<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb
#PtsARTSourceCloningStudyType
Rousseau (2016) Large-scale amplification, cloning and sequencing of near full-length HIV-1 subtype C genomes J. Virol. Methods 136 (1-2), 118-125 (2006) 7.44e-151 246 244 Naive Plasma; PBMC Molecular clones Molecular epidemiology

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AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
DQ27564802ZAPS001MB1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorisolated October 2002;subtype: C123114P,27I,41T,54A,71D,83L,91N,96L,116A,124V,128D,148V,154K,169F,171V,178T,180D,187D,203R,210S
DQ35123502ZAPS005MB1South Africa: DurbanOct-2002genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,15L,27I,31G,33N,41T,71D,83L,110S,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
DQ35122002ZAPS006MB1South Africa: DurbanNov-2002genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,83L,116A,124V,128D,148V,169F,171C,180D,187D,203R,208G,225S
DQ27566202ZAPS007MB1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorisolated November 2002;subtype: C12316L,15L,27I,41T,71D,83L,91V,115V,116A,118I,120G,148V,154K,169F,178T,187D,203R,208G,210S
DQ27564702ZAPS008MB1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorisolated November 2002;subtype: C12316L,27I,41T,71D,83L,96L,116A,124V,128D,148V,165A,169F,178T,180D,187D,191I,200I,203R,204G,207Q,208G,210S
DQ35122202ZAPS013MB1South Africa: DurbanNov-2002genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,83L,96V,110S,116A,120G,124V,148V,169F,178T,180D,187G,203R,208G,210S
DQ35121802ZAPS014MB1South Africa: DurbanNov-2002genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,11A,16T,27I,41T,71D,75D,83L,116A,120S,124V,148V,164C,169F,178T,180D,187D,191I,207S,208G
DQ36999502ZAPS015MB1South Africa: DurbanNov-2002genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14P,15L,27I,41T,71D,83L,96L,110N,116A,124V,128D,148V,169F,171V,178T,180D,187D,203R,225S
DQ35122403ZAPS017MB1South Africa: DurbanNov-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14P,27I,41T,71D,83L,109G,116A,124V,128D,148V,154K,169F,175G,178T,180D,200I,203R,204G,208G
DQ27565303ZAPS020MB1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorisolated January 2003;subtype: C12316L,9R,15L,27I,41T,71D,83L,116A,117*,124V,148V,150V,154K,169F,178T,180D,187D,203R,208G,225S
DQ36997803ZAPS021MB1South Africa: DurbanFeb-2006genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,15L,27I,41T,71D,83L,111F,116A,120S,128D,148V,154K,169F,178T,187D,201T,203R,208G
DQ35122503ZAPS023MB1South Africa: DurbanFeb-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14P,15M,27I,41T,56F,71D,83L,116A,117G,120S,128D,129V,148V,154K,169F,178T,180D,208G
DQ39636703ZAPS024MB1South Africa: DurbanFeb-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,27I,37L,41T,71D,83L,110N,116A,120S,128D,148V,169F,178T,180D,187D,203R,208G,210S
DQ35122603ZAPS025MB1South Africa: DurbanFeb-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,62R,71D,83L,91V,116A,118I,120G,128D,130C,148V,161S,169F,178T,187D,203R,208G
DQ36998503ZAPS026MB1South Africa: DurbanFeb-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,15L,27I,41T,55T,71D,79G,83L,116A,120S,148V,154K,169F,178T,180D,187D,203R,208G,225S
DQ35122303ZAPS027MB1South Africa: DurbanFeb-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14P,15L,27I,41T,71D,83L,94V,110N,116A,120S,128D,148V,149G,169F,178T,180D,203R
DQ36999603ZAPS030MB1South Africa: DurbanFeb-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316A,11I,27I,41T,71D,83L,91V,98D,116A,120G,128D,136M,148V,153V,154K,169F,171I,178T,180D,187D,200L,204G,207T,208G,210L
DQ44563303ZAPS032MB1South Africa: DurbanMar-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12314L,6L,27I,41T,58A,71D,83L,87Q,91V,108A,116A,118I,120G,148V,169F,178T,180D,187D,191I,207T,208G
DQ36997903ZAPS034MB1South Africa: DurbanMar-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,38L,41T,71D,75D,83L,91N,92P,116A,120G,128D,148V,169F,178T,180D,187D,203R,208G,214V,227E
DQ36997703ZAPS042MB1South Africa: DurbanApr-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,36I,41T,71D,83L,91N,115V,116A,120S,128D,148V,169F,178T,187D,203R,208G
DQ35122703ZAPS043MB1South Africa: DurbanApr-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,83L,91V,110N,116A,120S,124V,128D,148V,169F,178T,180D,187D,203R,208G
DQ39638403ZAPS044MB1South Africa: DurbanApr-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,14P,27I,41T,71D,83L,91V,96I,116T,128D,148V,159G,169F,178T,180D,187D,200N,203R,208G,225S
DQ39639803ZAPS045MB2South Africa: DurbanMay-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: B12316L,83M,116Q,120S,178T,218R
DQ36998403ZAPS046MB1South Africa: DurbanApr-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14N,15L,27I,41T,71D,83L,116A,120S,148V,169F,178T,203R,204G,208G,216V
DQ39636403ZAPS048MB1South Africa: DurbanApr-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,15L,27I,31N,41T,59I,71D,83M,94D,110S,116A,120G,148V,154K,169F,178T,180D,187D,200I,203R,204G,208G,225S
DQ36998603ZAPS049MB1South Africa: DurbanApr-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,36I,41T,71D,83L,91V,96L,115M,116A,124V,128D,148V,169F,178T,187D,203R,208G
DQ36998003ZAPS050MB1South Africa: DurbanApr-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316A,11T,15L,27I,41T,68I,71D,83L,116A,120G,123G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
DQ39638503ZAPS051MB1South Africa: DurbanMay-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,41T,54S,58A,71D,83I,91V,115V,116A,120S,124V,148V,154K,169F,178T,180D,187D,200I,204G,208G,225S
DQ36998703ZAPS052MB1South Africa: DurbanMay-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,83L,91V,110N,116A,120S,128D,148V,154K,169F,178T,180D,187D,195D,200I,203R,204G,208G,225S
DQ36998803ZAPS054MB2South Africa: DurbanMay-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,15L,27I,41T,71D,83L,91V,95H,110S,116A,120S,124V,128D,148V,169F,178T,180D,203R,210S,225S
