Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Durand (2016)	HIV-1 Gag evolution in recently infected human leukocyte antigen-B*57 patients with low-level viremia	AIDS 24 (15), 2405-2408 (2010)	3.99e-167	67	5	Naive	Plasma	Uncertain	HLA

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Accession	IsolateName	Country	Coll Date	MolType	Source	FirstAA	LastAA	MutList
HM241776	RH014.0706.gagpc1	USA	Jul-2006	genomic RNA	plasma	1	231	6L,15L,83L,91V,110N,116N,120G,123A,136M,154K,216S,225S
HM241777	RH014.0706.gagpc2	USA	Jul-2006	genomic RNA	plasma	1	231	6L,15L,83L,91V,110N,116N,120G,123A,136M,154K,216S,225S
HM241768	RH014.0706.plcl10	USA	Jul-2006	genomic RNA	plasma	1	231	6L,15L,83L,91V,110N,116N,120G,123A,136M,154K,216S,225S
HM241769	RH014.0706.plcl12	USA	Jul-2006	genomic RNA	plasma	1	231	6L,15L,83L,91V,110N,116N,120G,123A,136M,154K,216S,225S
HM241770	RH014.0706.plcl13	USA	Jul-2006	genomic RNA	plasma	1	231	6L,15L,83L,91V,110N,116N,120G,123A,136M,154K,216S,225S
HM241771	RH014.0706.plcl3	USA	Jul-2006	genomic RNA	plasma	1	231	6L,15L,83L,91V,110N,116N,120G,123A,136M,154K,184*CW,198G,205W,214X,216S,225INST,230X
HM241772	RH014.0706.plcl5	USA	Jul-2006	genomic RNA	plasma	1	231	6L,15L,83L,91V,110N,116N,120G,123A,136M,154K,216S,225S
HM241773	RH014.0706.plcl7	USA	Jul-2006	genomic RNA	plasma	1	231	6L,15L,61AEGV,63X,64APST,65P,67FILV,68Y,69CFSY,70X,73FILV,74DHNY,76AEGV,77Y,79Y,82T,83L,85HQ,87L,88E,90A,91ADGV,92ADGV,93AP,94CGRS,95R,96KMRT,97KMRT,98EKQ,99X,100GRW,101GRW,102G,103X,105X,106X,107X,108X,109X,110X,111X,112X,113LPQR,115L,116CFSY,118V,119IM,120X,121DHNY,123A,125Q,126X,134IKRT,136M,138LS,141X,142X,153IKRT,154K,165AEGV,172LPQR,181AEGV,185KMRT,202LS,211LPQR,214KMRT,216S,225S
HM241774	RH014.0706.plcl8	USA	Jul-2006	genomic RNA	plasma	1	231	6L,15L,83L,91V,110N,116N,120G,123A,136M,154K,216S,225S
HM241775	RH014.0706.plcl9	USA	Jul-2006	genomic RNA	plasma	1	231	6L,15L,83L,91V,110N,116N,120G,123A,136M,154K,216S,225S
HM241778	RH014.1006.plcl1	USA	Oct-2006	genomic RNA	plasma	1	231	6L,14P,15L,83L,91V,110N,113DE,116N,120G,123A,136M,154K,216S,225S
HM241779	RH014.1006.plcl2	USA	Oct-2006	genomic RNA	plasma	1	231	6L,14P,15L,83L,91V,110N,113DE,116N,120G,123A,136M,154K,216S,225S
HM241790	RH014.1208.1	USA	Dec-2008	genomic RNA	plasma	1	231	6L,14P,15L,83L,91V,110N,116N,120G,123A,136M,154K,216S,225S
HM241788	RH014.1208.3	USA	Dec-2008	genomic RNA	plasma	1	201	6L,14P,15L,83L,91V,110N,116N,120G,123A,136M,154K
HM241789	RH014.1208.6	USA	Dec-2008	genomic RNA	plasma	1	231	6L,14P,15L,83L,91V,110N,116N,120G,123A,136M,152G,153H,154K,210S,216A,225S
HM241786	RH014.1208.gagpc1	USA	Dec-2008	genomic RNA	plasma	1	231	6L,14P,15L,83L,91V,110N,116N,120G,123A,136M,154K,203R,216A,225S
HM241787	RH014.1208.gagpc2	USA	Dec-2008	genomic RNA	plasma	1	231	6L,14P,15L,83L,91V,110N,116N,120G,123A,136M,154K,203R,216A,225S
HM241780	RH014.1208.plcl1	USA	Dec-2008	genomic RNA	plasma	1	231	6L,14P,15L,83L,91V,110N,116N,120G,123A,136M,154K,210S,216A,225S
