Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Wright (2016)	Influence of Gag-Protease-Mediated Replication Capacity on Disease Progression in Individuals Recently Infected with HIV-1 Subtype C	J. Virol. 85 (8), 3996-4006 (2011)	2.61e-161	73	60	Naive	Plasma	Direct PCR	HLA

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Accession	IsolateName	Country	Coll Date	MolType	Source	Note	FirstAA	LastAA	MutList
HQ696791	AS1-0323_B2	South Africa	07-Jan-2008	genomic DNA	patient AS1-0323 sampled 208 days fromestimated date of infection	subtype: C	1	231	6L,15L,36I,41T,50G,71D,83L,91V,96L,116A,120S,124V,128D,135V,148V,154K,160S,169F,171V,178T,180D,187D,210S,225S
HQ696792	AS1-0703_B2	South Africa	30-Oct-2007	genomic DNA	patient AS1-0703 sampled 49 days fromestimated date of infection	subtype: C	1	231	6L,27I,36I,41T,71D,83L,87P,91V,96L,110N,116A,120H,124V,128D,148V,154K,169F,170R,178T,180D,187D,203R,204G,207Q,208G,225S
HQ696851	AS1-0703_B7	Botswana	15-Oct-2008	genomic DNA	patient AS1-0703 sampled 399 days fromestimated date of infection	subtype: C	1	231	6L,27I,36I,41T,71D,83L,87P,91V,96L,110N,116A,120H,124V,128D,148V,154K,169F,170R,178T,187D,203R,204G,207Q,208G,225S
HQ696793	AS1-0876_B2	South Africa	11-Feb-2008	genomic DNA	patient AS1-0876 sampled 114 days fromestimated date of infection	subtype: C	1	231	6L,27I,41T,71D,116A,120A,124V,148V,154K,169F,177G,178T,187D,199R,200N,203R,208G,210S,225S
HQ696794	AS1-0919_B2	South Africa	18-Dec-2007	genomic DNA	patient AS1-0919 sampled 50 days fromestimated date of infection	subtype: C	1	231	6L,27I,41T,71D,83T,86A,87Q,91V,96I,98D,115V,116T,120A,148V,154K,169F,170R,178T,187D,203R,204G,208G,225S
HQ696852	AS1-0919_B7	Botswana	02-Dec-2008	genomic DNA	patient AS1-0919 sampled 399 days fromestimated date of infection	subtype: C	1	231	6L,27IV,41T,71D,83T,86A,87Q,91V,96I,98D,115IV,116T,120A,148V,154K,169F,170R,178T,187D,203R,204G,208G,225S
HQ696795	AS2-0016_B2	South Africa	11-Jun-2007	genomic DNA	patient AS2-0016 sampled 48 days fromestimated date of infection	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83I,116A,120S,128D,148V,169F,178T,203R,208G
HQ696853	AS2-0016_B8	Botswana	13-Aug-2008	genomic DNA	patient AS2-0016 sampled 477 days fromestimated date of infection	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,116A,120S,128D,148V,169F,178T,203R,208G
HQ696796	AS2-0050_B2	South Africa	22-Aug-2007	genomic DNA	patient AS2-0050 sampled 61 days fromestimated date of infection	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,118I,120S,148V,169F,171V,180D,187D,191I,207S,208G
HQ696798	AS2-0110_B2	South Africa	18-Oct-2007	genomic DNA	patient AS2-0110 sampled 45 days fromestimated date of infection	subtype: C	1	231	6A,14S,27I,41T,71D,83L,115V,116A,120A,128D,148V,154K,169F,178T,187D,200N,203R,208G,210S,225S
HQ696799	AS2-0174_B2	South Africa	28-Feb-2008	genomic DNA	patient AS2-0174 sampled 49 days fromestimated date of infection	subtype: C	1	231	6L,54S,58A,71D,75D,83L,116A,120S,128D,148V,169F,178T,180D,187D,203R,208G,211I
HQ696854	AS2-0174_B8	Botswana	23-Mar-2009	genomic DNA	patient AS2-0174 sampled 438 days fromestimated date of infection	subtype: C	1	231	6L,54S,58A,71D,75D,83L,116A,120S,128D,148V,169F,178T,180D,187D,203R,208G,211I
HQ696800	AS2-0184_B2	South Africa	28-Nov-2007	genomic DNA	patient AS2-0184 sampled 49 days fromestimated date of infection	subtype: C	1	231	6A,27I,41T,50T,71D,91V,116A,120S,135V,148V,154K,169F,178T,180D,187D,207S,208G