DQ39637303ZAPS055MB1South Africa: DurbanMay-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,15L,27I,41T,71D,83L,91V,96L,116A,124V,148V,154K,169F,171V,180D,187D,194V,203R,208G,225S
DQ39637403ZAPS056MB1South Africa: DurbanMay-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,27I,41T,45D,54S,68I,71D,83L,116A,128D,148V,154K,163E,169F,178T,180D,187D,203R,208G,225S
DQ36998903ZAPS057MB2South Africa: DurbanMay-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,15L,27I,41T,71D,83M,91V,116A,120S,123A,124V,148V,154K,169F,178T,180D,187D,200I,203R,204G,208G,225S
DQ44563403ZAPS059MB2South Africa: DurbanMay-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316A,27I,41T,71D,83L,91P,116A,120S,123A,148V,154K,169F,178T,180D,199R,203R,204G,207Q,208G
DQ39638803ZAPS063MB1South Africa: DurbanJun-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,15L,27I,41T,71D,83L,87Q,91H,92P,93A,96L,98D,116A,148V,169F,178T,180D,203R,208G
DQ39637503ZAPS066MB2South Africa: DurbanJun-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C123114P,27I,41T,71D,83L,91V,116A,120G,124V,128D,148V,169F,178T,180D,187D,197G,203R,208G,225S
DQ39638903ZAPS067MB2South Africa: DurbanJun-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,15L,27I,36I,41T,71D,76K,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
DQ39637603ZAPS071MB1South Africa: DurbanJun-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,14P,27I,31G,41T,50G,71D,83L,111P,116A,124V,128D,135V,148V,154K,169F,178T,180D,187D,203R,208G,225S
DQ27564903ZAPS073MB1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorisolated June 2003;subtype: C12316L,27I,41T,45D,52Y,58A,59I,71D,83L,116A,120A,124V,128D,148V,154K,169F,177S,178T,187D,207S,208G
DQ35122803ZAPS074MB2South Africa: DurbanJun-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14P,27I,41T,71D,83L,116A,124V,128D,148V,169F,178T,180D,187D,208G
DQ09359103ZAPS077B1South Africa: DurbanJul-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,75D,83L,116A,120S,128D,148V,169F,178T,187D,203R,208G
DQ09359203ZAPS079B1South Africa: DurbanJul-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,86I,91V,116A,120S,124V,128D,148V,169F,178T,187D,191I,203R,208G,210S,225S
DQ35121903ZAPS081MB1South Africa: DurbanJul-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14P,15L,27I,41T,71D,83L,116A,120S,128D,148V,169F,178T,187D,203R,208G,225S
DQ35122903ZAPS083MB1South Africa: DurbanJul-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14P,15L,27I,31G,33N,41T,71D,83L,87Q,91V,110N,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
DQ35123603ZAPS085MB1South Africa: DurbanJul-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14P,15L,27I,31G,33N,41T,52M,71D,83L,91V,116A,118I,120A,148V,154K,169F,178T,180D,187D,203R,208G,225S
DQ27565403ZAPS086MB1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorisolated July 2003;subtype: C12316L,14S,27I,41T,71D,83L,91V,116T,120S,124V,128D,148V,169F,178T,180D,203R,208G,210S
DQ27565103ZAPS088MB1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorisolated July 2003;subtype: C12316L,27I,41T,71D,83L,96L,116A,124V,128D,148V,169F,178T,180D,187D,203R,208G,225S
DQ35121603ZAPS089MB1South Africa: DurbanJul-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,83L,91V,116A,118I,120G,148V,154K,169F,178T,180D,187D,203R,208G
DQ27564503ZAPS091MB1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorisolated August 2003;subtype: C12316L,13N,14P,15L,27I,29D,31G,33N,41T,71D,83L,87Q,91V,110N,115V,116A,120G,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G
DQ39637703ZAPS094MB1South Africa: DurbanAug-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,14S,27I,41T,71D,116A,124V,128D,148V,154K,169F,171A,178T,180D,187D,204G,207Q,208G
DQ27565203ZAPS095MB1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorisolated August 2003;subtype: C12316L,27I,41T,71D,83L,96L,116A,124V,128D,148V,169F,178T,180D,187D,203R,208G,225S
DQ35123003ZAPS097MB1South Africa: DurbanAug-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,15L,27I,41T,71D,75D,83L,87Q,96I,116T,148V,169F,178T,203R,208G,210S,225S
DQ27565503ZAPS099MB1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorisolated August 2003;subtype: C12316L,27I,41T,71D,87Q,91H,92P,93A,96L,98D,116T,120S,148V,169F,178T,180D,187D,208G,210S
DQ27565603ZAPS103MB2South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorisolated September 2003;subtype: C12312V,6L,27I,41T,50S,71D,91V,116A,120S,124V,128D,148V,154K,168S,169F,171V,178T,180D,187D,210S,225S,230I
DQ36999003ZAPS104MB1South Africa: DurbanSep-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14S,15L,27I,41T,71D,116A,120S,124V,148V,169F,178T,180D,203R
DQ44563203ZAPS105MB2South Africa: DurbanSep-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,15L,31G,33N,71D,120S,148V,154K,169F,178T,180D,194S,203R
DQ39637803ZAPS108MB1South Africa: DurbanSep-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,27I,41T,71D,83L,91V,115V,116A,118I,120G,148V,169F,178T,203R,208G,225S
DQ39637903ZAPS111MB2South Africa: DurbanSep-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,27I,41T,71D,83L,87Q,91V,96L,116A,124V,128D,148V,169F,178T,180D,187D,203R,208G,210S
DQ39638603ZAPS112MB2South Africa: DurbanSep-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,27I,31G,33N,71D,75D,83L,86I,116A,128D,148V,154K,169F,178T,183G,187D,208G
DQ39636503ZAPS113MB2South Africa: DurbanSep-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,15L,41T,71D,83L,116A,148V,154K,169F,177S,178T,187D,200A,203R,207A,208G,225S
DQ44563503ZAPS116MB1South Africa: DurbanOct-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14P,27I,41T,71D,83L,91V,116A,124V,128D,148V,169F,178T,187D,199R,200N,207S,208G
DQ39636803ZAPS118MB1South Africa: DurbanOct-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,14N,27I,41T,71D,83L,91V,116A,120S,124V,128D,148V,169F,178T,180D,187D,203R,208G
