Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Novitsky (2013)	Intra-host evolutionary rates in HIV-1C env and gag during primary infection	Infect. Genet. Evol. (2013) In press	1.89e-163	253	32	Mixed	Plasma	SGS	Acute infection

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Accession	IsolateName	Country	Coll Date	MolType	Note	FirstAA	LastAA	MutList
KC630748	G_438_03R	Botswana	07-Sep-2007	genomic RNA	subtype: C	1	231	6L,14N,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630749	G_438_04R	Botswana	07-Sep-2007	genomic RNA	subtype: C	1	231	6L,14N,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630750	G_438_05R	Botswana	07-Sep-2007	genomic RNA	subtype: C	1	231	6L,14N,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630751	G_438_06R	Botswana	07-Sep-2007	genomic RNA	subtype: C	1	231	6L,14N,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630752	G_438_10R	Botswana	07-Sep-2007	genomic RNA	subtype: C	1	231	6L,14N,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630753	G_438_11R	Botswana	07-Sep-2007	genomic RNA	subtype: C	1	231	6L,14N,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630754	G_438_12R	Botswana	07-Sep-2007	genomic RNA	subtype: C	1	231	6L,14N,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630755	G_438_13R	Botswana	07-Sep-2007	genomic RNA	subtype: C	1	231	6L,14N,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630756	G_438_14R	Botswana	07-Sep-2007	genomic RNA	subtype: C	1	231	6L,14N,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630757	G_438_15R	Botswana	07-Sep-2007	genomic RNA	subtype: C	1	231	6L,14N,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630758	G_438_16R	Botswana	07-Sep-2007	genomic RNA	subtype: C	1	231	6L,14N,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630759	G_438_17R	Botswana	07-Sep-2007	genomic RNA	subtype: C	1	231	6L,14N,27I,36I,41T,71D,83L,91V,94S,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,213K,225S
KC630760	G_438_18R	Botswana	07-Sep-2007	genomic RNA	subtype: C	1	231	6L,14N,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630761	G_438_19R	Botswana	07-Sep-2007	genomic RNA	subtype: C	1	231	6L,14N,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630762	G_438_20R	Botswana	07-Sep-2007	genomic RNA	subtype: C	1	231	6L,14N,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630763	OC_0575_01R	Botswana	17-Aug-2006	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630764	OC_0575_02R	Botswana	17-Aug-2006	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,177S,187D,203R,208G,210S
KC630765	OC_0575_03R	Botswana	17-Aug-2006	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,120NS,128D,148V,154K,169F,177S,187D,203R,208G,210S
KC630766	OC_0575_04R	Botswana	17-Aug-2006	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,177S,187D,203R,208G,210S
KC630767	OC_0575_05R	Botswana	17-Aug-2006	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,177S,187D,203R,208G,210S
KC630768	OC_0575_06R	Botswana	17-Aug-2006	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,128D,148V,154K,169F,177S,187D,203R,208G,210S
KC630769	OC_0575_09R	Botswana	17-Aug-2006	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148I,154K,169F,177S,178T,187D,203R,208G,210S
KC630770	OC_0575_10R	Botswana	17-Aug-2006	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,177S,187D,203R,208G,210S
KC630771	OC_0575_11R	Botswana	17-Aug-2006	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,128D,148V,154K,169F,177S,187D,203R,208G,210S
KC630772	OC_0575_12R	Botswana	17-Aug-2006	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,177S,187D,203R,208G,210S
KC630773	OC_0575_13R	Botswana	17-Aug-2006	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,128D,148V,154K,169F,177S,187D,203R,208G,210S
KC630774	OC_0575_14R	Botswana	17-Aug-2006	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,177S,187D,203R,208G,210S
KC630775	OC_0575_15R	Botswana	17-Aug-2006	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,128D,148V,154K,169F,177S,187D,203R,208G,210S
KC630776	OC_0575_16R	Botswana	17-Aug-2006	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630777	OC_0575_17R	Botswana	17-Aug-2006	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,128D,148V,154K,169F,177S,187D,203R,208G,210S
KC630778	OC_0755_01R	Botswana	13-Feb-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,128D,148V,154K,169F,177S,187D,203R,208G,210S,230I
KC630779	OC_0755_02R	Botswana	13-Feb-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630780	OC_0755_03R	Botswana	13-Feb-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,177S,187D,203R,208G,210S
KC630781	OC_0755_04R	Botswana	13-Feb-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630782	OC_0755_05R	Botswana	13-Feb-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630783	OC_0755_06R	Botswana	13-Feb-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630784	OC_0755_07R	Botswana	13-Feb-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,128D,148V,154K,169F,177S,187D,203R,208G,210S
