwanda	19-Sep-2008	genomic RNA		subtype: A1	1	231	6A,14S,15V,27I,31G,36I,58I,71D,79D,83L,92P,111I,120S,128D,148V,169F,179P,180D,183T,187D,200S,203R,208G
MT942893	175079_4	Rwanda	19-Sep-2008	genomic RNA		subtype: A1	1	231	6A,14S,15V,27I,31G,36I,58I,71D,79D,83L,92P,111I,120S,128D,148V,169F,179P,180D,183T,187D,200S,203R,208G
MT942894	175079_5	Rwanda	19-Sep-2008	genomic RNA		subtype: A1	1	231	6A,14S,15V,27I,31G,36I,58I,71D,79D,83L,92P,111I,120S,128D,148V,169F,179P,180D,183T,187D,200S,203R,208G
MT942895	175079_6	Rwanda	19-Sep-2008	genomic RNA		subtype: A1	1	231	6A,14S,15V,27I,31G,36I,58I,71D,79D,83L,92P,111I,120S,128D,148V,169F,179P,180D,183T,187D,200S,203R,208G
MT942896	175079_7_TF	Rwanda	19-Sep-2008	genomic RNA		subtype: A1	1	231	6A,14S,15V,27I,31G,36I,58I,71D,79D,83L,92P,111I,120S,128D,148V,169F,179P,180D,183T,187D,200S,203R,208G
MT942897	175079_8	Rwanda	19-Sep-2008	genomic RNA		subtype: A1	1	231	6A,14S,15V,27I,31G,36I,58I,71D,79D,83L,92P,111I,120S,128D,148V,169F,179P,180D,183T,187D,200S,203R,208G
MT942898	175079_9	Rwanda	19-Sep-2008	genomic RNA		subtype: A1	1	231	6A,14S,15V,27I,31G,36I,58I,71D,79D,83L,92P,111I,120S,128D,148V,169F,179P,180D,183T,187D,200S,203R,208G
MT942899	175089_1	Rwanda	15-Dec-2009	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,31G,54M,58I,71D,83L,92P,111T,120G,128D,148V,154K,169F,178T,180D,187D,200S,207T,208G
MT942900	175089_11	Rwanda	15-Dec-2009	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,31G,54M,58I,71D,83L,92P,111T,120G,128D,148V,154K,169F,178T,180D,187D,200S,207T,208G
MT942901	175089_12	Rwanda	15-Dec-2009	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,31G,54M,58I,71D,83L,92P,111T,120G,128D,148V,154K,169F,178T,180D,187D,200S,207T,208G
MT942902	175089_14	Rwanda	15-Dec-2009	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,31G,54M,58I,71D,83L,92P,111T,120G,128D,148V,154K,169F,178T,180D,187D,200S,207T,208G
MT942903	175089_15	Rwanda	15-Dec-2009	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,31G,54M,58I,71D,83L,92P,111T,120G,128D,148V,154K,169F,178T,180D,187D,200S,207T,208G
MT942904	175089_16	Rwanda	15-Dec-2009	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,31G,54M,58I,71D,83L,92P,111T,120G,128D,148V,154K,169F,178T,180D,187D,200S,207T,208G
MT942905	175089_18	Rwanda	15-Dec-2009	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,31G,54M,58I,71D,83L,92P,111T,120G,128D,148V,154K,169F,178T,180D,187D,200S,207T,208G
MT942906	175089_19	Rwanda	15-Dec-2009	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,31G,54M,58I,71D,83L,92P,111T,120G,128D,148V,154K,169F,178T,180D,187D,200S,207T,208G
MT942907	175089_2	Rwanda	15-Dec-2009	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,31G,54M,58I,71D,83L,92P,111T,120G,128D,148V,154K,169F,178T,180D,187D,200S,207T,208G
MT942908	175089_3	Rwanda	15-Dec-2009	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,31G,54M,58I,71D,83L,92P,111T,120G,128D,148V,154K,169F,178T,180D,187D,200S,207T,208G
MT942909	175089_4	Rwanda	15-Dec-2009	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,31G,54M,58I,71D,83L,92P,111T,120G,128D,148V,154K,169F,178T,180D,187D,200S,207T,208G
