<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Neogi (2017) Recent increased identification and transmission of HIV-1 unique recombinant forms in Sweden Sci Rep 7 (1), 6371 (2017) 5.29e-154 83 148 ART Plasma Direct PCR; NGS Molecular epidemiology

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AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
MF373124001UGSweden1993genomic DNAsubtype: A112316A,11I,14S,15L,27I,31G,48A,54M,58I,71D,83L,91V,96L,111T,116A,120A,128D,148V,154K,169F,177C,178T,183G,200S,203R,207T,208G
MF373125003SESweden2003genomic DNAsubtype: B12316L,14P,87Q,91V,120H,178T,208G,210N
MF373126004ZMSweden2003genomic DNAsubtype: C12316L,14P,15L,27I,41T,71D,83L,110N,116A,120S,128D,148V,154K,169F,170R,180D,187D,203R,208G,225S
MF373127005SESweden2003genomic DNAsubtype: B12313K,4L,5H,6R,9E,13L,15P,17T,18L,19N,20V,21W,25I,26E,27K,28K,29D,30F,33N,35K,36P,41T,83L,86P,87Q,91V,98D,120S,124V,148V,154K,171V,180D
MF373128006CDSweden2004genomic DNAsubtype: C12316A,14S,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,173K,178T,180D,187D,191I,203R,207A,208G
MF373129007SESweden2005genomic DNAsubtype: B12316H,27I,83L,87Q,91V,110S,120H,148V,180D
MF373130008SESweden2005genomic DNAsubtype: B12316L,15L,27I,83L,86I,91V,148V,154K,178T
MF373131010BISweden2005genomic DNAsubtype: C12316L,15L,27I,41T,71D,83I,86S,87Q,91V,96I,98D,116Q,120S,148V,154K,169F,180D,187D,203R,208G,225S
MF373132011BISweden2005genomic DNAsubtype: C12316L,14N,27I,41T,71D,83L,87Q,91V,96I,98D,116T,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
MF373133012BISweden2005genomic DNAsubtype: C12316L,14N,27I,41T,71D,83L,87Q,91V,96I,98D,116T,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
MF373134013ETSweden2006genomic DNAsubtype: C12316S,27I,41T,71D,83L,91V,96L,110N,116A,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MF373135014ETSweden2006genomic DNAsubtype: C12316L,14S,27I,36I,41T,71D,83M,91V,116A,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
MF373136016SESweden2006genomic DNAsubtype: C12316L,15L,27I,36I,41T,71D,83L,91A,116A,120G,124V,128D,129L,148V,154K,169F,178T,180D,187D,203R,208G,225S
MF373137017BISweden2006genomic DNAsubtype: C12316L,14S,15L,27I,36I,41T,71D,83L,87Q,91V,110N,116A,120S,128D,148V,154K,169F,178T,183G,187D,207S,208G
MF373138018SESweden2006genomic DNAsubtype: C12316L,14P,41T,52I,71D,83L,87Q,91V,96I,116T,120S,128D,132K,148V,154K,163E,169F,178A,180D,187D,208G
MF373139019KESweden2006genomic DNAsubtype: C12316L,14P,27I,41T,71D,72A,83I,116A,120S,124V,148V,154K,169F,178T,180D,187D,203R,208G,225S
MF373140023SESweden2007genomic DNAsubtype: B12316H,27I,83L,87Q,91V,96L,110S,116A,120H,148V,180D
MF373141026KESweden2008genomic DNAsubtype: A1C12316A,27I,41T,71D,83L,87Q,91V,98D,116A,120H,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MF373142028SESweden2008genomic DNAsubtype: B12316L,15L,83L,91N,92P,120H,194S,208Q,225S