KC630785	OC_0755_09R	Botswana	13-Feb-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,128D,148V,154K,169F,177S,187D,203R,208G,210S
KC630786	OC_0755_10R	Botswana	13-Feb-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,128D,148V,154K,169F,177S,187D,203R,208G,210S
KC630787	OC_0755_11R	Botswana	13-Feb-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,128D,148V,154K,169F,177S,187D,203R,208G,210S
KC630788	OC_0755_12R	Botswana	13-Feb-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,128D,148V,154K,169F,177S,187D,203R,208G,210S
KC630789	OC_0755_13R	Botswana	13-Feb-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630790	OC_0755_14R	Botswana	13-Feb-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,128D,148A,154K,169F,177S,187D,203R,208G,210S
KC630791	OC_0755_15R	Botswana	13-Feb-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,128D,148V,154K,169F,177S,187D,203R,208G,210S
KC630792	OC_0755_16R	Botswana	13-Feb-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,128D,148V,154K,169F,177S,187D,203R,208G,210S
KC630793	OC_1496_01R	Botswana	23-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630794	OC_1496_02R	Botswana	23-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630795	OC_1496_03R	Botswana	23-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630796	OC_1496_04R	Botswana	23-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630797	OC_1496_05R	Botswana	23-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630798	OC_1496_06R	Botswana	23-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630799	OC_1496_07R	Botswana	23-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630800	OC_1496_08R	Botswana	23-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630801	OC_1496_09R	Botswana	23-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630802	OC_1496_10R	Botswana	23-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630803	OC_1496_11R	Botswana	23-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630804	OC_1496_12R	Botswana	23-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630805	OC_1496_13R	Botswana	23-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630806	OC_1496_14R	Botswana	23-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630807	OC_1496_15R	Botswana	23-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630808	OC_1496_16R	Botswana	23-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630809	OC_1496_17R	Botswana	23-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KC630810	OC_1496_18R	Botswana	23-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,200AT,203R,208G,210S
KC630811	OS_0583_01R	Botswana	19-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G,219*
KC630812	OS_0583_02R	Botswana	19-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630813	OS_0583_03R	Botswana	19-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630814	OS_0583_04R	Botswana	19-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630815	OS_0583_05R	Botswana	19-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630816	OS_0583_06R	Botswana	19-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630817	OS_0583_07R	Botswana	19-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,96I,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630818	OS_0583_08R	Botswana	19-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630819	OS_0583_09R	Botswana	19-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630820	OS_0583_10R	Botswana	19-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630821	OS_0583_11R	Botswana	19-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630822	OS_0583_12R	Botswana	19-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630823	OS_0583_13R	Botswana	19-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630824	OS_0583_14R	Botswana	19-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630825	OS_0583_15R	Botswana	19-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630826	OS_0583_16R	Botswana	19-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630827	OS_0583_17R	Botswana	19-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630828	OS_0583_18R	Botswana	19-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630829	OS_0583_19R	Botswana	19-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630830	OS_0583_20R	Botswana	19-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G,222E
KC630831	OS_0767_01R	Botswana	19-Sep-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630832	OS_0767_04R	Botswana	19-Sep-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630833	OS_0767_05R	Botswana	19-Sep-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630834	OS_0767_06R	Botswana	19-Sep-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630835	OS_0767_07R	Botswana	19-Sep-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630836	OS_0767_08R	Botswana	19-Sep-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630837	OS_0767_09R	Botswana	19-Sep-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630838	OS_0767_10R	Botswana	19-Sep-2007	genomic RNA	subtype: C	1	231	6L,15L,30R,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630839	OS_0767_11R	Botswana	19-Sep-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,185T,187D,203R,204G,208G
