<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Chang (2020) HIV-1 genetic diversity and recombinant forms among men who have sex with men at a sentinel surveillance site in Xi'an City, China Infect. Genet. Evol. 81, 104257 (2020) 1.08e-155 56 56 Naive Plasma Direct PCR Molecular epidemiology

Download sequences

AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
MN336608MSM20181080China: Shaanxigenomic RNAsubtype: C(100.0%)12016L,14P,68I,71D,83L,96I,116T,120G,124V,128D,154K,169F,178T,180D,187D
MN336609MSM20181308China: Shaanxigenomic RNAsubtype: 01_AE(100.0%)12016A,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S
MN336610MSM20181719China: Shaanxigenomic RNAsubtype: 01_AE(100.0%)12016A,14S,15M,16T,27I,31G,33N,37V,54M,58I,79D,83T,87Q,92P,96I,116A,128D,139H,148V,178T
MN336611MSM20181910China: Shaanxigenomic RNAsubtype: 01_AE(100.0%)12056A,14P,15V,31G,33N,54M,58I,83T,86A,87Q,91F,92P,96I,116V,128D,148V,149G,154K,178T,200A,201X,203R
MN336612MSM20182073China: Shaanxigenomic RNAsubtype: 01_AE(92.9%),B(7.1%)12046A,14P,31G,33N,54M,58I,79D,87P,96I,110N,116A,148V,178T,200S
MN336613MSM20182158China: Shaanxigenomic RNAsubtype: 01_AE(89.1%),B(10.9%)12106A,14P,15L,31G,33N,54M,58I,79D,83L,87Q,96I,110N,116A,148V,178T,200S,207T,208G
MN336614MSM20182315China: Shaanxigenomic RNAsubtype: B(100.0%)12016L,14P,16A,27I,41T,83M,120S,135V,154K,178T
MN336615MSM20182340China: Shaanxigenomic RNAsubtype: B(0.7%),C(99.3%)12052V,6L,14P,41T,68I,71D,83L,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R
MN336616MSM20182378China: Shaanxigenomic RNAsubtype: B(3.8%),C(96.2%)12046L,14P,68I,71D,83L,96I,116T,120G,124V,128D,154K,169F,178T,180D,187D,203R
MN336617MSM20182407China: Shaanxigenomic RNAsubtype: C(100.0%)12046L,15L,41T,68I,71D,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R
MN336618MSM20182414China: Shaanxigenomic RNAsubtype: B(3.7%),C(96.3%)12086L,68I,71D,83L,86A,91N,92P,93A,116A,120S,124V,128D,154K,169F,171C,178T,180D,187D,201X,203R,208G
MN336619MSM20182415China: Shaanxigenomic RNAsubtype: B(100.0%)12016L,14P,27I,41T,83L,87Q,91H,92P,154K,194S
MN336620MSM20182453China: Shaanxigenomic RNAsubtype: B(6.9%),C(93.1%)12016L,68I,71D,83L,116A,120S,124V,128D,154K,169F,178T,180D,187D
MN336621MSM20182454China: Shaanxigenomic RNAsubtype: B(0.8%),C(99.2%)12316L,15L,68I,71D,83LV,91ALPV,110N,113EG,116A,120S,124V,128D,132KR,136M,148IT,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MN336622MSM20182455China: Shaanxigenomic RNAsubtype: B(0.7%),C(99.3%)12026L,14P,41T,68I,71D,83L,116A,120S,124V,128D,154K,169F,178T,180D,187D
MN336623MSM20182544China: Shaanxigenomic RNAsubtype: C(100.0%)121014P,68I,71D,83L,96I,116T,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S
MN336624MSM20182611China: Shaanxigenomic RNAsubtype: B(0.6%),C(99.4%)12016L,14P,41T,71D,83L,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D
MN336625MSM20182708China: Shaanxigenomic RNAsubtype: 01_AE(100.0%)12016A,11T,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,116A,120S,128D,148V,178T,200S
