Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Garcia-Knight (2016)	Viral Evolution and Cytotoxic T Cell Restricted Selection in Acute Infant HIV-1 Infection	Sci Rep 6, 29536 (2016)	2.96e-163	79	87	Naive	Plasma	Direct PCR	HLA

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Accession	IsolateName	Country	Coll Date	MolType	Source	Note	FirstAA	LastAA	MutList
KX302403	00KE135gag.M3	Kenya	2000	genomic RNA	in utero	subtype: A1	1	231	6A,11I,12L,14T,15L,27I,54M,58I,71D,83L,111P,115M,116A,120S,128D,148V,154K,169F,178T,200S,203R,208G
KX302404	00KE135gag.M6	Kenya	2000	genomic RNA	in utero	subtype: A1	1	231	6A,11I,12L,14T,15L,27I,54M,58I,71D,83L,111P,115M,116A,120S,128D,148V,154K,169F,178T,200S,203R,208G
KX302407	00KE159gag.M1	Kenya	2000	genomic RNA	peripartum	subtype: A1	1	231	6A,15L,27I,30R,44A,54M,58I,71D,82K,83L,92P,111P,120G,148V,154K,169F,180D,191I,200S,203R,208G
KX302408	00KE159gag.M3	Kenya	2000	genomic RNA	peripartum	subtype: A1	1	231	6A,15L,27I,30R,44A,54M,58I,71D,82K,83L,92P,111P,120G,148V,154K,169F,180D,191I,200S,203R,208G
KX302409	00KE168gag.M1	Kenya	2000	genomic RNA	peripartum	subtype: A1,D	1	231	6A,11I,15V,27I,54M,58I,71D,83L,87Q,111P,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KX302410	00KE168gag.M3	Kenya	2000	genomic RNA	peripartum	subtype: A1,D	1	231	6A,11I,15V,27I,54M,58I,71D,83L,87Q,111P,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KX302414	00KE170gag.M3	Kenya	2000	genomic RNA	in utero	subtype: A1	1	231	6A,14T,15L,27I,54L,58I,71D,83L,92P,110NT,111I,115V,120S,128D,148V,169F,178T,180D,200S,203R,207A,208G
KX302415	00KE170gag.M6	Kenya	2000	genomic RNA	in utero	subtype: A1	1	231	6A,14T,15L,27I,54L,58I,71D,83L,92P,110N,111I,115V,120S,128D,131KR,148V,169F,178T,180D,200S,203R,207A,208G
KX302420	00KE211gag.M1	Kenya	2000	genomic RNA	peripartum	subtype: CRF10,C	1	231	6L,27I,41T,50G,59I,71D,83L,87Q,91V,96L,116A,120H,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
KX302421	00KE211gag.M3	Kenya	2000	genomic RNA	peripartum	subtype: CRF10,C	1	231	6L,27I,41T,50G,59I,71D,83L,87Q,91V,96L,116A,120H,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
KX302424	00KE231gag.M9	Kenya	2000	genomic RNA	peripartum	subtype: A1,D	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,120S,121T,128D,148V,154K,169F,178T,183G,200S,203R,208G
KX302427	01KE135gag.M12	Kenya	2001	genomic RNA	in utero	subtype: A1	1	231	6A,11I,12L,14N,15L,27I,54M,58I,71D,83L,111P,115M,116A,120S,128D,148V,154K,169F,178T,200S,203R,208G
KX302428	01KE135gag.M9	Kenya	2001	genomic RNA	in utero	subtype: A1	1	231	6A,11I,12L,14T,15L,27I,54M,58I,71D,83L,111P,115M,116A,120S,128D,148V,154K,169F,178T,200S,203R,208G
KX302431	01KE159gag.M12	Kenya	2001	genomic RNA	peripartum	subtype: A1	1	231	6A,15L,27I,30R,44A,54M,58I,71D,82K,83L,92P,111P,120G,148V,154K,169F,180D,191I,200S,203R,208G