KC630840	OS_0767_12R	Botswana	19-Sep-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G,225S
KC630841	OS_0767_13R	Botswana	19-Sep-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630842	OS_0767_14R	Botswana	19-Sep-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630843	OS_0767_15R	Botswana	19-Sep-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630844	OS_0767_16R	Botswana	19-Sep-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630845	OS_0767_17R	Botswana	19-Sep-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630846	OS_0767_18R	Botswana	19-Sep-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
KC630847	OS_1039_02R	Botswana	17-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630848	OS_1039_03R	Botswana	17-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630849	OS_1039_04R	Botswana	17-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630850	OS_1039_05R	Botswana	17-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,130H,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630851	OS_1039_06R	Botswana	17-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630852	OS_1039_07R	Botswana	17-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630853	OS_1039_08R	Botswana	17-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630854	OS_1039_09R	Botswana	17-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630855	OS_1039_10R	Botswana	17-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630856	OS_1039_11R	Botswana	17-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630857	OS_1039_12R	Botswana	17-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630858	OS_1039_13R	Botswana	17-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630859	OS_1039_14R	Botswana	17-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630860	OS_1039_15R	Botswana	17-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630861	OS_1039_16R	Botswana	17-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630862	OS_1213_01R	Botswana	08-Dec-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630863	OS_1213_02R	Botswana	08-Dec-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,91V,116T,120S,124V,148V,154K,169F,177C,178T,187D,203R,204G,208G,221A
KC630864	OS_1213_04R	Botswana	08-Dec-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630865	OS_1213_05R	Botswana	08-Dec-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630866	OS_1213_06R	Botswana	08-Dec-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630867	OS_1213_07R	Botswana	08-Dec-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,61R,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630868	OS_1213_08R	Botswana	08-Dec-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630869	OS_1213_09R	Botswana	08-Dec-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630870	OS_1213_10R	Botswana	08-Dec-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630871	OS_1213_11R	Botswana	08-Dec-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630872	OS_1213_13R	Botswana	08-Dec-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630873	OS_1213_14R	Botswana	08-Dec-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630874	OS_1213_15R	Botswana	08-Dec-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630875	OS_1213_16R	Botswana	08-Dec-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630876	OS_1213_17R	Botswana	08-Dec-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630877	OS_1213_18R	Botswana	08-Dec-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,148V,154K,169F,177C,178T,179H,187D,204G,208G
KC630878	OY_051_01R	Botswana	17-Nov-2005	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,41T,71D,75D,83L,86I,91V,110N,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630879	OY_051_02R	Botswana	17-Nov-2005	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,41T,71D,75D,83L,86I,91V,110N,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630880	OY_051_03R	Botswana	17-Nov-2005	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,41T,71D,75D,83L,86I,91V,112R,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630881	OY_051_04R	Botswana	17-Nov-2005	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,41T,71D,75D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630727	OY_080_01	Botswana	16-Dec-2005	genomic DNA	subtype: C	1	231	6L,14S,15L,27I,41T,71D,75D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630728	OY_080_02	Botswana	16-Dec-2005	genomic DNA	subtype: C	1	231	6L,14S,15L,27I,41T,71D,75D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630729	OY_080_03	Botswana	16-Dec-2005	genomic DNA	subtype: C	1	231	