<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Monaco (2016) The Balance Between Transmitted Pre-adapted and Non-adapted Polymorphisms in the Gag Protein is a Major Determinant of HIV-1 Disease Progression J Exp Med. 2016 Sep 19;213(10):2049-63 6.08e-162 46 46 Naive Plasma Direct PCR HLA

Download sequences

AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
KU043117ZM1008FZambia14-Mar-2007genomic RNAsubtype: C12316H,14V,15L,27I,41T,50S,71D,83L,87Q,111T,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KU043118ZM1023FZambia27-Jul-2007genomic RNAsubtype: C123114P,27I,41T,71D,83L,110N,116A,120G,124V,128D,148V,169F,180D,187D,203R,208G
KU043119ZM1076FZambia01-Nov-2006genomic RNAsubtype: C123127I,41T,71D,83L,86AV,87Q,96I,116T,118I,120G,148V,154K,169F,178T,187D,199R,200N,203R,208G,225S
KU043120ZM1146FZambia04-Jan-2008genomic RNAsubtype: C12316L,27I,36I,41T,71D,83L,87Q,91V,96L,110N,116A,124V,128D,148V,169F,178T,180D,203R,208G,210S,225S
KU043121ZM1146MZambia04-Jan-2008genomic RNAsubtype: C12316L,27I,36I,41T,71D,83L,87HQ,91V,96L,110N,116A,124V,128D,148V,169F,178T,180D,203R,208G,210S,225S
KU043122ZM1167FZambia10-Apr-2007genomic RNAsubtype: C12316L,14S,15L,27IV,41T,71D,83T,116A,128D,148V,169F,178T,187D,208G,210N
KU043123ZM1801FZambia03-Nov-2007genomic RNAsubtype: C12316L,15L,27I,41T,45D,71D,83L,110NT,116A,120G,124V,148V,154K,169F,178T,180D,203R,208G,210S,225S
KU043124ZM1801MZambia03-Nov-2007genomic RNAsubtype: C12316L,15L,27I,41T,45D,50X,71D,83L,116A,120G,124V,128DE,148V,154K,169F,178T,180D,203R,208G,210S,225S
KU043125ZM236FZambia15-Feb-2003genomic RNAsubtype: C12316H,14P,27I,41T,71D,83L,91V,107S,110N,116A,120G,128D,148V,154K,169F,171A,180D,187D,203R,204G,207Q,208G,210S,225S
KU043126ZM266MZambia10-Sep-2003genomic RNAsubtype: C12316L,15L,16T,27I,41T,71D,83L,116A,120S,124V,148V,152E,154K,169F,170R,171V,180D,187D,207S,208G,225S
KU043127ZM268FZambia14-Feb-2004genomic RNAsubtype: C12316FL,14P,15L,27I,31G,33N,41T,71D,83ILM,86ALPV,87Q,91IV,96IM,110N,116X,120DGNS,128D,135IV,148V,154K,169F,178T,180DE,187D,203R,208G
KU043128ZM320FZambia10-Dec-2005genomic RNAsubtype: C12316L,14P,27I,41T,71D,83M,91V,116A,120S,124V,148V,169F,178T,187D,201L,208G,210S,225S
KU043129ZM320MZambia10-Dec-2005genomic RNAsubtype: C12316L,14P,27I,41T,71D,83M,91V,116A,120S,124V,148V,169F,178T,187D,201L,208G,210S,225S
KU043130ZM3469FZambia29-Jan-2010genomic RNAsubtype: C12316L,27I,41T,71D,83L,94N,96I,98D,116Q,120S,128D,148V,169F,178T,180D,203R,204G,207Q,208G
KU043131ZM3469MZambia29-Jan-2010genomic RNAsubtype: C12316L,27I,41T,71D,83L,94N,96I,98D,116Q,120S,128D,148V,169F,178T,180D,203R,204G,207Q,208G
KU043132ZM3576MZambia18-Apr-2009genomic RNAsubtype: C12316L,15L,27I,41T,71D,75D,83L,91V,92V,116A,118I,120G,124V,148V,154K,169F,177G,178T,187D,203R,208G
KU043133ZM3618FZambia11-Jul-2009genomic RNAsubtype: C12316L,14AV,15IL,27I,41T,50T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KU043134ZM3678FZambia23-Sep-2009genomic RNAsubtype: C123115L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KU043135ZM634MZambia21-Aug-2007genomic RNAsubtype: C12316L,14P,15L,27I,41T,71D,83L,87P,91V,98D,110N,116A,120S,128D,148V,169F,178T,180D,187D,203R,208G,210S
KU043136ZMN103MZambia17-Sep-2008genomic RNAsubtype: C12316L,27I,41T,71D,83T,87HP,91IV,98DE,116N,120G,128D,148V,154K,169F,178T,180D,203R,208G
KU043137ZMN133FZambia16-Aug-2007genomic RNAsubtype: C12316L,14P,15L,27I,41T,71D,83L,91AV,110N,116A,120S,128D,148V,154KR,169F,178ST,183DGNS,187D,203R,208G,210S,225S
KU043138ZMN133MZambia16-Aug-2007genomic RNAsubtype: C12316L,14P,15L,27I,41T,71D,83L,91A,110N,116A,120S,128D,148V,154K,169F,178T,183G,187D,203R,208G,210S,225S