DQ35123803ZAPS119MB1South Africa: DurbanOct-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: recombinant A and C12316L,15L,27I,41T,71D,75D,83L,91N,116A,120S,148V,169F,178T,187D,190M,191I,204G,208G,217T,225S
DQ39637003ZAPS122MB1South Africa: DurbanOct-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,14P,15L,27I,41T,71D,83L,91V,110N,116A,120G,128D,131R,148V,169F,178T,187D,203R,208G,225S
DQ39636903ZAPS123MB1South Africa: DurbanOct-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,27I,41T,50S,54S,71D,83L,86A,91V,116A,120G,124V,128D,148V,169F,178T,187D,208G,225S
DQ36997603ZAPS124MB1South Africa: DurbanOct-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,47C,71D,83L,116A,120S,124V,128D,148V,153M,160S,169F,171C,178T,180D,200N,203R,225S
DQ39639003ZAPS125MB1South Africa: DurbanOct-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,27I,41T,71D,83L,91P,116A,120G,124V,128D,148V,154K,169F,171V,178T,180D,210S
DQ27565703ZAPS126MB1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorisolated October 2003;subtype: C12316L,27I,41T,48X,65G,71D,83L,91V,96L,116A,124V,128D,148V,169F,170R,178T,203R,204G,207Q,208G
DQ27564303ZAPS128MB1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorisolated October 2003;subtype: C12316L,10H,15L,27I,41T,71D,83L,91V,116A,120S,124V,148V,154K,169F,178T,180D,187D,203R,208G
DQ27565803ZAPS130MB1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorisolated October 2003;subtype: C12316L,14P,17A,27I,31S,40L,41T,71D,83L,91V,96I,112A,116A,118I,120G,135V,148V,169F,178T,187D,203R,208G,210S
DQ39638003ZAPS131MB1South Africa: DurbanOct-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,14T,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,207S,208G
DQ27564603ZAPS133MB1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorisolated October 2003;subtype: C12316L,27I,41T,71D,83L,98D,116A,120G,124V,128D,148V,169F,178T,187D,203R,208G
DQ35123103ZAPS136MB1South Africa: DurbanNov-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,91V,116A,119A,120S,124V,128D,148V,169F,178T,180D,203R,210S,225S
DQ36998103ZAPS140MB1South Africa: DurbanNov-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,43S,50T,71D,83L,116A,120S,124V,128D,148V,169F,178T,180D,187D,203R,208G
DQ39639103ZAPS143MB1South Africa: DurbanNov-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,15P,29K,41T,50G,59I,71D,83L,91V,116A,120G,124V,128D,148V,169F,178T,180D,187D,203R,208G,215~,225S
DQ39639203ZAPS151MB1South Africa: DurbanDec-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,14S,15L,27I,33N,36I,41T,71D,83L,91V,116A,120S,124V,128D,148V,169F,178T,180D,187D,203R,208G,225S
DQ39639903ZAPS152MB1South Africa: DurbanDec-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,14S,15L,27I,41T,71D,83T,91V,116A,120G,124V,148V,169F,178T,180D,203R,208G,225S
DQ39637103ZAPS155MB1South Africa: DurbanDec-2003genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,14P,16T,27I,41T,71D,83I,87Q,91V,116A,120A,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
AY87805603ZASK006B2South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorsample date 11/2003;subtype: C12316L,27I,31G,33N,41T,59I,71D,83L,91V,107S,115V,116A,118I,120G,123A,148V,154K,166G,169F,171A,178T,180D,187D,204S,207T,208G,225S
DQ16412303ZASK008B2South Africa: DurbanNov-2003genomic DNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,10I,41T,50S,54S,71D,80*,81G,83L,97K,116A,120S,128D,137R,148V,156R,169F,178T,180D,187D,203R,208G,210S,211I,222R
DQ16410403ZASK010B2South Africa: DurbanNov-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,15L,27I,41T,71D,75D,83L,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G,225S,229K
AY90196503ZASK011B2South Africa: DurbanNov-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,75D,83L,110N,116A,120G,124V,148V,169F,180D,187D,203R,208G
DQ27566503ZASK012B2South Africa: Durbangenomic DNAman with heterosexual transmission ashis primary risk factorisolated January 2003;subtype: C12316A,11I,14G,27I,41T,50S,71D,80*,83L,91V,96L,100K,110N,116A,117*,124V,128D,133*,137R,148V,154K,156R,163E,169F,178T,180D,184*,187D,206R,207S,208G,225S
DQ27566003ZASK013B2South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorisolated January 2003;subtype: C12316L,14P,27I,31G,33N,41T,71D,83L,86A,87Q,91V,98D,115V,116A,120S,128D,148V,169F,178T,180D,203R,204G,207Q,208G,225S
DQ35123303ZASK016MB2South Africa: DurbanNov-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14S,27I,41T,71D,83L,91V,120S,128D,148V,154K,169F,171V,178T,180D,182R,186A,187D,203R,204G,207Q,208G,225S
AY87806303ZASK019B2South Africa: Durbangenomic RNAman with heterosexual transmission ashis primary risk factorsample date 12/2003;subtype: C12316L,27I,41T,71D,83L,87Q,91V,115V,116A,118I,120G,123A,131R,148V,154K,169F,178T,180D,187D,199R,203R,208G,225S
AY87806403ZASK020B2South Africa: Durbangenomic RNAman with heterosexual transmission ashis primary risk factorsample date 11/2003;subtype: C12316L,27I,41T,71D,76G,116A,120S,124V,148V,169F,178T,180D,187D,203R,208G,225S
AY77269003ZASK023B2South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorsample date 12/2003;subtype: C12316L,27I,41T,71D,75D,83L,116A,120S,128D,148V,166G,169F,178T,187D,199R,208G,210N,225S
AY77269103ZASK029B2South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorsample date 11/2003;subtype: C12316L,15L,27I,33N,36I,41T,50S,54S,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,182E,186A,187D,203R,208G,210S,225S
AY77269203ZASK033B2South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorsample date 12/2003;subtype: C12316H,27I,41T,71D,91V,116A,120S,148V,154K,169F,178T,180D,187D,203R,208G,209V,210S,227E
AY87806503ZASK034B1South Africa: Durbangenomic RNAman with heterosexual transmission ashis primary risk factorsample date 9/2003;subtype: C12316L,27I,28G,41T,71D,83I,116A,120S,124V,148V,154K,169F,178T,180D,187D,200I,203R,204G,208G,225S
AY90196603ZASK036B1South Africa: DurbanMay-2004genomic RNAman with heterosexual transmission ashis primary risk factorsubtype: C12316L,27I,50T,54I,71D,83I,91V,116A,120G,124V,128D,148V,154K,169F,170R,173K,178T,180D,187D,188I,200A,203R,208G,210S
