Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Hebberecht (2019)	Single genome sequencing of near full-length HIV-1 RNA using a limiting dilution approach	J. Virol. Methods 274, 113737 (2019)	5.01e-155	77	87	Naive	Plasma	SGS	Molecular epidemiology

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Accession	IsolateName	Country	Coll Date	MolType	Note	FirstAA	LastAA	MutList
MN485971	AA	Belgium	24-May-2013	genomic RNA	subtype: B/CRF50_A1D	1	231	6L,41T,87Q,91V,120S,180D,199R
MN485972	AB	Belgium	13-Aug-2013	genomic RNA	subtype: B	1	231	6L,83L,180D,225S,230I
MN485973	AC	Belgium	23-Sep-2013	genomic RNA	subtype: B	1	231	6L,83L,87P,128D,136I,170KR
MN485974	AD	Belgium	10-Mar-2014	genomic RNA	subtype: B	1	231	6L,83L
MN485975	AE	Belgium	17-Jun-2014	genomic RNA	subtype: CRF02_AG	1	231	6A,14S,27I,41T,46*G,54M,58I,71D,83T,92P,96Q,120S,135V,148V,169F,178T,200S,203R,208G
MN485976	AF	Belgium	06-Nov-2014	genomic RNA	subtype: B	1	231	6M,41T,83L,86PT,87Q,91V,96I,98D,116A,120S,124V,154K,183G
MN485977	AG	Belgium	07-Nov-2014	genomic RNA	subtype: A	1	231	6A,11I,15M,27I,41T,54M,58I,71D,83L,86A,87Q,91F,92P,93A,115V,120S,128D,148V,169F,178T,180D,203R,208G
MN485978	AH	Belgium	13-Nov-2014	genomic RNA	subtype: B	1	231	6M,36I,41T,91V,148V,200N,225S
MN485979	AI	Belgium	22-Dec-2014	genomic RNA	subtype: B	1	231	6L,14P,15L,16T,27I,41T,83L,110N,120S,148V,194S
MN485980	AJ	Belgium	24-Dec-2014	genomic RNA	subtype: B	1	231	6L,83L
MN485981	AK	Belgium	16-Feb-2015	genomic RNA	subtype: B	1	231	6M,41T,66I,115V,120S,180D
MN485982	AL	Belgium	23-Mar-2015	genomic RNA		1	231	2V,4P,6L,12Y,14S,27I,44A,71D,83L,86A,87Q,91F,92P,93L,116Q,120G,124V,148I,169F,178T,180D,194S,230I
MN485983	AM	Belgium	23-Mar-2015	genomic RNA	subtype: B/F1	1	231	2V,4P,6L,12Y,14S,27I,44A,71D,83L,86T,87Q,91F,92P,93A,96L,116Q,124V,148A,169F,178T,194S,206GR,225S,230I
MN485984	AN	Belgium	08-Apr-2015	genomic RNA	subtype: C	1	231	6L,11AV,12HY,14S,15IL,16AS,27I,41T,71D,83L,110N,116A,120S,124V,154K,169F,178T,187D,203R,208G,225S
MN485985	AO	Belgium	12-May-2015	genomic RNA	subtype: B	1	231	6L,27AV,83L,87P,128D,136M
MN485986	AP	Belgium	12-Jun-2015	genomic RNA	subtype: D/F1	1	231	6L,11I,27I,41T,50A,71D,83M,111P,116Q,120G,121T,124V,128D,135IV,148V,154K,169F,178T,180D,187D,203R,208G
MN485987	AQ	Belgium	21-Sep-2015	genomic RNA	subtype: D/F1	1	231	6L,11I,27I,41T,50A,71D,83M,116Q,120G,121T,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
MN485988	AR	Belgium	23-Dec-2015	genomic RNA	subtype: B	1	231	6L,14P,41T,83I,91V,120A,180D,199R
MN485989	AS	Belgium	20-Jan-2016	genomic RNA	subtype: F1	1	231	6L,14P,71D,83L,116Q,124V,148V,149G,169F,188S,203R,208G,225S
MN485990	AT	Belgium	12-Feb-2016	genomic RNA		1	231	6L,14P,15L,83L,96IM,116A,120H,148V,180D
MN485991	AU	Belgium	17-Feb-2016	genomic RNA	subtype: B	1	231	6L,14P,41T,83M,91V,110N,120A,180D,199R
MN485992	AV	Belgium	19-Feb-2016	genomic RNA	subtype: B/CRF02_AG	1	231	6A,11T,14S,15M,27I,41T,54M,58I,71D,91A,92P,120S,124V,148V,169F,178T,199R,200A,210S
MN485993	AW	Belgium	24-Feb-2016	genomic RNA	subtype: B	1	231	6M,27I,36I,83L,86A,87Q,91V,98D,120H,148V,154K
MN485994	AX	Belgium	03-Mar-2016	genomic RNA	subtype: B	1	231	6L,11T,14P,83L,87Q,91V,96I,110N,116A,120H,148IV,154K,180D,194S