KU043139ZMN164FZambia07-Aug-2009genomic RNAsubtype: C12316L,15L,27I,41T,71D,83L,110N,115IV,116A,120A,123AP,148V,154K,169F,171V,180DE,183DGNS,187D,191I,207Q,208G,210S
KU043140ZMN16FZambia07-Jun-2007genomic RNAsubtype: C12316L,14S,27I,41T,83S,87Q,96L,113D,116A,120A,128D,148V,154K,180D,187D,203R,208G,211I,225S
KU043141ZMN236FZambia12-Feb-2009genomic RNAsubtype: C12316L,27I,41T,71D,83L,86AV,87Q,96I,116T,120NS,124IV,148V,154K,169F,178T,183G,187D,203R,208G,210S,225S
KU043142ZMN27FZambia06-Feb-2007genomic RNAsubtype: C12316L,27I,31G,33N,41T,71D,83L,91IV,116A,120NS,128DE,135V,148V,154K,169F,177S,187D,200NT,203R,207S,208G,225S
KU043143ZMN27MZambia13-Feb-2007genomic RNAsubtype: C12316L,27I,31G,33N,41T,71D,83L,116A,135V,148V,154K,169F,177S,187D,203R,207S,208G,225S
KU043144ZMN282MZambia17-Apr-2009genomic RNAsubtype: C12316L,27I,41T,71D,79D,83L,91M,93A,113DE,116A,120G,136I,148V,169F,178T,183G,187D,203R,208G
KU043145ZMN290MZambia04-Jun-2010genomic RNAsubtype: C12316L,14P,15L,31G,33N,41T,52M,71D,83L,86A,87Q,91F,92P,93A,96I,116H,120S,148V,154K,160S,169F,178T,180D,187D,208G,210S
KU043146ZMN31FZambia28-Apr-2007genomic RNAsubtype: C12316L,14P,15M,27I,41T,50S,71D,83L,91V,96L,116A,128D,148V,154K,169F,178T,180D,187D,203R,208G
KU043147ZMN31MZambia28-Apr-2007genomic RNAsubtype: C12316L,15M,27I,41T,50S,54S,71D,83L,91V,96L,116A,128D,148V,154K,169F,178T,180D,187D,203R,208G
KU043148ZMN320MZambia20-Feb-2009genomic RNAsubtype: C12316L,14P,15L,27I,41T,71D,83L,92P,93PT,110N,116A,120GS,124V,128D,148V,169F,178T,180D,187D,203R,208G,225S
KU043149ZMN34FZambia05-Sep-2007genomic RNAsubtype: C123131G,33N,41T,68I,71D,83L,87Q,91V,96I,116T,120S,121T,128D,129L,148V,154K,169F,178T,180D,187D,203R,204G,207Q,208G,210S,225GS,229KR
KU043150ZMN34MZambia05-Sep-2007genomic RNAsubtype: C123131G,33N,41T,68I,71D,83L,87Q,91V,96I,116T,120S,121T,128D,129L,148V,154K,169F,178T,180D,187D,203R,204G,207Q,208G,210S,225S
KU043151ZMN375FZambia06-May-2009genomic RNAsubtype: C12316L,14P,15L,27I,41T,71D,91A,116T,120S,128D,148V,169F,178T,180D,187D,208G
KU043152ZMN375MZambia06-May-2009genomic RNAsubtype: C12316L,14P,15L,27I,41T,71D,91A,116AT,120S,128D,148V,169F,178T,180D,187D,208G
KU043153ZMN401MZambia14-Apr-2010genomic RNAsubtype: C12316L,14S,15L,41T,54V,75D,83T,87Q,91V,96I,116Q,120S,128D,148V,154K,169F,178T,180D,187D,191I,203R,208G,211I,225S
KU043154ZMN41FZambia17-Jan-2008genomic RNAsubtype: C12316L,15L,41T,71D,83L,116A,120S,123A,148V,154K,169F,177S,187D,203R,208G,225S,230I
KU043155ZMN41MZambia17-Jan-2008genomic RNAsubtype: A1,C12316L,15L,41T,71D,83LV,91IV,116A,120S,123AP,148V,154K,169F,177S,178ST,187D,203R,208G,225S,230I
KU043156ZMN44MZambia09-Jun-2007genomic RNAsubtype: C12316L,27I,41T,71D,83I,91V,116T,120S,124V,148V,154K,169F,178T,187D,200V,203R,204G,208G
KU043157ZMN586MZambia22-Apr-2010genomic RNAsubtype: C12316L,14T,15L,27I,41T,50A,71D,83L,87Q,91V,96I,98D,116A,120S,124V,128DE,148V,154K,169F,178T,180D,183AG,187D,203R,208G,210S,225S
KU043158ZMN59FZambia14-Aug-2008genomic RNAsubtype: C12316L,13N,14P,15IL,27I,41T,71D,83LV,116A,120S,128D,148V,154K,169F,178T,180D,187D,191I,203R,208G
KU043159ZMN59MZambia14-Aug-2008genomic RNAsubtype: C12316L,13N,14P,15L,27I,41T,71D,116A,120S,128D,148V,154K,169F,178T,180D,187D,191I,203R,208G
KU043160ZMN63MZambia09-Jul-2008genomic RNAsubtype: C12316L,13N,14P,27I,29D,41T,71D,83L,96I,116T,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KU043161ZMN8FZambia18-Nov-2006genomic RNAsubtype: C12313I,6V,12Y,14S,15L,27I,41T,71D,83LV,91N,116A,120S,124IM,128D,148V,154K,169F,177S,178T,187D,203R,208G
KU043162ZMN8MZambia18-Nov-2006genomic RNAsubtype: C12313I,6G,12Y,14S,15L,27I,41T,71D,83L,91N,116A,120S,124M,128D,148V,154K,169F,177S,178T,187D,203R,208G

Database

Resources

Team