AY87806603ZASK037B2South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorsample date 11/2003;subtype: C12316L,27I,45D,54S,58A,71D,83L,116A,124V,128D,148V,154K,169F,171V,178T,180D,187D,203R,210S,225S
AY87806803ZASK039B2South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorsample date 12/2003;subtype: C12316V,14P,41T,71D,75D,83L,96L,97G,113D,116A,120H,148V,154K,169F,178T,180D,187D,191T,203R,208G,225S
AY70390803ZASK040B1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorsample date 09/2003;subtype: C12316L,27I,41T,71D,83L,91N,92P,93A,116A,120G,128D,148V,154K,169F,171V,178T,180D,187D,208G
AY77269303ZASK041B1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorsample date 09/2003;subtype: C12316L,27I,41T,71D,83L,86I,116A,120G,124V,128D,148V,169F,178T,180D,187D,203R,208G
AY87806903ZASK042B2South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorsample date 12/2003;subtype: C12316L,27I,41T,71D,83L,86A,87Q,91V,98D,116A,118I,120A,148V,169F,178T,180D,187D,203R,208G,225S,230I
AY77270003ZASK043B1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorsample date 9/2003;subtype: C12316L,14P,27I,41T,71D,83L,91V,111P,116A,119A,120S,128D,148V,154E,169F,177S,187D,200V,204S,207T,208G
DQ16412803ZASK048B2South Africa: DurbanDec-2003genomic DNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,23*,27I,41T,44L,60E,71D,80*,83L,86A,87Q,91V,98D,100I,102N,116A,117*,118I,120A,127E,137R,148V,156R,167Q,169F,178T,180D,184*,187D,200N,203R,206R,208G,220R,225S,230I
AY90196703ZASK058B2South Africa: DurbanSep-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14P,27I,41T,71D,83L,91V,113D,116A,118I,120G,148V,169F,178T,180D,187D,203R,208G
AY90196803ZASK061B1South Africa: DurbanSep-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,83L,116A,124V,128D,148A,169F,178T,187D,191I,199R,207S,208G,225S
DQ16411303ZASK062B1South Africa: DurbanOct-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,83L,116A,120G,124V,128D,148V,153V,164H,169F,171I,178T,180D,203R,225S
AY77269403ZASK065B1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorsample date 10/2003;subtype: C12316L,27I,41T,71D,116A,120S,124V,148V,154K,169F,178T,180D,203R,210S,225S
AY90196903ZASK066B1South Africa: DurbanOct-2003genomic RNAman with heterosexual transmission ashis primary risk factorsubtype: C12316L,27I,41T,48A,71D,87P,110N,116A,120S,124V,148V,169F,178T,180D,203R,208G,225S
DQ27564203ZASK067B1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorisolated October 2003;subtype: C12316L,15L,27I,41T,71D,83L,91V,120S,148V,154K,169F,178T,180D,203R,208G
DQ05640703ZASK071B1South Africa: DurbanOct-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14N,23*,27I,41T,59I,71D,80*,83L,91V,96L,100K,119A,121T,128D,148V,169F,178T,180D,184*,203R,208G,225S
DQ09359303ZASK072B1South Africa: DurbanOct-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,15L,27I,36I,41T,71D,83I,91V,110N,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
AY90197003ZASK073B1South Africa: DurbanOct-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,30R,41T,71D,83I,116A,120S,123L,124V,148V,154K,169F,178T,180D,187D,200I,203R,204G,208G,225S
AY90197503ZASK076B1South Africa: DurbanOct-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14P,15L,27I,41T,71D,83L,86I,91N,92P,93A,96I,116T,120G,148V,169F,178T,187D,203R,208G,225S
AY90197103ZASK078B1South Africa: DurbanOct-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14S,15L,27I,41T,71D,83M,96I,116A,120S,124V,148V,154K,169F,171A,178T,180D,187D,203R,204G,207Q,208G,225S
AY90198103ZASK084B1South Africa: DurbanOct-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,83L,91V,115V,116A,118I,120G,134V,144I,148V,154K,169F,178T,187D,199R,208G,225S
DQ27566303ZASK085B1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorisolated October 2003;subtype: C12316A,15L,27I,41T,68I,71D,76G,83L,110N,116A,124V,148V,154K,169F,177G,180D,187D,191I,203R,208G,210S,225S
DQ16412403ZASK086B1South Africa: DurbanOct-2003genomic DNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,23*,27I,41T,60R,71D,80*,82K,83L,89R,97K,116A,124V,128D,137R,148V,156R,162K,169F,178T,180D,184*,187D,203R,208E
AY87807003ZASK094B1South Africa: Durbangenomic RNAman with heterosexual transmission ashis primary risk factorsample date 10/2003;subtype: C12316L,15L,27I,41T,71D,83L,87Q,91V,116T,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
AY87806003ZASK097B1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorsample date 10/2003;subtype: C12316L,15L,54S,58A,71D,83L,120S,124M,135T,148V,153T,169F,178T,180D,187D,191A,207Q,208G,225S
AY87806103ZASK098B1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorsample date 11/2003;subtype: C12316L,27I,41T,71D,75D,83L,116A,120S,128D,148V,154K,169F,178T,180D,187D,195S,203R,208G,210S
DQ16410603ZASK103B1South Africa: DurbanNov-2003genomic DNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14P,15L,27I,75D,77M,79D,83T,86I,96I,116A,120G,124V,148V,154K,169F,171V,178T,180D,187D,200I,204G,207Q,208G,221M,225S
DQ39639503ZASK104B1South Africa: DurbanNov-2003genomic RNAmale with heterosexual transmission asprimary risk factorsubtype: C12316L,27I,41T,71D,83L,91V,110S,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
DQ05641003ZASK107B1South Africa: DurbanNov-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,10I,14S,15L,27I,33N,36I,41T,71D,83L,91V,116A,120S,124V,128D,148V,169F,178T,180D,203R,208G,210S,225S
DQ05640403ZASK111B1South Africa: DurbanNov-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,31G,33N,41T,71D,83L,91V,96L,116Q,120N_T,122Q,128D,148V,154K,169F,178T,180D,187D,203R,208G,215T
DQ35123703ZASK113B1South Africa: DurbanNov-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,83L,91V,104V,116A,120S,128D,148V,154K,165A,169F,177S,178T,203R,207S,208G
AY77269603ZASK116B1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorsample date 11/2003;subtype: C12316L,27I,41T,71D,83L,91A,116A,120S,122L,128D,148V,169F,178T,180D,187D,191I,207S,208G,210S
