Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Sanchez-Merino (2005)	HIV-1-specific CD8+ T cell responses and viral evolution in women and infants	J. Immunol. 175 (10), 6976-6986 (2005)	7.28e-169	190	10	Naive	Plasma?	Molecular clones	HLA

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Accession	Country	Clone	MolType	FirstAA	LastAA	MutList
AY786790	USA	1M-1001	genomic RNA	1	231	83L,87Q,96I,98D,116A,134T,148S
AY786791	USA	8M-1001	genomic RNA	1	231	79G,83L,87Q,96I,98D,116A,148S,182T,195S,196A,212G,228V
AY786792	USA	4M-1001	genomic RNA	1	231	83L,86A,87Q,96I,116T,148S
AY786793	USA	9M-1001	genomic RNA	1	231	83L,86A,87Q,96I,116T,121S,148S
AY786794	USA	6M-1001	genomic RNA	1	231	23R,83L,87Q,96I,98D,116A,147H,148S
AY786795	USA	2M-1001	genomic RNA	1	231	83L,86A,87Q,96I,116T,131R,148S
AY786796	USA	7M-1001	genomic RNA	1	231	83L,86A,87Q,96I,116T,148S
AY786797	USA	5M-1001	genomic RNA	1	231	83L,87Q,96I,98D,116A,148S
AY786798	USA	3M-1001	genomic RNA	1	231	83L,86A,87Q,96I,116T,148S
AY786799	USA	10M-1001	genomic RNA	1	231	83L,86A,87Q,96I,105T,116T,148S,172P,212G
AY786800	USA	5P-1024	genomic RNA	1	231	83L,87Q,96I,98D,116A,148S
AY786801	USA	3P-1024	genomic RNA	1	231	83L,87Q,96I,98D,116A,148S,165A
AY786802	USA	4P-1024	genomic RNA	1	231	83L,87Q,96I,98D,116A,131E,145C,148S,192R,200A
AY786803	USA	9P-1024	genomic RNA	1	231	33N,83L,87Q,96I,98D,116A,148S,199R
AY786804	USA	8P-1024	genomic RNA	1	231	58A,83L,87Q,96I,98D,116A,148S,190S
AY786805	USA	6P-1024	genomic RNA	1	231	83L,87Q,96I,98D,111P,116A,117R,148S
AY786806	USA	1P-1024	genomic RNA	1	231	76G,83L,87Q,96I,97G,98D,116A,148S
AY786807	USA	7P-1024	genomic RNA	1	231	47D,62R,83L,87Q,96I,98D,116A,148S
AY786808	USA	2P-1024	genomic RNA	1	231	11A,83L,87Q,96I,98D,113G,116A,148S,230A
AY786809	USA	10P-1024	genomic RNA	1	231	83L,87Q,96I,98D,116A,148P,202S
AY786810	USA	5BP-1024	genomic RNA	1	231	83L,87Q,96I,98D,115M,116A,148S
AY786811	USA	7BP-1024	genomic RNA	1	231	83L,87Q,96I,98D,116A,148S
AY786812	USA	4BP-1024	genomic RNA	1	231	6T,83L,87Q,96I,98D,116A,127R,148S,187G,218R
AY786813	USA	3BP-1024	genomic RNA	1	231	10V,83L,87Q,96I,98D,116A,148S
AY786814	USA	2BP-1024	genomic RNA	1	231	6V,83L,87Q,96I,98D,116A,148S
AY786815	USA	8BP-1024	genomic RNA	1	231	83L,87Q,96I,98D,114R,116A,148S,199E
AY786816	USA	9BP-1024	genomic RNA	1	231	83L,87Q,96I,98D,111P,116A,148S