MF373143029SESweden2008genomic DNAsubtype: C12316L,14P,27I,36I,71D,75D,83L,86A,91V,96I,116A,120A,124V,128N,132G,154K,169F,178T,187D,200N,203R,208G,210S,225S
MF373144030SESweden2009genomic DNAsubtype: B12316L,27I,83M,86Q,87Q,91V,96I,116T,120S,124V,148V,178T,179V
MF373145031ERSweden2009genomic DNAsubtype: C12316L,41T,54S,58A,71D,91N,116A,120S,128D,148V,154K,169F,178T,180D,187N,197N,198G,208G,212K,220E,222E,229E,230L
MF373146033ETSweden2009genomic DNAsubtype: C12316L,14P,15L,31G,33N,41T,71D,83L,91V,98D,110N,116A,120S,128D,135V,148V,154K,169F,178T,180D,187D,203R,208G,210S,212K,225S
MF373147034SESweden2009genomic DNAsubtype: 01_AE12316A,15L,31G,33N,45D,54M,58I,92P,120S,148V,178T,200S,207T,208G,225S
MF373148035ZASweden2009genomic DNAsubtype: C12316L,14S,27I,41T,71D,83L,116T,120S,124V,128D,148V,154K,169F,173K,178T,180D,187D,200N,203R,208G,225S
MF373149038USSweden2010genomic DNAsubtype: B12316L,15L,41T,83L,87Q,91V,148S,154K,194S,200N,208G,225S
MF373150039KZSweden2010genomic DNAsubtype: 63_02A112316A,14S,15M,27I,41T,54M,58I,71D,83L,86A,87Q,91F,92P,120S,128D,148V,162K,169F,178T,180D,200S,203R,208G,210N,225S
MF373151040CASweden2010genomic DNAsubtype: B12316L,27I,83L,87Q,91H,92P,116A,148A,154K,170R,183S,187D,207S,208G
MF373152041SESweden2010genomic DNAsubtype: C12316L,14P,27I,41T,52I,71D,83L,86A,87Q,91V,95H,98D,116A,120G,124V,128D,132K,148V,154K,169F,178T,180D,187D,203R,208G,225S
MF373153042SESweden2010genomic DNAsubtype: A1D12316V,11M,14P,15L,26A,27I,30R,31G,54M,58I,71D,83L,87Q,111I,120S,128D,148V,154K,169F,171A,178T,180D,187D,200S,207T,208G
MF373154043SESweden2010genomic DNAsubtype: C12316L,15M,27I,41T,71D,83L,91V,115V,116A,120G,124V,148V,154K,169F,178T,180D,187D,203R
MF373155052SESweden2011genomic DNAsubtype: A1C12316L,14N,15L,27I,41T,44A,50H,71D,83T,87Q,91V,116A,120S,124V,128D,148V,154K,169F,171V,178T,180D,187D,200N,203R,208G
MF373156053SESweden2011genomic DNAsubtype: C12316L,27I,41T,71D,83L,91A,116A,120G,124V,128D,148V,169F,178T,180D,187D,203R,208G,210S
MF373157054ETSweden2011genomic DNAsubtype: C123114P,27I,41T,71D,83L,91A,96P,116T,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MF373158055ERSweden2011genomic DNAsubtype: C12316L,15L,27I,41T,71D,75D,83L,91V,98D,116A,120S,128D,148V,154K,169F,177S,187D,203R,208G,210S
MF373159056ITSweden2011genomic DNAsubtype: C12316L,10S,15L,27I,41T,68I,71D,91V,116A,120G,128D,148V,154K,169F,171V,177G,178T,200S,203R,208G,210S,225S
MF373160057SESweden2011genomic DNAsubtype: 01_AE12316A,14P,15V,31G,33N,54M,58I,79D,92P,120S,128D,148V,162K,178T,200S,207T,208G,225S
MF373161058SESweden2011genomic DNAsubtype: B12316L,14P,27I,83L,86A,87Q,91V,96L,120S,123A,148V
MF373162059SESweden2011genomic DNAsubtype: B12316L,15L,27I,41T,83L,86P,87Q,91V,96I,110N,116T,120S,124V,148V,154K,183H,191I,194S,208G
MF373163060SESweden2011genomic DNAsubtype: A1C12313L,6A,11A,12Y,14S,15L,27I,41T,71D,83L,91V,116A,120G,124V,148V,152E,169F,178T,180D,187D,203R,208G,210S,225S