DQ05640803ZASK117B1South Africa: DurbanNov-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,15L,27I,41T,71D,91P,116A,120S,124V,148V,154K,169F,178T,180D,187D,200I,203R,204G,208G
DQ09360103ZASK211B1South Africa: DurbanDec-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,50S,71D,83L,91V,116A,118I,120A,148V,154K,169F,178T,180D,184R,187D,203R,208G,210S,225S
DQ97898103ZASK212BSouth Africa: DurbanJan-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14S,27I,41T,71D,83L,91V,110S,116A,120S,124V,128D,148V,169F,178T,180D,187D,203R,204G,207Q,208G,225S
DQ09359603ZASK212B1South Africa: DurbanJan-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14S,27I,41T,71D,83L,91V,110S,116A,120S,124V,128D,148V,169F,178T,180D,187D,203R,204G,207Q,208G,216A,225S
DQ09360703ZASK213B1South Africa: DurbanAug-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316A,14P,27I,41T,71D,76G,83I,91V,112A,116A,120G,128D,148V,154K,169F,178T,180D,191I,203R,207A,208G
DQ27566103ZASK215M6WSouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorisolated August 2003;subtype: C12316L,11I,14P,15L,27I,31N,41T,59I,71D,83L,87Q,91V,96I,98D,110N,116T,120G,128D,148V,154K,169F,171V,178T,180D,187D,203R,210S
DQ09359703ZASK223B1South Africa: DurbanJan-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14P,27I,41T,71D,83L,116A,120G,124V,128D,148V,169F,171V,178T,180D,203R,225S
DQ27566403ZASK224MB1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorisolated March 2003;subtype: C12316L,14P,27I,41T,71D,83L,98D,116A,124V,128D,148V,169F,178T,180D,208G,210S
DQ16410803ZASK226B1South Africa: DurbanMar-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C123127I,41T,50R,71D,83L,87Q,91V,98D,116A,120S,124V,148V,154K,169F,171V,178T,180D,187D,203R,208G,225S
DQ09358903ZASK232B1South Africa: DurbanSep-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14P,15L,27I,41T,71D,79D,87Q,91V,96I,116T,148V,154K,169F,178T,180D,187D,203R,207S,208G,225S
DQ35123403ZASK233B1South Africa: DurbanDec-2003genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14P,27I,31G,41T,71D,83L,91V,110N,128D,148V,154K,169F,178T,180D,203R,208G
DQ27564404ZAPS016MB1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorisolated November 2002;subtype: C12316L,27I,41T,71D,83L,96L,116A,124A,128D,148V,154K,169F,171V,178T,180D,187D,203R,208G,214T,225S
DQ35123204ZAPS157MB1South Africa: DurbanJan-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,36I,41T,71D,83L,86A,87Q,91V,96L,116A,120H,124V,128D,148V,154K,169F,178T,179*,180D,187D,203R,208G,210S,225S
DQ16410704ZAPS160B1South Africa: DurbanJan-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C123127I,36I,41T,71D,83L,91V,96L,116A,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
DQ16411504ZAPS161B1South Africa: DurbanJan-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,15L,27I,41T,71D,91V,116A,120S,124A,148V,169F,178T,180D,203R,208G
DQ35122104ZAPS165MB1South Africa: DurbanJan-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14P,15L,31G,33N,41T,71D,83L,92Q,110N,116N,120G,135V,148V,154K,169F,178T,180D,187D,203R
DQ16412104ZAPS168B1South Africa: DurbanJan-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,83L,86A,87Q,94N,96I,116T,120S,128D,148V,169F,178T,180D,187D,203R,208G,210S
DQ39639304ZAPS169MB1South Africa: DurbanJan-2004genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316H,14P,15L,27I,41T,71D,83M,110N,116A,120S,148V,154K,169F,178T,180D,187D,203R,208G
DQ16411604ZAPS170B1South Africa: DurbanJan-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,83L,116A,124V,128D,148V,169F,178T,180D,187D,203R,208G
DQ27565904ZAPS172MB1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorisolated February 2004;subtype: C12316L,15L,27I,41T,71D,83L,116A,120S,124V,148V,169F,178T,180G,203R
DQ39639404ZAPS177MB1South Africa: DurbanFeb-2004genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,27I,41T,71D,75D,83L,87P,91V,98D,116A,120S,124V,148V,169F,178T,180D,187D,210S
DQ44563604ZAPS178MB1South Africa: DurbanFeb-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,36I,41T,50S,71D,83L,116A,124V,128D,143K,148V,169F,178T,180D,187D,203R,208G,225S
DQ16412504ZAPS187B1South Africa: DurbanMar-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,10I,15L,23*,27I,41T,60R,71D,80*,83L,89R,100K,101R,116A,117*,124V,128D,132K,133*,137R,148V,154K,156R,169F,171V,178T,180D,184*,187D,206R,210S,222R,223R
DQ16412204ZAPS188B1South Africa: DurbanMar-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,15L,27I,41T,71D,83L,116A,124V,128D,148V,154K,169F,171V,178T,180D,187D,203R,210S
DQ16411704ZAPS189B1South Africa: DurbanMar-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,11A,14P,15L,27I,31G,33N,41T,83L,110N,115V,116A,120S,128G,148V,154K,169F,171I,178T,203R,225S
DQ09360204ZAPS190B1South Africa: DurbanMar-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,31G,33N,41T,71D,83I,87Q,91V,96I,98D,115V,116T,120S,128D,148V,154K,169F,178T,180D,187D,203R,210S,225S
DQ16410904ZAPS193B1South Africa: DurbanMar-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,75D,83L,91V,110N,116A,120G,124V,142A,148V,169F,178T,180D,187D,207T,208G,225S
DQ16411804ZAPS195B1South Africa: DurbanMar-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14T,15L,27I,41T,50A,71D,83L,91V,116A,120S,124V,128D,148V,154K,169F,178T,180D,203R,210S,225S
DQ36999704ZAPS197MB1South Africa: DurbanMar-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C123115L,27I,31N,41T,71D,83L,115V,116A,120A,128D,148V,169F,178T,180D,187D,200N,203R,208G,210S,225S
DQ44563704ZAPS198MB1South Africa: DurbanMar-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,15L,27I,41T,71D,83L,116A,120S,128D,136M,148V,169F,178T,203R,208G,225S
DQ16411004ZAPS199B1South Africa: DurbanApr-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14P,15L,27I,31G,33N,41T,71D,83L,91V,96L,110N,112G,116A,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