KX302432	01KE159gag.M15	Kenya	2001	genomic RNA	peripartum	subtype: A1	1	231	6A,15L,27I,30R,44A,54M,58I,71D,82K,83L,92P,111P,120G,148V,154K,169F,180D,191I,200S,203R,208G
KX302433	01KE159gag.M6	Kenya	2001	genomic RNA	peripartum	subtype: A1	1	231	6A,15L,27I,30R,44A,54M,58I,71D,82K,83L,92P,111P,120G,143KR,148V,154K,169F,180D,191I,200S,203R,208G
KX302434	01KE159gag.M9	Kenya	2001	genomic RNA	peripartum	subtype: A1	1	231	6A,15L,27I,30R,44A,54M,58I,71D,82K,83L,92P,111P,120G,148V,154K,169F,180D,191I,200S,203R,208G
KX302438	01KE168gag.M12	Kenya	2001	genomic RNA	peripartum	subtype: A1,D	1	231	6A,11I,15V,27I,54M,58I,71D,83L,87Q,111P,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KX302439	01KE168gag.M15	Kenya	2001	genomic RNA	peripartum	subtype: A1,D	1	231	6A,11I,15V,27I,54M,58I,71D,83L,87Q,111P,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KX302440	01KE168gag.M6	Kenya	2001	genomic RNA	peripartum	subtype: A1,D	1	231	6A,11I,15V,27I,31AG,54M,58I,71D,83L,87Q,111P,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KX302441	01KE168gag.M9	Kenya	2001	genomic RNA	peripartum	subtype: A1,D	1	231	6A,11I,15V,27I,31AG,54M,58I,71D,83L,87Q,111P,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KX302448	01KE170gag.M12	Kenya	2001	genomic RNA	in utero	subtype: A1	1	231	6A,14T,15L,27I,54L,58I,71D,83L,92P,110N,111I,115V,120S,128D,131R,148V,169F,178T,180D,191IV,199R,200S,203R,207A,208G
KX302449	01KE170gag.M9	Kenya	2001	genomic RNA	in utero	subtype: A1	1	231	6A,14T,15L,27I,54L,58I,71D,83L,92P,110N,111I,115V,120S,128D,131R,148V,169F,178T,180D,200S,203R,207A,208G
KX302454	01KE211gag.M12	Kenya	2001	genomic RNA	peripartum	subtype: CRF10,C	1	231	6L,27I,41T,50A,59IV,71D,83L,87HPQ,91V,96L,116A,120H,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
KX302455	01KE211gag.M15	Kenya	2001	genomic RNA	peripartum	subtype: CRF10,C	1	231	6L,27I,41T,50T,71D,83LV,87HPQ,91V,96L,116A,120H,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
KX302456	01KE211gag.M6	Kenya	2001	genomic RNA	peripartum	subtype: CRF10,C	1	231	6L,27I,41T,50G,59I,71D,83L,87Q,91V,96L,116A,120H,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
KX302457	01KE211gag.M9	Kenya	2001	genomic RNA	peripartum	subtype: CRF10,C	1	231	6L,27I,41T,50G,59I,71D,83L,91V,96L,116A,120H,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
KX302466	01KE231gag.M1	Kenya	2001	genomic RNA	peripartum	subtype: A1,D	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,183G,200S,203R,208G
KX302467	01KE231gag.M3	Kenya	2001	genomic RNA	peripartum	subtype: A1,D	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,120S,121T,128D,148V,154K,169F,178T,183G,200S,203R,208G
KX302472	01KE258gag.M1	Kenya	2001	genomic RNA	in utero	subtype: A1	1	231	6A,14S,15L,27I,54M,58I,71D,83L,92P,111P,116Q,120S,128D,148V,154K,169F,178T,183G,191I,200S,203R,207A,208G,210S,225S
KX302473	01KE258gag.M3	Kenya	2001	genomic RNA	in utero	subtype: A1	1	231	6A,14S,15L,27I,54M,58I,71D,83L,92P,111P,116Q,120S,128D,148V,154K,169F,178T,183G,191I,200S,203R,207A,208G,210S,225S