AY786817	USA	1BP-1024	genomic RNA	1	231	5S,83L,87Q,96I,98D,116A,148S,201V
AY786818	USA	10BP-1024	genomic RNA	1	231	83L,87Q,96I,98D,116A,148S
AY786819	USA	6BP-1024	genomic RNA	1	231	83L,87Q,96I,98V,116A,117R,148S
AY786820	USA	5CP-1024	genomic RNA	1	231	83L,87Q,96I,98D,116A,148S,197G,204T
AY786821	USA	10CP-1024	genomic RNA	1	231	83L,87Q,96I,98D,116A,148S
AY786822	USA	9CP-1024	genomic RNA	1	231	83L,87Q,96I,98D,116A,148S
AY786823	USA	8CP-1024	genomic RNA	1	231	83L,87Q,96I,98D,116A,148S
AY786824	USA	6CP-1024	genomic RNA	1	231	83L,87Q,96I,98D,116A,148S,208G
AY786825	USA	3CP-1024	genomic RNA	1	231	83L,87Q,95R,96I,98D,116A,148S
AY786826	USA	2CP-1024	genomic RNA	1	231	72A,83L,87Q,96I,98D,107S,116T,148S
AY786827	USA	4CP-1024	genomic RNA	1	231	83L,87Q,91V,96I,98D,116A,148S
AY786828	USA	7CP-1024	genomic RNA	1	231	83L,87Q,96I,98D,116A,148S
AY786829	USA	1CP-1024	genomic RNA	1	231	83L,87Q,96I,98D,116A,148S,230I
AY786830	USA	11M-1002	genomic RNA	1	231	6L,83L,154K,180D
AY786831	USA	9M-1002	genomic RNA	1	231	6L,37V,83L,133R,154K,180D
AY786832	USA	7M-1002	genomic RNA	1	231	6L,83L,154K,180D
AY786833	USA	4M-1002	genomic RNA	1	231	6L,54I,83L,134T,154K,180D
AY786834	USA	3M-1002	genomic RNA	1	231	6L,83L,154K,176R,180D,200A
AY786835	USA	2M-1002	genomic RNA	1	231	6L,83L,154K,180D
AY786836	USA	1M-1002	genomic RNA	1	231	6L,83L,154K,180D
AY786837	USA	10M-1002	genomic RNA	1	231	6L,25N,83L,154K,180D
AY786838	USA	6M-1002	genomic RNA	1	231	6L,83L,154K,180D
AY786839	USA	5M-1002	genomic RNA	1	231	6L,83L,154K,180D,211Q
AY786840	USA	7P-1031	genomic RNA	1	231	6L,83L,154K,180D,212G
AY786841	USA	1P-1031	genomic RNA	1	231	6L,83L,132S,154K,180D
AY786842	USA	5P-1031	genomic RNA	1	231	6L,83L,85A,154K,180D
AY786843	USA	12P-1031	genomic RNA	1	231	6L,83L,154K,180D
AY786844	USA	2P-1031	genomic RNA	1	231	6L,82G,83L,154K,180D
AY786845	USA	3P-1031	genomic RNA	1	231	6L,19A,83L,91T,128G,154K,180D
AY786846	USA	9P-1031	genomic RNA	1	231	6L,47T,83L,154K,180D
AY786847	USA	4P-1031	genomic RNA	1	231	6L,83L,85A,154K,180D
AY786848	USA	8P-1031	genomic RNA	1	231	6L,83L,154K,180D,216I
AY786849	USA	6P-1031	genomic RNA	1	231	6L,83P,154K,180D
AY786850	USA	2BP-1031	genomic RNA	1	231	6L,83L,139S,154K,168S,180D,205S
AY786851	USA	12BP-1031	genomic RNA	1	231	6L,83L,154K,180D
AY786852	USA	3BP-1031	genomic RNA	1	231	6L,83L,154K,180D
AY786853	USA	5BP-1031	genomic RNA	1	231	6L,23R,83L,153V,154K,180D
