<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb
#PtsARTSourceCloningStudyType
Gounder (2016) Complex phylogeny of HIV-1 among drug users in Kenya AIDS Res Hum Retroviruses. 2017 May;33(5):500-510 8.06e-164 230 54 Naive Plasma Molecular clones; SGS Molecular epidemiology

Download sequences

AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
KU921861017_KGKenya1rgenomic RNA12316A,11I,14S,15V,27I,54M,58I,71D,83I,91V,111P,116A,120A,128D,148V,154K,169F,178T,183G,200S,203R,204G,206*,207T,208G,213Q
KU921862017_KGKenya2rgenomic RNA12316A,11I,14S,15V,27I,54M,58I,71D,83I,91V,111P,116A,120A,128D,148V,154K,169F,178T,183G,200S,203R,204G,207T,208G
KU921863017_KGKenya7rgenomic RNA12316A,11I,14S,15V,27I,54M,58I,71D,83I,91V,111P,116A,120A,128D,148V,154K,162L,166Y,169F,175D,176H,178T,183G,200S,203R,204G,207T,208G,209G,212Q,213Q
KU921864017_KGKenya8rgenomic RNA12316A,11I,14S,15V,27I,54M,58I,71D,83I,91V,111P,116A,120A,128D,141V,148V,154K,169F,178T,183G,200S,203R,204G,207T,208G
KU921865017_KGKenyaBgenomic RNA12316A,11I,14S,15V,27I,54M,58I,71D,83I,91V,111P,116A,120A,128D,148V,154K,169F,178T,183G,200S,203R,204G,207T,208G
KU921866023_KGKenya5genomic RNA12316A,10W,11A,14P,15V,26A,27I,54M,58I,71D,83L,87Q,92P,111S,116A,120G,148V,154K,169F,171A,178T,183G,200S,203R,207S,208G
KU921867023_KGKenya6genomic RNA12316A,10W,11A,14P,15V,26A,27I,54M,58I,71D,83L,87Q,92P,111S,116A,120G,148V,154K,169F,171A,178T,183G,200S,203R,207S,208G
KU921868024_KGKenya1genomic RNA12316A,11I,15V,27I,44A,45D,54S,58V,83L,86M,87Q,96I,98D,111V,115M,116T,120G,148V,180D,225S
KU921869024_KGKenya2genomic RNA12316A,11I,15V,27I,44A,45D,54S,58V,83L,86M,87Q,96I,98D,111V,115M,116T,120G,148V,180D,225S
KU921870024_KGKenya3genomic RNA12316A,11I,15V,27I,44A,45D,54S,58V,83L,86M,87Q,96I,98D,111I,115M,116T,120G,148V,180D,225S
KU921871024_KGKenya4genomic RNA12316A,11I,15V,27I,44A,45D,54S,58V,83L,86M,87Q,96I,98G,111I,115M,116T,120G,148V,180D,225S
KU921872066_KGKenya1genomic RNA12316A,11I,12L,14T,15L,27I,54M,58I,71D,83L,86M,87Q,92P,96I,111P,115L,116Q,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
KU921873066_KGKenya6genomic RNA12316A,11I,12L,14T,15L,27I,54M,58I,71D,83L,86M,87Q,92P,96I,111P,115L,116Q,120S,128D,148V,154K,169F,178T,179R,180D,200S,203R,207T,208G
KU921874088_KGKenya5rgenomic RNA12316M,27I,36I,41T,83L,87Q,91V,115V,116A,120S,128D,148V,180D,208G,225S
KU921875088_KGKenya7rgenomic RNA12316M,27I,36I,41T,83L,87Q,91V,115V,116A,120S,128D,148V,180D,208G,225S
KU921876088_KGKenya9rgenomic RNA12316M,27I,36I,41T,83L,91V,115V,116A,120S,128D,129V,148V,180D,208G,225S
KU921877088_KGKenya10rgenomic RNA12316M,27I,36I,41T,83L,91V,115V,116A,120S,128D,129V,148V,180D,208G,225S
KU921878088_KGKenya1genomic RNA12316M,27I,36I,41T,83L,87Q,91V,115V,116A,120S,128D,148V,180D,208G,225S
KU921879088_KGKenya2genomic RNA12316M,27I,36I,41T,83L,87Q,91V,115V,116A,120S,128D,148V,180D,208G,225S
KU921880088_KGKenya4genomic RNA12316M,27I,36I,41T,83L,91V,115V,116A,120S,128D,148V,180D,208G,225S
KU921881093_KGKenya1rgenomic RNA12316L,14P,27I,83L,87Q,91V,96I,98D,110N,116A,148V,180D,208Q,225S
KU921882093_KGKenya2rgenomic RNA12316L,14P,27I,83L,87Q,96I,110N,116A,148V,180D,208Q,225S
KU921883093_KGKenya3rgenomic RNA12316L,14P,27I,72A,83L,87Q,96I,110N,116A,148V,180D,208Q,225S
KU921885103_KGKenya1genomic RNA12312V,6V,11T,12Y,13H,14P,15M,27I,31G,33N,54M,58I,71D,83L,87Q,92P,111P,120H,128D,148V,169F,178T,183G,187D,203R,208G,210S
KU921886103_KGKenya2genomic RNA12312V,6V,11T,12Y,13H,14P,15M,27I,31G,33N,54M,58I,71D,83L,87Q,92P,111P,120H,128D,148V,154K,169F,178T,183G,187D,203R,208G,210S
KU921887103_KGKenya3genomic RNA12312V,6V,11T,12Y,13H,14P,15M,27I,31G,33N,54M,58I,71D,83L,87Q,92P,111P,120H,128D,148V,154K,169F,178T,183G,187D,203R,208G,210S
KU921888103_KGKenya4genomic RNA12316A,11I,12Y,14G,15M,27I,30R,31G,33N,54M,58I,71D,83L,87Q,92P,111P,120H,128D,148V,154K,169F,178T,183G,187D,203R,208G,210S
