Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Manasa (2017)	Evolution of gag and gp41 in Patients Receiving Ritonavir-Boosted Protease Inhibitors	Sci Rep 7 (1), 11559 (2017)	5.57e-170	88	61	ART	Plasma	Direct PCR	Miscellaneous

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Accession	IsolateName	Country	Coll Date	MolType	Source	Note	FirstAA	LastAA	MutList
KT339951	CA123455	USA	2008	genomic RNA	plasma	post-protease inhibitor therapy	1	231	14P,83L,91V,154K,178T,194S,208G
KY579815	CA123524	USA	2008	genomic RNA	plasma		1	231	6A,14P,15V,31G,33N,41A,58I,83L,92P,107S,120S,123S,132K,141V,148V,178T,199R,200S,207A,208G,216A,225S
KY579818	CA123666	USA	2008	genomic RNA	plasma		1	231	6L,180D,208G
KT339966	CA124063	USA	2008	genomic RNA	plasma	pre-protease inhibitor therapy	1	231	6L,15L,83L,120H,148A,208G
KT339961	CA126276	USA	2008	genomic RNA	plasma	post-protease inhibitor therapy	1	231	6L,33N,36I,41A,75D,83L,86A,87Q,91V,120S,128D,132K,136I,148I,177C,178T,180D
KT339964	CA126294	USA	2008	genomic RNA	plasma	pre-protease inhibitor therapy	1	231	6L,41T,83L,91N,92P,116A,154K,209C
KT339968	CA126634	USA	2008	genomic RNA	plasma	pre-protease inhibitor therapy	1	231	6L,33N,36I,41A,75D,83L,86A,87Q,91V,120S,128D,132K,136I,148I,177C,178T,180D
KT339952	CA134482	USA	2009	genomic RNA	plasma	pre-protease inhibitor therapy	1	231	6L,14S,15L,41T,83L,87Q,91V,120S,136M,180D,208G,209C,210S
KY579841	CA134487	USA	2009	genomic RNA	plasma		1	231	6L,15L,27I,83L,120H,148V,225S
KY579843	CA134521	USA	2009	genomic RNA	plasma		1	231	6L,14P,27I,41T,83L,110N,116A,124V,148V,180D,220EG,225S
KY579845	CA152374	USA	2010	genomic RNA	plasma		1	231	6L,41A,83L,120S,124T
KT339949	CA152397	USA	2009	genomic RNA	plasma	post-protease inhibitor therapy	1	231	6M,41V,83L,120S,125Q,135V,148V,180D
KT339965	CA175511	USA	2011	genomic RNA	plasma	post-protease inhibitor therapy	1	231	6L,41T,83L,91N,92P,116A,120S,154K,209C
KT339953	CA191718	USA	2011	genomic RNA	plasma	post-protease inhibitor therapy	1	231	6L,14S,15L,41T,83L,87Q,91V,120S,136M,180D,208G,209C,210S
KT339959	CA191765	USA	2011	genomic RNA	plasma	post-protease inhibitor therapy	1	231	6L,15L,27I,83L,116A,148V
KT339967	CA191786	USA	2011	genomic RNA	plasma	post-protease inhibitor therapy	1	231	6L,15L,83L,120H,148A,208G
KT339955	CA212465	USA	2012	genomic RNA	plasma	post-protease inhibitor therapy	1	231	6L,83L,116A,128D,136M,178T,180D
KY579817	CA212607	USA	2012	genomic RNA	plasma		1	231	6M,14P,41T,83L,116A,120S,123A,180D
KY579819	CA212611	USA	2012	genomic RNA	plasma		1	231	6L,91V,208G
KT339969	CA234060	USA	2013	genomic RNA	plasma	post-protease inhibitor therapy	1	231	6L,33N,36I,41A,75D,83L,86A,87Q,91V,120S,128D,132K,136I,148I,177C,178T,180D
KY579838	CA24499	USA	2001	genomic RNA	plasma		1	231	6M,15L,41T,83L,148S,154K,194S,208G
KY579840	CA58118	USA	2005	genomic RNA	plasma		1	231	6L,27I,83L,120H,148V,225S
KT339954	CA61069	USA	2005	genomic RNA	plasma	pre-protease inhibitor therapy	1	231	6L,83L,116A,128D,136M,178T
KY579839	CA64014	USA	2006	genomic RNA	plasma		1	231	6M,15L,41T,83L,120H,148S,154K,194S,208G