AY786854	USA	6BP-1031	genomic RNA	1	231	6L,83L,154K,170R,180D
AY786855	USA	4BP-1031	genomic RNA	1	231	6L,83L,154K,180D,191A,224L
AY786856	USA	7BP-1031	genomic RNA	1	231	6L,40S,83L,153V,154K,180D,201T
AY786857	USA	10BP-1031	genomic RNA	1	231	6L,45G,83L,154K,180D
AY786858	USA	11BP-1031	genomic RNA	1	231	6L,83L,106A,145C,154K,180D
AY786859	USA	9BP-1031	genomic RNA	1	231	6L,39V,55K,83L,139S,154K,180D
AY786860	USA	5CP-1031	genomic RNA	1	231	6L,83L,154K,180D,188A,213G
AY786861	USA	1CP-1031	genomic RNA	1	231	6L,83L,154K,180D
AY786862	USA	2CP-1031	genomic RNA	1	231	6L,83L,115M,154K,167Q,180D,195D
AY786863	USA	3CP-1031	genomic RNA	1	231	6L,83L,136P,154K,180D
AY786864	USA	4CP-1031	genomic RNA	1	231	6L,83L,97G,154K,180D,183S
AY786865	USA	8CP-1031	genomic RNA	1	231	6L,83L,154K,180D
AY786866	USA	9CP-1031	genomic RNA	1	231	6L,83L,154K,180D
AY786867	USA	6CP-1031	genomic RNA	1	231	6L,83L,154K,180D,210A
AY786868	USA	7CP-1031	genomic RNA	1	231	6L,83L,154K,168S,180D
AY786869	USA	10CP-1031	genomic RNA	1	231	6L,83L,118V,154K,180D
AY786870	USA	1M-1003	genomic RNA	1	231	6L,14T,27I,83L,91V,120S,148V,180D
AY786871	USA	3M-1003	genomic RNA	1	231	6L,14T,27I,83L,91V,120S,148V,180D
AY786872	USA	10M-1003	genomic RNA	1	231	6L,14T,27I,83L,91V,113G,120S,148V,180D,204V
AY786873	USA	8M-1003	genomic RNA	1	231	6L,14T,27I,83L,91V,120S,148V,180D
AY786874	USA	5M-1003	genomic RNA	1	231	6L,14T,27I,83L,91V,120S,148V,180D,212K
AY786875	USA	7M-1003	genomic RNA	1	231	6L,14T,27I,83L,91V,120S,123L,148V,180D
AY786876	USA	4M-1003	genomic RNA	1	231	6L,14T,27I,83L,91V,120S,148V,180D
AY786877	USA	9M-1003	genomic RNA	1	231	6L,14T,27I,83L,91V,120S,148V,180D
AY786878	USA	6M-1003	genomic RNA	1	231	6L,14T,27I,83L,91V,120S,148V,180D
AY786879	USA	2M-1003	genomic RNA	1	231	6L,14T,27I,83L,91V,120S,148V,180D
AY786880	USA	1P-1189	genomic RNA	1	231	6L,14T,27I,83L,91V,118T,120S,148V,166G,180D
AY786881	USA	5P-1189	genomic RNA	1	231	6L,15L,26A,27I,83L,91V,120S,148I,180D
AY786882	USA	2P-1189	genomic RNA	1	231	5D,6L,14T,27I,80*,83L,91V,120S,148V,180D
AY786883	USA	9P-1189	genomic RNA	1	231	6L,14T,27I,83L,91V,120S,148I,180D
AY786884	USA	8P-1189	genomic RNA	1	231	6L,15L,27I,41T,83L,91V,120S,148V,180D
AY786885	USA	3P-1189	genomic RNA	1	231	6L,14T,27I,83L,91V,102G,120S,148V,180D
AY786886	USA	4P-1189	genomic RNA	1	231	6L,15L,27I,41T,83L,91V,120S,148V,180D