MT942910	175089_5	Rwanda	15-Dec-2009	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,31G,54M,58I,71D,83L,92P,111T,120G,128D,148V,154K,169F,178T,180D,187D,200S,207T,208G
MT942911	175089_6	Rwanda	15-Dec-2009	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,31G,54M,58I,71D,83L,92P,111T,120G,128D,148V,154K,169F,178T,180D,187D,200S,207T,208G
MT942912	175089_7	Rwanda	15-Dec-2009	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,31G,54M,58I,71D,83L,92P,111T,120G,128D,148V,154K,169F,178T,180D,187D,200S,207T,208G
MT942913	175089_8	Rwanda	15-Dec-2009	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,31G,54M,58I,71D,83L,92P,111T,120G,128D,148V,154K,169F,178T,180D,187D,200S,207T,208G
MT942914	175089_TF	Rwanda	15-Dec-2009	genomic RNA		subtype: A1C	1	231	6A,11I,14S,15L,27I,31G,54M,58I,71D,83L,92P,111T,120G,128D,148V,154K,169F,178T,180D,187D,200S,207T,208G
MT942915	175090_1	Rwanda	15-Apr-2010	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15M,26A,27I,30R,44A,54M,58I,71D,83L,91A,92P,96L,111P,120G,148V,153V,154K,169F,171I,180D,183G,191I,200S,203R,207A,208G,210S,225S
MT942916	175090_10	Rwanda	15-Apr-2010	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15M,27I,30R,44A,54M,58I,71D,83L,91A,92P,96L,111P,120G,148V,153V,154K,169F,171I,180D,183G,191I,200S,203R,207A,208G,210S,225S
MT942917	175090_11	Rwanda	15-Apr-2010	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15M,27I,30R,44A,54M,58I,71D,83L,91A,92P,96L,111P,120G,148V,153V,154K,169F,171I,180D,183G,191I,200S,203R,207A,208G,210S,225S
MT942918	175090_12	Rwanda	15-Apr-2010	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15M,27I,30R,44A,54M,58I,71D,83Q,91A,92P,96L,111P,120G,148V,153V,154K,169F,171I,180D,183G,191I,200S,203R,207A,208G,210S,225S
MT942919	175090_13	Rwanda	15-Apr-2010	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15M,27I,30R,44A,54M,58I,70R,71D,83Q,91A,92P,96L,111P,120G,148V,153V,154K,169F,171I,180D,183G,191I,200S,203R,207A,208G,210S,225S
MT942920	175090_2	Rwanda	15-Apr-2010	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15M,26A,27I,30R,44A,54M,58I,71D,83L,91A,92P,96L,111P,120G,148V,153V,154K,169F,171I,180D,183G,191I,200S,203R,207A,208G,210S,225S
MT942921	175090_3	Rwanda	15-Apr-2010	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15M,16A,27I,30R,44A,54M,58I,71D,83Q,91A,92P,96L,111P,120G,148V,153V,154K,169F,171I,180D,183G,191I,200S,203R,207A,208G,210S,225S
MT942922	175090_5	Rwanda	15-Apr-2010	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15M,27I,30R,44A,54M,58I,71D,83L,91A,92P,96L,111P,120G,148V,153V,154K,169F,171I,180D,183G,191I,200S,203R,207A,208G,210S,225S
MT942923	175090_6	Rwanda	15-Apr-2010	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15M,27I,30R,44A,54M,58I,71D,83L,91A,92P,96L,111P,120G,148V,153V,154K,169F,171I,180D,183G,191I,200S,203R,207A,208G,210S,225S
MT942924	175090_7	Rwanda	15-Apr-2010	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15M,27I,30R,44A,54M,58I,71D,83L,91A,92P,96L,111P,120G,148V,153V,154K,169F,171I,180D,183G,191I,200S,203R,207A,208G,210S,225S