KX302474	01KE258gag.M6	Kenya	2001	genomic RNA	in utero	subtype: A1	1	231	6A,14S,15L,27I,54M,58I,71D,83L,92P,111P,116Q,120S,128D,148V,154K,169F,178T,183G,191I,200S,203R,207A,208G,210S,225S
KX302478	01KE259gag.M1	Kenya	2001	genomic RNA	peripartum	subtype: A1	1	231	6A,11I,15L,27I,30R,54M,58I,71D,83L,91P,96L,111P,120G,128D,148V,154K,169F,180D,183G,187D,191I,203R,204G,207A,208G
KX302482	01KE261gag.M1	Kenya	2001	genomic RNA	peripartum	subtype: A1,C	1	231	6A,11T,15L,27I,54M,58I,71D,91V,111I,115V,116A,120S,148V,169F,171V,178T,180D,207S,208G
KX302483	01KE261gag.M3	Kenya	2001	genomic RNA	peripartum	subtype: A1,C	1	231	6A,11T,15L,27I,54M,58I,71D,91V,111I,115V,116A,120S,148V,169F,171V,178T,180D,207S,208G
KX302484	01KE261gag.M6	Kenya	2001	genomic RNA	peripartum	subtype: A1,C	1	231	6A,11T,15L,27I,54M,58I,71D,91V,111I,115V,116A,120S,148V,169F,171V,178T,180D,207S,208G
KX302489	01KE281gag.M1	Kenya	2001	genomic RNA	peripartum	subtype: A1	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,91A,92P,111M,120S,128D,148V,154K,169F,171A,178T,183G,200S,203R,207A,208G
KX302490	01KE281gag.M3	Kenya	2001	genomic RNA	peripartum	subtype: A1	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,91A,92P,111M,120S,128D,148V,154K,169F,171A,178T,183G,200S,203R,207A,208G
KX302491	01KE281gag.M6	Kenya	2001	genomic RNA	peripartum	subtype: A1	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,91A,92P,111M,120S,128D,148V,154K,169F,171A,178T,183G,200S,203R,207A,208G
KX302497	01KE291gag.M1	Kenya	2001	genomic RNA	peripartum	subtype: A1	1	231	6A,11I,14N,15L,27I,41LS,54M,58I,71D,83L,92P,111P,116A,120G,124V,128D,148V,154K,169F,178T,183G,200S,203R,207A,208G,225S,230I
KX302498	01KE291gag.M3	Kenya	2001	genomic RNA	peripartum	subtype: A1	1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,92P,111P,116A,120G,124V,128D,148V,154K,169F,178T,183G,200S,203R,207A,208G,225S,230I
KX302503	01KE313gag.M1	Kenya	2001	genomic RNA	in utero	subtype: A1,CRF10	1	231	6A,10P,15V,27I,54M,58I,71D,83L,92P,111T,120G,128D,131R,148V,154K,169F,178T,180D,191I,200S,203R,207T,208G
KX302504	01KE313gag.M3	Kenya	2001	genomic RNA	in utero	subtype: A1,CRF10	1	231	6A,10P,15V,27I,54M,58I,71D,83L,92P,111T,120G,128D,131R,148V,154K,169F,178T,180D,191I,200S,203R,207T,208G
KX302507	01KE334gag.M1	Kenya	2001	genomic RNA	peripartum	subtype: A1	1	231	6A,27I,41T,54M,58I,71D,83L,92P,111P,116A,120G,123A,128D,148V,153V,154K,169F,171I,178T,183G,200S,203R,208G,225S,230I
KX302509	02KE231gag.M15	Kenya	2002	genomic RNA	peripartum	subtype: A1,D	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,120S,121T,128D,148V,154K,169F,178T,183G,200S,203R,208G
KX302512	02KE258gag.M12	Kenya	2002	genomic RNA	in utero	subtype: A1	1	231	6A,14S,15L,27I,54M,58I,71D,83L,92P,111P,116Q,120S,128D,148V,154K,169F,178T,183G,191I,200S,203R,207A,208G,210S,225S