DQ16411104ZAPS201B1South Africa: DurbanMar-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14S,15L,19A,27I,41T,50A,71D,83L,86A,91V,116T,120S,124V,128D,148V,169F,178T,187D,191I,203R,204G,208G,209P,225S
DQ09359804ZAPS202B1South Africa: DurbanMar-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316H,27I,41T,71D,96I,110N,116T,120G,148V,154E,169F,178T,180D,187D,191I,203R,204G,207Q,208G,225S
DQ09360604ZAPS204B1South Africa: DurbanMar-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: recombinant A and C12316L,27I,41T,71D,75D,83L,89R,91V,116A,118I,120G,124V,148V,154K,169F,178T,180D,187D,203R,208G,211I,225S
DQ09359904ZAPS205B1South Africa: DurbanMar-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,7P,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,180D,187D,203R,208G
DQ16412604ZAPS206B1South Africa: DurbanMar-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316A,14V,27I,41T,50H,71D,83T,87P,91V,96I,116T,124T,148V,154K,169F,178T,180D,187D,203R,208G,225S
DQ09360304ZAPS208B1South Africa: DurbanApr-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,83T,87Q,91V,96I,98D,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
DQ16411204ZAPS211B1South Africa: DurbanApr-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,54C,71D,83L,87Q,91V,116A,120S,124V,128D,148V,169F,178T,187D,203R,208G,225S
DQ09358804ZAPS214B1South Africa: DurbanApr-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,98G,116A,120S,124V,148V,154K,169F,178T,180D,187D,200V,203R,204G,208G,225S
DQ09360004ZAPS216B1South Africa: DurbanApr-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,15T,27I,41T,71D,87Q,96I,98D,116T,120G,128D,148V,169F,178T,180D,187D,203R,208G
DQ16411904ZAPS217B1South Africa: DurbanApr-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,91A,96I,116T,120S,124V,148V,169F,178T,180D,203R,208G,225S
DQ16412004ZAPS284B1South Africa: DurbanJul-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14P,27I,41T,71D,83L,91N,96I,110N,116T,120G,128D,148V,154K,169F,178T,180D,203R,208G
AY90197404ZASK031B2South Africa: DurbanJan-2004genomic RNAman with heterosexual transmission ashis primary risk factorsubtype: C12316L,27I,36I,41T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,204G,207Q,208G,225S
AY87806704ZASK038B1South Africa: Durbangenomic RNAman with heterosexual transmission ashis primary risk factorsample date 9/2003;subtype: C12316L,14P,17A,41T,71D,83L,115M,116A,118I,120G,126A,128D,148V,169F,178T,187D,203R,208G,225S
DQ39636604ZASK052MB2South Africa: DurbanJan-2004genomic RNAmale with heterosexual transmission asprimary risk factorsubtype: C12316L,27I,41T,50G,71D,83L,91V,116A,120G,128D,135V,148V,154K,169F,171A,177S,178T,187D,203R,204G,207T,208G
DQ09358604ZASK128B1South Africa: DurbanJan-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,50T,71D,83L,120S,128D,148V,154K,169F,171V,178T,180D,187D,203R,210S,225S
AY77269704ZASK130B1South Africa: Durbangenomic RNAman with heterosexual transmission ashis primary risk factorsample date 01/2004;subtype: C12316L,15P,27I,41T,71D,86A,87Q,91V,96I,116T,120S,148V,154K,169F,178T,187D,191I,203R,208G,210S,225S
DQ05641204ZASK131B1South Africa: DurbanJan-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,15L,27I,41T,48A,71D,83L,112A,116A,120S,124V,128D,148V,154K,169F,171V,178T,180D,203R,225S
DQ09359404ZASK132B1South Africa: DurbanJan-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C123127I,50T,55T,71D,83L,96L,116A,124V,128D,148V,154K,169F,171C,178T,180D,187D,203R,207S,208G,225S,228V
AY77269804ZASK133B1South Africa: Durbangenomic RNAman with heterosexual transmission ashis primary risk factorsample date 01/2004;subtype: C12316L,15L,41T,50S,71D,83L,116T,120G,124V,128D,148V,169F,178T,180D,187D,203R,208G
AY70390904ZASK134B1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorsample date 01/2004;subtype: C12316L,27I,31G,41T,71D,79D,83L,91A,120S,148V,150V,154K,169F,178T,180D,203R,207Q,208G,225S
DQ16410504ZASK137B1South Africa: DurbanMar-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,15L,27I,41T,71D,91P,116A,120S,124V,148V,153T,154K,155R,169F,178T,180D,187D,200I,203R,204G,208G
AY87807204ZASK139B1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorsample date 2/2004;subtype: C12316L,36I,41T,71D,75G,83L,91V,116A,120S,128D,148V,169F,171V,178T,180D,194S,201T,203R,225S
AY90197304ZASK140B1South Africa: DurbanFeb-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,83L,91V,115V,116A,118I,120G,148V,154K,169F,178T,180D,187D,200I,204G,207S,208G
AY70391004ZASK143B1South Africa: Durbangenomic RNAman with heterosexual transmission ashis primary risk factorsample date 02/2004;subtype: C12316L,15L,27I,41T,71D,83L,86I,91V,116A,120S,128D,146C,148V,169F,171V,178T,180D,187D,207T,208G
AY70391104ZASK144B1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorsample date 02/2004;subtype: C12311S,6L,27I,33N,36I,41T,71D,83L,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
AY90197604ZASK145B1South Africa: DurbanFeb-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,10L,14P,15L,16T,41T,54S,71D,83L,116N,120S,128D,148V,154K,169F,178T,187D,200I,204G,208G
AY77269904ZASK146B1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorsample date 02/2004;subtype: C12316L,14P,15L,27I,31G,33N,41T,71D,83L,91V,110N,115V,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G,216A
DQ16411404ZASK147B1South Africa: DurbanMar-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,83L,87Q,96I,116Q,120S,148V,169F,178T,183G,187D,203R,208G,210S,225S
DQ09359004ZASK148B1South Africa: DurbanMar-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,10T,17L,27I,41T,71D,83M,116A,120S,124V,148V,154K,169F,170R,178T,180D,187D,200I,203R,204G,207A,208G,214V
AY90197704ZASK151B1South Africa: DurbanMar-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,83L,91N,116A,120S,128D,148V,169F,178T,180D,187D,203R,208G
DQ44563104ZASK152MB1South Africa: DurbanMar-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,83M,91V,116A,120S,124V,148V,154K,169F,178T,187D,200V,203R,204G,208G