MT942925	175090_8	Rwanda	15-Apr-2010	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15M,27I,30R,44A,54M,58I,71D,83L,91A,92P,96L,111P,120G,148V,153V,154K,169F,171I,180D,183G,191I,200S,203R,207A,208G,210S,225S
MT942926	175090_9	Rwanda	15-Apr-2010	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15M,27I,30R,44A,54M,58I,71D,83L,91A,92P,96L,111P,120G,148V,153V,154K,169F,171I,180D,183G,191I,200S,203R,207A,208G,210S,225S
MT942927	175090_P1_TF	Rwanda	15-Apr-2010	genomic RNA		subtype: A1	1	231	6A,11I,12Y,15M,27I,30R,44A,54M,58I,71D,83L,91A,92P,96L,111P,120G,148V,153V,154K,169F,171I,180D,183G,191I,200S,203R,207A,208G,210S,225S
MT942928	175092_1	Rwanda	08-Jun-2010	genomic RNA		subtype: A1	1	231	6A,10P,14S,15L,27I,54M,58I,71D,83L,86I,92P,111P,120G,128D,148V,154K,169F,171C,180D,187D,200N,203R,208G
MT942929	175092_2	Rwanda	08-Jun-2010	genomic RNA		subtype: A1	1	231	6A,10P,14S,15L,27I,54M,58I,71D,83L,86I,92P,111P,120G,128D,148V,154K,169F,171C,180D,187D,200N,203R,208G
MT942930	175092_3	Rwanda	08-Jun-2010	genomic RNA		subtype: A1	1	231	6A,10P,14S,15L,27I,54M,58I,71D,83L,86I,92P,111P,120G,128D,148V,154K,169F,171C,180D,187D,200N,203R,208G
MT942931	175092_4	Rwanda	08-Jun-2010	genomic RNA		subtype: A1	1	231	6A,10P,14S,15L,27I,54M,58I,71D,83L,86I,92P,111P,120G,128D,148V,154K,169F,171C,180D,187D,200N,203R,208G
MT942932	175093_1	Rwanda	09-Jul-2010	genomic RNA		subtype: A1	1	231	6A,14T,15L,27I,31G,47G,50G,54M,58I,71D,83L,86A,87Q,92P,96I,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,180D,200S,203R,207Q,208G
MT942933	175093_10	Rwanda	09-Jul-2010	genomic RNA		subtype: A1	1	231	6A,14T,15L,27I,31G,47G,50G,54M,58I,71D,83L,86A,87Q,92P,96I,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,180D,200S,203R,207Q,208G
MT942934	175093_11	Rwanda	09-Jul-2010	genomic RNA		subtype: A1	1	231	6A,14T,15L,27I,31G,47G,50G,54M,58I,71D,83L,86A,87Q,92P,96I,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,180D,200S,203R,207Q,208G
MT942935	175093_12	Rwanda	09-Jul-2010	genomic RNA		subtype: A1	1	231	6A,14T,15L,27I,31G,36E,47G,50G,54M,58I,71D,83L,86A,87Q,92P,96I,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,180D,200S,203R,207Q,208G
MT942936	175093_13	Rwanda	09-Jul-2010	genomic RNA		subtype: A1	1	231	6A,14T,15L,27I,31G,47G,50G,54M,58I,71D,83L,86A,87Q,92P,96I,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,180D,200S,203R,207Q,208G
MT942937	175093_14	Rwanda	09-Jul-2010	genomic RNA		subtype: A1	1	231	6A,14T,15L,27I,31G,47G,50G,54M,58I,71D,83L,86A,87Q,92P,96I,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,180D,200S,203R,207Q,208G
MT942938	175093_15	Rwanda	09-Jul-2010	genomic RNA		subtype: A1	1	231	6A,14T,15L,27I,31G,47G,50G,54M,58I,71D,83L,86A,87Q,92P,96I,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,180D,200S,203R,207Q,208G
MT942939	175093_2	Rwanda	09-Jul-2010	genomic RNA		subtype: A1	1	231	6A,14T,15L,27I,31G,47G,50G,54M,58I,71D,83L,86A,87Q,92P,96I,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,180D,200S,203R,207Q,208G
MT942940	175093_3	Rwanda	09-Jul-2010	genomic RNA		subtype: A1	1	231	6A,14T,15L,27I,31G,47G,50G,54M,58I,71D,83L,86A,87Q,92P,96I,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,180D,200S,203R,207Q,208G
