Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Ntale (2012)	Temporal Association of HLA-B81:01- and HLA-B39:10-Mediated HIV-1 p24 Sequence Evolution with Disease Progression	J. Virol. 86 (22), 12013-12024 (2012)	3.94e-162	73	62	Naive	Plasma	Direct PCR	HLA

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Accession	IsolateName	Country	Coll Date	MolType	Note	FirstAA	LastAA	MutList
JX434413	CAP061P2V0Wk8	South Africa	20-Dec-2004	genomic RNA	subtype: C	1	231	6A,14P,15L,27I,41T,71D,83L,87Q,91V,96I,110N,116A,120H,148V,154K,169F,178T,180D,187D,203R,208G,225S
JX434414	CAP061P2V3Wk11	South Africa	11-Jan-2005	genomic RNA	subtype: C	1	231	6A,14P,27I,41T,71D,83L,87Q,91V,96I,110N,116A,120H,148V,154K,169F,178T,180D,187D,203R,208G,225S
JX434415	CAP061P2V4Wk14	South Africa	03-Feb-2005	genomic RNA	subtype: C	1	231	6A,14P,15L,27I,41T,71D,83L,87Q,91V,96I,110N,116A,120H,148V,154K,169F,178T,180D,187D,203R,208G,225S
JX434416	CAP061P3V10Wk33	South Africa	14-Jun-2005	genomic RNA	subtype: C	1	231	6A,14P,15L,27I,41T,71D,83L,87Q,91V,96I,110N,116A,120H,148V,154K,169F,178T,180D,187D,203R,208G,225S
JX434417	CAP061P4V22Wk127	South Africa	04-Apr-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83L,87Q,91V,96I,98D,116A,120H,148V,154K,169F,178T,180D,187D,203R,208G,225S
JX434418	CAP129P1V15Wk2	South Africa	13-Jun-2006	genomic RNA	subtype: C	1	231	6L,14P,27I,41T,50T,64G,71D,83L,91H,92P,96L,116T,128D,148V,154K,169F,171V,178T,180D,200I,204G,225S
JX434419	CAP129P2V0Wk4	South Africa	27-Jun-2006	genomic RNA	subtype: C	1	231	6L,14P,27I,41T,50T,64G,71D,83L,91H,92P,96L,116T,128D,148V,154K,169F,171V,178T,180D,200I,204G,225S
JX434420	CAP129P2V5Wk11	South Africa	15-Aug-2006	genomic RNA	subtype: C	1	231	6L,14P,27I,41T,50T,64G,71D,83L,91H,92P,96L,116T,128D,148V,154K,169F,171V,178T,180D,200I,204G,225S
JX434421	CAP129P3V10Wk28	South Africa	07-Dec-2006	genomic RNA	subtype: C	1	231	6L,14P,15M,27I,41T,50T,64G,71D,83L,91H,92P,96L,116T,128D,148V,154K,169F,171V,178T,180D,200I,204G,225S
JX434422	CAP129P3V11Wk32	South Africa	10-Jan-2007	genomic RNA	subtype: C	1	231	6L,14P,15M,27I,41T,50S,64G,71D,83L,91H,92P,96L,116T,128D,148V,154K,169F,171V,178T,180D,200I,204G,225S
JX434423	CAP129P3V12Wk37	South Africa	13-Feb-2007	genomic RNA	subtype: C	1	231	6L,14P,15M,27I,41T,50S,64G,71D,83L,91H,92P,96L,116T,128D,148V,154K,169F,171V,178T,180D,200I,204G,225S
JX434424	CAP129P3V13Wk42	South Africa	15-Mar-2007	genomic RNA	subtype: C	1	231	6L,14P,15M,27I,41T,50S,64G,71D,83L,91H,92P,96L,116T,128D,148V,154K,169F,170R,171V,178T,180D,200I,204G,225S
JX434425	CAP129P3V14Wk46	South Africa	18-Apr-2007	genomic RNA	subtype: C	1	231	6L,14P,15M,27I,41T,50S,64G,71D,83L,91H,92P,96L,116T,128D,148V,154K,169F,170R,171V,178T,180D,200I,204G,225S
JX434426	CAP129P3V15Wk50	South Africa	15-May-2007	genomic RNA	subtype: C	1	231	6L,14P,15M,27I,41T,50S,64G,71D,83L,91H,92P,96L,116T,128D,148V,154K,169F,170R,171V,178T,180D,200I,204G,225S
JX434427	CAP129P3V16Wk54	South Africa	12-Jun-2007	genomic RNA	subtype: C	1	231	6L,14P,15M,27I,41T,50S,64G,71D,83L,91H,92P,96L,116T,128D,148V,154K,169F,170R,171V,178T,180D,200I,204G,225S
JX434428	CAP129P3V9Wk23	South Africa	07-Nov-2006	genomic RNA	subtype: C	1	231	6L,14P,15M,27I,41T,50T,64G,71D,83L,91H,92P,96L,116T,128D,148V,154K,169F,171V,178T,180D,200I,204G,225S
JX434429	CAP129P4V20Wk106	South Africa	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,14P,15M,27I,41T,50S,64G,71D,83L,91H,92P,96L,116T,128D,148V,154K,169F,170R,171V,178T,180D,200I,204G,225S
JX434430	CAP222P2V0Wk6	South Africa	04-May-2006	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,91A,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
JX434431	CAP222P2V5Wk13	South Africa	21-Jun-2006	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,91A,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
JX434432	CAP222P3V15Wk52	South Africa	22-Mar-2007	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,91A,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
JX434433	CAP222P3V16Wk56	South Africa	18-Apr-2007	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,91A,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