AY87807104ZASK154B1South Africa: Durbangenomic RNAman with heterosexual transmission ashis primary risk factorsample date 3/2004;subtype: C12316L,27I,41T,71D,83L,86A,92Q,96I,98D,116Q,128D,148V,154K,169F,178T,180D,187D,203R,208G
AY90197804ZASK155B1South Africa: DurbanMar-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,71D,75D,83L,91V,116A,119A,120G,123A,128D,148V,169F,170R,171A,178T,180D,187D,207S,208G
DQ39640004ZASK162B1South Africa: DurbanMar-2004genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: A12316A,7H,14P,15L,27I,31G,33N,54M,58I,71D,78M,92P,110N,120S,128D,148V,169F,171A,175G,178T,187G,200Q,207T,208G,210S,214V,225S
AY90197904ZASK163B1South Africa: DurbanMar-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,83I,116A,120S,124V,148V,154K,169F,178T,180D,187D,191A,200I,203R,204G,208G
DQ05640504ZASK164B1South Africa: DurbanMar-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,31G,33N,41T,71D,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
DQ39638704ZASK165B1South Africa: DurbanMar-2004genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,27I,31G,33N,41T,71D,83L,87P,91V,98D,116A,124V,128D,148V,154K,169F,178T,180D,187D,191I,203R,208G,225S
DQ16412704ZASK167B1South Africa: DurbanMar-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,83T,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G,225S
AY87805804ZASK168B1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorsample date 3/2004;subtype: C12316L,27I,41T,71D,75D,83L,91V,102T,116A,120S,148V,154K,169F,178T,183V,203R,204G,207V,208G,225S
DQ39638104ZASK169B1South Africa: DurbanMar-2004genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,27I,36I,41T,62R,71D,79D,83L,91V,96L,116A,124V,128D,148V,154K,169F,178T,180D,187D,191I,200I,203R,204G,207Q,208G,210S,225S
DQ09359504ZASK170B1South Africa: DurbanApr-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,15L,27I,41T,71D,91V,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
DQ35121704ZASK171B1South Africa: DurbanApr-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,15L,27I,41T,50A,71D,83M,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
DQ36999804ZASK172B1South Africa: DurbanApr-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,29G,38L,41T,71D,75D,83L,86I,91V,116A,120S,124V,128D,148V,154K,169F,171V,178T,180D,203R,225S
DQ09360404ZASK173B1South Africa: DurbanApr-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,83L,87Q,96I,116T,120S,128D,136M,148V,169F,178T,180D,187D,199R,210S
AY90198004ZASK174B1South Africa: DurbanApr-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C123114P,27I,41T,71D,83I,109G,116A,119A,120S,124V,128D,129V,148V,154K,169F,171V,178T,180D,187D,203R,210S,225S
DQ16412904ZASK175B1South Africa: DurbanApr-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14P,15L,27I,41T,56F,71D,83L,87Q,92P,96I,111P,116A,120S,124V,128D,148V,154K,169F,178T,180D,207T,208G,225S
DQ05641604ZASK176B1South Africa: DurbanApr-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27M,41T,71D,75G,83L,91V,116A,124A,128D,148V,154K,169F,171V,180D,187D,208G,210S
DQ09358704ZASK178B1South Africa: DurbanApr-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,41T,71D,83L,112A,116A,120S,124V,128D,148V,169F,178T,182Q,187D,203R,208G
AY87805904ZASK180B1South Africa: Durbangenomic RNAman with heterosexual transmission ashis primary risk factorsample date 4/2004;subtype: C12316L,14P,15L,27I,41T,71D,83L,110N,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
AY87806204ZASK181B1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorsample date 4/2004;subtype: C12316L,14S,15L,31G,33N,41T,71D,83I,91V,116A,120S,128D,148V,154K,169F,178T,180D,203R,204G,207Q,208G
AY87805404ZASK182B1South Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factorsample date 5/2004;subtype: C12316L,11I,27I,36I,41T,50H,71D,83L,91V,96L,98G,116A,124V,125Q,128D,148V,169F,170R,178T,187D,203R,208G,225S
DQ05641804ZASK184B1South Africa: DurbanMay-2004genomic RNAman with heterosexual transmission ashis primary risk factorsubtype: C12316H,10Q,27I,28G,41T,50H,71D,83T,91V,96L,110N,116A,120A,124V,148V,154K,169F,171V,178T,180D,187D,203R,210S
DQ05640904ZASK190B1South Africa: DurbanMay-2004genomic RNAman with heterosexual transmission ashis primary risk factorsubtype: C12316L,27I,41T,66V,71D,116T,120S,124V,148V,169F,178T,180D,187D,208G
DQ36999304ZASK191B1South Africa: DurbanMay-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14T,15M,27I,31G,33N,45D,54A,58I,71D,83L,91V,116A,120S,128D,148V,169F,178T,187D,199R,200N,203R,205S,208G,210S,214V
DQ39639604ZASK193B1South Africa: DurbanMay-2004genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,27I,31G,33N,41T,71D,83L,115V,116A,120S,128D,148V,154K,169F,178T,180D,203R,208G
DQ05641304ZASK196B1South Africa: DurbanJun-2004genomic RNAman with heterosexual transmission ashis primary risk factorsubtype: C12316L,14S,15L,31G,33N,41T,71D,83L,91V,111P,128D,148V,154K,169F,178T,180D,187D,203R,204G,207Q,208G
DQ39638304ZASK200B1South Africa: DurbanJul-2004genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,27I,41T,50S,70E,71D,83L,91M,116A,120S,128D,148V,169F,178T,187D,203R,204G,208G
DQ39639704ZASK201B1South Africa: DurbanJul-2004genomic RNAmale with heterosexual transmission asprimary risk factorsubtype: C12316L,27I,37V,41T,71D,91A,104M,116A,120S,124V,148V,154K,169F,171V,178T,187D,200N,203R,208G,225S
DQ05641404ZASK204B1South Africa: DurbanJul-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,36I,41T,75D,83L,116A,120S,128D,139D,148V,169F,178T,187D,203R,208G
DQ05641504ZASK206B1South Africa: DurbanJul-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,15L,27I,41T,50T,71D,83L,86A,87Q,91Y,92P,93A,96I,116T,120G,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
DQ05640604ZASK208B1South Africa: DurbanAug-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14P,17A,41T,71D,83L,91N,96I,116T,128D,148V,169F,178T,180D,187D,203R,208G,225S