MT942941	175093_4_TF	Rwanda	09-Jul-2010	genomic RNA		subtype: A1	1	231	6A,14T,15L,27I,31G,47G,50G,54M,58I,71D,83L,86A,87Q,92P,96I,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,180D,200S,203R,207Q,208G
MT942942	175093_5	Rwanda	09-Jul-2010	genomic RNA		subtype: A1	1	231	6A,14T,15L,27I,31G,47G,50G,54M,58I,71D,83L,86A,87Q,92P,96I,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,180D,200S,203R,207Q,208G
MT942943	175093_6	Rwanda	09-Jul-2010	genomic RNA		subtype: A1	1	231	6A,14T,15L,27I,31G,36A,47G,50G,54M,58I,71D,83L,86A,87Q,92P,96I,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,180D,200S,203R,207Q,208G
MT942944	175093_7	Rwanda	09-Jul-2010	genomic RNA		subtype: A1	1	231	6A,14T,15L,27I,31G,47G,50G,54M,58I,71D,83L,86A,87Q,92P,96I,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,180D,200S,203R,207Q,208G
MT942945	175093_8	Rwanda	09-Jul-2010	genomic RNA		subtype: A1	1	231	6A,14T,15L,27I,31G,47G,50G,54M,58I,71D,83L,86A,87Q,92P,96I,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,180D,200S,203R,207Q,208G
MT942946	175093_9	Rwanda	09-Jul-2010	genomic RNA		subtype: A1	1	231	6A,14T,15L,27I,31G,36E,47G,50G,54M,58I,71D,83L,86A,87Q,92P,96I,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,180D,200S,203R,207Q,208G
MT942955	175094_1_TF	Rwanda	14-Oct-2010	genomic RNA		subtype: A1	1	231	6A,11M,14N,15L,27I,54M,58I,71D,83T,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G
MT942947	175094_10	Rwanda	14-Oct-2010	genomic RNA		subtype: A1	1	231	6A,11M,14N,15L,27I,54M,58I,71D,83T,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G
MT942948	175094_11	Rwanda	14-Oct-2010	genomic RNA		subtype: A1	1	231	6A,11M,14N,15L,27I,54M,58I,71D,83T,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G
MT942949	175094_12	Rwanda	14-Oct-2010	genomic RNA		subtype: A1	1	231	6A,11M,14N,15L,27I,54M,58I,71D,83T,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G
MT942950	175094_13	Rwanda	14-Oct-2010	genomic RNA		subtype: A1	1	231	6A,11M,14N,15L,27I,54M,58I,71D,83T,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G
MT942951	175094_14	Rwanda	14-Oct-2010	genomic RNA		subtype: A1	1	231	6A,11M,14N,15L,27I,54M,58I,71D,83T,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G
MT942952	175094_15	Rwanda	14-Oct-2010	genomic RNA		subtype: A1	1	231	6A,11M,14N,15L,27I,54M,58I,71D,83T,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G
MT942953	175094_16	Rwanda	14-Oct-2010	genomic RNA		subtype: A1	1	231	6A,11M,14N,15L,27I,54M,58I,71D,83T,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G
MT942954	175094_17	Rwanda	14-Oct-2010	genomic RNA		subtype: A1	1	231	6A,11M,14N,15L,27I,54M,58I,71D,83T,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G
MT942956	175094_5	Rwanda	14-Oct-2010	genomic RNA		subtype: A1	1	231	6A,11M,14N,15L,27I,54M,58I,71D,83T,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G
MT942957	175094_6	Rwanda	14-Oct-2010	genomic RNA		subtype: A1	1	231	6A,11M,14N,15L,27I,54M,58I,71D,83T,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G