AY786887	USA	10P-1189	genomic RNA	1	231	6L,15L,27I,41T,62R,83L,91V,120S,148V,180D
AY786888	USA	7P-1189	genomic RNA	1	231	6L,13R,14T,27I,83L,91V,115M,120S,148V,180D
AY786889	USA	6P-1189	genomic RNA	1	231	6L,14T,27I,83L,91V,120S,141T,148I,180D,185I
AY786890	USA	1BP-1189	genomic RNA	1	231	6L,14T,27I,83L,91V,120S,148V,180D
AY786891	USA	3BP-1189	genomic RNA	1	231	6L,14T,27I,83L,91V,120S,148V,180D
AY786892	USA	4BP-1189	genomic RNA	1	231	6L,14T,27I,83S,91V,100G,120S,148V,180D
AY786893	USA	9BP-1189	genomic RNA	1	231	6L,14T,27I,52S,83L,91V,120S,147L,148V,180D
AY786894	USA	7BP-1189	genomic RNA	1	231	6L,14T,27I,83L,91V,120S,148V,180D
AY786895	USA	5BP-1189	genomic RNA	1	231	6L,14T,27I,83L,91V,120S,148V,180D
AY786896	USA	8BP-1189	genomic RNA	1	231	6L,14T,27I,83L,91V,105V,120S,135T,148V,180D
AY786897	USA	6BP-1189	genomic RNA	1	231	6L,14T,27I,83L,91V,120S,148V,180D
AY786898	USA	10BP-1189	genomic RNA	1	231	6L,14T,27I,77T,83L,91V,120S,148V,180D
AY786899	USA	2BP-1189	genomic RNA	1	231	6L,14T,27I,83L,91V,120S,148V,180D
AY786900	USA	8CP-1189	genomic RNA	1	231	6L,15L,27I,83L,86A,91V,120S,148V,180D,199R
AY786901	USA	5CP-1189	genomic RNA	1	231	6L,15L,27I,83L,91V,120S,148V,180D
AY786902	USA	1CP-1189	genomic RNA	1	231	6L,11A,12R,14T,27I,83L,91V,116*,120S,148V,180D
AY786903	USA	3CP-1189	genomic RNA	1	231	6L,14T,27I,83L,91V,120S,124T,148V,180D
AY786904	USA	6CP-1189	genomic RNA	1	231	6L,14T,21D,27I,83L,91V,120S,148V,180D
AY786905	USA	9CP-1189	genomic RNA	1	231	6L,14T,27I,83L,91V,120S,148V,180D
AY786906	USA	2CP-1189	genomic RNA	1	231	6L,14T,27I,83L,91V,120S,148V,180D
AY786907	USA	4CP-1189	genomic RNA	1	231	6L,15L,27I,83L,91V,120S,131R,148V,180D
AY786908	USA	10CP-1189	genomic RNA	1	231	6L,14T,27I,83L,91V,120S,148V,180D
AY786909	USA	7CP-1189	genomic RNA	1	231	6L,15L,27I,83L,91V,120S,148V,180D
AY786910	USA	9M-1004	genomic RNA	1	231	15L,18K,83L,87Q,91V,120H,127E,128K,137E,148V,180D,213K,230I
AY786911	USA	2M-1004	genomic RNA	1	231	15L,83L,87Q,91V,120H,148V,180D,230I
AY786912	USA	8M-1004	genomic RNA	1	231	15L,83L,87Q,91V,120H,148V,180D,230I
AY786913	USA	4M-1004	genomic RNA	1	231	15L,83L,87Q,91V,120H,148V,180D,230I
AY786914	USA	10M-1004	genomic RNA	1	231	15L,50*,83L,91V,120H,148V,180D,230I
AY786915	USA	13M-1004	genomic RNA	1	231	15L,83L,87Q,91V,120H,148V,180D,230I
AY786916	USA	12M-1004	genomic RNA	1	231	15L,83L,91V,105V,120H,148V,180D,230I
AY786917	USA	3M-1004	genomic RNA	1	231	15L,58A,83L,91V,120H,148V,180D,230I