HQ696801	AS2-0207_B2	South Africa	23-Apr-2008	genomic DNA	patient AS2-0207 sampled 176 days fromestimated date of infection	subtype: C	1	231	6L,27I,41T,71D,87Q,98D,110N,116A,120S,124V,148V,169F,178T,180D,187D,203R,208G
HQ696802	AS2-0341_B2	South Africa	31-Mar-2008	genomic DNA	patient AS2-0341 sampled 43 days fromestimated date of infection	subtype: C	1	231	6L,14P,27I,31G,41T,45Q,50E,68I,71D,91V,98D,110N,115V,116A,120S,124V,128D,148V,169F,180D,187D,200I,204G,208G
HQ696855	AS2-0341_B7	Botswana	09-Feb-2009	genomic DNA	patient AS2-0341 sampled 357 days fromestimated date of infection	subtype: C	1	231	6L,27I,31G,41T,45Q,50E,68I,71D,91V,98DE,110N,115V,116A,120S,124V,128D,148V,169F,180D,187D,200I,204G,208G
HQ696803	AS2-0358_B2	South Africa	10-Apr-2008	genomic DNA	patient AS2-0358 sampled 45 days fromestimated date of infection	subtype: C	1	231	6L,14P,15L,27I,31N,41T,71D,83L,87HP,91H,92P,95H,116A,128D,148V,169F,178T,187D,200A,203R,204G,208G
HQ696856	AS2-0358_B8	Botswana	06-Apr-2009	genomic DNA	patient AS2-0358 sampled 405 days fromestimated date of infection	subtype: C	1	231	6L,14P,15L,27I,31N,41T,71D,83L,91HN,92P,116A,128D,148V,169F,178T,187D,200A,203R,204G,208G
HQ696804	AS2-0483_B2	South Africa	24-Jun-2008	genomic DNA	patient AS2-0483 sampled 43 days fromestimated date of infection	subtype: C	1	231	6L,27I,31G,33N,41T,71D,83L,87Q,96I,110N,115V,116T,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
HQ696857	AS2-0483_B7	Botswana	25-May-2009	genomic DNA	patient AS2-0483 sampled 378 days fromestimated date of infection	subtype: C	1	231	6L,27I,31G,33N,41T,71D,83L,87Q,96I,110NT,115V,116T,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
HQ696805	AS2-0802_B2	South Africa	28-Oct-2008	genomic DNA	patient AS2-0802 sampled 55 days fromestimated date of infection	subtype: C	1	231	6L,14S,15L,27I,31G,33N,41T,68I,71D,83L,91V,110N,120S,128D,135V,136M,148V,169F,178T,180D,203R,208G,225S
HQ696858	AS2-0802_B8	Botswana	07-Dec-2009	genomic DNA	patient AS2-0802 sampled 459 days fromestimated date of infection	subtype: C	1	231	6L,14C,15L,27I,31G,33N,41T,68I,71D,83L,91V,110N,120S,128D,135V,136M,148V,169F,178T,180D,203R,208G,225S
HQ696806	AS2-0945_B2	South Africa	05-Jan-2009	genomic DNA	patient AS2-0945 sampled 67 days fromestimated date of infection	subtype: C	1	231	6L,27I,41T,44A,50H,83T,91V,100T,102R,116A,120S,128D,148V,154K,169F,171A,177S,178T,187D,203R,208G
HQ696859	AS2-0945_B8	Botswana	24-Feb-2010	genomic DNA	patient AS2-0945 sampled 482 days fromestimated date of infection	subtype: C	1	231	6L,14P,27I,41T,44A,50H,83T,91V,100T,102R,110NSTY,116A,120S,128D,148V,154K,169F,171A,177S,178T,187D,203R,208G,209AS,210ST
HQ696807	AS2-0973_B2	South Africa	05-Jan-2009	genomic DNA	patient AS2-0973 sampled 53 days fromestimated date of infection	subtype: C	1	231	6L,27I,41T,71D,83L,87Q,91V,96I,110N,116Q,120G,128D,148V,169F,178T,180D,187D,203R,208G
HQ696816	AS2-1034_B1	South Africa	19-Oct-2009	genomic DNA	patient AS2-1034	subtype: C	1	231	6L,14S,15L,27I,36I,71D,83L,91V,102NS,116A,128D,148V,169F,171A,178T,180D,191I,207T,208G,209P
HQ696797	AS2-1037_B2	South Africa	23-Feb-2009	genomic DNA	patient AS2-1037 sampled 48 days fromestimated date of infection	subtype: C	1	231	6L,27I,41T,71D,83L,116A,118I,120G,123A,148V,169F,178T,180DE,203R,208G