MT942958	175094_7	Rwanda	14-Oct-2010	genomic RNA		subtype: A1	1	231	6A,11M,14N,15L,27I,54M,58I,71D,83T,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G
MT942959	175094_8	Rwanda	14-Oct-2010	genomic RNA		subtype: A1	1	231	6A,11M,14N,15L,27I,54M,58I,71D,83T,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G
MT942960	175094_9	Rwanda	14-Oct-2010	genomic RNA		subtype: A1	1	231	6A,11M,14N,15L,27I,54M,58I,71D,83T,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G
MT942964	175097_1_TF	Rwanda	18-Mar-2011	genomic RNA		subtype: CD	1	231	6L,15L,27I,36I,41T,71D,83M,91V,116A,124V,128D,146C,148V,154K,169F,178T,207T,208G,225S
MT942961	175097_10	Rwanda	18-Mar-2011	genomic RNA		subtype: CD	1	231	6L,15L,27I,36I,41T,71D,83M,91V,116A,124V,128D,146C,148V,154K,169F,178T,207T,208G,225S
MT942962	175097_11	Rwanda	18-Mar-2011	genomic RNA		subtype: CD	1	231	6L,15L,27I,36I,41T,71D,83M,91V,116A,124V,128D,146C,148V,154K,169F,178T,207T,208G,225S
MT942963	175097_12	Rwanda	18-Mar-2011	genomic RNA		subtype: CD	1	231	6L,15L,27I,36I,41T,71D,83M,91V,116A,124V,128D,146C,148V,154K,169F,178T,207T,208G,225S
MT942965	175097_2	Rwanda	18-Mar-2011	genomic RNA		subtype: CD	1	231	6L,15L,27I,36I,41T,71D,83M,91V,116A,124V,128D,146C,148V,154K,169F,178T,207T,208G,225S
MT942966	175097_3	Rwanda	18-Mar-2011	genomic RNA		subtype: CD	1	231	6L,15L,27I,36I,41T,71D,83M,91V,116A,124V,128D,146C,148V,154K,169F,178T,207T,208G,225S
MT942967	175097_4	Rwanda	18-Mar-2011	genomic RNA		subtype: CD	1	231	6L,15L,27I,36I,41T,71D,83M,91V,116A,124V,128D,146C,148V,154K,169F,178T,207T,208G,225S
MT942968	175097_5	Rwanda	18-Mar-2011	genomic RNA		subtype: CD	1	231	6L,15L,27I,36I,41T,71D,83M,91V,116A,124V,128D,146C,148V,154K,169F,178T,207T,208G,225S
MT942969	175097_6	Rwanda	18-Mar-2011	genomic RNA		subtype: CD	1	231	6L,15L,27I,36I,41T,71D,83M,91V,116A,124V,128D,146C,148V,154K,169F,178T,207T,208G,225S
MT942970	175097_7	Rwanda	18-Mar-2011	genomic RNA		subtype: CD	1	231	6L,15L,27I,36I,41T,71D,83M,91V,116A,124V,128D,146C,148V,154K,169F,178T,207T,208G,225S
MT942971	175097_8	Rwanda	18-Mar-2011	genomic RNA		subtype: CD	1	231	6L,15L,27I,36I,41T,71D,83M,91V,116A,124V,128D,146C,148V,154K,169F,178T,207T,208G,225S
MT942972	175097_9	Rwanda	18-Mar-2011	genomic RNA		subtype: CD	1	231	6L,15L,27I,36I,41T,71D,83M,91V,116A,124V,128D,146C,148V,154K,169F,178T,207T,208G,225S
MZ642266	BUS_71F_Con	Rwanda	10-Jul-2019	genomic RNA	plasma	subtype: A1	1	231	6A,10W,11I,14C,15L,31G,54M,58I,71D,92P,110N,111I,113D,120G,148V,154K,169F,178T,179A,183G,200S,207T,208G
MZ642263	GIT_84F_Con	Rwanda	01-Aug-2019	genomic RNA	plasma	subtype: A1	1	231	6A,10W,11T,14V,15V,27I,36I,58I,71D,83L,92P,111I,121T,128D,148V,154K,169F,171A,180D,183G,187D,200S,203R,207S,208G
MZ642262	GWE_47F_Con	Rwanda	10-Oct-2018	genomic RNA	plasma	subtype: A1	1	231	6A,15L,27I,30R,31G,48I,54M,58I,71D,83L,92P,96L,111P,120G,128D,148V,154K,169F,178T,183G,200S,203R,208G,210S
MZ642269	GWE_68F_Con	Rwanda	25-Jun-2019	genomic RNA	plasma	subtype: A1	1	231	6A,15V,27I,54M,58I,71D,83L,87Q,92P,96L,111P,120G,128D,148V,154K,169F,178T,183G,203R,207A,208G