MN485995	AY	Belgium	07-Mar-2016	genomic RNA	subtype: B	1	231	6M,14P,33N,41A,71D,83L,91V,120G,123A,132K,136M,148S,154K,180D
MN485996	AZ	Belgium	11-Mar-2016	genomic RNA	subtype: B	1	231	6L,14P,17A,83L,148V,180D,194S,225S,230I
MN485997	BA	Belgium	18-Apr-2016	genomic RNA		1	231	6L,83L,86P,87Q,96I,98D,116T,180D
MN485998	BB	Belgium	04-May-2016	genomic RNA		1	231	6L,41T,87Q,91V,120S,180D,199R
MN485999	BC	Belgium	29-Jun-2016	genomic RNA		1	231	6A,14S,15M,27I,54M,58I,71D,87Q,92P,96I,120S,135V,154K,169F,200A,201M,208G,225S
MN486000	BD	Belgium	20-Jul-2016	genomic RNA	subtype: B	1	231	6L,14S,83M,116A,120S,124V,154K,171V,180D
MN486002	BE	Belgium	02-Sep-2016	genomic RNA	subtype: B	1	231	6M,14P,33N,41A,71D,83L,91V,120G,123A,132K,136M,148S,154K,180D
MN486001	BF	Belgium	05-Sep-2016	genomic RNA	subtype: B	1	231	6L,15L,83L,87Q,91V,96I,116A,120H,154K,180D,208G
MN486003	BG	Belgium	07-Sep-2016	genomic RNA	subtype: B	1	231	6IL,41A,83L,87HP,91AITV,132K,136M,148V,180D,183T
MN486004	BH	Belgium	16-Sep-2016	genomic RNA	subtype: G/CRF02_AG	1	231	6A,14P,27I,41T,54M,58I,71DH,72A,83T,87Q,91M,92P,148V,169F,178T,183G,203R,207T,208G,225S
MN486005	BI	Belgium	19-Sep-2016	genomic RNA	subtype: B	1	231	6L,14P,15L,16T,27I,86P,87Q,91IV,96I,116T,120G,148V,178T,225GS
MN486006	BJ	Belgium	23-Sep-2016	genomic RNA	subtype: B/CRF02_AG	1	231	6A,11T,14S,15M,27I,54M,58I,71D,91A,92P,110N,120S,124V,148V,169F,178T,200A
MN486007	BK	Belgium	05-Oct-2016	genomic RNA	subtype: B/CRF02_AG	1	231	6A,11T,14S,15M,27I,41T,54M,58I,71D,91V,92P,110N,120S,124V,148V,169F,178T,199R,200A
MN486008	BL	Belgium	22-Oct-2016	genomic RNA	subtype: B	1	231	6L,14P,41A,83L,91V,132K,136M,154K,170R,178T
MN486009	BM	Belgium	27-Oct-2016	genomic RNA		1	231	6M,83L,87Q,96I,116T,124M,180D
MN486010	BN	Belgium	28-Nov-2016	genomic RNA	subtype: B	1	231	6L,41T,91V,120S,180D,194S,199R
MN486011	BO	Belgium	29-Feb-2016	genomic RNA		1	231	6L,27I,41T,71D,83I,91V,96I,116T,120S,124V,148V,169F,178T,180D,187D,203R,208G
MN486012	BP	Belgium	02-Dec-2016	genomic RNA	subtype: B	1	231	6L,15L,83L,86P,87Q,96I,98D,116A,148V,180D
MN486013	BQ	Belgium	09-Dec-2016	genomic RNA	subtype: B	1	231	6L,83T,87Q,116A,170R,180D
MN486014	BR	Belgium	19-Dec-2016	genomic RNA		1	231	6L,27I,71D,83L,86A,87Q,91V,98D,120S,148V,180D
MN486015	BS	Belgium	13-Feb-2017	genomic RNA	subtype: B	1	231	6L,83L,178ST,225S,230I
MN486016	BT	Belgium	14-Feb-2017	genomic RNA	subtype: A/B	1	231	6A,14T,15L,27I,58V,71D,83L,92P,111P,115L,116Q,120G,128D,148V,154K,169F,171A,178T,183G,194S,200S,208G
MN486017	BU	Belgium	15-Feb-2017	genomic RNA	subtype: A/B	1	231	6A,14T,15L,27I,58V,71D,83L,92P,111P,115L,116Q,120G,128D,148V,154K,169F,171A,178T,183G,194S,200AS,208G
MN486018	BV	Belgium	27-Feb-2017	genomic RNA	subtype: B	1	231	83L,91V,136M,187DE,208AG
MN486019	BW	Belgium	07-Mar-2017	genomic RNA	subtype: B	1	231	6L,83L,178T,225S,230I
MN486020	BX	Belgium	16-Mar-2017	genomic RNA		1	231	6L,71D,83L,120H,128D,136IM,180D,194S,225S
MN486021	BY	Belgium	04-Apr-2017	genomic RNA	subtype: B	1	231	6L,15L,27I,83L,116A,148V,187D,208G,225S
MN486022	BZ	Belgium	05-Apr-2017	genomic RNA	subtype: B	1	231	6L,14P,15V,16T,50L,91V,96L,116A,120H,132K,136I,148V,149C,200S