AY786918	USA	6M-1004	genomic RNA	1	231	15L,83L,91V,120H,141V,148V,180D,194V,230I
AY786919	USA	7M-1004	genomic RNA	1	231	15L,45G,83L,91V,97G,120H,148V,180D,230I
AY786920	USA	8P-1115	genomic RNA	1	231	15L,81G,83L,91V,120H,148V,180D,230I
AY786921	USA	2P-1115	genomic RNA	1	231	15L,25E,83L,91V,120H,148V,180D,215V,230I
AY786922	USA	9P-1115	genomic RNA	1	231	15L,22V,51G,83L,91V,120H,148V,164S,180D,230I
AY786923	USA	4P-1115	genomic RNA	1	231	15L,83L,91V,118T,120H,148V,180D,230I
AY786924	USA	6P-1115	genomic RNA	1	231	5D,15L,83L,91V,120H,148V,180D,230I
AY786925	USA	3P-1115	genomic RNA	1	231	15L,83L,91V,120H,148V,180D,230I
AY786926	USA	14P-1115	genomic RNA	1	231	15L,83L,91V,120H,148V,180D,230I
AY786927	USA	7P-1115	genomic RNA	1	231	15L,83L,91V,113D,120H,148V,180D,230I
AY786928	USA	5P-1115	genomic RNA	1	231	15L,30E,83L,91V,120H,148V,180D,230I
AY786929	USA	10P-1115	genomic RNA	1	231	15L,83L,91V,120H,125S,148V,180D,230I
AY786930	USA	12BP-1115	genomic RNA	1	231	15L,83L,91V,120H,148V,180D,230I
AY786931	USA	6BP-1115	genomic RNA	1	231	15L,83L,91V,120H,148V,180D,230I
AY786932	USA	7BP-1115	genomic RNA	1	231	15L,83L,91V,120H,145H,146G,148V,180D,230I
AY786933	USA	11BP-1115	genomic RNA	1	231	15L,83L,91V,120H,148V,180D,230I
AY786934	USA	14BP-1115	genomic RNA	1	231	2T,15L,83L,91V,120H,148V,163G,180D,230I
AY786935	USA	2BP-1115	genomic RNA	1	231	15L,70E,83L,91V,120H,148V,180D,230I
AY786936	USA	8BP-1115	genomic RNA	1	231	15L,83L,91V,120H,148V,180D,230I
AY786937	USA	4BP-1115	genomic RNA	1	231	15L,83L,91V,120H,148V,180D,230I
AY786938	USA	3BP-1115	genomic RNA	1	231	15L,83L,91V,120H,144T,148V,166G,180D,230I
AY786939	USA	13BP-1115	genomic RNA	1	231	15L,71K,83L,91V,120Y,148V,180D,182E,230I
AY786940	USA	13CP-1115	genomic RNA	1	231	15L,83L,91V,100G,120H,148V,180D,230I
AY786941	USA	4CP-1115	genomic RNA	1	231	15L,31T,83L,91V,120H,148V,180D,225S,230I
AY786942	USA	8CP-1115	genomic RNA	1	231	15L,66V,75G,83L,91V,120H,148V,180G,230I
AY786943	USA	14CP-1115	genomic RNA	1	231	15L,83L,91V,120H,148V,180D,225S,230I
AY786944	USA	1CP-1115	genomic RNA	1	231	15L,83L,91V,120H,148V,180D,225S,230I
AY786945	USA	3CP-1115	genomic RNA	1	231	15L,71G,83L,91V,120H,148V,180D,230I
AY786946	USA	10CP-1115	genomic RNA	1	231	15L,83L,91V,120H,148V,180D,230I
AY786947	USA	9CP-1115	genomic RNA	1	231	15L,83L,91V,120H,148V,180D,230I