KU921889117_KGKenya1rgenomic RNA12316L,14P,27I,41T,79D,83L,91N,120S,148V,154K,171V,180D,199R,225S
KU921890117_KGKenya2rgenomic RNA12316L,14P,27I,41T,79D,83L,91A,120S,148V,154K,171V,180D,199R,225S
KU921891117_KGKenya3rgenomic RNA12316L,14P,27I,41T,79D,83L,91N,120S,148V,154K,171V,180D,199R,208S,225S
KU921892117_KGKenya4rgenomic RNA12316L,14P,27I,41T,79D,83L,91A,120S,148V,154K,171V,180D,199R,208S,225S
KU921893209_KGKenya1genomic RNA12316A,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G
KU921894209_KGKenya2genomic RNA12316A,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G
KU921895209_KGKenya3genomic RNA12316A,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G
KU921896209_KGKenya4genomic RNA12316A,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G
KU921897211_KGKenya1genomic RNA12316A,11I,14N,15L,27I,54M,58I,59I,68I,71D,79D,83L,92P,96I,111P,115L,116Q,120S,148V,154K,169F,171V,178T,180D,200S,207S,208G,225S
KU921898211_KGKenya2genomic RNA12316A,11I,14N,15L,27I,54M,58I,59I,68I,71D,79D,83L,92P,96I,111P,115L,116Q,120S,148V,154K,169F,171V,178T,180D,200S,207S,208G,225S
KU921899211_KGKenya3genomic RNA12316A,11I,14N,15L,27I,54M,58I,59I,68I,71D,79D,83L,92P,96I,111P,115L,116Q,120S,148V,154K,169F,171V,178T,180D,200S,207S,208G,225S
KU921900211_KGKenya4genomic RNA12316A,11I,14N,15L,27I,54M,58I,59I,68I,71D,79D,83L,92P,96I,111P,115L,116Q,120S,148V,154K,169F,171V,178T,180D,200S,207S,208G,225S
KU921901263_KGKenya3genomic RNA12316A,9H,11I,14P,15F,27I,31G,50S,54M,58I,71D,83L,87Q,92P,110N,111S,115V,120S,131R,148V,154K,169F,178T,183G,203R,207S,208G,225S
KU921902263_KGKenya5genomic RNA12316A,9H,11I,14P,15F,27I,30R,31G,50S,54M,58L,71D,83L,87Q,92P,110N,111S,115V,120S,131R,148V,154K,169F,178T,183G,203R,207S,208G,225S
KU921903263_KGKenya6genomic RNA12316A,9H,11I,14P,15F,27I,30R,31G,50S,54M,58I,64V,71D,83L,87Q,92P,110N,111S,115V,120S,131R,148V,154K,169F,178T,183G,203R,207S,208G,225S
KU921904278_KGKenya2genomic RNA12316A,15L,41T,50G,71D,83L,86A,87Q,92P,96L,120S,148V,154K,169F,178T,183S,187D,200S,203R,208G,210S,225S
KU921905278_KGKenya3genomic RNA12316A,15L,41T,50G,71D,83L,86A,87Q,92P,96L,120S,148V,154K,169F,178T,183S,187D,200S,203R,208G,210S,225S
KU921906278_KGKenya4genomic RNA12316A,15L,41T,50G,71D,83L,86A,87Q,92P,96L,120S,148V,154K,169F,178T,183S,187D,200S,203R,208G,210S,225S
KU921907278_KGKenya6genomic RNA12316A,15L,41T,50G,71D,83L,86A,87Q,92P,96L,120S,148V,154K,169F,178T,183S,187D,200S,203R,208G,210S,225S
KU921908282_KGKenya1genomic RNA12316L,14T,15L,27I,41T,50T,71D,83T,91H,92P,110N,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KU921909282_KGKenya2genomic RNA12316L,15L,27I,41T,50T,71D,83T,91H,92P,110N,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KU921910282_KGKenya3genomic RNA12316L,14T,15L,27I,41T,50T,71D,83T,91H,92P,110N,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KU921911320_KGKenya5genomic RNA12316A,10L,11T,12Y,27I,37V,54M,58I,68I,71D,83L,87Q,91V,111P,115A,120G,132K,139H,148V,169F,178T,203R,208G,210S,225S
KU921912320_KGKenya7genomic RNA12316A,10L,11T,12Y,27I,37V,54M,58I,68I,71D,83L,87Q,91V,111P,115A,120G,132K,139H,148V,169F,178T,203R,208G,210S,225S
KU921913320_KGKenya9genomic RNA12316A,10L,11T,12Y,27I,37V,54M,58I,68I,71D,83L,87Q,91V,111P,115A,120G,132K,139H,148V,169F,178T,203R,208G,210S,225S
KU921914320_KGKenya10genomic RNA12316A,10L,11T,12Y,27I,37V,54M,58I,68I,71D,83L,87Q,91V,111P,115A,120G,132K,139H,148V,169F,178T,203R,208G,210S,225S
KU921915322_KGKenya2genomic RNA12316A,14T,15L,27I,41A,48I,56M,58V,71D,83L,87Q,92P,96I,111P,115V,116A,118I,120G,128D,132G,148V,169F,178T,183G,187D,200S,203R,207A,208G,225S
KU921916322_KGKenya3genomic RNA12316A,14T,15L,27I,41A,48I,56M,58V,71D,83L,87Q,92P,96I,111P,115V,116A,118I,120G,128D,132G,148V,169F,178T,183G,187D,200S,203R,207A,208G,225S
KU921917322_KGKenya6genomic RNA12316A,14T,15L,27I,41A,48I,56M,58V,71D,83L,87Q,92P,96I,111P,115V,116A,118I,120G,128D,132G,148V,169F,178T,183G,187D,200S,203R,207A,208G,225S