MN486023	CA	Belgium	13-Apr-2017	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,41T,54M,58I,83I,86I,87Q,91F,92P,96I,116A,120S,128D,148V,163E,178T,200S,207T,208G,225S
MN486024	CB	Belgium	03-May-2017	genomic RNA	subtype: B	1	231	6A,41A,68I,83M,132K,136M,180D
MN486025	CC	Belgium	03-May-2017	genomic RNA	subtype: B	1	231	6L,27I,83L,148V,154K,180D,200I,204S,230I
MN486026	CD	Belgium	29-Jun-2017	genomic RNA	subtype: B	1	231	6L,83T,91V,116A,120G,123A,154K,171V,180D,210ST
MN486027	CE	Belgium	05-Jul-2017	genomic RNA	subtype: B	1	231	6L,29D,31G,33N,83L,87Q,91V,120H,141V,143K,148V,178T,208G
MN486028	CF	Belgium	24-Jul-2017	genomic RNA	subtype: B	1	231	6L,14S,15L,27I,86A,87Q,96I,116T,148V,154K,178T
MN486029	CG	Belgium	25-Jul-2017	genomic RNA	subtype: B	1	231	6L,14P,15L,41T,83L,87Q,91V,107S,120S,148V,149G,154K,191I,200H
MN486030	CH	Belgium	29-Aug-2017	genomic RNA	subtype: F1	1	231	4P,6P,11I,12Y,14S,15L,27I,44A,75D,83L,86P,87Q,91V,96I,98D,116Q,120S,148V,169F,171A,178T,187D,208G,210N
MN486031	CI	Belgium	04-Sep-2017	genomic RNA	subtype: B	1	231	6L,15L,27I,83L,120H,148V,149C,154K
MN486032	CJ	Belgium	02-Oct-2017	genomic RNA	subtype: B	1	231	6L,14P,15L,41T,83L,107S,116A,120S,148V,149G,154K,200H
MN486033	CK	Belgium	02-Jan-2018	genomic RNA	subtype: CRF02_AG	1	231	6A,14S,15M,27I,54M,58I,71D,79D,83T,92P,120S,124V,135IN,136LQ,154K,169F,178T,180D,187D,203R,208G,225S
MN486034	CL	Belgium	21-Nov-2018	genomic RNA	subtype: B	1	231	6L,15L,83L,120H,136M,178T,194S,225S,230I
MN486035	CM	Belgium	27-Mar-2017	genomic RNA	subtype: CRF01_AE	1	231	6AT,15L,31G,33N,54M,58I,79D,83A,92P,120NS,148V,178T,200S,207T,208G,225S
MN486036	CN	Belgium	30-Sep-2014	genomic RNA	subtype: B	1	231	6L,27I,71D,83L,91V,96I,110N,116A,148V,180D
MN486037	CO	Belgium	04-Oct-2016	genomic RNA	subtype: B	1	231	6L,27I,41T,83L,116A,124V,154K,178T,194S
MN486038	CP	Belgium	05-Sep-2016	genomic RNA	subtype: B	1	231	6L,15L,27I,83L,87Q,91V,120H,136M,141V,143K,148V,178ST,180D,208G
MN486039	CQ	Belgium	16-Mar-2017	genomic RNA		1	231	6L,14P,27I,41T,83L,124V,148V,180D,194S,225S,230I
MN486040	CR	Belgium	02-Feb-2017	genomic RNA	subtype: B	1	231	6L,15L,83L,87Q,91V,96I,116A,120H,154K,180D,205M,208G
MN486041	CS	Belgium	02-Jun-2016	genomic RNA	subtype: B	1	231	6L,14S,15L,27I,83M,87Q,96I,116T,148V,154K,178T
MN486042	CT	Belgium	18-Feb-2003	genomic RNA		1	231	27I,83L,87Q,91N,92P,93A,107A,116A,120S,148V,180D,183T
MN486043	CU	Belgium	28-Mar-2003	genomic RNA		1	231	6L,27I,50S,54S,58A,83L,87Q,91V,98D,120S,128D,148V,154K,160PS,178T,208G,213D,225S
MN486044	CV	Belgium	25-Feb-2008	genomic RNA		1	231	6A,41T,71D,83M,86P,87Q,96I,116T,120S,148V,154K,169F,171AITV,183H,187D,203R,210S,225S,230I
MN486045	CW	Belgium	28-Sep-2006	genomic RNA		1	231	6A,27I,31S,54S,58I,71D,83L,86P,87Q,91F,92P,96I,98D,116R,120S,148V,169F,178T,203R,208G,210S,211V,225S
MN486046	CX	Belgium	13-Dec-2006	genomic RNA		1	231	6A,50S,54A,71D,83L,92P,116T,120G,123V,128D,148V,169F,180D,187N,203R,207Q,208G,210S,211I
MN486047	CY	Belgium	29-Nov-2016	genomic RNA		1	231	6L,56LV,83M,87Q,91V,120S,154K,171V,180D,194S

Genbank References: capsid (p24)

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