MF373164061SOSweden2011genomic DNAsubtype: C12316L,14S,15L,27I,33N,36I,41T,71D,83L,91V,115V,116A,120S,128D,132K,136I,148V,154K,169F,178T,180D,187D,203R,208G
MF373165062ZASweden2011genomic DNAsubtype: C12312V,6L,14N,15L,27I,41T,50S,71D,83L,116Q,120S,128D,148V,169F,178T,191I,207G,208G
MF373166063BISweden2011genomic DNAsubtype: C12316V,14P,27I,36I,41T,71D,83L,86A,87Q,91V,92Q,96L,98D,110N,116A,120H,124V,128D,148V,154K,169F,178T,180D,203R,208G,225S
MF373167064GRSweden2012genomic DNAsubtype: A112316A,14N,15L,27I,54V,58I,71D,83L,92P,96L,111P,115L,116Q,120G,121T,128D,154K,160S,169F,171A,178T,183G,187D,200S,207T,208G,225S
MF373168065SESweden2012genomic DNAsubtype: A112316A,11I,14S,15L,27I,48I,54M,58I,71D,83L,91V,96L,107S,111P,118I,120G,128D,148V,154K,169F,171A,178T,180D,200S,203R,204S,207A,208G
MF373169066SESweden2012genomic DNAsubtype: C123115L,41T,71D,83L,91V,120S,128D,136I,148V,169F,178T,180D,203R
MF373170067SESweden2012genomic DNAsubtype: C12316L,14N,27I,41T,71D,83L,115V,116A,120A,124V,128D,148V,169F,178T,180D,187D,203R,208G,210S
MF373171068SESweden2012genomic DNAsubtype: C12316L,14N,27I,41T,71D,83L,91V,96I,115V,116T,120S,124V,128D,148V,169F,178T,180D,187D,203R,208G,210S
MF373172069SESweden2012genomic DNAsubtype: 01_AE12316T,14P,15L,31G,33N,54M,58I,92P,120S,123V,148V,178T,200S,207Q,208G,225S
MF373173070SESweden2012genomic DNAsubtype: 01_AE12316A,14P,15V,31G,33N,41T,54M,58I,87Q,92P,96I,120S,135V,148V,178T,200S,207T,208G
MF373174071EGSweden2012genomic DNAsubtype: B12316L,7H,13H,14P,18T,21Y,33I,35Q,83L,107S,120S,180D
MF373175072SOSweden2012genomic DNAsubtype: C12316L,15L,27I,41T,71D,83L,116N,120S,148V,154K,169F,178T,180D,187D,203R,208G,225S
MF373176073NPSweden2012genomic DNAsubtype: C12312L,6L,27I,41T,71D,83L,96I,116A,148V,169F,178T,187D,203R,208G,225S
MF373177074SESweden2012genomic DNAsubtype: C12316L,14P,27I,41T,71D,83L,86A,87Q,91V,96I,110S,116Q,120S,128D,148V,169F,178T,180D,187D,203R,208G,210S,225S
MF373178075ZASweden2012genomic DNAsubtype: C12316L,14P,27I,41T,71D,72V,83L,91V,116A,118I,120G,148V,169F,171V,178T,180D,203R
MF373179076SOSweden2012genomic DNAsubtype: C12316L,7R,14P,15L,27I,36I,41T,71D,75D,79D,83L,91V,110N,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
MF373180077UGSweden2012genomic DNAsubtype: D12316L,27I,83L,87Q,91V,120A,123S,148V,180D,225S
MF373181078SESweden2013genomic DNAsubtype: A112316A,14T,15L,27I,54M,58I,71D,83L,111P,116A,120G,123A,128D,148V,154K,169F,178T,180D,191I,200S,203R,207G,208G
MF373182079KESweden2013genomic DNAsubtype: A112316A,14N,15L,27I,54M,58I,83L,92P,111P,120S,128D,148V,154K,169F,171V,178T,180D,200S,203R,208G
MF373183081ERSweden2013genomic DNAsubtype: CD12313L,4H,5D,6A,7R,9L,13P,14S,15L,18T,19I,21D,22G,24I,25E,27I,30D,31V,41T,68I,71D,83L,96I,116T,120S,124V,128D,132Q,136I,148V,154K,169F,177G,180D,187D,203R,208G
MF373184082SOSweden2013genomic DNAsubtype: C12316L,14P,27I,41T,71D,83L,86A,87Q,91V,96I,98D,110S,116Q,120S,128D,148V,169F,178T,180D,187D,203R,208G,210S,225S