DQ05641704ZASK217B1South Africa: DurbanSep-2004genomic RNAsubtype: C12316L,14S,15L,27I,41T,71D,83T,87Q,92P,94N,96I,98D,116T,120S,124V,148V,169F,171V,178T,180D,203R
DQ09360504ZASK234B1South Africa: DurbanFeb-2004genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,27I,36I,41T,71D,91V,96L,116A,124V,128D,148V,154K,169F,178T,187D,203R,204G,208G,225S
DQ36999105ZASK240B1South Africa: DurbanMar-2005genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14P,27I,36I,41T,71D,83L,116A,124V,128D,148V,169F,178A,180D,187D,203R,208G
DQ39637205ZASK243B1South Africa: DurbanMar-2005genomic RNAfemale with heterosexual transmissionas primary risk factorsubtype: C12316L,14P,27I,41T,71D,83L,91H,92P,93A,96I,98D,116A,120S,128D,148V,169F,178T,180D,203R,225S
DQ36999205ZASK244B1South Africa: DurbanMar-2005genomic RNAwoman with heterosexual transmission asher primary risk factorsubtype: C12316L,14P,15L,27I,41T,71D,83L,102C,116A,120S,128D,148V,169F,171V,178T,180D,187D,203R
DQ36998205ZASK245B1South Africa: DurbanMar-2005genomic RNAman with heterosexual transmission ashis primary risk factorsubtype: C123113S,14P,15L,27I,41T,71D,83I,91V,96L,116A,120A,124V,148V,154K,169F,178T,180D,187D,203R,204G,207S,208G
DQ36998305ZASK246B1South Africa: DurbanApr-2005genomic RNAman with heterosexual transmission ashis primary risk factorsubtype: C12312V,6L,10W,16T,50S,54S,71D,83T,116A,120S,128D,169F,178T,187D,207S,208G,210S,211I
DQ36999405ZASK247B1South Africa: DurbanApr-2005genomic RNAman with heterosexual transmission ashis primary risk factorsubtype: C12316H,27I,41T,71D,83I,115V,116A,120A,148V,154K,169F,178T,180D,203R,208G,225S
AY585268C.ZA.1069MBSouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 02/2000subtype: C12316L,27I,41T,71D,83L,91V,116A,120G,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G
AY463229C.ZA.1119MBSouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 12/1999subtype: C123114S,15L,27I,41T,50T,71D,83I,116A,120S,124V,128D,148V,154K,169F,178T,180D,203R,210S
AY463217C.ZA.1134MBSouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 06/2000subtype: C12316L,27I,36I,41T,71D,83L,91N,92P,116T,120S,128D,148V,169F,178T,203R,204G,207Q,208G,210S
AY585266C.ZA.1157M3MSouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 09/2000subtype: C12316L,15L,27I,41T,71D,75D,83L,116A,120S,148V,154K,169F,171V,178T,180D,187D,208G,216S,225S
AY463230C.ZA.1165MBSouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 06/2000subtype: C12316L,27I,41T,71D,83T,116A,120G,124V,148V,169F,178T,180D,187D,203R,208G
AY463231C.ZA.1168MBSouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 10/2000subtype: C12316L,27I,41T,71D,83L,116A,120G,124V,128D,148V,169F,178T,180D,187D,203R,208G,210S
AY463225C.ZA.1170MBSouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 10/2000subtype: C123127I,41T,71D,83L,96L,110S,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,228X
AY463232C.ZA.1171MBSouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 06/2000subtype: C12316L,27I,41T,45D,54S,71D,83L,91V,96L,116A,128D,148V,154K,169F,177S,178T,187D,203R,208G
AY463218C.ZA.1176MBSouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 08/2000subtype: C12316L,27I,41T,71D,83L,86I,91V,116A,120G,124V,128D,148V,169F,178T,187D,199R,208G,210N
AY463233C.ZA.1178MBSouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 07/2000subtype: C12316L,41T,71D,83M,91V,112A,116A,120S,124V,128D,148V,154K,169F,177S,178T,180A,200S,203R,223E,225S
AY585267C.ZA.1184MBSouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 08/2000subtype: C12316L,27I,41T,71D,83M,91V,96I,116A,120S,124V,148V,169F,178T,187D,203R,208G
AY585264C.ZA.1189MBSouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 08/200012316L,14P,27I,41T,71D,79*,116A,120S,128D,148V,169F,178T,180D,187D,203R,208G
AY463219C.ZA.1192M3MSouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 08/2000subtype: C12316L,41T,54M,71D,91V,96I,116T,128D,148V,169F,178T,200A,225S
AY463234C.ZA.1197MBSouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 08/2000subtype: C12316L,27I,33G,41T,71D,87Q,91H,92P,93A,115V,116A,120A,148V,169F,178T,180D,187D,203R,208G,225S
AY463221C.ZA.1210MBSouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 10/2000subtype: C12316L,36I,41T,71D,83L,91A,116A,120S,128D,148V,169F,178T,180D,187D,203R,208G
AY463236C.ZA.1214MBSouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 10/2000subtype: C12316L,27I,41T,49S,71D,83L,102G,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,210S,225S
AY463226C.ZA.1217MBSouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 10/2000subtype: C12316L,27I,35K,41T,71D,83L,115V,116A,118I,120G,148V,169F,178T,180D,187D,203R,208G
AY463227C.ZA.1225MBSouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 12/2000subtype: C12316L,14P,27I,31G,33N,41T,71D,74S,83L,87Q,91V,96I,115V,116A,120S,128D,148V,169F,178T,180D,187D,203R,208G
AY463222C.ZA.1228MBSouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 12/2000subtype: C12316L,14P,27I,31G,41T,71D,83L,110N,116T,120S,128D,148V,169F,178T,180D,187D,203R,207S,208G
AY463235C.ZA.2004MBSouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 01/2001subtype: C12316L,27I,41T,71D,83L,87Q,91N,92P,93A,116A,120S,128D,148V,169F,178T,180D,187D,203R,207S,208G,225S
AY463237C.ZA.2134MBSouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 02/2001subtype: C12316L,27I,41T,71D,83L,116S,118I,120G,148V,169F,178T,180D,187D,203R,208G
AY585265C.ZA.J112MASouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 09/2000subtype: C12316L,27I,41T,71D,83L,107S,116A,120S,124V,128D,148V,169F,171V,178T,200A,203R,225S
AY463228C.ZA.J38MASouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 11/2000subtype: C12316P,27I,41T,50S,71D,83L,91M,116A,120S,124M,128D,143G,148V,154K,169F,178T,180D,187D,203R,208G
AY463223C.ZA.J54MaSouth Africa: Durbangenomic RNAwoman with heterosexual transmission asher primary risk factor; sample date 01/2001subtype: C12316L,27I,36I,41T,71D,83L,87P,98D,116A,124V,128D,148V,169F,178T,187D,203R,208G