<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Kelleher (2016) Positive selection of each of the clustered compensatory mutations in HIV-1 gag required for escape from HLA-B27 restricted CTL response J Exp Med. 2001 Feb 5;193(3):375-86 1.46e-173 169 75 Naive PBMC Molecular clones HLA;Acute infection

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AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
AY13496311504-10USA: San Franciscogenomic DNA123183L,136M,200S
AY13496411504-11USA: San Franciscogenomic DNA123115V,33G,46R,83L,88V,136M,154G,230I
AY13496711504-14USA: San Franciscogenomic DNA123183L,136M,144T
AY13495711504-3USA: San Franciscogenomic DNA123183L,136M
AY13495811504-5USA: San Franciscogenomic DNA123139V,83L,136M
AY13495911504-6USA: San Franciscogenomic DNA123183L,136M
AY13496011504-7USA: San Franciscogenomic DNA123119A,74S,83L,136M
AY13496211504-9USA: San Franciscogenomic DNA123183L,136M
AY13491013499-1USA: San Franciscogenomic DNA12316L,83L,132G,225S
AY13491813499-10USA: San Franciscogenomic DNA12316L,24A,83L,91V,99S,116V,120D,132K,136M,140R
AY13491913499-11USA: San Franciscogenomic DNA12316L,83L,91V,116V,132K,136M,149C
AY13492013499-12USA: San Franciscogenomic DNA12316L,39V,83L,132G,160A,225S
AY13492113499-13USA: San Franciscogenomic DNA12316L,24A,83L,91V,99S,116V,120D,132K,136M,140R
AY13492213499-14USA: San Franciscogenomic DNA12316L,27I,83L,91V,116V,120S,123S,132K,136M,221M
AY13492313499-15USA: San Franciscogenomic DNA12316L,35G,57T,58P,79D,83L,120S,136M
AY13492413499-16USA: San Franciscogenomic DNA12316L,83L,132G,206R,225S,228T
AY13491113499-2USA: San Franciscogenomic DNA12316L,27I,83L,91V,116V,120S,123S,132K,136M
AY13491213499-3USA: San Franciscogenomic DNA12316L,27I,77AV,83L,91V,116V,120S,123S,132K,136M,221M
AY13491313499-4USA: San Franciscogenomic DNA12314R,6L,83L,98G,132G,225S
AY13491413499-5USA: San Franciscogenomic DNA12316L,83L,132G,144T,187V,225S
AY13491513499-7USA: San Franciscogenomic DNA12314R,6L,83L,132G,225S
AY13491613499-8USA: San Franciscogenomic DNA12314R,6L,83L,132G,225S
AY13491713499-9USA: San Franciscogenomic DNA12316L,83L,91V,116V,132K,136M
AY13496814532-1USA: San Franciscogenomic DNA12316L,15L,16T,27I,83T,87Q,110N,116A,148V,165I,178T,194V,208R
AY13497514532-10USA: San Franciscogenomic DNA12316L,15L,16T,27I,30R,75V,83T,87Q,95R,96I,110N,116A,148V,178T,208G,225S
AY13497614532-13USA: San Franciscogenomic DNA12316L,15L,16T,27I,83T,87Q,110N,116A,148V,178T,208G,225S
AY13497714532-14USA: San Franciscogenomic DNA12316L,15L,16T,27I,83T,87Q,96I,103V,110N,116A,148V,178T,208G,225S
AY13497814532-15USA: San Franciscogenomic DNA12316L,15L,16T,23R,27I,83T,87Q,96I,110N,116A,148V,178T,203R,208G
AY13497914532-16USA: San Franciscogenomic DNA12316L,15L,16T,27I,68T,83T,87Q,95L,96I,110N,113K,116A,148V,178T,185V,208G,225S