HM241781	RH014.1208.plcl2	USA	Dec-2008	genomic RNA	plasma	1	231	6L,14P,15L,83L,91V,110N,116N,120G,123A,136M,154K,203R,216A,225S
HM241782	RH014.1208.plcl3	USA	Dec-2008	genomic RNA	plasma	1	231	6L,14P,15L,83L,91V,110N,116N,120G,123A,136M,154K,203R,210S,216A,225S
HM241783	RH014.1208.plcl4	USA	Dec-2008	genomic RNA	plasma	1	231	6L,14P,15L,83L,91V,110N,116N,120G,123A,136M,154K,203R,216A,225S
HM241784	RH014.1208.plcl5	USA	Dec-2008	genomic RNA	plasma	1	231	6L,14P,15L,83L,91V,110N,116N,120G,123A,136M,154K,203R,216A,225S
HM241785	RH014.1208.plcl6	USA	Dec-2008	genomic RNA	plasma	1	231	6L,14P,15L,83L,91V,110N,116N,120G,123A,136M,154K,203R,216A,225S
HM241761	RH014.plgag1.120105	USA	Dec-2005	genomic RNA	plasma	1	231	6L,83L,91V,110N,116N,120G,123A,136M,154K,216S,225S
HM241762	RH014.plgag2.120105	USA	Dec-2005	genomic RNA	plasma	1	231	6L,83L,91V,110INST,113DE,116N,120G,123A,136M,154K,216S,225S
HM241763	RH014.plgag3.120105	USA	Dec-2005	genomic RNA	plasma	1	231	6L,83L,91V,110N,113DE,116N,120G,123A,136M,154K,216S,225S
HM241764	RH014.plgag4.120105	USA	Dec-2005	genomic RNA	plasma	1	231	6L,83L,91V,113DE,116INST,120G,123A,136M,154K,216S,225S
HM241765	RH014.plgag5.120105	USA	Dec-2005	genomic RNA	plasma	1	231	6L,83L,91V,116N,120G,123A,136M,154K,216S,225S
HM241766	RH014.plgag6.120105	USA	Dec-2005	genomic RNA	plasma	1	231	6L,83L,91V,110INST,116N,120G,123A,136M,154K,216S,225S
HM241767	RH014.plgag7.120105	USA	Dec-2005	genomic RNA	plasma	1	231	6L,83L,91V,116INST,120G,123A,136M,154K,216S,225S
HM241821	RH062.1208.1	USA	Dec-2008	genomic RNA	plasma	1	231	4R,6L,14P,17A,91V,116D,148V,180D
HM241822	RH062.1208.3	USA	Dec-2008	genomic RNA	plasma	1	231	4R,6L,14P,17A,65X,69FL,71*EKQ,83X,91AEGV,108S,109E,110S,116D,139I,148V,180D,188APST,212DE
HM241823	RH062.122208.plcl1	USA	Dec-2008	genomic RNA	plasma	1	231	4R,6L,14P,17A,91V,116D,148V,180D
HM241824	RH062.122208.plcl2	USA	Dec-2008	genomic RNA	plasma	1	231	4R,6L,14P,17A,91V,116D,148V,180D
HM241819	RH062.307.c	USA	Mar-2007	genomic RNA	plasma	1	231	6L,14P,17A,64R,91V,116D,148V,180D
HM241815	RH062.plgag1.032307	USA	Mar-2007	genomic RNA	plasma	1	231	4R,6L,14P,17A,91V,116D,148V,180D
HM241816	RH062.plgag2.032307	USA	Mar-2007	genomic RNA	plasma	1	231	6L,14P,17A,91V,116D,148V,180D
HM241817	RH062.plgag3.032307	USA	Mar-2007	genomic RNA	plasma	1	231	6L,14P,17A,78APST,91V,116D,148V,180D
HM241818	RH062.plgag4.032307	USA	Mar-2007	genomic RNA	plasma	1	231	4R,6L,14P,17A,91V,116D,148V,180D
HM241820	RH062.plgag5.032307	USA	Mar-2007	genomic RNA	plasma	1	231	6L,14P,17A,91V,116D,148V,180D
HM241810	RH103.0609.plgag1	USA	Jun-2009	genomic RNA	plasma	1	231	6L,50A,59I,83L,91V,110N,115V,116A,120S,128D,154K,178T
HM241813	RH103.0609.plgag2	USA	Jun-2009	genomic RNA	plasma	1	231	6L,50A,59I,83L,91V,110N,115V,116A,120S,128D,154K,178T
HM241809	RH103.0609.plgag3	USA	Jun-2009	genomic RNA	plasma	1	231	6L,50A,59I,83L,91V,110N,115V,116A,120S,128D,154K,178T
