Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Song (2013)	Analysis of recombinant viral genomes in individuals infected with multiple transmitted/founder HIV-1 strains	Unpublished	6.52e-151	160					Unpublished

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Accession	IsolateName	Country	Coll Date	MolType	Note	FirstAA	LastAA	MutList
KC148607	CH0010.s.gp1	Malawi	18-Dec-2006	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148608	CH0010.s.gp10	Malawi	18-Dec-2006	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148609	CH0010.s.gp2	Malawi	18-Dec-2006	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148610	CH0010.s.gp3	Malawi	18-Dec-2006	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148611	CH0010.s.gp4	Malawi	18-Dec-2006	genomic DNA	subtype: C	1	231	1L,6A,14S,27I,41T,71D,83L,91V,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148612	CH0010.s.gp5	Malawi	18-Dec-2006	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148613	CH0010.s.gp6	Malawi	18-Dec-2006	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148614	CH0010.s.gp7	Malawi	18-Dec-2006	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148615	CH0010.s.gp8	Malawi	18-Dec-2006	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148616	CH0010.s.gp9	Malawi	18-Dec-2006	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148617	CH0010.w1.gp10	Malawi	04-Jan-2007	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116A,120S,128D,148V,154K,161L,169F,178T,180D,187D,203R,208G
KC148618	CH0010.w1.gp2	Malawi	04-Jan-2007	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148619	CH0010.w1.gp3	Malawi	04-Jan-2007	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148620	CH0010.w1.gp4	Malawi	04-Jan-2007	genomic DNA	subtype: C	1	231	6A,14S,15IKRT,27I,41T,71D,83L,91V,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148621	CH0010.w1.gp5	Malawi	04-Jan-2007	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148622	CH0010.w1.gp6	Malawi	04-Jan-2007	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148623	CH0010.w1.gp7	Malawi	04-Jan-2007	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148624	CH0010.w1.gp8	Malawi	04-Jan-2007	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148625	CH0010.w24.gp1	Malawi	15-Jun-2007	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148626	CH0010.w24.gp10	Malawi	15-Jun-2007	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116T,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148627	CH0010.w24.gp11	Malawi	15-Jun-2007	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148628	CH0010.w24.gp12	Malawi	15-Jun-2007	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116T,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148629	CH0010.w24.gp13	Malawi	15-Jun-2007	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116T,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148630	CH0010.w24.gp2	Malawi	15-Jun-2007	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,57K,71D,83L,91V,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148631	CH0010.w24.gp3	Malawi	15-Jun-2007	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116T,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148632	CH0010.w24.gp5	Malawi	15-Jun-2007	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116T,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148633	CH0010.w24.gp6	Malawi	15-Jun-2007	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,52ILV,71D,83L,91V,115V,116APST,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148634	CH0010.w24.gp7	Malawi	15-Jun-2007	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116T,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148635	CH0010.w24.gp8	Malawi	15-Jun-2007	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116T,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KC148636	CH0010.w24.gp9	Malawi	15-Jun-2007	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,115V,116A,120S,128D,148V,154K,156V,169F,178T,180D,187D,203R,208G
KC148721	CH0047.s.wg16.5prime	Malawi	21-May-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,87P,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148722	CH0047.s.wg7.5prime	Malawi	21-May-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,87P,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148723	CH0047.w1.gp1	Malawi	15-Jun-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148736	CH0047.w2.gp1	Malawi	21-Jun-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,87P,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148737	CH0047.w2.gp3	Malawi	21-Jun-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,87P,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148738	CH0047.w2.gp5	Malawi	21-Jun-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,87P,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148724	CH0047.w24.gp1	Malawi	23-Nov-2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83L,87P,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148725	CH0047.w24.gp10	Malawi	23-Nov-2007	genomic DNA	subtype: C	1	231	6L,27I,41T,68I,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148726	CH0047.w24.gp11	Malawi	23-Nov-2007	genomic DNA	subtype: C	1	231	6L,27I,41T,68I,71D,83L,91V,111P,116A,120G,124V,128D,135V,144I,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148727	CH0047.w24.gp12	Malawi	23-Nov-2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148728	