Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Liu (2013)	Characterization of near full-length genomes of HIV-1 in Yunnan, China: dominance of multiple circulating recombinant forms and unique recombinant forms	Unpublished	2.42e-149	55					Unpublished

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Accession	IsolateName	Country	Coll Date	MolType	Note	FirstAA	LastAA	MutList
KF835493	07CNYN302	China	02-Jul-2007	genomic RNA	subtype: CRF08_BC	1	231	6L,14P,41T,71D,83L,91V,120S,154K,169F,171C,178T,180D,187D,203R,210S,225S
KF835494	07CNYN303	China	26-Jun-2007	genomic RNA	subtype: CRF07_BC	1	231	6L,14P,44A,68I,71D,83L,91V,116A,120S,123A,124V,128D,136M,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
KF835495	07CNYN306	China	20-Jul-2007	genomic RNA	subtype: CRF08_BC	1	231	6L,15L,41T,71D,91V,116N,120A,154K,169F,171V,180D,187D,203R,208G,210S,225S
KF835496	07CNYN307	China	10-Jul-2007	genomic RNA	subtype: CRF08_BC	1	231	14P,15L,41T,71D,83L,87Q,91V,92P,120S,124V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF835497	07CNYN310	China	12-Nov-2007	genomic RNA	subtype: CRF08_BC	1	231	6L,14P,15L,41T,71D,91V,120S,169F,178T,180D,187D,203R,208G,225S
KF835498	07CNYN311	China	12-Nov-2007	genomic RNA	subtype: CRF08_BC	1	231	6L,14P,15L,41T,71D,83L,91V,120S,154K,169F,178T,180D,187D,203R,208G,225S
KF835499	07CNYN312	China	30-Oct-2007	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,204S,207T,208G,225S
KF835500	07CNYN313	China	13-Nov-2007	genomic RNA	subtype: CRF08_BC	1	231	6L,14P,41T,71D,83T,91V,107A,116Q,120S,124V,154K,169F,171A,178T,180D,187D,203R,204G,208G,225S
KF835501	07CNYN314	China	13-Nov-2007	genomic RNA	subtype: CRF08_BC	1	231	6M,14P,41T,71D,83L,91V,120S,123A,154K,169F,171V,180D,187D,200I,204G,207S,208G,225S
KF835502	07CNYN315	China	06-Nov-2007	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,207T,208G,225S
KF835503	07CNYN316	China	06-Nov-2007	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,27I,31G,33N,54M,58I,61D,83L,87Q,88V,91F,92P,120H,128D,146R,148V,154K,178T,200S,207T,208G,225S
KF835504	07CNYN317	China	06-Nov-2007	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,178T,200S,207T,208G,225S
KF835505	07CNYN318	China	23-Jul-2007	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,41T,54M,58I,86A,87Q,91L,92P,120H,128D,135V,148V,149G,154K,178T,200S,207T,208G,225S
KF835506	07CNYN319	China	25-Aug-2007	genomic RNA	subtype: CRF08_BC	1	231	5S,6P,14P,15L,41T,71D,83L,91V,115V,116A,148I,169F,178T,180D,187D,207T,208G
KF835507	07CNYN320	China	25-Aug-2007	genomic RNA	subtype: CRF08_BC	1	231	6L,14P,15L,41T,71D,91P,120S,123A,154K,169F,178T,180D,187D,203R,208G,225S
KF835508	07CNYN321	China	03-Sep-2007	genomic RNA	subtype: CRF08_BC	1	231	6A,14P,41T,71D,83L,91V,148V,154K,163E,169F,178T,180D,187D,203R,208G,225S
KF835509	07CNYN322	China	20-Aug-2007	genomic RNA	subtype: CRF08_BC	1	231	6L,14P,15L,41T,71D,83L,91T,120S,154K,169F,178T,180D,187D,203R,210S
KF835510	07CNYN323	China	25-Aug-2007	genomic RNA	subtype: CRF07_BC	1	231	6L,15L,68I,71D,83L,86I,91V,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
KF835511	07CNYN324	China	04-Sep-2007	genomic RNA	subtype: CRF07_BC	1	231	6L,14P,68I,71D,72V,83L,91V,116A,120G,123A,124V,128D,148S,154K,169F,171C,178T,180D,187D,194S,203R,208G,210S,211I,225S
KF835512	07CNYN325	China	13-Sep-2007	genomic RNA	subtype: CRF08_BC	1	231	6A,14P,41T,71D,83L,116A,128D,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF835513	07CNYN326	China	13-Sep-2007	genomic RNA	subtype: CRF01_AE	1	231	6T,14S,15L,31G,33N,54M,58I,92P,120S,123A,128D,148V,154K,178T,200S,203R,207A,208G,225S
KF835514	07CNYN327	China	27-Sep-2007	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,87Q,92P,120S,128N,132G,146N,148V,178T,200S,207T,208G,225S
KF835515	07CNYN328	China	13-Sep-2007	genomic RNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,92P,120S,124V,128D,149C,154K,169F,178T,187D,203R,208G,210S,225S
KF835516	07CNYN329	China	13-Sep-2007	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,121T,148V,149G,154K,178T,200S,207T,208G,225S
KF835517	07CNYN330	China	13-Sep-2007	genomic RNA	subtype: 01BC	1	231	6L,27I,41T,71D,83L,91P,116A,120S,124V,128D,136M,148V,169F,183H,187D,203R,208G,225S
KF835518	07CNYN332	China	13-Sep-2007	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,79D,83L,87Q,92P,96I,116A,128D,148V,149G,178T,200S,203R,207T,208G,225S