MN336526MSM20182722China: Shaanxi11-May-2018genomic RNAsubtype: CRF01_AE(27.8%),B(13.5%),C(58.7%),H(0.0%)123114P,68I,71D,83L,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MN336527MSM20182747China: Shaanxi11-May-2018genomic RNAsubtype: CRF01_AE(46.6%),B(11.2%),C(42.3%)12316A,14P,15V,31G,33N,54M,58I,83T,92P,96I,116A,128D,148V,178T,200S,207T,208G,225S
MN336626MSM20182812China: Shaanxigenomic RNAsubtype: B(4.1%),C(95.9%)12016L,14P,68I,71D,83L,116AT,120S,124V,128D,154K,169F,178T,180D,187D
MN336627MSM20182843China: Shaanxigenomic RNAsubtype: 01_AE(100.0%)12076A,15V,31G,33N,54M,58I,83T,87Q,88V,91H,92P,96I,112H,116A,128D,148V,178T,200A,203R,207T
MN336628MSM20182861China: Shaanxigenomic RNAsubtype: B(4.0%),C(96.0%)120414P,17A,41T,68I,71D,83L,91N,92P,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,202*,204H
MN336629MSM20182864China: Shaanxigenomic RNAsubtype: C(100.0%)12063I,6L,15L,41T,68I,71D,115V,116A,120A,124V,128D,154K,169F,178T,180D,187D,201X,203R
MN336630MSM20182868China: Shaanxigenomic RNAsubtype: 01_AE(100.0%)12056A,14P,15V,31G,33N,54M,58I,83LV,116A,128D,148V,178T,200A
MN336631MSM20182880China: Shaanxigenomic RNAsubtype: C(100.0%)12096L,14P,41T,68I,71D,83L,116A,120S,121T,124V,128D,154K,169F,178T,180D,187D,203R,208G
MN336632MSM20182930China: Shaanxigenomic RNAsubtype: B(8.5%),C(91.5%)12016L,68I,71D,83L,116A,120S,124V,128D,136M,154K,169F,178T,180D,187D
MN336633MSM20182946China: Shaanxigenomic RNAsubtype: 01_AE(100.0%)12046A,14P,15V,31G,33N,54M,58I,83T,87Q,92P,96I,116A,120S,128D,129L,148V,178T,200S
MN336634MSM20182977China: Shaanxigenomic RNAsubtype: B(0.7%),C(99.3%)12036L,14P,68I,71D,83L,96I,116T,120G,124V,128D,154K,169F,178T,180D,187D,203R
MN336528MSM20182980China: Shaanxi04-Jun-2018genomic RNAsubtype: CRF01_AE(38.0%),B(7.8%),C(54.1%)12316L,68I,71D,83L,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,211I,225S
MN336635MSM20182994China: Shaanxigenomic RNAsubtype: B(4.4%),C(95.6%)120814P,68I,71D,83L,91V,110N,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G
MN336636MSM20182999China: Shaanxigenomic RNAsubtype: B(4.4%),C(95.6%)120168I,71D,83L,116A,120S,121T,124V,128D,154K,169F,178T,180D,187D
MN336637MSM20183039China: Shaanxigenomic RNAsubtype: B(2.4%),C(97.6%)12076M,14P,68I,71D,83L,86I,91V,116A,120S,121T,124V,128D,154K,169F,178T,180D,187D,203R
MN336640MSM20183091China: Shaanxigenomic RNAsubtype: 01_AE(100.0%)12096A,14P,15IV,31G,33N,54M,58I,79D,83T,87Q,92P,96I,116A,148V,149G,154K,178T,200A,203R,207T,208G
MN336641MSM20183104China: Shaanxigenomic RNAsubtype: B(4.1%),C(95.9%)12046L,14P,68I,71D,83L,96I,116T,120G,124V,128D,154K,169F,178T,180D,187D,203R
MN336529MSM20183149China: Shaanxi13-Aug-2018genomic RNAsubtype:CRF01_AE(39.2%),B(9.1%),C(50.9%),D(0.8%),G(0.1%)123114P,68I,71D,83L,91V,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MN336642MSM20183289China: Shaanxigenomic RNAsubtype: 01_AE(100.0%)12056T,14P,15L,31G,33N,54M,58I,71D,83T,92P,96I,116A,120S,129L,148V,149G,178T,200S,201X