MF373185083ETSweden2013genomic DNAsubtype: B12314R,15M,83L,86A,91V,96I,116D,120G,136M,138F,148V,180D,208G,210S
MF373186084THSweden2013genomic DNAsubtype: B12316L,15L,41T,83L,91V,136M,180D,194S,208G
MF373187085BISweden2013genomic DNAsubtype: C12316L,14P,15M,17A,27I,41T,71D,87Q,91V,98D,116A,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
MF373188086SESweden2013genomic DNAsubtype: CF112316L,10H,14P,15L,17A,41T,71D,83L,86A,91V,116Q,120S,124V,154K,169F,178T,180D,187D,200I,203R,204G,207S,208G,225S,230I
MF373189087SESweden2013genomic DNAsubtype: CB12316L,14P,27I,41T,71D,83L,91A,116A,120G,124V,128D,148V,169F,178T,187D,203R,208G,225S
MF373190088SESweden2013genomic DNAsubtype: A1D12316V,11M,14P,15L,26A,27I,30R,31G,54M,58I,71D,79D,83L,87Q,111I,120S,124V,128D,148V,154K,169F,171A,178T,180D,187D,200S,203R,207S,208G
MF373191089SESweden2013genomic DNAsubtype: B12316L,83L,91A,107S,120S,136M,225S,230I
MF373192090ETSweden2013genomic DNAsubtype: C12316L,14S,15L,31G,33N,41T,71D,75D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,203R,208G,225S
MF373193091SESweden2014genomic DNAsubtype: C12316L,15L,27I,41T,71D,79D,83T,91V,96L,110N,116A,120A,124V,148V,169F,178T,180D,203R
MF373194092SESweden2014genomic DNAsubtype: A1C12316L,14P,15L,27I,31N,41T,59I,71D,83L,116A,120S,128D,148V,154K,169F,178T,180D,187D,191I,203R,208G
MF373195093ERSweden2014genomic DNAsubtype: A1C123114P,15L,27I,41T,71D,83L,91V,107S,110S,116A,120S,124V,128D,148V,154K,169F,178T,187D,203R,208G
MF373196094SESweden2014genomic DNAsubtype: A1D12316V,11M,14P,15L,26A,27I,30R,31G,54M,58I,71D,83L,87Q,91V,111T,120S,128D,148V,154K,169F,171A,178T,180D,187D,200S,207T,208G
MF373197095CDSweden2014genomic DNAsubtype: C12316L,14T,27I,41T,71D,83I,116A,120S,124V,135V,148V,154K,169F,177S,178T,187D,197N,198G,207W,208G,212K,220E
MF373198096SESweden2014genomic DNAsubtype: C12316L,15L,27I,41T,71D,83L,91A,120S,148V,154K,169F,171V,178T,180D,194S,210S
MF373199097SOSweden2014genomic DNAsubtype: C12316L,14P,15L,41T,54S,58A,71D,83L,116A,120G,121A,122Q,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
MF373200098GNSweden2014genomic DNAsubtype: 02_AG12314H,6A,7H,8R,14V,15L,18K,20F,22V,24M,25Q,27L,28X,29X,30N,44A,45D,54V,58I,71D,83I,92P,120S,124V,148V,169F,178T
MF373201099USSweden2014genomic DNAsubtype: B12316L,15L,41T,83L,86A,87Q,96I,116T,136M,180D,208G,219H,224S
MF373202100ETSweden2015genomic DNAsubtype: C12316P,11I,27I,41T,71D,83L,91V,116N,120S,148V,154K,169F,178T,180D,187D,203R,208G
MF373203101SESweden2015genomic DNAsubtype: B12316L,14P,83L,180D
MF373204102SESweden2015genomic DNAsubtype: B12316L,14P,83L,180D,225S,230I
MF373205103MKSweden2015genomic DNAsubtype: BF112312V,4A,6L,11I,12Y,14S,27I,44A,71D,83L,86A,87Q,91F,92P,116Q,120S,124V,148A,169F,178T,194S,208G,230I
MF373206104CMSweden2016genomic DNAsubtype: 11_cpx12316A,12Y,14G,15V,27I,54M,58I,71D,83L,86A,87Q,91F,92P,96L,98D,111P,115V,120G,128D,131R,148V,152E,169F,180D,191I,203R,208G

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