KU921918326_KGKenya2genomic RNA12316A,11M,14H,15M,27I,31G,54M,58I,71D,92P,111I,120S,124V,128D,148V,153V,154K,169F,171I,178T,183G,207T,208G
KU921919326_KGKenya5genomic RNA12316A,11M,14H,15M,27I,31G,54M,58I,71D,92P,111I,120S,124V,128D,148V,153V,154K,169F,171I,178T,183G,207T,208G
KU921920326_KGKenya6genomic RNA12316A,11M,14H,15M,27I,31G,54M,58I,71D,92P,111I,120S,124V,128D,148V,153V,154K,169F,171I,178T,183G,207T,208G
KU921921326_KGKenya7genomic RNA12316A,11M,14H,15M,27I,31G,54M,58I,71D,92P,111I,120S,124V,128D,148V,153V,154K,169F,171I,178T,183G,207T,208G
KU921922331_KGKenya1genomic RNA12316A,10F,11T,14S,15L,27I,54M,58I,71D,83L,87Q,92P,96I,111T,115L,116A,120G,128D,148V,154K,169F,171C,178T,183G,200S,203R,207T,208G
KU921923331_KGKenya2genomic RNA12316A,10F,11T,14S,15L,27I,54M,58I,71D,83L,87Q,92P,96I,111T,115L,116A,120G,128D,148V,154K,169F,171C,178T,183G,200S,203R,207T,208G
KU921924331_KGKenya3genomic RNA12316A,10F,11T,14S,15L,27I,54M,58I,71D,83L,87Q,92P,96I,111T,115L,116A,120G,128D,148V,154K,169F,171C,178T,183G,200S,203R,207T,208G
KU921925331_KGKenya4genomic RNA12316A,10F,11T,14S,15L,27I,54M,58I,71D,83L,87Q,92P,96I,111T,115L,116A,120G,128D,148V,154K,169F,171C,178T,183G,200S,203R,207T,208G
KU921926339_KGKenya1genomic RNA12312V,6A,11I,14T,15F,27I,31G,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,171C,178T,183G,199R,200S,203R,207T,208G
KU921927339_KGKenya2genomic RNA12312V,6A,11I,14T,15F,27I,31G,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,171C,178T,183G,200S,203R,207T,208G
KU921928339_KGKenya3genomic RNA12312V,6A,11I,14T,15F,27I,31G,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,171C,178T,183G,200S,203R,207T,208G
KU921929339_KGKenya4genomic RNA12312V,6A,11I,14T,15F,27I,31G,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,171C,178T,183G,200S,203R,207T,208G
KU921930366_KGKenya2genomic RNA12312V,6A,14N,15L,27I,29D,54M,58I,71D,83M,111P,116A,120G,128D,148V,154K,169F,178T,183G,200S,203R,207A,208G
KU921931366_KGKenya3genomic RNA12312V,6A,14N,15L,27I,29D,54M,58I,71D,83M,91V,111P,116A,120G,128D,148V,154K,169F,178T,183G,200S,203R,207A,208G
KU921932366_KGKenya4genomic RNA12312V,6A,14N,15L,27I,29D,54M,58I,71D,83M,91V,111P,116A,120G,128D,148V,154K,169F,178T,183G,200S,203R,207A,208G
KU921933366_KGKenya5genomic RNA12312V,6A,14N,15L,27I,29D,54M,58I,71D,83M,91V,111P,116A,120G,128D,148V,154K,169F,178T,183G,200S,203R,207A,208G
KU921934374_KGKenya2genomic RNA12316A,15L,27I,29D,54M,58V,71D,83L,92P,111I,120G,128D,148V,154K,169F,178T,183G,208G,225S,230I
KU921935374_KGKenya5genomic RNA12316A,15L,27I,29D,54M,58V,71D,83L,92P,111I,120G,128D,148V,154K,169F,178T,183G,203R,208G,225S,230I
KU921936374_KGKenya11genomic RNA12316A,15L,27I,29D,54M,58V,71D,83L,92P,111I,120G,128D,148V,154K,169F,178T,183G,203R,208G,225S,230I
KU921937374_KGKenya14genomic RNA12316A,15L,27I,29D,54M,58V,71D,83L,92P,111I,120G,128D,148V,154K,169F,178T,183G,208G,225S,230I
KU921938374_KGKenya15genomic RNA12316A,15L,27I,29D,54M,58V,71D,83L,92P,111I,120G,128D,148V,154K,169F,178T,183G,203R,208G,225S,230I
KU921939382_KGKenya3genomic RNA12316L,15L,27I,41T,75D,83L,91V,110N,116A,120S,148V,154K,180D,208G
KU921940382_KGKenya4genomic RNA12316L,15L,27I,41T,75D,83L,91V,110N,116A,120S,148V,154K,175G,180D,208G
KU921941382_KGKenya5genomic RNA12316L,15L,27I,41T,75D,83L,91V,110N,116A,120S,148V,154K,180D,208G
KU921942385_KGKenya9genomic RNA12316V,10W,16T,27I,68I,75D,83Q,91V,96L,116Q,120G,128N,148V,180D,200N,208G,225S
KU921943385_KGKenya10genomic RNA12316V,10W,16T,27I,68I,75D,83Q,91V,96L,116Q,120G,128N,148V,180D,200N,208G,225S
KU921944385_KGKenya11genomic RNA12316V,10W,16T,27I,68I,75D,83Q,91V,96L,116Q,120G,128N,148V,180D,200N,208G,225S
KU921945386_KGKenya12genomic RNA12316A,14P,15V,41A,71D,83L,92P,110N,116A,120S,124V,132K,148V,154K,169F,178T,183G,187D,200S,203R,208G