AY786948	USA	5CP-1115	genomic RNA	1	231	15L,53S,83L,91V,120H,148V,180D,206R,225S,230I
AY786949	USA	12CP-1115	genomic RNA	1	231	15L,83L,86A,91V,120H,148V,180D,225S,230I
AY786950	USA	8M-1005	genomic RNA	1	231	6A,14S,83L,116T,153T,154K,180D
AY786951	USA	5M-1005	genomic RNA	1	231	6A,7R,14S,83L,116T,154K,180D
AY786952	USA	1M-1005	genomic RNA	1	231	6M,83L,154K,178T,200A
AY786953	USA	10M-1005	genomic RNA	1	231	6A,14S,83L,116T,154K,180D
AY786954	USA	9M-1005	genomic RNA	1	231	6A,14S,66L,83L,116T,154K,180D
AY786955	USA	3M-1005	genomic RNA	1	231	6A,14S,83L,116T,154K,180D
AY786956	USA	2M-1005	genomic RNA	1	231	6A,14S,83L,116T,117*,154K,180D
AY786957	USA	4M-1005	genomic RNA	1	231	6A,14S,83L,116T,154K,180D
AY786958	USA	7M-1005	genomic RNA	1	231	6A,14S,83L,116T,154K,180D
AY786959	USA	6M-1005	genomic RNA	1	231	6A,14S,83L,116T,154K,180D
AY786960	USA	4P-1026	genomic RNA	1	231	6A,14S,83L,116T,134V,154K,180D,195S,198R
AY786961	USA	5P-1026	genomic RNA	1	231	6A,14S,83L,116T,154K,180D,184*,195D
AY786962	USA	1P-1026	genomic RNA	1	231	6M,79D,83L,154K,195H
AY786963	USA	9P-1026	genomic RNA	1	231	6A,14S,83L,116T,154K,180D,189V
AY786964	USA	13P-1026	genomic RNA	1	231	6A,14S,83L,116T,154K,180D
AY786965	USA	7P-1026	genomic RNA	1	231	6A,14S,83L,116T,154K,159G,180D,228T
AY786966	USA	15P-1026	genomic RNA	1	231	6A,10T,14S,83L,116T,146G,154K,176LPQR,180D,183X,184LW
AY786967	USA	10P-1026	genomic RNA	1	231	6A,14S,83L,116T,154K,180D
AY786968	USA	11P-1026	genomic RNA	1	231	6A,14S,57S,83L,116T,154K,164F,180D
AY786969	USA	16P-1026	genomic RNA	1	231	6A,14S,83L,116T,154K,180D,183X,184LW
AY786970	USA	3CP-1026	genomic RNA	1	231	6A,14S,32L,83L,113G,116A,154K,180D
AY786971	USA	1CP-1026	genomic RNA	1	231	6A,14S,83L,116A,154K,180D
AY786972	USA	11CP-1026	genomic RNA	1	231	6A,14S,39V,64V,83L,106R,116A,154K,180D
AY786973	USA	7CP-1026	genomic RNA	1	231	6A,14S,83L,116A,154K,180D
AY786974	USA	4CP-1026	genomic RNA	1	231	6A,14S,61R,83L,116A,154K,180D
AY786975	USA	2CP-1026	genomic RNA	1	231	6A,14S,83L,116A,154K,180D
AY786976	USA	6CP-1026	genomic RNA	1	231	6A,14S,61R,83L,116A,154K,180D
AY786977	USA	9CP-1026	genomic RNA	1	231	6A,14S,83L,116A,154K,180D
AY786978	USA	10CP-1026	genomic RNA	1	231	6A,14S,83L,116A,154K,180D
AY786979	USA	5CP-1026	genomic RNA	1	231	5S,6A,14S,76G,83L,104L,116A,154K,180D,191A

Genbank References: capsid (p24)

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