6L,14S,15L,27I,41T,71D,75D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630730	OY_080_08	Botswana	16-Dec-2005	genomic DNA	subtype: C	1	231	6L,14S,15L,27I,41T,71D,75D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630731	OY_080_09	Botswana	16-Dec-2005	genomic DNA	subtype: C	1	231	6L,14S,15L,27I,41T,71D,75D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630732	OY_080_10	Botswana	16-Dec-2005	genomic DNA	subtype: C	1	231	6L,14S,15L,27I,41T,71D,75D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630733	OY_080_12	Botswana	16-Dec-2005	genomic DNA	subtype: C	1	231	6L,14S,15L,27I,41T,71D,75D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630734	OY_080_13	Botswana	16-Dec-2005	genomic DNA	subtype: C	1	231	6L,14S,15L,27I,41T,71D,75D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630735	OY_080_16	Botswana	16-Dec-2005	genomic DNA	subtype: C	1	231	6L,14S,15L,27I,41T,71D,75D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630736	OY_080_17	Botswana	16-Dec-2005	genomic DNA	subtype: C	1	231	6L,14S,15L,27I,41T,71D,75D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630737	OY_080_18	Botswana	16-Dec-2005	genomic DNA	subtype: C	1	231	6L,14S,15L,27I,41T,71D,75D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630738	OY_080_19	Botswana	16-Dec-2005	genomic DNA	subtype: C	1	231	6L,14S,15L,27I,35K,41T,51N,71D,75D,83L,86I,91V,116A,120S,128D,132K,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630739	OY_080_20	Botswana	16-Dec-2005	genomic DNA	subtype: C	1	231	6L,14S,15L,27I,41T,71D,75D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630740	OY_080_21	Botswana	16-Dec-2005	genomic DNA	subtype: C	1	231	6L,14S,15L,27I,41T,71D,75D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630741	OY_080_22	Botswana	16-Dec-2005	genomic DNA	subtype: C	1	231	6L,14S,15L,27I,41T,71D,75D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630742	OY_080_23	Botswana	16-Dec-2005	genomic DNA	subtype: C	1	231	6L,14S,15L,27I,41T,71D,75D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC630882	OZL_0527_01R	Botswana	21-May-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,96I,115V,116T,120S,128D,136M,148V,169F,178T,199R,208G,225S
KC630883	OZL_0527_02R	Botswana	21-May-2007	genomic RNA	subtype: C	1	231	6H,27I,41T,71D,83L,115V,116A,120G,128D,136M,148V,169F,178T,199R,208G,225S
KC630884	OZL_0527_03R	Botswana	21-May-2007	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,199R,208G,225S
KC630885	OZL_0527_04R	Botswana	21-May-2007	genomic RNA	subtype: C	1	231	6H,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,199R,208G,225S
KC630886	OZL_0527_05R	Botswana	21-May-2007	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,199R,208G,225S
KC630887	OZL_0527_10R	Botswana	21-May-2007	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,199R,208G,225S
KC630888	OZL_0527_11R	Botswana	21-May-2007	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,199R,208G,225S
KC630889	OZL_0527_12R	Botswana	21-May-2007	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,199R,208G,225S
KC630890	OZL_0527_13R	Botswana	21-May-2007	genomic RNA	subtype: C	1	231	6L,11I,27I,41T,71D,83L,115V,116A,120S,124V,128D,136M,148V,169F,178T,199R,208G,225S
KC630891	OZL_0527_14R	Botswana	21-May-2007	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,199R,208G,225S
KC630892	OZL_0527_15R	Botswana	21-May-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,199R,208G,225S
KC630893	OZL_0527_16R	Botswana	21-May-2007	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,199R,208G,225S
KC630894	OZL_0527_17R	Botswana	21-May-2007	genomic RNA	subtype: C	1	231	6LV,27I,41T,71D,83L,96IM,115V,116A,120S,128D,136M,148V,169F,178T,199R,208G,225S
KC630895	OZL_0527_18R	Botswana	21-May-2007	genomic RNA	subtype: C	1	231	6H,11I,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,199R,208G,225S
KC630896	OZL_0527_19R	Botswana	21-May-2007	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,199R,208G,225S
KC630897	OZL_0527_20R	Botswana	21-May-2007	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,96I,115V,116A,120S,128D,136M,148V,169F,178T,199R,208G,225S
KC630898	OZL_1076_01R	Botswana	20-Nov-2008	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,199R,208G,225S
KC630899	OZL_1076_02R	Botswana	20-Nov-2008	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,199R,208G,225S
KC630900	OZL_1076_03R	Botswana	20-Nov-2008	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120G,128D,136M,148V,169F,178T,199R,208G,225S
KC630901	OZL_1076_04R	Botswana	20-Nov-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,199R,208G,225S
KC630902	OZL_1076_06R	Botswana	20-Nov-2008	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120G,128D,136M,148V,169F,178T,199R,208G,225S
KC630903	OZL_1076_07R	Botswana	20-Nov-2008	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120G,128D,136M,148V,169F,178T,199R,208G,225S
KC630904	OZL_1076_08R	Botswana	20-Nov-2008	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120G,128D,136M,148V,169F,178T,199R,208G,225S
