<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Tully (2016) Differences in the Selection Bottleneck between Modes of Sexual Transmission Influence the Genetic Composition of the HIV-1 Founder Virus PLoS Pathog. 12 (5), E1005619 (2016) 6.35e-155 73 73 Naive Plasma SGS; NGS Acute infection

Download sequences

AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
KT1247411006_08USA1997genomic RNAsubtype: B12316L,83L,154K,180D
KT1247421012_09USA1997genomic RNAsubtype: B12316L,15L,148I,160S
KT1247431018_10USA1997genomic RNAsubtype: B12316L,16T,83L,120S,136M,148V,180D
KT1247441051_11USA1997genomic RNAsubtype: B12316M,14P,15L,27I,83M,148V,178T
KT1247451053_06USA1997genomic RNAsubtype: B12316L,27I,45D,54S,83M,87Q,91V,96L,116A,120H,148V,180D,225S,230I
KT124747119534USA1998genomic RNAsubtype: B12316L,15L,41T,91V,194S,208G,213D
KT124748135466USA2001genomic RNAsubtype: B12316L,27I,83L,87Q,91N,92P,116A,148V,178T
KT124749136172Germany2009genomic RNAsubtype: B12316L,27I,83I,86I,120S,148V,171V,180D
KT124750143200USA2012genomic RNAsubtype: B12316L,15L,27I,41T,71D,83L,87Q,96I,98D,116A,148V,154K,180D,194S,208G
KT124751147984Germany2008genomic RNAsubtype: B12316M,41T,83L,200H
KT124752154162Germany2008genomic RNAsubtype: B12316L,83L,136M
KT124753159793Germany2009genomic RNAsubtype: B12316M,15L,83L,91V,116A,154K,170R,194S
KT124754172508Germany2009genomic RNAsubtype: B12316L,14P,44A,83L
KT124755176952Germany2008genomic RNAsubtype: B12316L,83L,110N,116T,120S,154K,178T,225S
KT124756231603USA2012genomic RNAsubtype: B12316L,75D,83L,87Q,91V,96L,116A,120H,170R,177C,188S,207Q,208G,225S
KT124757255524Germany2008genomic RNAsubtype: B12316L,14P,116A,128D,180D,225S
KT124758268977USA2004genomic RNAsubtype: B12316L,15L,83L,87Q,91V,136M,194S,208G
KT124759284160USA1999genomic RNAsubtype: B12316M,116Q,120S
KT124760290307Germany2010genomic RNAsubtype: B12316L,14P,41T,83M,120S,180D
KT124761293050USA2008genomic RNAsubtype: B12316L,83L,180D,225S,230I
KT124762296004Germany2008genomic RNAsubtype: B12316L,83L,120H,148I,180D,191T,199R,208G,225S,230I
KT124763320435Germany2010genomic RNAsubtype: B12316L,14S,15L,83L,136M,194S,208G
KT124764328659USA2002genomic RNAsubtype: B12316L,14P,16T,31N,41T,59I,83T,91V,120S,171V,180D,208G,210S
KT124765328893Germany2012genomic RNAsubtype: B12316L,27I,41T,71D,83L,91A,120S,154K,180D,225S
KT124766361974USA2011genomic RNAsubtype: B12316L,83L,136M,208G,216S
KT124767366396Germany2013genomic RNAsubtype: B12316L,15L,27I,83L,91V,116T,120S,136M,148V,149G,208G
KT124768383086USA2012genomic RNAsubtype: B12316L,9N,14P,15M,27I,41V,71D,83M,110N,120S,124V,135V,154K,178T,191I,225S
KT124769394242USA1998genomic RNAsubtype: B12316L,14P,83M,91V,120S,171V,180D,230I
KT124770395718USA1997genomic RNAsubtype: B12316L,14P,41T,83L,116A,128D,148S,154K,180D,194S,225S
KT124771433768USA1998genomic RNAsubtype: B12316L,225S
KT124772464704Germany2010genomic RNAsubtype: B12316L,27I,83L,148V
KT124773479693USA2011genomic RNAsubtype: B12316L,15L,27I,41T,83L,91V,116A,120S,123A,136M,194S,208G,210S,225T,230I
KT124774481216USA2008genomic RNAsubtype: B12316L,11I,44A,50G,54L,58A,79D,83Q,87Q,91V,96I,116A,120A,180D,208G
KT124775481811USA2011genomic RNAsubtype: B12316L,14S,15L,27I,83L,148V,180D
KT124776489910USA1999genomic RNAsubtype: B12316L,15L,27I,41T,83L,120H,128D,136M,146C,148V,154K,225S
KT124777494131USA2002genomic RNAsubtype: B12316L,83L,91N,120H,154K,178T