AY13496914532-2USA: San Franciscogenomic DNA12316L,15L,16T,27I,83T,87Q,110N,116A,148V,165I,178T,194V,208R
AY13497014532-3USA: San Franciscogenomic DNA12316L,15L,16T,27I,48N,83T,87Q,96I,110N,116A,148V,153M,172P,178T,208G,225S
AY13497114532-6USA: San Franciscogenomic DNA12316L,15L,16T,27I,83T,87Q,110N,116A,148V,152G,178T,208G
AY13497214532-7USA: San Franciscogenomic DNA12316L,15L,16T,27I,83T,87Q,96I,110N,116A,148V,178T,208G,225S
AY13497314532-8USA: San Franciscogenomic DNA12316L,15L,16T,27I,83T,87Q,96I,110N,116A,148V,178T,208G,225S
AY13497414532-9USA: San Franciscogenomic DNA12316L,15L,16T,27I,83T,86M,87Q,96I,110N,116A,125S,148V,178T,208G,210A,225S
AY13492516842-1USA: San Franciscogenomic DNA123115L,83L,87Q,110N,136I,225A
AY13493416842-10USA: San Franciscogenomic DNA123115L,83L,87Q,110N,136I,225A
AY13493516842-11USA: San Franciscogenomic DNA123115L,83L,86M,87Q,110N,136I,225A
AY13493616842-12USA: San Franciscogenomic DNA12316L,12R,15L,83L,110N,153V
AY13493716842-13USA: San Franciscogenomic DNA12316L,15L,83L,110N
AY13493816842-14USA: San Franciscogenomic DNA12316L,12R,15L,75G,83L,110N,213G,230A
AY13493916842-15USA: San Franciscogenomic DNA123115L,83L,87Q,110N,136I,225A
AY13494016842-16USA: San Franciscogenomic DNA12314R,6L,15L,83L,93L,110N
AY13492616842-2USA: San Franciscogenomic DNA123115L,50R,83L,87Q,110N,136I,225A
AY13492716842-3USA: San Franciscogenomic DNA12316L,15L,83L,110N
AY13492816842-4USA: San Franciscogenomic DNA123115L,83L,87Q,110N,136I,225A
AY13492916842-5USA: San Franciscogenomic DNA123115L,83L,87Q,90L,110N,133R,136I,161L,225A
AY13493016842-6USA: San Franciscogenomic DNA12316L,15L,83L,110N
AY13493116842-7USA: San Franciscogenomic DNA123115L,83L,87Q,110N,136I,225A
AY13493216842-8USA: San Franciscogenomic DNA12316L,15L,83L,110N
AY13493316842-9USA: San Franciscogenomic DNA12316L,15L,83L,110N
AY13494117630-1USA: San Franciscogenomic DNA12316L,41A,83L,98D,120H,132K,136M,154K,183S,225S
AY13495017630-10USA: San Franciscogenomic DNA12316L,41A,80G,83L,98D,113D,120H,132K,136M,154K,183S,225S
AY13495117630-11USA: San Franciscogenomic DNA12316L,41A,83L,98D,113D,120H,132K,136M,183S,225S
AY13495217630-12USA: San Franciscogenomic DNA12316L,41V,83L,98D,120H,132K,136M,154K,183S,225S
AY13495317630-13USA: San Franciscogenomic DNA12316L,41A,83L,98D,120H,132K,136M,154K,183S,225S
AY13495417630-14USA: San Franciscogenomic DNA12316L,41A,83L,98D,120H,132K,136M,154K,183S,225S
AY13495517630-15USA: San Franciscogenomic DNA12316L,41A,83L,98D,113D,120H,132K,136M,154K,183S,214T,225S
AY13495617630-16USA: San Franciscogenomic DNA12316L,41A,83L,98D,113D,120H,132K,136M,154K,183S,225S
AY13494217630-2USA: San Franciscogenomic DNA12316L,41A,83L,98D,113D,120H,132K,136M,154K,183S,225S
AY13494317630-3USA: San Franciscogenomic DNA12316L,35K,41A,83L,98D,112R,113D,120H,132K,136M,154K,183S,225S
