<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Brown (2016) Biologic and genetic characterization of a panel of 60 human immunodeficiency virus type 1 isolates, representing clades A, B, C, D, CRF01_AE, and CRF02_AG, for the development and assessment of candidate vaccines J. Virol. 79 (10), 6089-6101 (2005) 1.99e-153 21          

Download sequences

AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
AY71341702ET_288Ethiopiagenomic DNAco-cultured PBMC passage 2originally derived from blood donor volunteer (code411);subtype: C12316L,14S,15L,27I,36I,41T,71D,83I,92Q,116A,120S,128D,148V,169F,178T,180D,203R,208G,210S
AY71340985US_Ba-LUSAgenomic DNAco-cultured PBMC after multiplepassagesoriginally derived from seropositive individual;subtype: B12316L,83L,87Q,91V,96I,98D,120S,225S,230I
AY71341589SM_145Somaliagenomic DNAco-cultured PBMC passage 1 of Cat. No.7697 (AIDS Research and Reference Reagent Program, NIAID,NIH)subtype: C12316L,27I,36I,41T,71D,83L,87Q,91V,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
AY71341690SE_364Senegalgenomic DNAco-cultured PBMC passage 1 of Cat. No.7696 (AIDS Research and Reference Reagent Program, NIAID,NIH)subtype: C12316L,14P,15L,27I,31G,33N,41T,71D,83L,91V,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,207A,208G,225S
AY71342590TH_CM244Thailandgenomic DNAco-cultured PBMC after multiplepassagesoriginally derived from seropositive individual;subtype: CRF01_AE12316A,14P,15L,31G,33N,54M,58I,92P,128D,148V,178T,200S,207T,208G,225S
AY71341290US_873USAgenomic DNAco-cultured PBMC after multiplepassagesoriginally derived from seropositive individual;subtype: B12316L,15L,83L,87Q,136M
AY71341192FR_BX08Francegenomic DNAco-cultured PBMC after multiplepassagesoriginally derived from seropositive individual;subtype: B123171D,83L,87Q,96I,98DE,120R,128D,136M,154K,180D
AY71340792UG_029Ugandagenomic DNAco-cultured PBMC passage 1 of Cat. No.1650 (AIDS Research and Reference Reagent Program, NIAID,NIH)originally derived from seropositive individual;subtype: A12316A,12Y,15V,16T,27I,30R,54M,58I,71D,83L,86A,87Q,91V,96L,98D,111P,120G,128D,148V,169F,183G,200S,207T,208G,225S,230I
AY71341393MW_965Malawigenomic DNAco-cultured PBMC passage 1 of Cat. No.2913 (AIDS Research and Reference Reagent Program, NIAID,NIH)originally derived from seropositive individual;subtype: C12316H,27I,41T,71D,83L,116A,128D,148V,154K,169F,177S,178T,187D,200N,203R,207S,208G,225S
AY71340693RW_024Rwandagenomic DNAco-cultured PBMC passage 1 of Cat. No.2200 (AIDS Research and Reference Reagent Program, NIAID,NIH)originally derived from seropositive individual;subtype: A12316A,14P,15L,27I,54M,58V,71D,83L,92P,111P,120G,128D,148V,154K,169F,178T,183G,200S,203R,208G,210S,225S
AY71341893UG_065Ugandagenomic DNAco-cultured PBMC passage 1 of Cat. No.1952 (AIDS Research and Reference Reagent Program, NIAID,NIH)originally derived from seropositive individual;subtype: D12316L,27I,75D,83L,91V,96L,148V,180D
AY71341494IN_20635-4Indiagenomic DNAco-cultured PBMC passage 1 of Cat. No.4648 (AIDS Research and Reference Reagent Program, NIAID,NIH)originally derived from seropositive individual;subtype: C12316L,15L,27I,41T,71D,75D,83L,87P,110N,116A,120A,124V,148V,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
AY71341094US_33931NUSAgenomic DNAco-cultured PBMC passage 2originally derived from seropositive individual;subtype: B12316L,31S,41A,128D,132K,136I,139H,199R
AY71342496TH_M02138Thailandgenomic DNAco-cultured PBMC passage 2originally derived from seropositive individual;subtype: CRF01_AE12316T,14P,15L,31G,33N,54M,58I,92P,128D,148V,178T,200S,207T,208G,225S
AY71342196TH_NI1046Thailandgenomic DNAco-cultured PBMC after multiplepassagesoriginally derived from seropositive individual;subtype: CRF01_AE12316A,14P,15L,31G,33N,54M,58I,92P,128D,148V,178T,200S,207T,208G,225S
AY71342696TH_NI1149Thailandgenomic DNAco-cultured PBMC after multiplepassagesoriginally derived from seroconverter;subtype: CRF01_AE12316A,9H,14P,15M,16T,27M,31G,33K,54M,58I,79D,92P,120S,146N,148V,178T,200S,207T,208G,225S
AY71340896TH_NP1538Thailandgenomic DNAco-cultured PBMC after multiplepassagesoriginally derived from seropositive individual;subtype: B12316L,15L,83L,91V,96L,148V,180D,225S,230I
AY71342097TH_NP1525Thailandgenomic DNAco-cultured PBMC after multiplepassagesoriginally derived from seropositive individual;subtype: CRF01_AE12316A,11A,15L,31G,33N,54M,58I,92P,128D,148V,178T,200S,207T,208G,225S
AY71341997TH_NP1695Thailandgenomic DNAco-cultured PBMC after multiplepassagesoriginally derived from seropositive individual;subtype: CRF01_AE12316A,14S,15L,31G,33N,54M,58I,92P,120S,128D,200S,207T,208G,225S
AY71342298TH_NP1251Thailandgenomic DNAco-cultured PBMC after multiplepassagesoriginally derived from seropositive individual;subtype: CRF01_AE12316A,14S,15L,31G,33N,54M,58I,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
AY71342399TH_NI1052Thailandgenomic DNAco-cultured PBMC after multiplepassagesoriginally derived from seroconverter;subtype: CRF01_AE12316A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,200S,207T,208G,210S,225S

Database

Resources

Team