KU921946386_KGKenya14genomic RNA12316A,14P,15V,41A,71D,83L,92P,110N,116A,120S,124V,132K,148V,154K,169F,178T,183G,187D,200S,203R,208G
KU921947386_KGKenya15genomic RNA12316A,14P,15V,41A,71D,83L,92P,110N,116A,120S,124V,132K,148V,154K,169F,178T,183G,187D,200S,203R,208G
KU921948391_KGKenya1genomic RNA12316A,11I,15L,27I,54M,58I,71D,83I,91P,111T,116A,120G,128D,148V,154K,169F,171A,178T,183G,200S,207T,208G
KU921949391_KGKenya2genomic RNA12316A,11I,15L,27I,54M,58I,71D,83I,91P,111T,116A,120G,128D,148V,154K,169F,171A,178T,183G,200S,207T,208G
KU921950391_KGKenya4genomic RNA12316A,11I,15L,27I,54M,58I,71D,83I,91P,111T,116A,120G,128D,148V,154K,169F,171A,178T,183G,200S,207T,208G
KU921951391_KGKenya5genomic RNA12316A,11I,15L,27I,54M,58I,71D,83I,91P,111T,116A,120G,128D,148V,154K,169F,171A,178T,183G,200S,207T,208G
KU921952391_KGKenya7genomic RNA12316A,11I,15L,27I,54M,58I,71D,83I,91P,111T,116A,120G,128D,148V,154K,169F,171A,178T,183G,200S,207T,208G
KU921953391_KGKenya25genomic RNA12316A,11I,15L,27I,54M,58I,71D,83I,91P,111T,116A,120G,128D,148V,154K,169F,171A,178T,183G,200S,207T,208G
KU921954391_KGKenya27genomic RNA12316A,11I,15L,27I,54M,58I,71D,83I,91P,111T,116A,120G,128D,148V,154K,169F,171A,178T,183G,200S,207T,208G
KU921955391_KGKenya28genomic RNA12316A,11I,15L,27I,54M,58I,71D,83I,91P,111T,116A,120G,128D,148V,154K,169F,171A,178T,183G,200S,207T,208G
KU921956391_KGKenya29genomic RNA12316A,11I,15L,27I,54M,58I,71D,83I,91P,111T,116A,120G,128D,148V,154K,169F,171A,178T,183G,200S,207T,208G
KU921957405_KGKenya1genomic RNA12316A,11I,15L,27I,30R,44A,45D,48I,54M,58I,71D,83L,87Q,92P,96L,111P,120G,148V,154K,169F,178T,187D,200S,203R,208G
KU921958405_KGKenya5genomic RNA12316A,11I,15L,27I,30R,44A,54M,58I,71D,83L,87Q,92P,96L,111P,120G,148V,154K,169F,178T,187D,200S,203R,208G
KU921959407_KGKenya1genomic RNA12316A,12L,14N,15L,27I,54M,58I,71D,83L,92P,96I,111P,115L,116A,118I,120G,148V,154K,169F,170R,178T,203R,204G,207T,208G,230I
KU921960407_KGKenya2genomic RNA12316A,12L,14N,15L,27I,54M,58I,71D,83L,92P,96I,111P,115L,116A,118I,120G,148V,154K,169F,170R,178T,203R,204G,207T,208G,230I
KU921961407_KGKenya4genomic RNA12316A,12L,14N,15L,27I,54M,58I,71D,83L,92P,96I,111P,115L,116A,118I,120G,148V,154K,169F,170R,178T,203R,204G,207T,208G,230I
KU921962426_KGKenya1rgenomic RNA12316A,11M,15L,27I,45D,54S,58A,68I,78S,83L,120S,128D,148V,154K,169F,178T,208G,210S,225S
KU921963426_KGKenya2rgenomic RNA12316A,11M,15L,27I,45D,54S,58A,68I,78S,83L,120S,128D,148V,154K,169F,178T,208G,210S,225S
KU921964426_KGKenya3rgenomic RNA12316A,11M,15L,27I,45D,54S,58A,68I,78S,83L,120S,128D,148V,154K,169F,178T,208G,210S,225S
KU921965426_KGKenya4rgenomic RNA12316A,11M,15L,27I,45D,54S,58A,68I,78S,83L,120S,128D,148V,154K,169F,178T,208G,210S,212G,225S
KU921966426_KGKenya1genomic RNA12316L,15M,27I,45D,54S,58A,68I,83L,91V,96L,128D,146C,148V,154K,183G,208G,210S,225S
KU921967426_KGKenya2genomic RNA12316L,15M,27I,45D,54S,58A,68I,83L,91V,96L,128D,146C,148V,154K,183G,208G,210S,225S
KU921968426_KGKenya5genomic RNA12316A,11M,15L,27I,45D,54S,58A,68I,78S,83L,120S,128D,148V,154K,169F,178T,208G,210S,225S
KU921969426_KGKenya6genomic RNA12316A,11M,15L,27I,45D,54S,58A,68I,78S,83L,120S,128D,148V,154K,169F,178T,208G,210S,225S
KU921970426_KGKenyaBgenomic RNA12316A,11M,15L,27I,45D,54S,58A,68I,78S,83L,120S,128D,148V,154K,169F,178T,208G,210S,225S
KU922081426_KG_SGA1Kenyagenomic RNA12316A,11M,15L,27I,45D,54S,58A,68I,78S,83L,120S,128D,148V,154K,169F,178T,208G,210S,225S
KU922086426_KG_SGA10Kenyagenomic RNA12316L,15M,27I,45D,54S,58A,68I,83L,91V,96L,128D,146C,148V,154K,183G,208G,210S,225S
KU922087426_KG_SGA11Kenyagenomic RNA12316A,11M,15L,27I,31G,33N,54M,58I,71D,83L,87Q,92P,111P,120S,128D,148V,154K,169F,178T,183G,203R,207S,208G,209V,211I,216S
KU922088426_KG_SGA12Kenyagenomic RNA12316A,11M,15L,27I,31G,33N,54M,58I,71D,83L,87Q,92P,111P,120S,128D,148V,154K,169F,178T,183G,203R,207S,208G,209V,211I,215S,216S,225V