AY13494417630-4USA: San Franciscogenomic DNA12316L,41A,83L,98D,112R,113D,120H,132K,136M,154K,183S,225S
AY13494617630-6USA: San Franciscogenomic DNA12316L,24A,41A,75Q,83L,97*,98D,120H,132K,136M,154K,183S,195Y,222R,225S
AY13494717630-7USA: San Franciscogenomic DNA12316L,41A,83L,98D,113D,120H,132K,136M,154K,183S,225S
AY13494817630-8USA: San Franciscogenomic DNA12316L,41C,83L,98D,113D,120H,132K,136M,154K,183S,196Q,225S
AY13494917630-9USA: San Franciscogenomic DNA12316L,41A,83L,98D,120H,132K,136M,154K,183S,225S
AY13494517634-5USA: San Franciscogenomic DNA12316L,83L,98D,113D,120H,132K,136M,154K,183S,225S
AY13498418030-12USA: San Franciscogenomic DNA12316L,14P,21S,41A,58A,83L,104T,120H,193D
AY13498518030-13USA: San Franciscogenomic DNA12316L,14P,41A,74I,83L,98D,103A,132K,136M
AY13498618030-14USA: San Franciscogenomic DNA12316L,14P,41A,74I,83L,98D,103A,132K,136M,213G,229G
AY13498718030-15USA: San Franciscogenomic DNA12316L,14P,16P,41A,83L,132K,136M
AY13498018030-4USA: San Franciscogenomic DNA12316L,14P,41A,83L,87Q,91V,132K,136M,168C
AY13498118030-7USA: San Franciscogenomic DNA12316L,14P,41A,83M,124T,132K,136M,199E
AY13498218030-8USA: San Franciscogenomic DNA12316L,14P,41A,83M,132K,136M,170R
AY13498318030-9USA: San Franciscogenomic DNA12316L,14P,41A,80R,83L,87Q,91V,132K,136M
AF53271630306-1USAgenomic DNA12316L,41A,132K,136M
AF53272530306-10USAgenomic DNA12316L,41A,52P,62Y,91V,132K,136M,170E
AF53272730306-12USAgenomic DNA12316L,41A,91V,132K,136M,173G
AF53272830306-13USAgenomic DNA12316L,41A,132K,136M
AF53272930306-14USAgenomic DNA12316L,41A,91V,132K,136M
AF53273130306-16USAgenomic DNA12316L,41A,91V,132K,136M,144I,219R
AF53271730306-2USAgenomic DNA12316L,41A,91V,132K,136M
AF53271830306-3USAgenomic DNA12316L,21S,41A,91V,132K,136M
AF53271930306-4USAgenomic DNA12316L,12R,41A,91V,132K,136M
AF53272030306-5USAgenomic DNA12316L,41A,91V,132K,136M
AF53272130306-6USAgenomic DNA12316L,41A,56X,91V,132K,136M
AF53272330306-8USAgenomic DNA12316L,41A,132K,136M
AF53272430306-9USAgenomic DNA12316L,41A,132K,136M
AF538102777 10_95United Kingdom10genomic DNAPBMC of HLA-B27 postive patient12316L,83L,89GRW,131*EKQ,136M,159AEGV,180D,186S
AF538103777 10_95United Kingdom12genomic DNAPBMC of HLA-B27 postive patient12316L,83L,136M,159AEGV,180D
AF538104777 10_95United Kingdom3genomic DNAPBMC of HLA-B27 postive patient12316L,83L,136M,180D
AF538105777 10_95United Kingdom4genomic DNAPBMC of HLA-B27 postive patient12316L,37M,83L,128R,136M,180D,215T
AF538106777 10_95United Kingdom5genomic DNAPBMC of HLA-B27 postive patient12316L,76K,83L,136M,180D
AF538107777 10_95United Kingdom6genomic DNAPBMC of HLA-B27 postive patient12316L,19A,76K,83L,97K,136M,180D
AF538108777 10_95United Kingdom8genomic DNAPBMC of HLA-B27 postive patient12316L,83L,136M,180D