MN336643MSM20183312China: Shaanxigenomic RNAsubtype: B(2.3%),C(97.7%)12016L,14P,68I,71D,91V,96I,110S,116T,120G,124V,128D,154K,169F,178T,180D,187D
MN336644MSM20183356China: Shaanxigenomic RNAsubtype: 01_AE(100.0%)12106T,7H,12L,13L,14P,15L,19S,31G,32S,33E,34A,38I,41Y,47N,49A,54M,55T,58I,59A,61A,62L,83L,92P,120G,123A,128D,148V,178T,200S,207Q,208G
MN336646MSM20183388China: Shaanxigenomic RNAsubtype: 01_AE(100.0%)12016A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T
MN336647MSM20183408China: Shaanxigenomic RNAsubtype: B(0.7%),C(99.3%)12016L,14P,41T,71D,91N,92P,116A,120S,124V,128D,154K,169F,178T,180D,187D
MN336648MSM20183409China: Shaanxigenomic RNAsubtype: B(6.4%),C(93.6%)12016L,14P,68I,71D,83L,86I,96I,116T,120G,124V,128D,154K,169F,178T,180D,187D
MK564326MSM20183420China: Shaanxi09-Sep-2018genomic RNAsubtype: 01_AE(66.4%),B(0.6%),C(33.0%)12316L,14P,68I,71D,79D,83L,96I,116T,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I
MN336649MSM20183422China: Shaanxigenomic RNAsubtype: B(6.1%),C(93.9%)120514P,71D,83L,110N,116A,120S,124V,154K,169F,178T,180D,187D,201X,203R
MN336654MSM20183646China: Shaanxigenomic RNAsubtype: C(100.0%)12016L,13N,14P,68I,71D,116A,120G,124V,128D,154K,169F,178T,187D,188S
MN336655MSM20183726China: Shaanxigenomic RNAsubtype: 01_AE(100.0%)12016A,14P,15V,31G,33N,54M,58I,83T,87Q,92P,96I,116A,128D,148V,178T
MN336657MSM20183738China: Shaanxigenomic RNAsubtype: 01_AE(100.0%)12016A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,91F,92P,96L,116A,128D,148V,149G,200S
MN336658MSM20183765China: Shaanxigenomic RNAsubtype: 01_AE(100.0%)12056A,14S,15L,31G,33N,54M,58I,87Q,92P,96I,116A,128D,148V,149G,200S,201X
MN336659MSM20183786China: Shaanxigenomic RNAsubtype: 01_AE(100.0%)12046A,14P,15V,31G,49S,54M,58I,71D,79D,83T,87Q,92P,96I,116T,120G,148V,169F,178T,200S
MN336660MSM20183787China: Shaanxigenomic RNA12016L,14P,68I,71D,79D,83L,116A,120S,124V,128D,154K,169F,178T,180D,187D
MN336661MSM20183842China: Shaanxigenomic RNAsubtype: C(100.0%)12016L,15L,41T,68I,71D,116A,120S,124V,128D,154K,169F,178T,180D,187D,194S
MN336662MSM20183845China: Shaanxigenomic RNAsubtype: C(100.0%)12016F,14P,36I,71D,83L,116A,120S,121T,124V,126I,128D,154K,169F,178T,187D
MN336663MSM20183853China: Shaanxigenomic RNAsubtype: 01_AE(100.0%)12093M,6A,14P,15L,17A,31G,33N,46R,54S,58V,72A,83T,92P,115IV,116A,128D,148V,178T,200S,207T,208G
MN336664MSM20183928China: Shaanxigenomic RNAsubtype: B(0.7%),C(99.3%)12076L,11I,14P,41T,68I,71D,83L,91V,115IV,116A,120A,121T,124V,128D,154K,169F,178T,180D,187D,201X,203R
MN336531MSM20183940China: Shaanxi24-Dec-2018genomic RNAsubtype: CRF01_AE(32.9%),B(12.4%),C(54.6%)12316L,14P,68I,71D,83L,116A,120G,124V,128D,154K,169F,178T,180D,187D,200N,203R,208G,210S,211I,225S
MN336666MSM20183977China: Shaanxigenomic RNAsubtype: B(100.0%)12016L,15M,16ST,44A,68I,83L,91V,180D

Database

Resources

Team