KU922084426_KG_SGA2Kenyagenomic RNA12316A,11M,15L,27I,45D,54S,58A,68I,78S,83L,120S,128D,148V,154K,169F,178T,186S,194V,195K,200A,208G,209G,210S,215K,217T,224A,225S
KU922082426_KG_SGA2aKenyagenomic RNA12316A,11M,15L,27I,45D,54S,58A,68I,78S,83L,120S,128D,148V,154K,169F,178T,208G,210S,225S
KU922083426_KG_SGA5Kenyagenomic RNA12316L,15M,27I,45D,54S,58A,68I,83L,91V,96L,128D,146C,148V,154K,183G,208G,210S,225S
KU922089426_KG_SGA6Kenyagenomic RNA12316A,11M,15L,27I,31G,33N,54M,58I,71D,83L,87Q,92P,111P,120S,128D,148V,154K,169F,178T,183G,203R,207S,208G
KU922090426_KG_SGA7Kenyagenomic RNA12316L,15M,27I,45D,54S,58A,68I,83L,91V,96L,128D,146C,148V,154K,183G,208G,210S,225S
KU922091426_KG_SGA8Kenyagenomic RNA12316A,11M,15L,27I,45D,54S,58A,68I,78S,83L,120S,128D,148V,154K,169F,178T,208G,210S,225S
KU922085426_KG_SGA8aKenyagenomic RNA12316A,11M,15L,27I,45D,54S,58A,68I,78S,83L,120S,128D,148V,154K,169F,178T,186S,190V,194V,195K,200A,208G,209G,210S,215K,217T,224A,225S
KU921971430_KGKenya8genomic RNA12316L,15L,27I,41A,83L,87P,91L,96V,120S,148V,208G
KU921972430_KGKenya10genomic RNA12316L,15L,27I,41A,83L,87P,91L,96V,120S,148V,208G
KU921973430_KGKenya11genomic RNA12316L,15L,27I,41A,83L,87P,91L,96V,120S,148V,208G
KU921974430_KGKenya12genomic RNA12316L,15L,27I,41A,83L,87P,91L,96V,120S,148V,208G
KU921975467_KGKenya1genomic RNA12316A,11T,14P,15V,27I,41T,54M,58I,71D,83I,87P,91P,96I,111I,116R,120S,128D,135V,148V,154K,169F,171V,178T,180D,200S,203R,207T,208G
KU921976467_KGKenya2genomic RNA12316A,11T,14P,15V,27I,41T,54M,58I,71D,83I,87P,91P,96I,111I,116R,120S,128D,135V,148V,154K,169F,171V,178T,180D,200S,203R,207A,208G
KU921977467_KGKenya3genomic RNA12316A,11T,14P,15V,27I,41T,54M,58I,71D,83I,87P,91P,96I,111I,116R,120S,128D,135V,148V,154K,169F,171V,178T,180D,200S,203R,207T,208G
KU921978467_KGKenya4genomic RNA12316A,11T,14P,15V,27I,41T,54M,58I,71D,83I,87P,91P,96I,111I,116R,120S,128D,135V,148V,154K,169F,171V,178T,180D,200S,203R,207A,208G
KU921979473_KGKenya2genomic RNA12316M,14P,17A,27I,31N,41T,71D,83L,91V,116A,120A,128D,146C,154K,160A,169F,178T,187D,194S,203R,208G,210S
KU921980473_KGKenya3genomic RNA12316M,14P,17A,27I,31N,41T,71D,83L,91V,116A,120A,128D,146C,154K,160A,169F,178T,187D,203R,208G,210S
KU921981473_KGKenya4genomic RNA12316M,14P,17A,27I,31N,41T,71D,83L,91V,116A,120A,128D,146C,154K,160A,169F,178T,187D,194S,203R,204~,205~,206~,208G,210S
KU921982473_KGKenya6genomic RNA12316M,14P,17A,27I,31N,41T,71D,83L,91V,116A,120A,128D,146C,154K,160A,169F,178T,187D,194S,203R,208G,210S
KU921983475_KGKenya1agenomic RNA12316A,12Y,15V,27I,54M,58I,71D,83L,87Q,91V,96I,111I,115M,116A,120S,128D,148V,154K,169F,178T,199R,200S,203R,208G
KU921984475_KGKenya1genomic RNA12316A,10T,11I,12Y,15V,27I,54M,58I,71D,83L,87Q,91V,96I,111I,115M,116A,120S,128D,148V,154K,169F,178T,199R,200S,203R,208G
KU921985475_KGKenya2genomic RNA12316A,10T,11I,12Y,15V,27I,54M,58I,71D,83L,87Q,91V,96I,111I,115M,116A,120S,128D,148V,154K,169F,178T,199R,200S,203R,208G
KU921986475_KGKenya3genomic RNA12316A,12Y,15V,27I,54M,58I,71D,83L,87Q,91V,96I,111I,115M,116A,120S,128D,148V,154K,169F,178T,199R,200S,203R,208G
KU921987476_KGKenya3genomic RNA12316L,27I,36I,41T,71D,78V,83L,91V,116A,120S,124V,128D,148V,152G,154K,169F,171C,178T,183S,203R,225S,229K
KU921988476_KGKenya5genomic RNA12316L,27I,36I,41T,71D,83L,91V,116A,120S,124V,128D,148V,169F,171C,178T,180D,203R,225S
KU921989476_KGKenya6genomic RNA12316L,27I,36I,41T,71D,78V,83L,91V,116A,120S,124V,128D,148V,169F,171C,178T,180D,203R,225S
KU921990476_KGKenya7genomic RNA12316L,27I,36I,41T,71D,83L,87Q,91V,116A,120S,124V,128D,148V,154K,169F,171C,178T,183H,203R,225S
KU921991480_KGKenya1genomic RNA12316A,11I,14P,15L,27I,54M,58V,71D,83L,92P,110N,111T,115L,116A,120G,128D,148V,154K,169F,178T,181I,183G,187D,207T,208G,225S
KU921992480_KGKenya2genomic RNA12316A,11I,14P,15L,27I,54M,58V,71D,83L,92P,110N,111T,115L,116A,120G,128D,148V,154K,169F,178T,181I,183G,187D,207T,208G,225S
