Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Banin (2019)	Development of a Versatile, Near Full Genome Amplification and Sequencing Approach for a Broad Variety of HIV-1 Group M Variants	Viruses 11 (4), E317 (2019)	1.33e-153	21

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Accession	IsolateName	Country	Coll Date	MolType	Source	Note	FirstAA	LastAA	MutList
MK086117	BDHS24_2	Cameroon	15-Oct-2009	genomic RNA	CM-NYU-cohort	reverse transcribed viral RNA from human plasma;subtype: U_02AG/F2	1	231	6L,11M,14N,27I,41T,71D,83L,86A,87Q,91H,92P,93A,116A,120S,124V,148V,154K,169F,177G,178T,180D,187D,203R,208G,210S,230I
MK086118	BDHS33	Cameroon	15-Oct-2009	genomic RNA	CM-NYU-cohort	reverse transcribed viral RNA from human plasma;subtype: U_02AG/F2	1	231	6A,14S,15M,27I,54M,58I,71D,83T,116A,123S,128D,148V,169F,171V,178T,187D,200S
MK086130	LB002_1	Cameroon	28-Jan-2010	genomic RNA	CM-NYU-cohort	reverse transcribed viral RNA from human plasma;subtype: F2	1	231	6L,14N,50G,58S,71D,83L,87Q,92P,96I,116T,120S,124V,128D,143K,148V,154K,159R,169F,178T,180D,187D,208G,210N,213D
MK086109	LB016_1	Cameroon	28-Jan-2010	genomic RNA	CM-NYU-cohort	reverse transcribed viral RNA from human plasma;subtype: U_02AG/A1	1	231	6A,11T,14S,27I,54M,58I,71D,83T,91V,148V,169F,178T,200G,207T,208G,225S
MK086131	LB022_1	Cameroon	28-Jan-2010	genomic RNA	CM-NYU-cohort	reverse transcribed viral RNA from human plasma;subtype: F2	1	231	6L,27I,71D,92P,116A,120S,124V,128D,148V,154K,169F,171I,178T,187D,225S,230I
MK086110	LB069_1	Cameroon	13-May-2010	genomic RNA	CM-NYU-cohort	reverse transcribed viral RNA from human plasma;subtype: U_2201A1/F2	1	231	6L,15L,27I,41T,71D,83L,91N,92P,93A,116A,120S,148V,154K,169F,183G,187D,190M,191I,208G,210S
MK086112	LB089_1	Cameroon	22-Jul-2010	genomic RNA	CM-NYU-cohort	reverse transcribed viral RNA from human plasma;subtype: U_02AG/F2	1	231	6L,15L,27I,41T,54M,58I,71D,83I,91N,96I,116A,120S,148V,169F,178T,200S,203R,208G
MK086114	LB104_1	Cameroon	28-Oct-2010	genomic RNA	CM-NYU-cohort	reverse transcribed viral RNA from human plasma;subtype: U_02AG/F2/2201A1	1	231	6L,14S,27I,54M,58I,71D,83T,91V,144T,148V,169F,178T,200G,207T,208G,225S
MK086115	MDC131_3	Cameroon	30-Jun-2011	genomic RNA	CM-NYU-cohort	reverse transcribed viral RNA from human plasma;subtype: U_02AG/F2	1	231	6A,11T,14S,27I,54M,58I,71D,83T,91V,148V,169F,178T,200G,207T,208G,225S
MK086116	MDC179_2	Cameroon	22-Jun-2012	genomic RNA	CM-NYU-cohort	reverse transcribed viral RNA from human plasma;subtype: U_02AG/F2	1	231	6A,11T,14S,27I,54M,58I,71D,83T,91V,97G,112*,148V,169F,178T,200G,207T,208G,225S
MK086122	NYU1122_1	Cameroon	13-Nov-2008	genomic RNA	CM-NYU-cohort	reverse transcribed viral RNA from human plasma;subtype: U_02AG/A1	1	231	6A,11T,14S,27I,54M,58I,71D,83T,91V,148V,169F,178T,200G,207T,208G,225S
MK086119	NYU119_3	Cameroon	03-Jul-2002	genomic RNA	CM-NYU-cohort	reverse transcribed viral RNA from human plasma;subtype: U_02AG/F2	1	231	6A,11T,14S,15M,27I,41T,54M,58I,71D,75D,83I,91N,96I,116A,120S,148V,169F,178T,200S,203R,208G
MK086120	NYU124_2	Cameroon	29-Mar-2002	genomic RNA	CM-NYU-cohort	reverse transcribed viral RNA from human plasma;subtype: U_02AG/F2	1	231	6L,15L,54S,58A,71D,83L,87Q,92P,96I,110S,116A,120S,124V,148V,154K,160S,169F,178T,183G,187D,208G
MK086121	NYU129_5	Cameroon	07-Jun-2002	genomic RNA	CM-NYU-cohort	reverse transcribed viral RNA from human plasma;subtype: U_02AG/F2	1	231	6A,14S,26A,27I,41T,54M,58I,71D,83I,86A,87Q,96I,116A,120G,128D,148V,169F,178T,200S,203R,208G
MK086123	NYU1999	Cameroon	02-Jan-2000	genomic RNA	CM-NYU-cohort	reverse transcribed viral RNA from human plasma;subtype: U_02AG/F2	1	231	6A,11T,14S,27I,54M,58I,71D,83T,91V,148V,169F,178T,200G,207T,208G,225S
MK086124	NYU2140_1	Cameroon	20-Feb-2001	genomic RNA	CM-NYU-cohort	reverse transcribed viral RNA from human plasma;subtype: U_02AG/F2	1	231	6A,11T,14S,27I,54M,58I,71D,83T,91V,148V,169F,178T,186I,200G,207T,208G,225S
MK086126	NYU6541_6_bulk	Cameroon	11-Jan-2011	genomic RNA	CM-NYU-cohort	reverse transcribed viral RNA from human plasma;subtype: U_02AG/F2	1	231	6L,15L,27I,71D,87Q,92P,96I,116T,148V,169F,178T,208G
MK086128	NYU6541_6_clone	Cameroon	23-Feb-2011	genomic RNA	CM-NYU-cohort	reverse transcribed viral RNA from human plasma;subtype: U_02AG/F2	1	231	6L,15L,27I,71D,87Q,92P,96I,116T,148V,169F,178T,208G
MK086127	NYU6541_6_SGA	Cameroon	23-Feb-2011	genomic RNA	CM-NYU-cohort	reverse transcribed viral RNA from human plasma;subtype: U_02AG/F2	1	231	6L,15L,27I,71D,87Q,92P,96I,116T,148V,169F,183G,207T,208G
MK086125	NYU6556_3	Cameroon	23-Feb-2011	genomic RNA	CM-NYU-cohort	reverse transcribed viral RNA from human plasma;subtype: U_02AG/G	1	231	6A,11T,14S,15M,27I,54M,58I,71D,79D,120S,148V,169F,178T,200S,203R,208G,217S,225S
MK086129	Strain0526	Germany	01-Aug-2017	genomic RNA	X4-in-vitro-cultures	reverse transcribed viral RNA from lab adaptedinfectious viral stock;subtype: B	1	231	6L,83L,120H,208G

Genbank References: capsid (p24)

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