<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Arcia (2018) HIV-1 Adaptation to Predominant HLA-I Alleles in Medellin, Colombia, Through the Selection of Novel Potential Immune Escape Mutations Infect Genet Evol. 2019 Apr;69:267-278 4.14e-173 45 50 Naive Plasma Direct PCR HLA

Download sequences

AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
MF190472011Colombia01-Feb-2014genomic DNAsubtype: B123115L,47T,71D,83L,86A,87Q,91V,96I,98D,116T,120G,154K,180D
MF190473013Colombia13-Feb-2014genomic DNAsubtype: B12316L,14P,15L,41T,83L,110N,180D,194S,208G,225S
MF190474014Colombia17-Feb-2014genomic DNAsubtype: B12316L,50S,54L,83L,128D,194S,225S,230I
MF190475016Colombia03-Mar-2014genomic DNAsubtype: B123115L,83L,87Q,136M,154K,178T,194S,208G
MF190476018Colombia06-Mar-2014genomic DNAsubtype: B12316L,14S,27I,83L,86P,87Q,120S,124V,208G
MF190477026Colombia22-Apr-2014genomic DNAsubtype: B12316L,14P,41T,154K,180D,194S,225S
MF190478027Colombia30-Apr-2014genomic DNAsubtype: B12316L,14P,83L,91V,116A,120G,123A,165I,200A
MF190479030Colombia11-Jul-2014genomic DNAsubtype: B12316L,83L,225S,230I
MF190480034Colombia08-Aug-2014genomic DNAsubtype: B12316M,14P,83L,154K,171V,180D,194S,225S,230I
MF190481040Colombia13-Aug-2014genomic DNAsubtype: B12316L,14P,83L,87P,91V,98D,110N,116A,128D,154K,171V,180D,225S,230I
MF190482044Colombia20-Aug-2014genomic DNAsubtype: B12316L,14P,15L,41T,83L,87Q,96I,110N,116A,154K,180D,225S
MF190483045Colombia20-Aug-2014genomic DNAsubtype: B12316L,14P,41A,83L,86A,87Q,91V,110N,120S,132K,136M
MF190484048Colombia25-Aug-2014genomic DNAsubtype: B12316L,27I,83L,148I,178T,194S,225S
MF190485051Colombia27-Aug-2014genomic DNAsubtype: B12316L,91T,120S,180D
MF190488060Colombia01-Sep-2014genomic DNAsubtype: B12316L,14P,27I,83L,86P,87Q,91V,120S,123A,208G,225S
MF190489066Colombia16-Sep-2014genomic DNAsubtype: B12316L,14P,41T,91A,120S,135V,154K,171V
MF190490067Colombia16-Sep-2014genomic DNAsubtype: B12206L,204T,209T,212K,216Y
MF190491068Colombia16-Sep-2014genomic DNAsubtype: B12316L,116A,154K,178T,194S
MF190492069Colombia17-Sep-2014genomic DNAsubtype: B12316L,14P,15L,72S,83L,116Q,120S,140R,154K,204T
MF190493073Colombia22-Sep-2014genomic DNAsubtype: B12316L,14P,83L,107V,128D,132K,136M,154K,171V,178T,180D
MF190494083Colombia16-Oct-2014genomic DNAsubtype: B12316L,180D
MF190495084Colombia17-Oct-2014genomic DNAsubtype: B12316L,27I,83L,91V,116N,120G,154K,178T,205M,208G,225S
MF190496085Colombia20-Oct-2014genomic DNAsubtype: B12316L,27I,41A,83I,91V,132K,136M,148V
MF190497086Colombia21-Oct-2014genomic DNAsubtype: B12316M
MF190498087Colombia22-Oct-2014genomic DNAsubtype: B12316L,14P,44A,83L,110N,180D
MF190499089Colombia30-Oct-2014genomic DNAsubtype: B12316L,14P,15L,27I,79D,83M,148V,180D,225S
MF190500090Colombia04-Nov-2014genomic DNAsubtype: B12316L,27I,36I,83L,128D,148V,178T,191I,225S
MF190501091Colombia05-Nov-2014genomic DNAsubtype: B12316L,78V,83L,154K
MF190502092Colombia07-Nov-2014genomic DNAsubtype: B12316L,41T,78S,83L,91V,120S,148I,154K,163E,180D
MF190503095Colombia27-Nov-2014genomic DNAsubtype: B12316M,14P,41A,83L,87Q,96I,116T,120S,124T
MF190504096Colombia04-Dec-2014genomic DNAsubtype: B12316L,14P,83L,91V,154K,171V,180D,225S,230I
MF190505097Colombia10-Dec-2014genomic DNAsubtype: B12316L,14P,41T,91V,120S,135V,154K,171V,180D
MF190506098Colombia12-Dec-2014genomic DNAsubtype: B12316L,14P,15L,41T,83L,180D,199R
MF190507100Colombia16-Dec-2014genomic DNAsubtype: B123114P,41A,87Q,96I,116T,120S,121T,124T
MF190508103Colombia02-Feb-2015genomic DNAsubtype: B12316L,14P,15L,31N,41T,59I,83L,91A,110N,120S,180D,208G,210S,225S,230I
MF190509104Colombia03-Feb-2015genomic DNAsubtype: B12316L,15L,27I,41T,83T,208G
MF190510106Colombia18-Feb-2015genomic DNAsubtype: B12316L,83L,154K,178T,216S
MF190511108Colombia20-Feb-2015genomic DNAsubtype: B12316M,14P,16T,41T,86A,87Q,91V,96I,116T,120S,180D
MF190512109Colombia23-Feb-2015genomic DNAsubtype: B12316L,83L,91V,123A,154K,171V,180D
MF190513110Colombia23-Feb-2015genomic DNAsubtype: B12046L,44A,50H,83L,91V,93A,120S,124V,180D
MF190514111Colombia23-Feb-2015genomic DNAsubtype: B12316M,14P,15L,16T,41T,83M,120S,180D
MF190515112Colombia23-Feb-2015genomic DNAsubtype: B12316L,83L,91V,154K,180D
MF190516131Colombia10-Dec-2015genomic DNAsubtype: B12316L,14P,44A,83L,116A,123A,180D,205M
MF190517136Colombia26-Feb-2016genomic DNAsubtype: B12316L,14P,15L,91V,96L,148V,180D,199R
MF190518139Colombia08-Mar-2016genomic DNAsubtype: B12316L,27I,83L,91A,120S,148V,179H,180D

Database

Resources

Team