KY579842	CA79728	USA	2006	genomic RNA	plasma		1	231	6L,27I,41T,83L,110N,116A,124V,148V,180D,225S
KY579844	CA84398	USA	2007	genomic RNA	plasma		1	231	6L,41A,83L,120S,124T
KT339958	CA88415	USA	2007	genomic RNA	plasma	pre-protease inhibitor therapy	1	231	6L,15L,27I,83L,87Q,91V,116A,148V
KY579814	CA95401	USA	2007	genomic RNA	plasma		1	231	6A,14P,15V,31G,33N,41A,58I,83L,92P,107S,120S,123S,128D,132K,141V,148V,178T,183NT,199R,200S,207A,208G,216A,225S
KT339960	CA95488	USA	2007	genomic RNA	plasma	pre-protease inhibitor therapy	1	231	6L,33N,36I,41A,75D,83L,86A,87Q,91V,120S,128D,132K,136I,148I,177C,178T,180D
KY579816	CA95697	USA	2008	genomic RNA	plasma		1	231	6M,14P,83L,91IV,116A,120NS,123A,180D
KY579860	MK119w0	USA	2005	genomic RNA	plasma		1	231	6L,14S,15L,27I,41T,120S,148V,154K,180D,225S
KY579861	MK119w112	USA	2007	genomic RNA	plasma		1	231	6L,14S,15L,27I,41T,120S,148V,154K,180D,225S
KY579878	MK133w0	USA	2005	genomic RNA	plasma		1	231	6V,14P,83L,116A,180D,225S,230I
KY579879	MK133w70	USA	2007	genomic RNA	plasma		1	231	6V,14P,83L,116A,180D,225S,230I
KY579870	MK161w0	USA	2005	genomic RNA	plasma		1	231	6L,50A,83L,91V,128D,199R
KY579871	MK161w174	USA	2009	genomic RNA	plasma		1	231	6L,50A,79EK,83L,91IV,128D,199R
KY579872	MK179w0	USA	2005	genomic RNA	plasma		1	231	6L,16T,27I,79D,83L,91V,120S,136M,148V,178PT
KY579873	MK179w48	USA	2006	genomic RNA	plasma		1	231	6L,14P,15L,27I,79D,83L,91IV,116AG,136M,148V
KY579864	MK18w0	USA	2005	genomic RNA	plasma		1	231	6L,83L,136M,148I,180D
KY579865	MK18w97	USA	2007	genomic RNA	plasma		1	231	6L,83L,136M,148I,180D
KY579846	MK193w0	USA	2005	genomic RNA	plasma		1	231	6L,14P,27I,79D,83L,148V,171V,200N,225S,230I
KY579847	MK193w88	USA	2007	genomic RNA	plasma		1	231	6L,14P,27I,79D,83L,91V,120S,148V,171V,200N,225S,230I
KY579854	MK194w0	USA	2005	genomic RNA	plasma		1	231	6L,15L,27I,41T,71D,83L,91AV,148V,154K,180D
KY579855	MK194w86	USA	2007	genomic RNA	plasma		1	231	6L,15L,27I,41T,71D,83L,91V,148V,154K,180D
KY579880	MK210w0	USA	2005	genomic RNA	plasma		1	231	6L,83L,178T
KY579881	MK210w53	USA	2006	genomic RNA	plasma		1	231	6L,83L,178T
KY579884	MK213w0	USA	2005	genomic RNA	plasma		1	231	6L,83L,86A,87Q,96I,116T
KY579885	MK213w111	USA	2007	genomic RNA	plasma		1	231	6L,83L,86A,87Q,96I,116T
KY579866	MK217w0	USA	2005	genomic RNA	plasma		1	231	6L,14S,83L,91V,120S,136M,154K,170R,180D,194S
KY579867	MK217w39	USA	2006	genomic RNA	plasma		1	231	6L,14S,83L,91V,120S,136M,154K,170R,180D,194S
KY579848	MK223w0	USA	2005	genomic RNA	plasma		1	231	83L,154K
KY579849	MK223w52	USA	2006	genomic RNA	plasma		1	231	83L,154K
KY579868	MK247w0	USA	2005	genomic RNA	plasma		1	231	14P,83I,91V,120S
KY579869	MK247w116	USA	2007	genomic RNA	plasma		1	231	14P,83I,87HQ,91V,120S
KY579874	MK262w0	USA	2005	genomic RNA	plasma		1	231	6L,15L,27I,83L,116A,148V,178T
KY579875	MK262w25	USA	2006	genomic RNA	plasma		1	231	6L,15L,27I,83L,116A,148V,178T
KY579876	MK42w0	USA	2005	genomic RNA	plasma		1	231	6L,83L,136M,191IV,225S
KY579877	MK42w62	USA	2006	genomic RNA	plasma		1	231	6L,83L,136M,225S