KF835519	07CNYN333	China	13-Sep-2007	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,41A,54M,58I,70E,91A,92P,110N,120S,132K,148V,149G,191I,200S,207T,208G,225S
KF835520	07CNYN334	China	13-Sep-2007	genomic RNA	subtype: 01BC	1	231	6L,14S,27I,41T,71D,83L,91V,116A,118I,120G,124V,128D,169F,178T,180D,187D,203R,208G,225S
KF835521	07CNYN335	China	13-Sep-2007	genomic RNA	subtype: BC	1	231	6L,14P,41T,83L,86A,87Q,91V,96L,98D,116A,120H,124V,180D,203R,225S
KF835522	07CNYN336	China	13-Sep-2007	genomic RNA	subtype: C	1	231	14P,41T,71D,83L,91V,116A,124V,128D,148S,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF835523	07CNYN337	China	13-Sep-2007	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,44A,54M,58I,87Q,92P,120S,123S,148V,178T,200S,207T,208G,210S,225S
KF835524	07CNYN338	China	13-Sep-2007	genomic RNA	subtype: BC	1	231	6L,14P,27I,41T,71D,75D,79D,83L,91V,116A,120G,124V,128D,148S,154K,169F,171C,178T,180D,203R,225S
KF835525	07CNYN339	China	13-Sep-2007	genomic RNA	subtype: BC	1	231	6L,14P,41T,71D,91V,110S,116A,120S,124V,128D,169F,178T,180D,187D,203R,208G,225S
KF835526	07CNYN340	China	13-Sep-2007	genomic RNA	subtype: BC	1	231	6L,14P,41T,83L,87Q,91V,98D,135V,148A,180D,208G,225S
KF835527	07CNYN342	China	13-Sep-2007	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,83T,86A,87Q,91F,92P,96L,128D,148V,149G,154K,178T,200S,207T,208G,225S
KF835528	07CNYN343	China	13-Sep-2007	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,83T,92P,96I,128D,148V,178T,200S,207T,208G,225S
KF835529	07CNYN344	China	13-Sep-2007	genomic RNA	subtype: CRF08_BC	1	231	6L,14P,41T,71D,83L,91V,118I,169F,178T,180D,187D,203R,208G,210S,225S
KF835530	07CNYN346	China	13-Sep-2007	genomic RNA	subtype: CRF08_BC	1	231	6L,14P,15L,41T,71D,83L,110N,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF835532	07CNYN349	China	13-Sep-2007	genomic RNA	subtype: CRF07_BC	1	231	6L,14P,68I,71D,83L,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
KF835531	07CNYN350	China	13-Sep-2007	genomic RNA	subtype: CRF08_BC	1	231	6L,14P,15L,41T,71D,83L,91V,110S,120S,154K,169F,178T,180D,187D,203R,208G,225S
KF835535	07CNYN351	China	13-Sep-2007	genomic RNA	subtype: CRF08_BC	1	231	6L,14P,15L,41T,71D,83L,91V,120S,169F,178T,180D,187D,203R,208G,225S
KF835533	07CNYN354	China	13-Sep-2007	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,14P,15V,31G,33N,54M,58I,71D,83L,92P,110N,120S,128D,148V,149G,154K,200S,207T,208G,225S
KF835534	07CNYN355	China	13-Sep-2007	genomic RNA	subtype: CRF08_BC	1	231	6A,14P,41T,71D,83L,87Q,91V,92P,120S,123A,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF835536	07CNYN357	China	13-Sep-2007	genomic RNA	subtype: CRF01_AE	1	231	6A,15V,31G,33N,54C,58I,83A,92P,107S,120G,123A,128D,148V,178T,200S,203R,225S
KF835537	07CNYN358	China	13-Sep-2007	genomic RNA	subtype: 01BC	1	231	6L,14P,27I,41T,71D,83L,87Q,91V,98D,116A,120S,124V,128D,154K,169F,178T,183H,203R,208G,217S,225S
KF835538	07CNYN359	China	13-Sep-2007	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,71D,83L,92P,128D,148V,149G,200S,207T,208G,225S
KF835539	07CNYN360	China	29-Oct-2007	genomic RNA	subtype: BC	1	231	6L,14P,15L,41T,71D,83L,91V,120S,169F,178T,180D,187D,203R,225S
KF835540	07CNYN361	China	29-Oct-2007	genomic RNA	subtype: BC	1	231	6L,14P,15L,41T,71D,83L,91V,121T,154K,169F,178T,180D,203R,208G,210S,225S
KF835541	07CNYN363	China	29-Oct-2007	genomic RNA	subtype: CRF08_BC	1	231	6L,14P,15L,41T,71D,83L,91V,120S,154K,169F,178T,180D,187D,203R,208G,210S,225S
KF835542	07CNYN364	China	29-Oct-2007	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,110N,116A,128D,148V,178T,200S,207T,208G,225S
KF835543	07CNYN366	China	29-Oct-2007	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,83M,92P,110N,120S,124V,128D,148V,149G,178T,200S,207T,208G,225S
KF835544	07CNYN367	China	29-Oct-2007	genomic RNA	subtype: BC	1	231	6L,14P,41T,71D,83T,91V,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
KF835545	07CNYN369	China	06-Dec-2007	genomic RNA	subtype: CRF08_BC	1	231	6L,14P,15L,41T,71D,91V,120S,169F,178T,180D,187D,203R,208G,210S,225S
KF835546	07CNYN370	China	06-Dec-2007	genomic RNA	subtype: 01B	1	231	6P,14P,15M,31G,33N,54M,58I,92P,96I,128D,146N,148V,178T,200S,207T,208G,225S
KF835547	07CNYN371	China	06-Dec-2007	genomic RNA	subtype: CRF08_BC	1	231	6L,14P,15L,41T,71D,83L,87Q,91V,120S,154K,169F,178T,180D,187D,203R,210S,225S

Genbank References: capsid (p24)

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