KU921993480_KGKenya4genomic RNA12316A,11I,14P,15L,27I,54M,58V,71D,83L,92P,110N,111T,115L,116A,120G,128D,148V,154K,169F,178T,181I,183G,187D,207T,208G,225S
KU921994480_KGKenya5genomic RNA12316A,11I,14P,15L,27I,54M,58V,71D,83L,92P,110N,111T,115L,116A,120G,128D,148V,154K,169F,178T,181I,183G,187D,207T,208G,225S
KU921995496_KGKenya1genomic RNA12316A,11T,14N,15L,26A,27I,41A,54M,58I,79D,83T,86A,91N,92P,116A,120G,132K,148V,152G,154K,179T,183S,207S,208G,225S
KU921996496_KGKenya2genomic RNA12316A,11T,14N,15L,26A,27I,41A,54M,58I,79D,83T,86A,91N,92P,116A,120G,132K,148V,154K,179T,183S,207S,208G,225S
KU921997496_KGKenya3genomic RNA12316A,11T,14N,15L,26A,27I,41A,54M,58I,79D,83T,86A,91N,92P,116A,120G,132K,148V,154K,179T,183S,207S,208G,225S
KU921998496_KGKenya4genomic RNA12316A,11T,14N,15L,26A,27I,41A,54M,58I,79D,83T,86A,91N,92P,116A,120G,132K,148V,154K,179T,183S,207S,208G,225S
KU921999497_KGKenya2genomic RNA12316A,11T,14S,15L,27I,33N,36I,41A,54M,58I,83T,91Y,93L,115M,116A,120S,132K,148V,154K,171A,180D,200N,207S,208G,225S
KU922000497_KGKenya3genomic RNA12316A,11I,14S,15L,27I,33N,36I,41A,54M,58I,83T,91Y,93L,115M,116A,120S,132K,148V,154K,171A,180D,200N,207S,208G,225S
KU922001497_KGKenya4genomic RNA12316A,11I,14S,15L,27I,33N,36I,41A,54M,58I,83T,91Y,93L,115M,116A,120S,132K,148V,154K,171A,180D,200N,207S,208G,225S
KU922002497_KGKenya5genomic RNA12316A,11T,14S,15L,27I,33N,36I,41A,54M,58I,83T,91Y,93L,115M,116A,120S,132K,148V,154K,171A,180D,200S,207Q,208G,225S
KU922003497_KGKenya31genomic RNA12316A,11I,14S,15L,27L,33N,36I,41A,54M,58I,83T,91Y,115M,116A,120S,132K,148V,154K,171A,180D,200N,207S,208G,225S
KU922004497_KGKenya41genomic RNA12316A,11I,14S,15L,27I,33N,36I,41A,54M,58I,83T,91Y,93L,115M,116A,120S,132K,148V,154K,171A,180D,200N,207S,208G,225S
KU922005497_KGKenya45genomic RNA12316A,11T,14S,15L,27I,33N,36I,41A,54M,58I,83T,115M,116A,120S,132K,148V,154K,171A,180D,200S,207Q,208G,225S
KU922006502_KGKenya1genomic RNA12316L,14P,15M,17A,27I,41I,71D,83L,93Q,96L,110N,116A,120S,124V,128D,135V,148V,154K,169F,171C,178T,180D,207T,208G,225S
KU922007502_KGKenya4genomic RNA12316L,14P,15M,17A,27I,41I,71D,83L,93Q,96L,110N,116A,120S,124V,128D,135V,148V,154K,169F,171C,172I,178T,180D,187K,207T,208G,225S
KU922008511_KGKenya1genomic RNA12316A,15V,27I,50G,58V,71D,83L,87Q,96I,111P,115V,116A,120G,128D,131R,139H,148V,154K,169F,178T,191I,200N,203R,207A,208G
KU922009511_KGKenya3genomic RNA12316A,15V,27I,50G,58V,71D,83L,87Q,96I,111P,115V,116A,120G,128D,131R,139H,148V,154K,169F,178T,191I,200N,203R,207A,208G
KU922010511_KGKenya4genomic RNA12316A,15V,27I,50G,58V,71D,83L,87Q,96I,111P,115V,116A,120G,128D,131R,139H,148V,154K,169F,178T,191I,200N,203R,207A,208G
KU922011515_KGKenya3genomic RNA12316A,11T,14N,15L,27I,33N,54M,58I,83T,86T,91N,115V,116A,120G,132K,148V,154K,180D,207A,208G,225S
KU922012515_KGKenya6genomic RNA12316A,11T,14N,15L,27I,54M,58I,83T,87Q,115V,116A,119I,120G,132K,148V,154K,180D,207A,208G,225S
KU922013515_KGKenya8genomic RNA12316A,11T,14N,15L,27I,33N,54M,58I,83T,86T,91N,115V,116A,120G,132K,148V,154K,180D,207A,208G,225S
KU922014515_KGKenya9genomic RNA12316A,11T,14N,15L,27I,33N,54M,58I,83T,86T,91N,115V,116A,120G,132K,148V,154K,180D,207A,208G,225S
KU922015525_KGKenya3genomic RNA12316V,14P,27I,31N,41T,71D,83L,110N,115V,116A,120G,128D,148V,169F,178T,180D,187D,203R,208G,210S
KU922016525_KGKenya4genomic RNA12316V,11I,14P,27I,31N,41T,71D,83L,110N,115V,116A,120G,128D,148V,169F,178T,180D,187D,203R,208G,210S
KU922017526_KGKenya2genomic RNA12316A,12L,14T,15L,27I,54M,58I,71D,83L,92P,111P,115L,120S,128D,148V,154K,169F,178T,183G,200S,203R,207T,208G,210S
KU922018526_KGKenya4genomic RNA12316A,12L,14T,15L,27I,54M,58I,71D,83L,92P,111P,115L,120S,128D,148V,154K,169F,178T,183G,200S,203R,207T,208G,210S
KU922019526_KGKenya5genomic RNA12316A,12L,14T,15L,27I,54M,58I,71D,83L,92P,111P,115L,120S,128D,148V,154K,169F,178T,183G,200S,203R,207T,208G,210S
KU922020527_KGKenya1rgenomic RNA12316L,14P,15L,27I,29D,41T,83L,87Q,91V,110N,120S,148V,183G,208G,210S,225S