AF538109777 10_96United Kingdom2genomic DNAPBMC of HLA-B27 postive patient12316L,41A,83L,132K,136M,149N,180D,190S
AF538110777 10_96United Kingdom4genomic DNAPBMC of HLA-B27 postive patient12316L,41A,83L,132K,136M,149N,180D
AF538111777 10_96United Kingdom1genomic DNAPBMC of HLA-B27 postive patient12316L,41A,83L,98D,132K,136M,149N,159AEGV,180D
AF538112777 10_96United Kingdom5genomic DNAPBMC of HLA-B27 postive patient12316L,41A,83L,132K,136M,149N,180D
AF538113777 10_96United Kingdom7genomic DNAPBMC of HLA-B27 postive patient12316L,41A,83L,132K,136M,149N,180D
AF538114777 10_96United Kingdom8genomic DNAPBMC of HLA-B27 postive patient12316L,41A,83L,132K,136M,149N,180D,187K,206E
AF538115777 10_96United Kingdom10genomic DNAPBMC of HLA-B27 postive patient12316L,41A,83L,130C,132K,136M,149N,180D,187K,206E
AF538126O25 8-96United Kingdom4genomic DNAPBMC of HLA-B27 postive patient12316L,15L,41A,68I,83L,91A,120S,123A,132K,136M,170R,180D,208G
AF538127O25 8-96United Kingdom2genomic DNAPBMC of HLA-B27 postive patient12316L,15L,41A,68I,83L,91V,132K,136M,168L,170R,180D,208G
AF538128O25 8-96United Kingdom3genomic DNAPBMC of HLA-B27 postive patient12316L,15L,41A,68I,83L,91V,98D,122S,132K,136M
AF538129O25 8-96United Kingdom5genomic DNAPBMC of HLA-B27 postive patient12316L,15L,41T,68I,83L,91A,98D,120S,123A,132K,136M,170R,180D,189LMV,208G
AF538130O25 8-96United Kingdom6genomic DNAPBMC of HLA-B27 postive patient12316L,15L,41A,68I,83L,91A,120S,123A,132K,136M,170R,180D,208G
AF538131O25 8-96United Kingdom9genomic DNAPBMC of HLA-B27 postive patient12316L,15L,23C,41A,68I,83L,91V,132K,136M
AF538132O25 8-96United Kingdom10genomic DNAPBMC of HLA-B27 postive patient12316L,15L,41A,68I,72A,83L,91A,120S,123A,132K,136M,170R,180D,208G
AF538084OO7 10_95United Kingdom14genomic DNAPBMC of HLA-B27 postive patient12316L,41A,45G,83L,120H,136M,141V,143K,179P,183T,191I,208G
AF538085OO7 10_95United Kingdom16genomic DNAPBMC of HLA-B27 postive patient123183L,136M,208G
AF538086OO7 10_95United Kingdom17genomic DNAPBMC of HLA-B27 postive patient12316M,41A,83L,120H,130H,132K,136M,179P,183T,191I,194V,216A
AF538087OO7 10_95United Kingdom18genomic DNAPBMC of HLA-B27 postive patient12316L,41A,83L,120H,132K,136M,178T,216S
AF538088OO7 10_95United Kingdom19genomic DNAPBMC of HLA-B27 postive patient12316M,41A,76G,83L,120H,132K,136M,179P,183T,191I,208G,230I
AF538089OO7 10_95United Kingdom20genomic DNAPBMC of HLA-B27 postive patient12316L,41A,83L,120H,132K,136M,173G,179P,183T,191I,208G
AF538090OO7 10_95United Kingdom11genomic DNAPBMC of HLA-B27 postive patient12316M,41A,83L,120H,132K,136M,150T,208G
AF538091OO7 10_95United Kingdom12genomic DNAPBMC of HLA-B27 postive patient12316L,27I,41A,83L,85S,120H,132K,136M,208G
AF538075OO7 10-95United Kingdom1genomic DNAPBMC of HLA-B27 postive patient12316L,27I,83L,136M,157L,178T,199R,216S