KX302514	02KE259gag.M12	Kenya	2002	genomic RNA	peripartum	subtype: A1	1	231	6A,11I,15L,27I,30R,54M,58I,71D,83L,91P,96L,111P,120G,128D,148V,154K,169F,180D,183G,187D,191I,203R,204G,207A,208G
KX302515	02KE259gag.M15	Kenya	2002	genomic RNA	peripartum	subtype: A1	1	231	6A,11I,15LV,27I,30R,54M,58I,71D,83L,91P,96L,111P,120G,128D,148V,154K,169F,180D,183G,187D,191I,203R,204G,207A,208G
KX302520	02KE261gag.M15	Kenya	2002	genomic RNA	peripartum	subtype: A1,C	1	231	6A,11T,15L,27I,54M,58I,71D,83AT,91V,111I,115V,116A,120S,148V,169F,171V,178T,180D,207S,208G
KX302521	02KE261gag.M9	Kenya	2002	genomic RNA	peripartum	subtype: A1,C	1	231	6A,11T,15L,27I,54M,58I,71D,91V,111I,115V,116A,120S,148V,169F,171V,178T,180D,207S,208G
KX302526	02KE281gag.M9	Kenya	2002	genomic RNA	peripartum	subtype: A1	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,91A,92P,111M,120S,128D,148V,154K,169F,171A,178T,183G,200S,203R,207A,208G
KX302529	02KE291gag.M12	Kenya	2002	genomic RNA	peripartum	subtype: A1	1	231	6A,11I,14NS,15L,27I,54M,58I,71D,83L,92P,111P,116A,120G,124V,128D,148V,154K,169F,178T,183G,200S,203R,204G,207A,208G,225S,230I
KX302530	02KE291gag.M15	Kenya	2002	genomic RNA	peripartum	subtype: A1	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,116A,120G,124V,128D,148V,154K,169F,178T,183G,203R,204G,207A,208G,225S,230I
KX302531	02KE291gag.M6	Kenya	2002	genomic RNA	peripartum	subtype: A1	1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,92P,111P,116A,120G,124V,128D,148V,154K,169F,178T,183G,200S,203R,204AG,207A,208G,225S,230I
KX302532	02KE291gag.M9	Kenya	2002	genomic RNA	peripartum	subtype: A1	1	231	6A,11I,14NS,15L,27I,54M,58I,71D,83L,92P,111P,116A,120G,124V,128D,148V,154K,169F,178T,183G,200S,203R,204G,207A,208G,225S,230I
KX302542	02KE313gag.M6	Kenya	2002	genomic RNA	in utero	subtype: A1,CRF10	1	231	6A,10P,15V,27I,54M,58I,71D,83L,92P,111T,120G,128D,131R,148V,154K,169F,178T,180D,191I,200S,203R,207T,208G
KX302543	02KE313gag.M9	Kenya	2002	genomic RNA	in utero	subtype: A1,CRF10	1	231	6A,10P,15V,27I,54M,58I,71D,83L,87HP,92P,111T,120G,128D,131R,148V,154K,169F,171AT,178T,180D,191I,200S,203R,207T,208G
KX302545	02KE334gag.M3	Kenya	2002	genomic RNA	peripartum	subtype: A1	1	231	6A,11A,27I,41T,54M,58I,71D,83L,92P,111P,116A,120G,123A,128D,148V,153V,154K,169F,171I,178T,183G,200S,203R,208G,225S,230I
KX302546	02KE334gag.M6	Kenya	2002	genomic RNA	peripartum	subtype: A1	1	231	6A,12Y,15M,27I,41T,54M,58I,71D,83L,92P,111P,116A,120G,123A,128D,148V,153V,154K,169F,171I,178T,183G,200S,203R,208G,225S,230I
KX302547	02KE334gag.M9	Kenya	2002	genomic RNA	peripartum	subtype: A1	1	231	6A,12Y,15M,27I,41T,54M,58I,71D,83L,92P,111P,116A,120G,123A,128D,148V,153V,154K,169F,171I,178T,183G,200S,203R,208G,225S,230I
KX302551	02KE411gag.M1	Kenya	2002	genomic RNA	peripartum	subtype: A1	1	231	6A,15V,27I,54M,58I,71D,83L,92P,111P,120G,128D,148V,154K,169F,178T,187D,200S,203R,208G,225S