KU922021527_KGKenya2rgenomic RNA12316L,14P,15L,27I,29D,41T,83L,87Q,91V,110N,120S,148V,183G,208G,210S,225S
KU922022527_KGKenya3rgenomic RNA12316L,14P,15L,27I,29D,41T,83L,87Q,91V,110N,120S,148V,183G,208G,210S,225S
KU922023527_KGKenya4rgenomic RNA12316L,14P,15L,27I,29D,41T,83L,87Q,91V,110N,120S,148V,183D,208G,210S,216A,225S
KU922024527_KGKenya2genomic RNA12316L,14P,15L,27I,29D,41T,83L,87Q,91V,110N,120S,148V,154K,183G,208G,210S,225S
KU922025527_KGKenya3genomic RNA12316L,14P,15L,27I,29D,41T,83L,87Q,91V,110N,120S,148V,162K,183G,208G,210S,225S
KU922026527_KGKenya4genomic RNA12316L,14P,15L,27I,29D,41T,83L,87Q,91V,110N,120S,148V,183G,208G,210S,225S
KU922027527_KGKenya7genomic RNA12316L,14P,15L,27I,29D,41T,83L,87Q,91V,110N,120S,148V,183G,208G,210S,225S
KU922028552_KGKenya2genomic RNA12316L,14P,15L,16T,27I,29D,41T,83L,87Q,91V,110N,120S,148V,180D,208G,210S,225S
KU922029552_KGKenya7genomic RNA12316L,14P,15L,16T,27I,29D,41T,83L,87Q,91V,110N,120S,148V,180D,208G,210S,225S
KU922030552_KGKenya9genomic RNA12316L,14P,15L,16T,27I,29D,41T,83L,87Q,91V,110N,120S,148V,180D,208G,210S,225S
KU922031574_KGKenya2genomic RNA12316L,14N,15M,27I,41T,71D,83L,87Q,91P,96L,116A,120H,128D,136I,148V,169F,178T,180D,187D,191I,208G
KU922032574_KGKenya8rgenomic RNA12316L,14N,15M,27I,41T,50R,71D,83L,87Q,91P,96L,116A,120H,128D,148V,169F,178T,180D,191I,194T,208G
KU922033574_KGKenyaBgenomic RNA12316L,14N,15M,27I,41T,50R,71D,83L,87Q,91P,96L,116A,120H,128D,148V,169F,178T,180D,187D,191I,194T,208G
KU922034575_KGKenya1rgenomic RNA12316A,11I,14N,15L,27I,45D,54M,58I,83L,115V,116A,118I,120G,148V,178T,186P,200S,207T,208G,225S
KU922035575_KGKenya2rgenomic RNA12316A,11I,14N,15L,27I,45D,54M,58I,83L,115V,116A,118I,120G,148V,178T,200S,207T,208G,225S
KU922036575_KGKenya3rgenomic RNA12316A,11I,14N,15L,27I,45D,54M,58I,83L,115V,116A,118I,120G,148V,178T,200S,207T,208G,225S
KU922037575_KGKenya4rgenomic RNA12316A,11I,14N,15L,27I,45D,54M,58I,83L,115V,116A,118I,120G,148V,178T,200S,207T,208G,225S
KU922038575_KGKenya16genomic RNA12316A,11I,14N,15L,27I,45D,54M,58I,83L,115V,116A,118I,120G,148V,178T,200S,207T,208G,225S
KU922039575_KGKenya1genomic RNA12316A,11I,14N,15L,27I,45D,54M,58I,83L,115V,116A,118I,120G,148V,178T,200S,207T,208G,225S
KU922040575_KGKenya2genomic RNA12316A,11I,14N,15L,27I,45D,54M,58I,83L,115V,116A,118I,120G,148V,200S,207T,208G,225S
KU922041575_KGKenya3genomic RNA12316A,11I,14N,15L,27I,45D,54M,58I,83L,115V,116A,118I,120G,148V,178T,200S,207T,208G,225S
KU922042575_KGKenya7genomic RNA12316A,11I,14N,15L,27I,45D,54M,58I,83L,115V,116A,118I,120G,148V,178T,200S,207T,208G,225S
KU922043603_KGKenya3genomic RNA12316A,11I,15L,27I,48A,50L,54M,58V,71D,83L,92P,112P,120A,128D,148V,154K,169F,178T,200Q,208G,230I
KU922044603_KGKenya11genomic RNA12316A,11I,15L,27I,48A,50L,54M,58V,71D,83L,92P,112P,120A,128D,148V,154K,169F,178T,200Q,208G,230I
KU922045603_KGKenya18genomic RNA12316A,11I,15L,27I,48A,50L,54M,58V,71D,83L,92P,112P,120A,128D,148V,154K,169F,178T,200Q,208G,230I
KU922046649_KGKenyagenomic RNA12312V,6A,11I,12Y,14T,15L,27I,31N,54M,58I,71D,83I,92P,96I,111P,116Q,120G,128D,148V,154K,169F,171A,178T,183G,200S,207S,208G,210S
KU922047650_KGKenya1genomic RNA12316L,14N,15L,27I,41T,71D,83L,96I,116T,148V,154K,169F,178T,180D,187D,191I,207S,208G,210S
KU922048650_KGKenya2genomic RNA12316L,14N,15L,27I,41T,71D,83L,96I,116T,148V,154K,169F,178T,180D,187D,191I,207S,208G,210S
KU922049650_KGKenya3genomic RNA12316L,14N,15L,27I,41T,71D,83L,96I,116T,148V,154K,169F,178T,180D,187D,191I,207S,208G,210S
KU922050650_KGKenya7genomic RNA12316L,14N,15L,27I,41T,71D,83L,96I,116T,148V,154K,169F,178T,180D,187D,191I,207S,208G,210S
KU922051655_KGKenya1genomic RNA12316A,14T,15M,26A,27I,54M,58I,71D,92P,120S,128D,148V,154K,169F,178T,183G,191I,200S,203R,207A,208G,225S
KU922052655_KGKenya3genomic RNA12316A,14T,15M,26A,27I,54M,58I,71D,75G,92P,120S,128D,148V,154K,169F,178T,183G,191I,200S,203R,207A,208G,225S