KT124778509452USA2005genomic RNAsubtype: B12316L,14P,27I,41T,71D,79D,83L,120S,148S,180D,225S
KT124779556743Germany2010genomic RNAsubtype: B12316L,83L,178T
KT124780571373Germany2010genomic RNAsubtype: B12316L,15L,27I,83L,120H,148V,154K,178T
KT124781574194USA2003genomic RNAsubtype: B12316L,14P,41T,83L,87Q,91V,120S,180D,199R
KT124782585067Germany2009genomic RNAsubtype: B12316L,9A,87A,91V,96L,116A,120H,124V,183H
KT124783587196Germany2010genomic RNAsubtype: B12314R,6L,41T,83L,96I,116A,132G,135V,154K,160S,225S
KT124784607523USA2012genomic RNAsubtype: B12316L,41T,83L,91V,120G,123A,180D,203R,208G
KT124785608647USA2012genomic RNAsubtype: B12316L,27I,83L,91N,110N,116A,120S,148V,180D,225S,230I
KT124786622166Germany2010genomic RNAsubtype: C12316H,27I,41T,50A,71D,83L,91V,96L,116A,118T,120A,135V,148V,154K,169F,171C,178T,187D,203R,204G,207T,208G
KT124787635056Germany2012genomic RNAsubtype: B12316L,27I,83L,86P,87Q,91Y,92P,96I,116T,120S,144V,148I,154K,178T
KT124788637829Germany2008genomic RNAsubtype: B12316L,14P,15L,41T,83M,91A,120S,154K,180D,194S
KT124789654207Germany2008genomic RNAsubtype: B12316L,91V,148S,180D,225A
KT124790678584USA2012genomic RNAsubtype: B12316L,14P,15L,41T,83L,87Q,91V,96I,98D,116A,180D,208G,210S,225S
KT124791689801USA2006genomic RNAsubtype: B12316V,10P,15L,83L,87Q,91V,96L,116A,120H,136I,143K,148I
KT124792701114Germany2009genomic RNAsubtype: CRF02_AG12316A,15V,27I,54M,58I,71D,83M,110N,120S,148V,154K,165I,169F,178T,200S,208G
KT124793702865USA2008genomic RNAsubtype: B12316L,83L,86P,87Q,91H,92P,96L
KT124794822582Germany2008genomic RNAsubtype: B12316M,27I,41T,83L,86Q,87Q,96I,116T,148V,178T,208G
KT124795848017USA2002genomic RNAsubtype: B12316L,83L,107S,120S
KT124796862898USA2013genomic RNAsubtype: B123115L,27I,41T,50S,83L,86P,87Q,96I,110S,116T,120S,128D,148V,154K,180D
KT124797863847Germany2010genomic RNAsubtype: B12316L,15L,27I,83L,91V,110N,116A,148I,208G
KT124798868558USA1999genomic RNAsubtype: B12316L,14P,41A,83L,87Q,91V,98D,132K,136M,154K,183S,216S,225S
KT124799880955USA2001genomic RNAsubtype: B12316L,27I,83L,148V,180D
KT124800882283Germany2008genomic RNAsubtype: B12316L,83L,120H,194S,208G
KT124801891439USA2007genomic RNAsubtype: B12316L,44A,83L,154K,178T
KT124802891676Germany2011genomic RNAsubtype: B12316L,27I,83L,116A,128D,136M,148V,171V,180D,225S
KT124803906153Germany2007genomic RNAsubtype: B12316L,83L,120T,154K,180D,205M,208G
KT124804912218Germany2004genomic RNAsubtype: B12316L,15L,83L,116A,148V,180D
KT124805923040Germany2009genomic RNAsubtype: B12316L,15L,41T,79D,83L,107S,120S,136I,154K
KT124806929172USA2000genomic RNAsubtype: B12316L,16A,41A,83L,116A,128D,132K,136I,148A,154K
KT124807933384USA2003genomic RNAsubtype: B12316L,14P,15M,16T,44A,68I,79D,83L,154K,180D
KT124808947915Germany2013genomic RNAsubtype: B12316L,75D,83L,154K,178T,216S
KT124809950965USA2011genomic RNAsubtype: B12316M,16P,41A,68I,83L,87Q,91V,120H,132K,136M,141V,194S,208G,216S
KT124810954229Germany2008genomic RNAsubtype: B12316V,11I,14P,41T,83T,87Q,91V,96L,116A,120H,148V,154K,180D
KT124811956306Germany2012genomic RNAsubtype: B123114N,15M,27I,83L,87Q,91V,96I,116A,120H,180D,207T,208G
KT124812963987Germany2004genomic RNAsubtype: B12316L,14S,44A,71D,83L,115V,120S,180D,210S
KT124813981600USA2003genomic RNAsubtype: B12316L,14P,15L,79D,83L,154K
KT124814996401USA2002genomic RNAsubtype: B123127I,83L,86P,87Q,96I,116T,136M,148V

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