JX434434	CAP222P4V17Wk70	South Africa	24-Jul-2007	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,91A,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
JX434435	CAP222P4V18Wk83	South Africa	23-Oct-2007	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,50S,71D,83L,91A,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
JX434436	CAP222P4V19Wk95	South Africa	16-Jan-2008	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,91A,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
JX434437	CAP222P4V20Wk108	South Africa	17-Apr-2008	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,45D,50S,54S,71D,83L,91A,116A,120S,124IV,128D,148V,154K,169F,178T,180D,187D,203R,208G
JX434438	CAP222P4V21Wk122	South Africa	22-Jul-2008	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,45D,50S,54S,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
JX434439	CAP222P4V25Wk174	South Africa	21-Jul-2009	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,45D,50S,54S,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
JX434451	CAP225P2V1Wk4	South Africa	09-Nov-2005	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G
JX434440	CAP225P2V6Wk12	South Africa	03-Jan-2006	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G
JX434441	CAP225P3V10Wk24	South Africa	28-Mar-2006	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,110S,116A,120S,128D,148V,169F,178T,187D,203R,208G
JX434442	CAP225P3V12Wk33	South Africa	31-May-2006	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,110S,116A,120S,128D,148V,169F,178T,187D,203R,208G
JX434443	CAP225P3V16Wk50	South Africa	26-Sep-2006	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,110S,116A,120S,128D,148V,169F,178T,187D,203R,208G
JX434444	CAP225P4V17Wk61	South Africa	12-Dec-2006	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,41T,50H,71D,83L,110S,116A,120S,124V,128D,148V,169F,178T,187D,203R,208G
JX434445	CAP225P4V18Wk74	South Africa	13-Mar-2007	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,41T,50H,71D,83L,116A,120S,124V,128D,148V,169F,178T,187D,203R,208G
JX434446	CAP225P4V19Wk85	South Africa	30-May-2007	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,116A,120S,128D,148V,169F,178T,187D,203R,208G
JX434447	CAP225P4V21Wk117	South Africa	10-Jan-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,41T,50S,71D,83L,116A,120S,128D,148V,169F,178T,187D,201X,202~,203~,204~,205~,206~,207~,208~,209~,210~,211~,212~,213~
JX434448	CAP225P4V22Wk130	South Africa	10-Apr-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,41T,50S,71D,83L,91V,116A,120S,124V,128D,148V,169F,178T,187D,203R,208G
JX434449	CAP225P4V23Wk145	South Africa	22-Jul-2008	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,41T,50S,71D,83L,91V,116A,120S,124V,128D,148V,169F,178T,187D,203R,208G
JX434450	CAP225P4V26Wk183	South Africa	14-Apr-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,50S,71D,83L,91V,116A,120S,124V,128D,148V,169F,178T,187D,203R,208G
JX434452	CAP262P2V0Wk7	South Africa	03-Apr-2006	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JX434453	CAP262P2V1Wk8	South Africa	11-Apr-2006	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JX434454	CAP262P2V6Wk16	South Africa	06-Jun-2006	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JX434455	CAP262P3V9Wk26	South Africa	17-Aug-2006	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JX434456	CAP262P4V20Wk109	South Africa	19-Mar-2008	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JX434457	CAP262P4V22Wk136	South Africa	25-Sep-2008	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JX434458	CAP277P2V0Wk8	South Africa	18-Jul-2007	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,115M,116A,118I,120G,148V,169F,178T,187D,203R,208G,210S
JX434459	CAP277P2V4Wk13	South Africa	28-Aug-2007	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,115M,116A,118I,120G,148V,169F,178T,187D,203R,208G,210S
JX434460	CAP277P2V5Wk16	South Africa	12-Sep-2007	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,115M,116A,118I,120G,148V,169F,178T,187D,203R,208G,210S
JX434461	CAP277P2V7Wk20	South Africa	11-Oct-2007	genomic RNA	subtype: C	1	231	6L,14P,15L,16T,27I,41T,71D,83L,115M,116A,118I,120G,148V,169F,178T,187D,203R,208G,210S