AF538076OO7 10-95United Kingdom2genomic DNAPBMC of HLA-B27 postive patient12316M,41A,83L,120H,132K,136M,178T
AF538077OO7 10-95United Kingdom3genomic DNAPBMC of HLA-B27 postive patient12316M,32L,41A,51N,83L,120H,132K,136M,178T
AF538078OO7 10-95United Kingdom4genomic DNAPBMC of HLA-B27 postive patient12316L,41A,83L,120H,132K,136M,178T,208G
AF538079OO7 10-95United Kingdom6genomic DNAPBMC of HLA-B27 postive patient12316L,41A,83L,120H,132K,136M,178T,199R
AF538080OO7 10-95United Kingdom7genomic DNAPBMC of HLA-B27 postive patient12316L,41A,83L,136M,178T,199R,208G
AF538081OO7 10-95United Kingdom8genomic DNAPBMC of HLA-B27 postive patient12316L,41A,83L,120H,132K,136M,208G
AF538082OO7 10-95United Kingdom9genomic DNAPBMC of HLA-B27 postive patient12316L,41A,83L,120H,132K,136M,157L,178T,199R,216S
AF538083OO7 10-95United Kingdom10genomic DNAPBMC of HLA-B27 postive patient12316M,41A,83L,120H,132K,136M,178T,218R
AF538092OO7 8_96United Kingdom1genomic DNAPBMC of HLA-B27 postive patient12316M,41A,83L,120H,132K,136M,177C,178T,191I,202P,208G,216S
AF538093OO7 8_96United Kingdom2genomic DNAPBMC of HLA-B27 postive patient12316L,30E,41A,83L,120H,132K,136M,178T
AF538094OO7 8_96United Kingdom3genomic DNAPBMC of HLA-B27 postive patient12316L,27I,41A,83L,120H,132K,136M,178T
AF538095OO7 8_96United Kingdom4genomic DNAPBMC of HLA-B27 postive patient12316L,27I,41A,83L,120H,132K,136M,177C,178T
AF538096OO7 8_96United Kingdom5genomic DNAPBMC of HLA-B27 postive patient12316L,41A,75G,83L,120H,132K,136M,141M,177C,178T
AF538097OO7 8_96United Kingdom6genomic DNAPBMC of HLA-B27 postive patient12316M,41A,83L,120H,132K,136M,153M,177C,178T,191I,208G,216S
AF538098OO7 8_96United Kingdom7genomic DNAPBMC of HLA-B27 postive patient12316L,41A,75G,83L,120H,132K,136M,141M,177C,178T
AF538099OO7 8_96United Kingdom8genomic DNAPBMC of HLA-B27 postive patient12316L,27I,41A,83L,120H,132K,136M,177C,178T,229G
AF538100OO7 8_96United Kingdom10genomic DNAPBMC of HLA-B27 postive patient12316L,27I,41A,83L,120H,132K,136M,148I,177C,178T
AF538101OO7 8_96United Kingdom9genomic DNAPBMC of HLA-B27 postive patient12316L,7R,27I,41A,83L,120H,132K,136M,148I,177C,178T,216S
AF538069OO7 9-94United Kingdom11genomic DNAPBMC of HLA-B27 postive patient123173T,83L,136M,141V,148I,178T
AF538070OO7 9-94United Kingdom12genomic DNAPBMC of HLA-B27 postive patient123183L,135L,136M,141V,148I,178T,179P,180D,199R
AF538071OO7 9-94United Kingdom13genomic DNAPBMC of HLA-B27 postive patient123132S,83L,136M,188A
AF538072OO7 9-94United Kingdom4genomic DNAPBMC of HLA-B27 postive patient123183L,136M,195S
AF538073OO7 9-94United Kingdom5genomic DNAPBMC of HLA-B27 postive patient123183L,136M,148I,178T,179P,180D,199R
AF538074OO7 9-94United Kingdom6genomic DNAPBMC of HLA-B27 postive patient12316F,83L,91V,136M