KU922053655_KGKenya4genomic RNA12316A,14T,15M,26A,27I,54M,58I,71D,92P,120S,128D,148V,154K,169F,178T,183G,191I,200S,203R,207A,208G,225S
KU922054655_KGKenya9genomic RNA12316A,14T,15M,26A,27I,54M,58I,71D,92P,113G,120S,128D,148V,154K,169F,178T,183G,191I,200S,203R,207A,208G,225S
KU922055657_KGKenya1genomic RNA12316A,11I,14N,15L,27I,41T,50G,54M,58I,59I,75D,83T,87Q,92P,96L,111P,115L,120G,128D,148V,154K,169F,171V,180D,203R,225S
KU922056657_KGKenya2genomic RNA12316A,14N,15L,27I,41T,50G,54M,58I,59I,75D,83T,87Q,92P,96L,111P,115L,120G,128D,148V,154K,169F,171V,180D,187D,203R,225S
KU922057657_KGKenya3genomic RNA12316A,14N,15L,27I,41T,50G,54M,58I,59I,75D,83T,87Q,92P,96L,111P,115L,120G,128D,148V,154K,169F,171V,180D,187D,203R,225S
KU922058657_KGKenya4genomic RNA12316A,14N,15L,27I,30Q,41T,50G,54M,58I,59I,75D,83T,87Q,92P,96L,111P,115L,120G,128D,148V,154K,169F,171V,180D,203R,225S
KU922059675_KGKenya1genomic RNA12316L,14P,15M,17A,27I,41I,71D,83L,93Q,96L,110S,116A,120S,124V,128D,135V,148V,154K,169F,171C,178T,180D,207T,208G
KU922060675_KGKenya2genomic RNA12316L,14P,15M,17A,27I,41I,71D,83L,93Q,96L,110S,116A,120S,124V,128D,135V,148V,154K,169F,171C,178T,180D,207T,208G
KU922061675_KGKenya5genomic RNA12316L,14P,15M,17A,27I,41I,71D,83L,93Q,96L,110S,116A,120S,124V,128D,135V,148V,154K,169F,171C,178T,180D,207T,208G
KU922062675_KGKenya6genomic RNA12316L,14P,15M,17A,27I,41I,71D,83L,93Q,96L,110S,116A,120S,124V,128D,135V,148V,154K,169F,171C,176R,178T,180D,207T,208G
KU922063681_KGKenya2genomic RNA12316A,12Y,15V,27I,54M,58I,71D,83I,92P,111P,120S,128D,131R,148V,154K,169F,178T,194S,199R,200N,203R,208G,230I
KU922064681_KGKenya3genomic RNA12316A,12Y,15V,27I,54M,58I,71D,83L,92P,111P,120S,128D,131R,148V,154K,169F,178T,194S,199R,200N,203R,208G,230I
KU922065713_KGKenya1genomic RNA12316A,71D,92P,120S,148V,169F,178T,187D,204G,207T,208G
KU922066713_KGKenya2genomic RNA12316A,71D,92P,120S,148V,169F,178T,187D,204G,207T,208G
KU922067713_KGKenya3genomic RNA12316A,71D,92P,120S,148V,169F,178T,187D,204G,207T,208G
KU922068713_KGKenya4genomic RNA12316A,58K,71D,92P,120S,148V,169F,178T,187D,204G,207T,208G
KU922069717_KGKenya2rgenomic RNA12316A,14N,15L,27I,50G,58I,71D,83L,91V,92P,111P,120S,128D,131R,148V,154K,169F,178T,180D,200S,203R,207A,208G
KU922070717_KGKenya3rgenomic RNA12316A,14N,15L,27I,50G,54L,58I,71D,83L,91V,92P,111P,120S,128D,148V,154K,169F,178T,180D,200S,203R,207A,208G,211V
KU922071717_KGKenya4rgenomic RNA12316A,14N,15L,27I,50G,54L,58I,71D,83L,91V,92P,103G,111P,120S,128D,148V,154K,169F,178T,180D,200S,203R,207A,208G,211V
KU922072717_KGKenya6agenomic RNA12316A,14N,15L,27I,50G,54L,58I,71D,83L,91V,92P,111P,120S,128D,148V,154K,169F,178T,180D,200S,203R,207A,208G,211V
KU922073717_KGKenya3genomic RNA12316A,14N,15L,27I,50G,58I,71D,83L,91V,92P,111P,120S,128D,131R,148V,154K,169F,178T,180D,200S,203R,207T,208G,211V
KU922074717_KGKenya4genomic RNA12316A,14N,15L,27I,50G,58I,71D,83L,91V,92P,111P,120S,128D,131R,148V,154K,169F,178T,180D,200S,203R,207T,208G,211V
KU922075717_KGKenya5genomic RNA12316A,14N,15L,27I,50G,58I,71D,83L,91V,92P,111P,120S,128D,131R,148V,154K,169F,178T,180D,200S,203R,207T,208G,211V
KU922076717_KGKenya6genomic RNA12316A,14N,15L,27I,50G,58I,71D,83L,91V,92P,111P,120S,128D,131R,148V,154K,159D,169F,178T,180D,200S,203R,207T,208G,211V
KU922077732_KGKenya1genomic RNA12316L,14P,15M,27I,41T,71D,83L,86A,87Q,91V,98D,110N,116A,120G,128D,148V,154K,162K,169F,178T,180D,187D,191I,203R,208G,210S
KU922078732_KGKenya2genomic RNA12316L,14P,15M,27I,41T,71D,83L,86A,87Q,91V,98D,110N,116A,120G,128D,148V,154K,169F,178T,180D,187D,191I,203R,208G,210S
KU922079732_KGKenya3genomic RNA12316L,14P,15M,27I,41T,71D,83L,86A,87Q,91V,98D,110N,116A,120G,128D,148V,154K,169F,178T,180D,187D,191I,203R,208G,210S
KU922080732_KGKenya4genomic RNA12316L,14P,15M,27I,41T,71D,83L,86A,87Q,91V,98D,110N,116A,120G,128D,148V,154K,169F,178T,180D,187D,191I,203R,208G,210S