KX302552	02KE411gag.M3	Kenya	2002	genomic RNA	peripartum	subtype: A1	1	231	6A,15V,27I,54M,58I,71D,83L,92P,111P,120G,128D,148V,154K,169F,178T,187D,200S,203R,208G,225S
KX302553	02KE411gag.M6	Kenya	2002	genomic RNA	peripartum	subtype: A1	1	231	6A,15V,27I,54M,58I,71D,83L,92P,111P,120G,128D,148V,154K,169F,178T,187D,200S,203R,208G,225S
KX302554	02KE411gag.M9	Kenya	2002	genomic RNA	peripartum	subtype: A1	1	231	6A,15V,27I,35Q,54M,58I,71D,83L,92P,111P,120G,128D,148V,154K,169F,178T,187D,200S,203R,208G,225S
KX302563	02KE424gag.M1	Kenya	2002	genomic RNA	in utero	subtype: A1,A2,D	1	231	6A,41T,71D,110S,116A,120S,148V,169F,178T,187D,200S,203R,208G
KX302564	02KE424gag.M2.5	Kenya	2002	genomic RNA	in utero	subtype: A1,A2,D	1	231	6A,41T,71D,110S,116A,120S,148V,169F,178T,187D,200S,203R,208G
KX302565	02KE424gag.M6	Kenya	2002	genomic RNA	in utero	subtype: A1,A2,D	1	231	6A,41T,71D,110S,116A,120S,148V,169F,178T,187D,200S,203R,208G
KX302569	02KE440gag.M1	Kenya	2002	genomic RNA	in utero	subtype: A1	1	231	6A,14N,15L,27I,58I,71D,83L,92P,111P,115L,116Q,120S,128D,148V,154K,169F,171A,178T,183G,200S,208G,210S,225S
KX302570	02KE440gag.M6	Kenya	2002	genomic RNA	in utero	subtype: A1	1	231	6A,14N,15L,27I,58I,71D,83L,92P,111P,115L,116Q,120S,128D,148V,154K,169F,171A,178T,183G,200S,208G,210S,225S
KX302571	02KE440gag.NEO	Kenya	2002	genomic RNA	in utero	subtype: A1	1	231	6A,14N,15L,27I,58I,71D,83L,92P,111P,115L,116Q,120S,128D,148V,154K,169F,171A,178T,183G,200S,208G,210S,225S
KX302574	02KE454gag.M1	Kenya	2002	genomic RNA	peripartum	subtype: CFR21,A2	1	231	6A,10W,33N,83L,116A,120S,148V,187D,199R,200S,208G
KX302575	02KE454gag.M3	Kenya	2002	genomic RNA	peripartum	subtype: CFR21,A2	1	231	6A,10W,33N,83L,116A,120S,148V,187D,199R,200S,208G
KX302580	02KE485gag.M3	Kenya	2002	genomic RNA	in utero	subtype: A1	1	231	6A,15V,27I,54M,58I,71D,83L,92P,111P,120GS,128D,148V,154K,169F,183G,187D,190M,191I,200S,203R,208G,225S
KX302581	02KE485gag.NEO	Kenya	2002	genomic RNA	in utero	subtype: A1	1	231	6A,15V,27I,54M,58I,71D,83L,92P,111P,120G,128D,148V,154K,169F,183G,187D,190M,191I,200S,203R,208G,225S
KX302584	03KE440gag.M9	Kenya	2003	genomic RNA	in utero	subtype: A1	1	231	6A,14N,15L,27I,58I,71D,83L,92P,111P,115L,116Q,120S,128D,148V,154K,169F,171A,178T,183G,200S,208G,210S,225S
KX302586	03KE454gag.M15	Kenya	2003	genomic RNA	peripartum	subtype: CFR21,A2	1	231	6A,10W,33N,83L,116A,120S,148V,187D,199R,200S,208G
KX302587	03KE454gag.M6	Kenya	2003	genomic RNA	peripartum	subtype: CFR21,A2	1	231	6A,10W,33N,83L,116A,120S,148V,187D,199R,200S,208G
KX302592	03KE485gag.M6	Kenya	2003	genomic RNA	in utero	subtype: A1	1	231	6A,15V,27I,54M,58I,71D,83L,92P,111P,120GS,128D,148V,154K,169F,183G,187D,190M,191I,200S,203R,208G,225S
KX302593	03KE485gag.M9	Kenya	2003	genomic RNA	in utero	subtype: A1	1	231	6A,15V,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,183G,187D,190M,191I,200S,203R,208G,225S

Genbank References: capsid (p24)

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