JX434462	CAP277P3V13Wk46	South Africa	09-Apr-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16A,27I,41T,71D,83L,115M,116A,118I,120G,148V,169F,178T,187D,203R,208G,210S,225S
JX434463	CAP277P3V16Wk58	South Africa	03-Jul-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,16A,26G,27I,41T,50T,71D,83L,115M,116A,118I,120G,148V,169F,178T,187D,203R,208G,210S
JX434464	CAP277P3V8Wk24	South Africa	07-Nov-2007	genomic RNA	subtype: C	1	231	6L,14P,15L,16A,27I,41T,71D,83L,115M,116A,118I,120G,148V,169F,178T,187D,203R,208G,210S
JX434465	CAP277P4V17Wk71	South Africa	02-Oct-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,50A,71D,83L,116A,118I,120G,148V,169F,178T,187D,203R,208G,210S
JX434466	CAP277P4V18Wk84	South Africa	06-Jan-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,50S,71D,83L,116A,118I,120G,148V,169F,178T,187D,203R,208G,210S
JX434467	CAP277P4V19Wk97	South Africa	07-Apr-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,50S,54S,71D,83L,116A,120G,148V,169F,178T,187D,203R,208G,210S
JX434468	CAP277P4V20Wk110	South Africa	02-Jul-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,50S,54S,71D,83L,116T,120G,148V,169F,178T,187D,203R,208G,210S,225S
JX434469	CAP277P4V21Wk123	South Africa	06-Oct-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,50S,54S,71D,83L,116T,120G,148V,169F,178T,187D,203R,208G,210S,225S
JX434470	CAP277P4V22Wk137	South Africa	07-Jan-2010	genomic RNA	subtype: C	1	231	6L,27I,41T,50S,54S,71D,83L,116T,120G,148V,169F,178T,187D,203R,208G,210S,225S
JX434471	CAP278P2V1Wk9	South Africa	31-Jul-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,45D,50S,54S,71D,83L,91V,116A,120S,128D,148V,160T,169F,178T,187D,203R,208G,225S
JX434472	CAP278P2V3Wk12	South Africa	16-Aug-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,45D,50S,54S,71D,83L,91V,116A,120S,128D,148V,160T,169F,178T,187D,203R,208G,225S
JX434473	CAP278P3V15Wk54	South Africa	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,45D,50S,54S,71D,83L,91V,116A,120S,128D,148V,160T,169F,178T,187D,191I,203R,208G,225S
JX434474	CAP278P3V8Wk23	South Africa	06-Nov-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,45D,50S,54S,71D,83L,91V,116A,120S,128D,148V,160T,169F,178T,187D,203R,208G,225S
JX434475	CAP278P4V18Wk85	South Africa	13-Jan-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,45D,50S,54S,71D,83L,87Q,91V,116A,120S,128D,148V,160T,169F,178T,187D,191I,203R,208G,225S
JX434476	CAP278P4V19Wk97	South Africa	07-Apr-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,45D,50S,54S,71D,83L,91V,116A,120S,128D,148V,160T,169F,178T,187D,191I,203R,208G,225S
JX434477	CAP282P2V0Wk11	South Africa	25-Oct-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,96I,116A,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
JX434478	CAP282P2V2Wk14	South Africa	15-Nov-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,96I,116A,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
JX434479	CAP282P3V14Wk53	South Africa	14-Aug-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,50T,71D,83L,116A,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
JX434480	CAP282P3V8Wk26	South Africa	07-Feb-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,96I,116A,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
JX434481	CAP289P2V0wK8	South Africa	27-Feb-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,50A,71D,83L,91V,98D,116A,120G,124V,128D,148V,154K,169F,178T,194G,203R,204G,207Q,208G
JX434482	CAP289P2V6Wk18	South Africa	06-May-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,50A,71D,83L,91V,98D,116A,120G,124V,128D,148V,154K,169F,178T,203R,204G,207Q,208G
JX434483	CAP289P3V12Wk41	South Africa	14-Oct-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,50G,71D,83L,91V,116A,120G,124V,128D,148V,154K,169F,178T,203R,204G,207Q,208G
JX434484	CAP289P3V8Wk24	South Africa	19-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,50A,71D,83L,91V,98D,116A,120G,124V,128D,148V,154K,169F,178T,203R,204G,207Q,208G
JX434485	CAP289P3V9Wk28	South Africa	15-Jul-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,50G,71D,83L,91V,116A,120G,124V,128D,148V,154K,169F,178T,203R,204G,207Q,208G

Genbank References: capsid (p24)

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