HQ696860	AS2-1037_B8	Botswana	12-Apr-2010	genomic DNA	patient AS2-1037 sampled 461 days fromestimated date of infection	subtype: C	1	231	6L,27I,41T,71D,83L,116A,118I,120G,123A,148V,169F,171V,178T,180D,203R,208Q
HQ696817	AS2-1325_B2	South Africa	11-Aug-2009	genomic DNA	patient AS2-1325 sampled 112 days fromestimated date of infection	subtype: C	1	231	6L,15L,27I,33NS,36I,41T,71D,83L,91V,96L,116A,124V,128D,148V,169F,178T,180D,187D,203R,208G,210S
HQ696818	AS2-1569_B1	South Africa	15-Oct-2009	genomic DNA	patient AS2-1569 sampled 67 days fromestimated date of infection	subtype: C	1	231	6V,11T,12Y,14S,19I,27I,41T,54L,71D,83T,91V,115V,116A,118I,120G,123A,135V,148V,154K,169F,170KR,178T,180D,187DE,203R,208G,225S
HQ696815	AS2-1630_B2	South Africa	27-Oct-2009	genomic DNA	patient AS2-1630 sampled 61 days fromestimated date of infection	subtype: C	1	231	6A,27I,41T,50S,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
HQ696808	AS3-0017_B2	South Africa	18-Jun-2007	genomic DNA	patient AS3-0017 sampled 49 days fromestimated date of infection	subtype: C	1	231	6L,14T,15L,27I,41T,45D,54S,68I,71D,83L,87Q,91P,96L,116A,120H,128D,148V,154K,169F,171V,178T,200S,225S
HQ696809	AS3-0268_B2	South Africa	20-May-2008	genomic DNA	patient AS3-0268 sampled 51 days fromestimated date of infection	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120G,124V,128D,148V,154K,169F,170R,171V,178T,180D,187D,191T,203R,204G,207Q,208G,225S
HQ696861	AS3-0268_B7	Botswana	07-Apr-2009	genomic DNA	patient AS3-0268 sampled 372 days fromestimated date of infection	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120G,124V,128D,148V,154K,169F,170R,171V,178T,180D,187D,191T,203R,204G,207Q,208G,225S
HQ696810	AS3-0369_B2	South Africa	12-Aug-2008	genomic DNA	patient AS3-0369 sampled 49 days fromestimated date of infection	subtype: C	1	231	6L,27I,36I,41T,71D,83L,91V,96L,110N,116A,124V,128D,148V,154K,169F,180D,187D,203R,208G
HQ696862	AS3-0369_B8	Botswana	06-Oct-2009	genomic DNA	patient AS3-0369 sampled 469 days fromestimated date of infection	subtype: C	1	231	6L,27I,36I,41T,71D,83L,91V,96L,110N,116A,124V,128D,148V,154K,169F,180D,187D,203R,208G
HQ696811	AS3-0458_B2	South Africa	16-Oct-2008	genomic DNA	patient AS3-0458 sampled 43 days fromestimated date of infection	subtype: C	1	231	6L,27I,41T,71D,75D,83L,116A,120S,128D,148V,154K,169F,170R,178T,180D,187D,203R,208G,225S
HQ696863	AS3-0458_B7	Botswana	01-Sep-2009	genomic DNA	patient AS3-0458 sampled 362 days fromestimated date of infection	subtype: C	1	231	6L,27I,41T,71D,75D,83L,116A,120S,128D,148V,154K,169F,170R,178T,187D,203R,208G,225S,229KR
HQ696812	AS3-0513_B2	South Africa	04-Dec-2008	genomic DNA	patient AS3-0513 sampled 58 days fromestimated date of infection	subtype: C	1	231	6L,27I,41T,45D,54S,68I,71D,83L,87P,91V,96I,98D,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,211V,225S
HQ696814	AS3-0759_B2	South Africa	21-Jul-2009	genomic DNA	patient AS3-0759 sampled 35 days fromestimated date of infection	subtype: C	1	231	6L,27I,41T,45D,54S,71D,83L,87Q,116A,148V,169F,178T,187D,200N,203R,208G
HQ696813	AS3-0767_B1	South Africa	19-Nov-2009	genomic DNA	patient AS3-0767	subtype: C	1	231	6L,15L,27I,41T,71D,83L,86I,87P,91L,96L,98D,116T,120A,123A,148V,154K,169F,178T,187D,203R,208G,210S,225S
HQ696819	AS5-0508_B1	South Africa	17-Nov-2009	genomic DNA	patient AS5-0508	subtype: C	1	231	6A,16T,27I,41T,68I,71D,83L,91V,96I,110N,116T,120S,128D,136LP,148V,154K,169F,178T,180D,187D,203R,208G,217S,225S