AF538143RT 10_97United Kingdom10genomic DNAPBMC of HLA-B27 postive patient12314R,6L,83L,116A,128D,132G,208G,210S
AF538144RT 10_97United Kingdom11genomic DNAPBMC of HLA-B27 postive patient12314R,6L,83L,102G,112L,116A,128D,132G,208G
AF538145RT 10_97United Kingdom12genomic DNAPBMC of HLA-B27 postive patient12314R,6L,73V,83L,112L,116A,128D,132G,208G
AF538146RT 10_97United Kingdom13genomic DNAPBMC of HLA-B27 postive patient12314R,6L,83L,116A,128D,132G,208G
AF538147RT 10_97United Kingdom16genomic DNAPBMC of HLA-B27 postive patient12314R,6L,83L,116A,128D,132G,208G
AF538148RT 10_97United Kingdom6genomic DNAPBMC of HLA-B27 postive patient12314R,6L,83L,84R,116A,128D,132G,208G
AF538149RT 10_97United Kingdom9genomic DNAPBMC of HLA-B27 postive patient12314R,6L,83L,112L,114P,116A,128D,132G,208G
AF538133RT 10-96United Kingdom10genomic DNAPBMC of HLA-B27 postive patient1231
AF538134RT 10-96United Kingdom11genomic DNAPBMC of HLA-B27 postive patient1231
AF538135RT 10-96United Kingdom12genomic DNAPBMC of HLA-B27 postive patient12316L,83L,136M
AF538136RT 10-96United Kingdom2genomic DNAPBMC of HLA-B27 postive patient1231
AF538137RT 10-96United Kingdom3genomic DNAPBMC of HLA-B27 postive patient123118G
AF538138RT 10-96United Kingdom4genomic DNAPBMC of HLA-B27 postive patient1231
AF538139RT 10-96United Kingdom6genomic DNAPBMC of HLA-B27 postive patient1231
AF538140RT 10-96United Kingdom7genomic DNAPBMC of HLA-B27 postive patient1231
AF538141RT 10-96United Kingdom8genomic DNAPBMC of HLA-B27 postive patient1231
AF538142RT 10-96United Kingdom9genomic DNAPBMC of HLA-B27 postive patient1231154*
AF538116SW 7_98United Kingdom2genomic DNAPBMC of HLA-B27 postive patient123141A,120H,132K,136M,148A,183T,225S
AF538117SW 7_98United Kingdom3genomic DNAPBMC of HLA-B27 postive patient123141A,105V,120H,132K,136M,148A,183T,225S
AF538118SW 7_98United Kingdom4genomic DNAPBMC of HLA-B27 postive patient12316L,41A,120H,132K,136M,148A,225S
AF538119SW 7_98United Kingdom5genomic DNAPBMC of HLA-B27 postive patient123111E,41A,101R,120H,132K,136M,148A,225S
AF538120SW 7_98United Kingdom7genomic DNAPBMC of HLA-B27 postive patient123141A,111P,120H,132K,136M,148A,183T,225S
AF538121SW 7_98United Kingdom8genomic DNAPBMC of HLA-B27 postive patient123141A,120H,132K,136M,148A,225S
AF538122SW 7_98United Kingdom9genomic DNAPBMC of HLA-B27 postive patient12316L,41A,116A,132K,136M,148A,225S
AF538123SW 7_98United Kingdom10genomic DNAPBMC of HLA-B27 postive patient123141A,120H,132K,136M,148A,183T,225S
AF538124SW 7_98United Kingdom11genomic DNAPBMC of HLA-B27 postive patient123119A,41A,120H,132K,136M,148A,155H,225S
AF538125SW 7_98United Kingdom12genomic DNAPBMC of HLA-B27 postive patient12316L,41A,120H,132K,136M,148A,225S

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