CH0047.w24.gp13	Malawi	23-Nov-2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83L,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148729	CH0047.w24.gp14	Malawi	23-Nov-2007	genomic DNA	subtype: C	1	231	6L,14H,27I,41T,71D,83L,87P,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148730	CH0047.w24.gp3	Malawi	23-Nov-2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148731	CH0047.w24.gp4	Malawi	23-Nov-2007	genomic DNA	subtype: C	1	231	6L,27I,41T,68I,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148733	CH0047.w24.gp6	Malawi	23-Nov-2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148734	CH0047.w24.gp7	Malawi	23-Nov-2007	genomic DNA	subtype: C	1	231	6L,13H,14P,27I,41T,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148735	CH0047.w24.gp9	Malawi	23-Nov-2007	genomic DNA	subtype: C	1	231	6L,14H,27I,41T,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148739	CH0047.w3.gp3	Malawi	29-Jun-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,87P,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148740	CH0047.w3.gp4	Malawi	29-Jun-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,87P,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148741	CH0047.w96.gp1	Malawi	09-Apr-2009	genomic DNA	subtype: C	1	231	6L,27I,41T,68I,71D,83L,111P,116A,120G,124V,128D,135V,148V,169F,178T,180D,187D,200N,203R,208G,225S
KC148742	CH0047.w96.gp10	Malawi	09-Apr-2009	genomic DNA	subtype: C	1	231	6L,15L,27I,41T,68I,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148743	CH0047.w96.gp11	Malawi	09-Apr-2009	genomic DNA	subtype: C	1	231	6L,27I,41T,68I,71D,83L,86I,91V,111P,116A,120G,124V,128D,135V,148V,169F,178T,180D,187D,200N,203R,208G,225S
KC148744	CH0047.w96.gp12	Malawi	09-Apr-2009	genomic DNA	subtype: C	1	231	6L,15L,27I,41T,68I,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148745	CH0047.w96.gp13	Malawi	09-Apr-2009	genomic DNA	subtype: C	1	231	6L,27I,41T,68I,71D,83L,86I,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148746	CH0047.w96.gp14	Malawi	09-Apr-2009	genomic DNA	subtype: C	1	231	6L,15L,27I,41T,68I,71D,83L,86I,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148747	CH0047.w96.gp15	Malawi	09-Apr-2009	genomic DNA	subtype: C	1	231	6L,27I,41T,68I,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,169F,178T,180D,187D,200N,203R,208G,225S
KC148748	CH0047.w96.gp16	Malawi	09-Apr-2009	genomic DNA	subtype: C	1	231	6L,27I,41T,68I,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,169F,178T,180D,187D,200N,203R,208G,225S
KC148749	CH0047.w96.gp2	Malawi	09-Apr-2009	genomic DNA	subtype: C	1	231	6L,27I,41T,68I,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,169F,178T,180D,187D,200N,203R,208G,225S
KC148750	CH0047.w96.gp3	Malawi	09-Apr-2009	genomic DNA	subtype: C	1	231	6L,27I,41T,68I,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,169F,178T,180D,187D,200N,203R,208G,225S
KC148751	CH0047.w96.gp4	Malawi	09-Apr-2009	genomic DNA	subtype: C	1	231	6L,27I,41T,68I,71D,83L,86I,91V,111P,116A,120G,124V,128D,135V,148V,169F,178T,180D,187D,200N,203R,208G,225S
KC148752	CH0047.w96.gp5	Malawi	09-Apr-2009	genomic DNA	subtype: C	1	231	6L,15L,27I,41T,68I,71D,83L,86I,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148753	CH0047.w96.gp6	Malawi	09-Apr-2009	genomic DNA	subtype: C	1	231	6L,27I,41T,68I,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148754	CH0047.w96.gp7	Malawi	09-Apr-2009	genomic DNA	subtype: C	1	231	6L,14H,27I,36I,41T,71D,83L,86I,91V,111P,116A,120G,124V,128D,135V,148V,169F,178T,180D,187D,200N,203R,208G,225S
KC148755	CH0047.w96.gp8	Malawi	09-Apr-2009	genomic DNA	subtype: C	1	231	6L,27I,41T,68I,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,169F,178T,180D,187D,200N,203R,208G,225S
KC148756	CH0047.w96.gp9	Malawi	09-Apr-2009	genomic DNA	subtype: C	1	231	6L,14H,27I,36I,41T,71D,83L,86I,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148757	CH0047a.s.gp10	Malawi	21-May-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148758	CH0047a.s.gp2	Malawi	21-May-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148759	CH0047a.s.gp4	Malawi	21-May-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148760	CH0047a.s.gp5	Malawi	21-May-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148761	CH0047a.s.gp7	Malawi	21-May-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148762	CH0047a.s.gp9	Malawi	21-May-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148764	CH0047a.s.wg1.5prime	Malawi	21-May-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148763	CH0047a.s.wg11.5prime	Malawi	21-May-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148765	CH0047a.s.wg9.5prime	Malawi	21-May-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148766	CH0047b.s.gp1	Malawi	21-May-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,87P,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148767	CH0047b.s.gp3	Malawi	21-May-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,87P,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148768	CH0047b.s.gp6	Malawi	21-May-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,87P,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148769	CH0047b.s.gp8	Malawi	21-May-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,87P,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148770	CH0047b.s.wg3.5prime	Malawi	21-May-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,87P,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148771	CH0047b.s.wg4.5prime	Malawi	21-May-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,87P,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148772	CH0047b.s.wg5.5prime	Malawi	21-May-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,87P,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148773	CH0047b.s.wg6.5prime	Malawi	21-May-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,87P,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC148774	CH0047b.s.wg8.5prime	Malawi	21-May-2007	genomic DNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,87P,91V,111P,116A,120G,124V,128D,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