HQ696822	AS5-0548_B2	South Africa	16-Sep-2009	genomic DNA	patient AS5-0548 sampled 41 days fromestimated date of infection	subtype: C	1	231	14P,15L,27I,31N,41T,71D,83L,91V,110N,116A,120S,128D,148V,169F,178T,203R,204S,208G,210S
HQ696820	AS5-0643_B2	South Africa	04-Nov-2009	genomic DNA	patient AS5-0643 sampled 40 days fromestimated date of infection	subtype: C	1	231	6L,27I,31G,41T,50G,59I,71D,83L,110S,128D,135V,148V,154K,169F,178T,180D,203R,210S,225S
HQ696821	AS5-0710_B1	South Africa	03-Dec-2009	genomic DNA	patient AS5-0710 sampled 87 days fromestimated date of infection	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,118I,120G,148V,169F,178T,187D,199R,208G,210S
HQ696823	B_010	Botswana	30-Aug-2005	genomic DNA	patient B sampled 10 days fromestimated seroconversion	subtype: C	1	231	6L,14P,15L,31G,33N,71D,83L,91V,110N,112A,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
HQ696824	C_004	Botswana	07-Dec-2005	genomic DNA	patient C sampled 4 days from estimatedseroconversion	subtype: C	1	231	6L,15L,27I,47C,71D,83L,110N,116A,120S,128D,148V,154K,169F,187D,203R,208G,210S
HQ696825	D_006	Botswana	14-Nov-2006	genomic DNA	patient D sampled 6 days from estimatedseroconversion	subtype: C	1	231	6L,15M,41T,50S,54S,58A,75D,91A,116A,120S,128D,135V,148V,154K,160S,169F,177S,178T,187D,203R,208G,225S
HQ696826	F_007	Botswana	11-Apr-2006	genomic DNA	patient F sampled 7 days from estimatedseroconversion	subtype: C	1	231	6L,14S,15L,16T,27I,41T,50T,71D,83L,91V,116A,120S,124V,128D,136M,148V,154K,169F,170R,178T,180D,187D,203R,204G,207Q,208G,210S,225S
HQ696827	G_004	Botswana	30-Jun-2006	genomic DNA	patient G sampled 4 days from estimatedseroconversion	subtype: C	1	231	6L,14N,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
HQ696828	H_011	Botswana	05-Jun-2007	genomic DNA	patient H sampled 11 days fromestimated seroconversion	subtype: C	1	231	6L,15L,27I,41T,71D,83T,91V,92V,116N,120S,124V,128D,148V,169F,178T,183H,203R,208G,225S
HQ696829	NA_169	Botswana	16-Nov-2004	genomic DNA	patient NA sampled 169 days fromestimated seroconversion	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,118I,120S,128D,148V,154K,169F,178T,187D,199R,200N,208G,225S
HQ696830	OC_055	Botswana	15-Mar-2005	genomic DNA	patient OC sampled 55 days fromestimated seroconversion	subtype: C	1	231	6L,27I,41T,71D,83L,110N,116A,120S,128D,148V,154K,169F,177S,187D,203R,208G,210S
HQ696831	OE_052	Botswana	24-May-2005	genomic DNA	patient OE sampled 52 days fromestimated seroconversion	subtype: C	1	231	6L,27I,71D,83L,107ST,116A,120GS,124V,128D,136LM,148V,154K,169F,178T,187D,203R,208G,211I
HQ696832	OG_044	Botswana	27-Jun-2005	genomic DNA	patient OG sampled 44 days fromestimated seroconversion	subtype: C	1	231	6L,27I,36I,41T,71D,83L,91A,116AG,120S,128D,148V,154K,169F,178T,180DE,183HN,187D,191I,200I,204G,207Q,208G,210S,225S
HQ696833	OJ_044	Botswana	04-Aug-2005	genomic DNA	patient OJ sampled 44 days fromestimated seroconversion	subtype: C	1	231	2V,6L,15L,27I,41T,50S,71D,96I,116T,128D,148V,169F,178T,187D,203R,208G,225S
HQ696834	OQ_052	Botswana	27-Sep-2005	genomic DNA	patient OQ sampled 52 days fromestimated seroconversion	subtype: C	1	231	6A,14T,15L,27I,41T,50S,71D,83L,116A,120S,128D,148V,154K,169F,178T,180D,187D,207S,208G