KC630905	OZL_1076_09R	Botswana	20-Nov-2008	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120G,128D,136M,148V,150V,169F,178T,199R,208G,225S
KC630906	OZL_1076_10R	Botswana	20-Nov-2008	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,199R,208G,225S
KC630907	OZL_1076_11R	Botswana	20-Nov-2008	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,199R,208G,225S
KC630908	OZL_1076_12R	Botswana	20-Nov-2008	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120G,128D,136M,148V,169F,178T,199R,208G,225S
KC630909	OZL_1076_13R	Botswana	20-Nov-2008	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120G,128D,136M,148V,169F,178T,199R,208G,225S
KC630910	OZL_1076_15R	Botswana	20-Nov-2008	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120G,128D,136M,148V,169F,178T,199R,208G,225S
KC630911	OZL_1076_16R	Botswana	20-Nov-2008	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,91S,115V,116A,120G,128D,136M,148V,169F,178T,199R,208G,225S
KC630912	OZL_1259_01R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120G,128D,136M,148V,169F,178T,199R,208G,225S
KC630913	OZL_1259_02R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6V,27I,41T,49~,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,187D,199R,208G,225S
KC630914	OZL_1259_03R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6ALPV,11IV,27I,41T,71D,83L,115V,116A,120GS,124IV,128D,136M,148V,169F,178T,187DE,199R,208G,225S
KC630915	OZL_1259_04R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,187D,199R,208G,225S
KC630916	OZL_1259_05R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120G,128D,136M,148V,169F,178T,199R,208G,225S
KC630917	OZL_1259_06R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6LV,11IV,27I,41T,71D,83L,115V,116A,120S,124V,128D,136M,148V,169F,178T,187D,199R,208G,225S
KC630918	OZL_1259_08R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,187D,199R,208G,225S
KC630919	OZL_1259_09R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6L,11I,27I,41T,71D,83L,115V,116A,120S,124V,128D,136M,148V,169F,178T,187D,199R,208G,225S
KC630920	OZL_1259_10R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6L,11I,27I,41T,60E,71D,83L,115V,116A,120S,124V,128D,136M,148V,169F,178T,187D,199R,208G,225S
KC630921	OZL_1259_11R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6L,11I,27I,41T,71D,83L,115V,116A,120S,124V,128D,136M,148V,169F,178T,187D,199R,208G,225S
KC630922	OZL_1259_12R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6L,11I,27I,41T,71D,83L,115V,116A,120S,124V,128D,136M,148V,169F,178T,187D,199R,208G,225S
KC630923	OZL_1259_13R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6L,11I,27I,41T,71D,83L,115V,116A,120S,124V,128D,136M,148V,169F,178T,187D,199R,208G,225S
KC630924	OZL_1259_14R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120G,128D,136M,148V,169F,178T,187D,199R,208G,225S
KC630925	OZL_1259_15R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6H,11I,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,187D,199R,208G,225S
KC630926	OZL_1259_16R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,187D,199R,208G,225S
KC630927	OZL_1259_18R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,187D,199R,208G,225S
KC630928	OZL_1259_19R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120G,128D,136M,148V,169F,178T,187D,199R,208G,225S
KC630929	OZL_1259_20R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,187D,199R,208G,225S
KC630930	OZL_1259_21R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,187D,199R,208G,225S
KC630931	OZL_1259_23R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6H,11I,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,178T,187D,199R,208G,225S
KC630932	OZL_1259_24R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6L,11I,20S,27I,41T,71D,83L,115V,116A,120S,124V,128D,136M,148V,169F,178T,187D,199R,208G,225S
KC630933	OZL_1259_25R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120S,128D,136M,148V,169F,187D,199R,208G,225S
KC630934	OZL_1259_26R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,83L,115V,116A,120G,128D,136M,148V,169F,178T,187D,199R,208G,225S
KC630935	OZL_1259_27R	Botswana	22-May-2009	genomic RNA	subtype: C	1	231	6L,11I,27I,41T,71D,83L,115V,116A,120S,124V,128D,136M,148V,169F,178T,187D,199R,208G,225S