KC149232	CH0200.s.wg10.5prime	Malawi	2007	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,111R,115V,116A,120G,128D,148V,154K,169F,177G,178T,180D,203R,208G,210S,225S
KC149233	CH0200.w60.gp1	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,203R,208G,210S,225S
KC149234	CH0200.w60.gp10	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,83L,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,203R,208G,210S,225S
KC149235	CH0200.w60.gp12	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,111R,115V,116A,120G,146CGRS,148V,154K,169F,177G,178T,180D,203R,208G,210S,225S
KC149236	CH0200.w60.gp14	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,183I,203R,208G,210S,225S
KC149237	CH0200.w60.gp15	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,203R,208G,210S,225S
KC149238	CH0200.w60.gp16	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,83L,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,203R,208G,210S,225S
KC149239	CH0200.w60.gp2	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,83L,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,203R,208G,210S,225S
KC149240	CH0200.w60.gp3	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,203R,208G,210S,225S
KC149241	CH0200.w60.gp4	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,83L,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,187K,203R,208G,210S,225S
KC149242	CH0200.w60.gp6	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,203R,208G,210S,225S
KC149243	CH0200.w60.gp9	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,83L,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,203R,208G,210S,225S
KC149244	CH0200.w96.gp1	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,203R,208G,210S,225S
KC149245	CH0200.w96.gp10	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,83L,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,203R,208G,225S
KC149246	CH0200.w96.gp11	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,83L,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,203R,208G,210S,225S
KC149247	CH0200.w96.gp12	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,83L,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,203R,208G,225S
KC149248	CH0200.w96.gp13	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,83L,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,203R,208G,210S,225S
KC149249	CH0200.w96.gp14	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,83L,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,203R,208G,210S,225S
KC149250	CH0200.w96.gp15	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,83L,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,185V,203R,208G,225S
KC149251	CH0200.w96.gp16	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,83L,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,203R,208G,210S,225S
KC149252	CH0200.w96.gp2	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,83L,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,203R,208G,210S,225S
KC149253	CH0200.w96.gp3	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,83L,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,203R,208G,225S
KC149254	CH0200.w96.gp4	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,83L,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,203R,208G,225S
KC149255	CH0200.w96.gp5	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,83L,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,203R,208G,225S
KC149256	CH0200.w96.gp6	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,83L,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,203R,208G,210S,225S
KC149257	CH0200.w96.gp7	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,83L,96IM,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,203R,208G,210S,225S
KC149258	CH0200.w96.gp8	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,83L,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,203R,208G,210S,225S
KC149259	CH0200.w96.gp9	Malawi	2008	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,50E,71D,75D,83L,111R,115V,116A,120G,148V,154K,169F,177G,178T,180D,203R,208G,210S,225S