HQ696835	OS_062	Botswana	14-Oct-2005	genomic DNA	patient OS sampled 62 days fromestimated seroconversion	subtype: C	1	231	6L,15L,41T,71D,91V,116A,120S,124V,128D,148V,154K,169F,177C,178T,179H,187D,203R,204G,208G
HQ696836	OU_013	Botswana	17-Oct-2005	genomic DNA	patient OU sampled 13 days fromestimated seroconversion	subtype: C	1	231	6L,31G,33N,71D,83L,91V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
HQ696837	OW_013	Botswana	16-Nov-2005	genomic DNA	patient OW sampled 13 days fromestimated seroconversion	subtype: C	1	231	6L,27I,41T,71D,87Q,91V,98D,116A,120S,124V,128D,148V,169F,178T,187D,203R,208G
HQ696838	OX_058	Botswana	18-Nov-2005	genomic DNA	patient OX sampled 58 days fromestimated seroconversion	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,110N,116A,120G,124V,148V,154K,169F,171V,178T,180D,225A
HQ696839	OZ_078	Botswana	29-Nov-2005	genomic DNA	patient OZ sampled 78 days fromestimated seroconversion	subtype: C	1	231	6L,27I,36I,41T,71D,83M,116A,120S,124V,128D,148V,169F,180D,187D,203R,208G,225S
HQ696840	PA_065	Botswana	11-Jan-2006	genomic DNA	patient PA sampled 65 days fromestimated seroconversion	subtype: C	1	231	6A,14P,27I,41T,71D,83L,110N,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
HQ696841	PD_059	Botswana	12-Apr-2006	genomic DNA	patient PD sampled 59 days fromestimated seroconversion	subtype: C	1	231	6L,15L,27I,41T,71D,91V,110N,116A,120G,124V,148V,154K,169F,171V,178T,180D,187D,210S,225S
HQ696842	PP_044	Botswana	15-Dec-2006	genomic DNA	patient PP sampled 44 days fromestimated seroconversion	subtype: C	1	231	6L,27I,31G,33N,41T,71D,83L,91L,95H,107A,110N,115V,116A,120S,128D,148V,154K,169F,178T,183NS,187D,203R,208G,225S
HQ696843	QA_006	Botswana	11-Jan-2007	genomic DNA	patient QA sampled 6 days fromestimated seroconversion	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,191I,207T,208G
HQ696844	QC_080	Botswana	02-May-2007	genomic DNA	patient QC sampled 80 days fromestimated seroconversion	subtype: C	1	231	6M,15L,27I,41T,50T,71D,83L,86A,91A,92P,93A,116A,120G,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
HQ696845	QI_020	Botswana	18-Jul-2007	genomic DNA	patient QI sampled 20 days fromestimated seroconversion	subtype: C	1	231	6L,27I,41T,71D,83L,91A,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
HQ696846	QP_048	Botswana	03-Sep-2007	genomic DNA	patient QP sampled 48 days fromestimated seroconversion	subtype: C	1	231	6L,15L,31G,33N,71D,83L,91V,110N,111H,116A,118I,120G,148V,154K,169F,178T,183G,187D,191A,203R,208G,225S
HQ696847	QT_044	Botswana	22-Oct-2007	genomic DNA	patient QT sampled 44 days fromestimated seroconversion	subtype: C	1	231	6L,27I,41T,71D,83L,87P,91V,96I,98D,116T,120S,128D,136M,148V,154K,169F,178T,180D,187D,200I,203R,204G,208G,225S
HQ696848	QU_084	Botswana	23-Oct-2007	genomic DNA	patient QU sampled 84 days fromestimated seroconversion	subtype: C	1	231	6L,15L,16A,27I,41T,71D,83L,87Q,91V,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G,225S
HQ696849	RA_054	Botswana	07-Feb-2008	genomic DNA	patient RA sampled 54 days fromestimated seroconversion	subtype: C	1	231	6L,27I,41T,50T,71D,83L,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
HQ696850	RB_052	Botswana	20-Feb-2008	genomic DNA	patient RB sampled 52 days fromestimated seroconversion	subtype: C	1	231	27I,41T,71D,75D,83M,91V,96I,116T,120S,128D,136M,148V,169F,178T,187D,203R,208G,210S,225S

Genbank References: capsid (p24)

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