KC630936	QA_067_01R	Botswana	13-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630937	QA_067_02R	Botswana	13-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630938	QA_067_03R	Botswana	13-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630939	QA_067_04R	Botswana	13-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630940	QA_067_05R	Botswana	13-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630941	QA_067_07R	Botswana	13-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630942	QA_067_08R	Botswana	13-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630943	QA_067_09R	Botswana	13-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630944	QA_067_10R	Botswana	13-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630945	QA_067_11R	Botswana	13-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630946	QA_067_12R	Botswana	13-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630947	QA_067_13R	Botswana	13-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630948	QA_067_14R	Botswana	13-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630949	QA_067_15R	Botswana	13-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630950	QA_067_16R	Botswana	13-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630951	QA_067_17R	Botswana	13-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630952	QA_067_18R	Botswana	13-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630953	QA_123_02R	Botswana	08-May-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630954	QA_123_03R	Botswana	08-May-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120G,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630955	QA_123_04R	Botswana	08-May-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630956	QA_123_05R	Botswana	08-May-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630957	QA_123_06R	Botswana	08-May-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630958	QA_123_07R	Botswana	08-May-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630959	QA_123_08R	Botswana	08-May-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630960	QA_123_09R	Botswana	08-May-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630961	QA_123_11R	Botswana	08-May-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630962	QA_123_12R	Botswana	08-May-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630963	QA_123_13R	Botswana	08-May-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630964	QA_123_14R	Botswana	08-May-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630965	QA_123_15R	Botswana	08-May-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630966	QA_123_16R	Botswana	08-May-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630967	QA_123_17R	Botswana	08-May-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630968	QA_123_18R	Botswana	08-May-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630969	QA_123_19R	Botswana	08-May-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,148V,154K,169F,171V,178T,180D,191I,207T,208G
KC630970	QC_331_02R	Botswana	08-Jan-2008	genomic RNA	subtype: C	1	231	6M,15L,27I,41T,50T,71D,83L,86T,91A,92P,93A,116A,120G,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC630971	QC_331_03R	Botswana	08-Jan-2008	genomic RNA	subtype: C	1	231	6M,15L,27I,41T,50T,71D,83L,86T,91A,92P,93A,116A,120G,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC630972	QC_331_04R	Botswana	08-Jan-2008	genomic RNA	subtype: C	1	231	6M,15L,27I,41T,50T,67R,71D,83L,86T,91A,92P,93A,116A,120G,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC630973	QC_331_05R	Botswana	08-Jan-2008	genomic RNA	subtype: C	1	231	6M,15L,27I,41T,50T,71D,83L,86T,91A,92P,93A,116A,120G,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC630974	QC_331_06R	Botswana	08-Jan-2008	genomic RNA	subtype: C	1	231	6M,15L,27I,41T,50T,71D,83L,86T,91A,92P,93A,116A,120G,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC630975	QC_331_07R	Botswana	08-Jan-2008	genomic RNA	subtype: C	1	231	6M,15L,27I,41T,50T,71D,83L,86T,91A,92P,93A,116A,120G,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC630976	QC_331_08R	Botswana	08-Jan-2008	genomic RNA	subtype: C	1	231	6M,15L,27I,41T,50T,71D,83L,86T,91A,92P,93A,116A,120G,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC630977	QC_331_09R	Botswana	08-Jan-2008	genomic RNA	subtype: C	1	231	6M,15L,27I,41T,50T,71D,83L,86T,91A,92P,93A,116A,120G,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC630978	QC_331_10R	Botswana	08-Jan-2008	genomic RNA	subtype: C	1	231	6M,15L,27I,41T,50T,71D,83L,86A,91A,92P,93A,116A,120G,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC630979	QC_331_12R	Botswana	08-Jan-2008	genomic RNA	subtype: C	1	231	6M,15L,27I,41T,50T,71D,83L,86T,91A,92P,93A,116A,120G,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC630743	QG_079_02	Botswana	18-Jun-2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,79D,83M,84R,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,225S
KC630744	QG_079_03	Botswana	18-Jun-2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,79D,83M,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,225S
KC630745	QG_079_05	Botswana	18-Jun-2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,79D,83M,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,225S
KC630746	QG_079_06	Botswana	18-Jun-2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,79D,83M,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,225S
KC630747	QG_324_02	Botswana	18-Jun-2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,79D,83M,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,225S

Genbank References: capsid (p24)

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