Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Ritchie (2014)	Recombination-mediated escape from primary CD8+ T cells in acute HIV-1 infection	Retrovirology 11 (1), 69 (2014)	1.39e-152	100	1	Naive	Plasma	SGS	Acute infection

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Accession	IsolateName	Country	Coll Date	MolType	Note	FirstAA	LastAA	MutList
KC149035	CH0078.e.gp10	South Africa	2007	genomic DNA	subtype: C	1	231	6F,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149036	CH0078.e.gp11	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149037	CH0078.e.gp13	South Africa	2007	genomic DNA	subtype: C	1	231	6L,20*LS,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149038	CH0078.e.gp15	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149039	CH0078.e.gp17	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149040	CH0078.e.gp18	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149041	CH0078.e.gp19	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149042	CH0078.e.gp20	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149043	CH0078.e.gp21	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149044	CH0078.e.gp23	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149045	CH0078.e.gp24	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149046	CH0078.e.gp25	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149047	CH0078.e.gp26	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149048	CH0078.e.gp28	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149049	CH0078.e.gp29	South Africa	2007	genomic DNA	subtype: C	1	231	6L,21S,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149050	CH0078.e.gp6	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149051	CH0078.e.gp8	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149052	CH0078.e.gp9	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149053	CH0078.s.gp1	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149054	CH0078.s.gp10	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149055	CH0078.s.gp2	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149056	CH0078.s.gp3	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149057	CH0078.s.gp4	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149058	CH0078.s.gp5	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149059	CH0078.s.gp6	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149060	CH0078.s.gp9	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149074	CH0078.w1.gp15	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149075	CH0078.w1.gp17	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149076	CH0078.w1.gp18	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149077	CH0078.w1.gp19	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149078	CH0078.w1.gp20	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149079	CH0078.w1.gp24	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83T,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149080	CH0078.w1.gp27	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149081	CH0078.w1.gp4	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149082	CH0078.w1.gp5	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149083	CH0078.w1.gp8	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149061	CH0078.w16.gp1	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149062	CH0078.w16.gp11	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149063	CH0078.w16.gp12	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149064	CH0078.w16.gp14	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,163DG,169F,178T,187D,200N,203R,208G,229K
KC149065	CH0078.w16.gp18	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200NT,203R,208G,229K
KC149066	CH0078.w16.gp19	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149067	CH0078.w16.gp2	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149068	CH0078.w16.gp22	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83T,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149069	CH0078.w16.gp24	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149070	CH0078.w16.gp4	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149071	CH0078.w16.gp7	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83T,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149072	CH0078.w16.gp9	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149094	CH0078.w2.gp1	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149096	CH0078.w2.gp11	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149097	CH0078.w2.gp16	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149098	CH0078.w2.gp17	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149099	CH0078.w2.gp18	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149100	CH0078.w2.gp19	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149101	CH0078.w2.gp2	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149102	CH0078.w2.gp20	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149103	CH0078.w2.gp22	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149104	CH0078.w2.gp23	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149105	CH0078.w2.gp4	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149106	CH0078.w2.gp8	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149107	CH0078.w2.gp9	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149084	CH0078.w24.gp1	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83T,116A,120S,124V,148V,169F,178T,187D,189LMV,203R,208G,229K
KC149085	CH0078.w24.gp10	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149086	CH0078.w24.gp11	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83T,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149087	CH0078.w24.gp12	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83T,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149088	CH0078.w24.gp14	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149089	CH0078.w24.gp2	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149090	CH0078.w24.gp3	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83T,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149091	CH0078.w24.gp4	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83T,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149092	CH0078.w24.gp6	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83T,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149093	CH0078.w24.gp8	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83T,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149108	CH0078.w3.gp1	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149109	CH0078.w3.gp10	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149110	CH0078.w3.gp11	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149111	CH0078.w3.gp12	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149112	CH0078.w3.gp16	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149113	CH0078.w3.gp17	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149114	CH0078.w3.gp2	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149115	CH0078.w3.gp4	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149117	CH0078.w3.gp6	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149118	CH0078.w3.gp7	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149119	CH0078.w4.gp11	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149120	CH0078.w4.gp12	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149121	CH0078.w4.gp18	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149122	CH0078.w4.gp19	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149123	CH0078.w4.gp4	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149124	CH0078.w4.gp5	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149125	CH0078.w4.gp6	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149126	CH0078.w4.gp7	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149127	CH0078.w4.gp8	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149128	CH0078.w4.gp9	South Africa	2007	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149129	CH0078.w60.gp10	South Africa	2008	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149130	CH0078.w60.gp11	South Africa	2008	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,200N,203R,208G,229K
KC149131	CH0078.w60.gp12	South Africa	2008	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149132	CH0078.w60.gp13	South Africa	2008	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149133	CH0078.w60.gp14	South Africa	2008	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149134	CH0078.w60.gp4	South Africa	2008	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149135	CH0078.w60.gp5	South Africa	2008	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149136	CH0078.w60.gp6	South Africa	2008	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83T,116A,120S,124V,148V,169F,178T,187D,203R,208G,229K
KC149137	CH0078.w60.gp7	South Africa	2008	genomic DNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,163G,169F,178T,187D,200N,203R,208G,229K

Genbank References: capsid (p24)

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