MZ642272	KAG_34F_Con	Rwanda	10-Nov-2017	genomic RNA	plasma	subtype: A1/C/D	1	231	6A,14G,15L,27I,33N,54M,58V,71D,83L,92P,107A,111I,120G,128D,148V,154K,169F,171A,178T,183S,187D,200S,208G
MZ642264	KIN_18F_Con	Rwanda	17-Mar-2017	genomic RNA	plasma	subtype: A1	1	231	6A,10W,11IT,15V,27I,54M,58I,71D,83L,87Q,92P,96L,111P,120G,148V,154K,169F,178T,183G,203R,207A,208G,226HQ
MZ642267	MAS_1F_Con	Rwanda	18-Aug-2016	genomic RNA	plasma	subtype: A1	1	231	2V,3M,6A,11I,12Y,14N,15M,27I,31G,33N,54L,58I,71D,83L,87Q,92P,111P,120S,128D,148V,154K,169F,171I,178T,183G,191I,200S,203R,207T,208G,225S
MZ642261	MAS_21F_Con	Rwanda	30-Mar-2017	genomic RNA	plasma	subtype: A1	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83T,92P,96I,111I,116A,120G,124V,128D,148V,154K,169F,178T,180D,191I,200S,203R,208G,210S
MZ642271	MAS_6M_Con	Rwanda	22-Nov-2016	genomic RNA	plasma	subtype: A1/C	1	231	6T,11I,14N,15L,27I,31G,54M,58I,71D,92P,111P,120S,128D,148V,154K,169F,178T,183G,200S,203R,207T,208G
MZ642279	MAS_7F_Con	Rwanda	23-Nov-2016	genomic RNA	plasma	subtype: A1/C	1	231	6L,14N,27I,41T,45D,54A,58I,59I,71D,83L,87Q,91V,96I,116T,128D,148V,154K,169F,171V,178T,180D,187D,203R,208G
MZ642268	MAT_81F_Con	Rwanda	24-Jul-2019	genomic RNA	plasma	subtype: A1/C/D	1	231	6V,11I,12S,14P,15M,27I,29D,31G,54M,58I,71D,83L,111P,115V,116A,128D,148V,169F,178T,180D,200S,203R,207A,208G,225S
MZ642270	NGA_76F_Con	Rwanda	17-Jul-2019	genomic RNA	plasma	subtype: A1/C	1	231	6A,10Y,12N,14P,15L,27I,30R,31G,54M,58I,71D,83L,92P,111P,120G,128D,148V,154K,169F,178T,180D,200S,203R,207A,208G
MZ642280	NGA_77F_Con	Rwanda	17-Jul-2019	genomic RNA	plasma	subtype: A1/C	1	231	6A,41T,71D,83L,91P,96L,116Q,148V,154K,169F,178T,180D,187D,203R,208G
MZ642277	PSF_24M_Con	Rwanda	02-Jun-2017	genomic RNA	plasma	subtype: A1/C	1	231	6H,41T,58A,71D,83T,91V,116A,120G,128D,148V,154K,169F,171C,178T,180D,187D,191I,203R,204G,207Q,208G,225S
MZ642276	PSF_33M_Con	Rwanda	20-Oct-2017	genomic RNA	plasma	subtype: A1/C	1	231	6H,41T,58A,71D,83T,91V,116A,120G,128D,148V,154K,169F,171C,178T,180D,187D,203R,204G,207Q,208G,225S
MZ642265	PSF_36F_Con	Rwanda	04-Jan-2018	genomic RNA	plasma	subtype: A1/C	1	231	6A,11I,12N,14P,15L,27I,29D,54M,58V,71D,83L,86A,91V,92P,111I,120G,123A,128D,132K,139H,148V,169F,177C,178T,180D,203R,208G
MZ642275	PSF_38M_Con	Rwanda	17-Sep-2018	genomic RNA	plasma	subtype: A1/C	1	231	6H,41T,58A,71D,83T,91V,116A,120G,126L,128D,148V,154K,169F,171C,178T,180D,187D,204G,207Q,208G,225S
MZ642274	PSF_39M_Con	Rwanda	17-Feb-2018	genomic RNA	plasma	subtype: A1/C	1	231	6H,41T,58A,71D,83T,91V,116A,120G,126L,128D,148V,154K,169F,171C,178T,180D,187D,203R,204G,207Q,208G,225S
MZ642278	PSF_3M_Con	Rwanda	21-Oct-2016	genomic RNA	plasma	subtype: A1/C	1	231	6H,41T,58A,71D,83T,91V,116A,120G,148V,154K,169F,171C,178T,180D,187D,203R,204G,207Q,208G,225S
MZ642273	PSF_80M_Con	Rwanda	19-Jul-2019	genomic RNA	plasma	subtype: C	1	231	6L,15L,31G,33N,41T,71D,83L,91V,116A,120S,128D,148V,154K,160S,169F,177C,178T,180D,187D,203R,208G
MZ642260	REM_29F_Con	Rwanda	24-Aug-2017	genomic RNA	plasma	subtype: A1	1	231	6A,11I,15V,27I,50T,54M,58I,71D,83T,92P,111T,120S,124V,128D,148V,154K,169F,171V,180D,187D,191I,203R,208G,225S

Genbank References: capsid (p24)

Database

Resources

Team