KC149412	CH0228.w24.gp10	Malawi	25-Nov-2007	genomic DNA	subtype: C	1	231	6A,27I,41T,71D,79D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149413	CH0228.w24.gp13	Malawi	25-Nov-2007	genomic DNA	subtype: C	1	231	6A,27I,41T,71D,79D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149414	CH0228.w24.gp15	Malawi	25-Nov-2007	genomic DNA	subtype: C	1	231	6A,27I,41T,71D,79D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149415	CH0228.w24.gp16	Malawi	25-Nov-2007	genomic DNA	subtype: C	1	231	6A,27I,41T,71D,79D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149416	CH0228.w24.gp17	Malawi	25-Nov-2007	genomic DNA	subtype: C	1	231	6A,27I,41T,71D,79D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149417	CH0228.w24.gp18	Malawi	25-Nov-2007	genomic DNA	subtype: C	1	231	6A,27I,41T,71D,79D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149418	CH0228.w24.gp19	Malawi	25-Nov-2007	genomic DNA	subtype: C	1	231	6A,27I,41T,71D,79D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149419	CH0228.w24.gp20	Malawi	25-Nov-2007	genomic DNA	subtype: C	1	231	6A,27I,41T,71D,79D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149420	CH0228.w24.gp21	Malawi	25-Nov-2007	genomic DNA	subtype: C	1	231	6A,27I,41T,71D,79D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,203R,208G
KC149421	CH0228.w24.gp4	Malawi	25-Nov-2007	genomic DNA	subtype: C	1	231	6A,27I,41T,71D,79D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149422	CH0228.w24.gp5	Malawi	25-Nov-2007	genomic DNA	subtype: C	1	231	6A,27I,41T,71D,79D,83L,91V,95LPQR,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149423	CH0228.w24.gp6	Malawi	25-Nov-2007	genomic DNA	subtype: C	1	231	6A,27I,41T,71D,79D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,203R,208G
KC149424	CH0228.w24.gp7	Malawi	25-Nov-2007	genomic DNA	subtype: C	1	231	6A,27I,41T,71D,79D,83L,91V,116A,120R,128D,136M,148V,154K,169F,178T,180D,203R,208G
KC149425	CH0228.w24.gp8	Malawi	25-Nov-2007	genomic DNA	subtype: C	1	231	6A,27I,41T,71D,79D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149426	CH0228.w24.gp9	Malawi	25-Nov-2007	genomic DNA	subtype: C	1	231	6A,27I,41T,71D,79D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,203R,208G
KC149427	CH0228.w96.gp1	Malawi	19-Apr-2009	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149428	CH0228.w96.gp11	Malawi	19-Apr-2009	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149429	CH0228.w96.gp12	Malawi	19-Apr-2009	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149430	CH0228.w96.gp13	Malawi	19-Apr-2009	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149431	CH0228.w96.gp14	Malawi	19-Apr-2009	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149432	CH0228.w96.gp15	Malawi	19-Apr-2009	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149433	CH0228.w96.gp16	Malawi	19-Apr-2009	genomic DNA	subtype: C	1	231	6A,27I,41T,71D,79D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149434	CH0228.w96.gp2	Malawi	19-Apr-2009	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149435	CH0228.w96.gp3	Malawi	19-Apr-2009	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149436	CH0228.w96.gp4	Malawi	19-Apr-2009	genomic DNA	subtype: C	1	231	6A,27I,41T,71D,79D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149437	CH0228.w96.gp5	Malawi	19-Apr-2009	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149438	CH0228.w96.gp6	Malawi	19-Apr-2009	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,191I,203R,208G
KC149439	CH0228.w96.gp7	Malawi	19-Apr-2009	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,203R,208G
KC149440	CH0228.w96.gp8	Malawi	19-Apr-2009	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149441	CH0228.w96.gp9	Malawi	19-Apr-2009	genomic DNA	subtype: C	1	231	6A,14S,27I,41T,71D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KC149451	CH0275.s.gp10	Malawi	25-Oct-2007	genomic DNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC149452	CH0275.s.gp12	Malawi	25-Oct-2007	genomic DNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC149453	CH0275.s.gp14	Malawi	25-Oct-2007	genomic DNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC149454	CH0275.s.gp4	Malawi	25-Oct-2007	genomic DNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC149455	CH0275.s.gp5	Malawi	25-Oct-2007	genomic DNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC149456	CH0275.s.gp6	Malawi	25-Oct-2007	genomic DNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC149457	CH0275.s.gp7	Malawi	25-Oct-2007	genomic DNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC149458	CH0275.s.gp8	Malawi	25-Oct-2007	genomic DNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC149459	CH0275.s.gp9	Malawi	25-Oct-2007	genomic DNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC149460	CH0275.w24.gp11	Malawi	17-Apr-2008	genomic DNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC149461	CH0275.w24.gp13	Malawi	17-Apr-2008	genomic DNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC149462	CH0275.w24.gp14	Malawi	17-Apr-2008	genomic DNA	subtype: C	1	231	6L,14P,15L,27I,41T,48A,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC149463	CH0275.w24.gp15	Malawi	17-Apr-2008	genomic DNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC149464	CH0275.w24.gp16	Malawi	17-Apr-2008	genomic DNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC149465	CH0275.w24.gp17	Malawi	17-Apr-2008	genomic DNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC149466	CH0275.w24.gp4	Malawi	17-Apr-2008	genomic DNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC149467	CH0275.w24.gp6	Malawi	17-Apr-2008	genomic DNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC149468	CH0275.w24.gp7	Malawi	17-Apr-2008	genomic DNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KC149469	CH0275.w24.gp9	Malawi	17-Apr-2008	genomic DNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S

Genbank References: capsid (p24)

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