HM241812	RH103.0609.plgag4	USA	Jun-2009	genomic RNA	plasma	1	231	6L,50A,59I,83L,91V,110N,115V,116A,120S,128D,135FILV,154K,178T
HM241811	RH103.0609.plgag5	USA	Jun-2009	genomic RNA	plasma	1	231	6L,50A,59I,83L,91V,110N,115V,116A,120S,128D,154K,178T,200INST
HM241814	RH103.0609.plgag6	USA	Jun-2009	genomic RNA	plasma	1	231	6L,50A,59I,83L,91V,110N,115V,116A,120S,128D,154K,178T
HM241805	RH103.120108.gagpl1	USA	Dec-2008	genomic RNA	plasma	1	231	6L,50A,59I,83L,91V,110N,115V,116A,120S,128D,154K,178T
HM241806	RH103.120108.gagpl3	USA	Dec-2008	genomic RNA	plasma	1	231	6L,50A,59I,83L,91V,110N,115V,116A,120S,128D,154K,178T
HM241807	RH103.120108.gagpl4	USA	Dec-2008	genomic RNA	plasma	1	231	6L,50A,59I,83L,91V,110N,115V,116A,120S,128D,154K,178T
HM241808	RH103.120108.gagpl5	USA	Dec-2008	genomic RNA	plasma	1	231	6L,50A,59ILV,83L,91V,110N,115V,116A,120S,128D,154K,178T
HM241802	RH103.208.1	USA	Feb-2008	genomic RNA	plasma	1	231	6L,50A,83L,91V,113DE,115V,116A,120S,128D,154K,178T
HM241803	RH103.208.2	USA	Feb-2008	genomic RNA	plasma	1	231	6L,50A,83L,91V,113D,115V,116A,120S,128D,154K,178T
HM241804	RH103.208.3	USA	Feb-2008	genomic RNA	plasma	1	231	6L,50A,83L,91V,113D,115V,116A,120S,128D,154K,178T
HM241791	RH113.0608.plgagcl2	USA	Jun-2008	genomic RNA	plasma	1	231	6L,27I,41T,83L,91Q,116A,154K,178T,194S,208G,229K
HM241792	RH113.0608.plgagcl2.1	USA	Jun-2008	genomic RNA	plasma	1	231	6L,27I,41T,83L,91Q,116A,154K,178T,194S,208G,229K
HM241793	RH113.0608.plgagcl2.2	USA	Jun-2008	genomic RNA	plasma	1	231	6L,27I,41T,83L,91Q,116T,154K,178T,194S,208G
HM241794	RH113.1108.1	USA	Nov-2008	genomic RNA	plasma	1	231	6L,14P,27I,41T,83L,91Q,110N,116A,154K,178T,194S,208G
HM241795	RH113.1108.2	USA	Nov-2008	genomic RNA	plasma	1	231	6L,14P,27I,41T,83L,91Q,110N,116A,154K,178T,194S,208G
HM241796	RH113.1108.3	USA	Nov-2008	genomic RNA	plasma	1	231	6L,14P,27I,41T,83L,91Q,110N,116A,154K,178T,194S,208G
HM241797	RH113.1108.c1	USA	Nov-2008	genomic RNA	plasma	1	231	6L,14P,27I,41T,83L,91Q,110N,116A,154K,178T,194S,199KN,208G
HM241798	RH113.1108.c2	USA	Nov-2008	genomic RNA	plasma	1	231	6L,14P,27I,41T,83L,91Q,110N,116A,154K,178T,194S,208G
HM241799	RH113.509.1	USA	May-2009	genomic RNA	plasma	1	231	6L,14P,27I,41T,83L,91Q,110N,116A,154K,178T,194S,208G
HM241800	RH113.509.2	USA	May-2009	genomic RNA	plasma	1	231	6L,14P,27I,41T,83L,91Q,110N,116A,154K,178T,194S,208G
HM241801	RH113.509.3	USA	May-2009	genomic RNA	plasma	1	231	6L,14P,27I,41T,83L,91Q,110N,116A,154K,178T,194S,208G
HM241825	X01.040808clpl	USA	Apr-2008	genomic RNA	plasma	1	231	6L,41T,73FILV,75D,83L,84HLPR,91V,98DE,116E,154K,180D,203R
HM241828	X01.509.1	USA	May-2009	genomic RNA	plasma	1	231	6L,15L,41T,83L,91V,112R,116D,154K,180D,203R
HM241827	X01.509.3	USA	May-2009	genomic RNA	plasma	1	231	6L,15L,41T,83L,91V,112R,116D,154K,180D,203R

Genbank References: capsid (p24)

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