KY579850	MK51w0	USA	2005	genomic RNA	plasma		1	231	6L,14T,15M,31G,33N,83L,87Q,91V,96L,110N,116A,120H,148V,180D,208G,210S
KY579851	MK51w112	USA	2007	genomic RNA	plasma		1	231	6L,14T,15M,31G,33N,83L,87Q,91V,96L,110N,116A,120H,148V,180D,208G,210S
KY579858	MK69w0	USA	2005	genomic RNA	plasma		1	231	6L,83L,87Q,91V,96I,115V,116T,120S,123A
KY579859	MK69w78	USA	2007	genomic RNA	plasma		1	231	6L,83L,116T,120S,123A
KY579882	MK70w0	USA	2005	genomic RNA	plasma		1	231	6L,14S,27I,83L,120H,124V,148V,180D
KY579883	MK70w100	USA	2007	genomic RNA	plasma		1	231	6L,14S,27I,83L,120H,124V,148V,180D
KY579862	MK85w0	USA	2005	genomic RNA	plasma		1	231	6V,14P,120H,154K,194S
KY579863	MK85w163	USA	2008	genomic RNA	plasma		1	231	6V,14P,120H,154K,194S
KY579852	MK86w0	USA	2005	genomic RNA	plasma		1	231	6L,27I,41A,83L,132K,136M,148V,154K,178T
KY579853	MK86w135	USA	2008	genomic RNA	plasma		1	231	6L,27I,41A,83L,132K,136M,148I,154K,178T
KY579856	MK98w0	USA	2005	genomic RNA	plasma		1	231	6L,14N,27I,83L,87Q,91V,96V,116A,120H,148V
KY579857	MK98w98	USA	2007	genomic RNA	plasma		1	231	6L,14N,27I,83L,91A,96V,116A,148V
KY579820	MKX501w0	USA	2007	genomic RNA	plasma		1	231	6M,14P,27I,83L,91V,123A,148V,183G,208AG,225S,230I
KY579821	MKX501w52	USA	2008	genomic RNA	plasma		1	231	6M,14P,27I,83L,91V,120S,123A,148V,183G,225S,230I
KY579822	MKX502w0	USA	2007	genomic RNA	plasma		1	231	6A,14P,15M,27I,31G,33N,41T,54M,58I,59I,71D,83T,92P,107S,120S,123A,124V,135V,148V,154K,169F,178T,180D,200S,203R,207A,208G,210S,225S
KY579823	MKX502w52	USA	2008	genomic RNA	plasma		1	231	6A,14P,15M,27I,31G,33N,41T,54M,58I,59I,71D,83T,92P,107S,120S,123A,124V,135V,148V,154K,169F,178T,180D,200S,203R,207A,208G,210S,225S
KY579824	MKX503w0	USA	2007	genomic RNA	plasma		1	231	4R,5D,9H,83L,154K,177C,178T,194S
KY579825	MKX503w52	USA	2008	genomic RNA	plasma		1	231	4R,5D,9H,83L,154K,177C,178T,180D,194S
KY579826	MKX504w0	USA	2007	genomic RNA	plasma		1	231	6L,14P,15L,16A,27I,79D,83L,86P,87Q,91V,120S,148V,208G,225S
KY579827	MKX504w52	USA	2008	genomic RNA	plasma		1	231	6L,14P,15L,16A,27I,79D,83L,86P,87Q,91V,120S,148V,208G,225S
KY579828	MKX505w0	USA	2007	genomic RNA	plasma		1	231	6V,27I,83L,91V,96L,116A,120H,136M,148V
KY579829	MKX505w52	USA	2008	genomic RNA	plasma		1	231	6V,27I,83L,91V,96L,116A,120H,136M,148V
KY579830	MKX506w0	USA	2007	genomic RNA	plasma		1	231	4R,6L,83L,128D,132G,154KR,225S
KY579831	MKX506w52	USA	2008	genomic RNA	plasma		1	231	4R,6L,83L,128D,132G,154K,225S
KY579832	MKX507w0	USA	2007	genomic RNA	plasma		1	231	6L,27I,83L,148V
KY579833	MKX507w52	USA	2008	genomic RNA	plasma		1	231	6L,27I,83L,148V
KY579834	MKX508w0	USA	2007	genomic RNA	plasma		1	231	6M,15M,27I,41V,83T,91V,116A,120S,125Q,135V,154K,178T
KY579835	MKX508w52	USA	2008	genomic RNA	plasma		1	231	6M,15M,27I,41V,83T,91V,116A,120S,125Q,135V,154K,178T
KY579836	MKX509w0	USA	2007	genomic RNA	plasma		1	231	6L,15L,50S,83L,128D,154K,208G
KY579837	MKX509w52	USA	2008	genomic RNA	plasma		1	231	6L,15L,50S,83L,128D,154K,208G

Genbank References: capsid (p24)

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