| Accession | IsolateName | Country | Coll Date | Clone | MolType | Source | Note | FirstAA | LastAA | MutList |
|---|
| KC156210 | 2139 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,14S,27I,41T,71D,83L,96S,116A,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,225S |
| KC156179 | 2139.gp1 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,96S,116A,120G,124V,154K,169F,178T,187D,203R,208G,225S |
| KC156180 | 2139.gp10 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,96S,116A,120G,124V,154K,169F,178T,187D,203R,208G,225S |
| KC156181 | 2139.gp11 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,14S,27I,41T,71D,83L,96S,116A,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,225S |
| KC156182 | 2139.gp12 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,96S,116A,120G,124V,154K,169F,178T,187D,203R,208G,225S |
| KC156183 | 2139.gp13 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,96S,116A,120G,124V,154K,169F,178T,187D,203R,208G,225S |
| KC156184 | 2139.gp14 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,14S,27I,41T,71D,83L,96S,116A,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,225S |
| KC156185 | 2139.gp15 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,96S,116A,120G,124V,154K,169F,178T,187D,203R,208G,225S |
| KC156186 | 2139.gp16 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,96S,116A,120G,124V,154K,169F,178T,187D,203R,208G,225S |
| KC156187 | 2139.gp17 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,14S,27I,41T,71D,83L,96S,116A,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,225S |
| KC156188 | 2139.gp18 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,96S,116A,120G,124V,154K,169F,178T,187D,203R,208G,225S |
| KC156189 | 2139.gp19 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,14S,27I,41T,71D,83L,96S,116A,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,225S |
| KC156190 | 2139.gp2 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,96S,116A,120G,124V,154K,169F,178T,187D,203R,208G,225S |
| KC156191 | 2139.gp21 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,23*,27I,41T,60E,71D,80*,83L,96S,97K,101R,116A,117*,120G,124V,154K,156R,169F,178T,187D,203R,206R,208G,225S |
| KC156192 | 2139.gp22 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,14S,27I,41T,71D,83L,96S,116A,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,225S |
| KC156193 | 2139.gp23 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,96S,116A,120G,124V,154K,169F,178T,187D,203R,208G,225S |
| KC156194 | 2139.gp25 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,14S,27I,41T,71D,83L,96S,116A,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,225S |
| KC156195 | 2139.gp26 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,96S,116A,120G,124V,154K,169F,178T,187D,203R,208G,225S |
| KC156196 | 2139.gp27 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,96S,116A,120G,124V,154K,169F,178T,187D,203R,208G,225S |
| KC156197 | 2139.gp29 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,14S,27I,41T,71D,83L,96S,116A,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,225S |
| KC156198 | 2139.gp3 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,96S,116A,120G,124V,154K,169F,178T,187D,203R,208G,225S |
| KC156199 | 2139.gp30 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,96S,116A,120G,124V,154K,169F,178T,187D,203R,208G,225S |
| KC156200 | 2139.gp31 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,14S,27I,41T,71D,83L,96S,116A,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,225S |
| KC156201 | 2139.gp32 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,14S,27I,41T,71D,83L,96S,116A,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,225S |
| KC156202 | 2139.gp33 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,96S,116A,120G,124V,154K,169F,178T,187D,203R,208G,225S |
| KC156203 | 2139.gp4 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,96S,116A,120G,124V,154K,169F,178T,187D,203R,208G,225S |
| KC156204 | 2139.gp46 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,14S,27I,41T,71D,83L,96S,116A,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,225S |
| KC156205 | 2139.gp5 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,96S,116A,120G,124V,154K,169F,178T,187D,203R,208G,225S |
| KC156206 | 2139.gp6 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,96S,116A,120G,124V,154K,169F,178T,187D,203R,208G,225S |
| KC156207 | 2139.gp7 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,96S,116A,120G,124V,154K,169F,178T,187D,203R,208G,225S |
| KC156208 | 2139.gp8 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,96S,116A,120G,124V,154K,169F,178T,187D,203R,208G,225S |
| KC156209 | 2139.gp9 | India | 29-May-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,96S,116A,120G,124V,154K,169F,178T,187D,203R,208G,225S |
| KC156124 | CH042.mo6 | South Africa | 20-Jul-2007 | | genomic RNA | | subtype: C | 1 | 231 | 6L,22T,27I,41T,71D,83L,91V,96I,111P,116T,120S,148V,154K,169F,180D,187D,203R,208G |
| KC156211 | CH085.w4a | Malawi | 01-Mar-2007 | | genomic RNA | | subtype: C | 1 | 231 | 6A,11T,15L,27I,31N,41T,71D,83L,115V,116A,120G,148V,154K,163E,169F,178T,180D,187D,203R,208G |
| KC156114 | CH131_TF | Malawi | 08-Mar-2007 | | genomic RNA | | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,83M,91A,110N,116A,120S,128D,148V,154K,169F,177S,187D,191I,207S,208G,210S |
| KC156212 | CH141.w12 | Malawi | 13-Nov-2007 | | genomic RNA | | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,83L,87Q,91V,116A,128D,148V,154K,160S,169F,177S,187D,207S,208G |
| KC156126 | CH162_TF | South Africa | 22-Jun-2007 | | genomic RNA | | subtype: C | 1 | 231 | 6L,14S,15L,31G,33N,41T,71D,83L,128D,148V,154K,169F,178T,180D,203R,204G,207Q,208G |
| KC156115 | CH162.mo6 | South Africa | 18-Dec-2007 | | genomic RNA | | subtype: C | 1 | 231 | 6L,14S,15L,31G,33N,41T,71D,83L,128D,148V,154K,169F,178T,180D,203R,204G,207Q,208G |
| KC156127 | CH164_TF | South Africa | 16-Aug-2007 | | genomic RNA | | subtype: C | 1 | 231 | 6A,13T,14P,15L,16T,27I,31N,36I,41T,71D,83L,91A,115V,116A,120S,148V,154K,169F,178T,180D,187D,203R,208G,210S |
| KC156128 | CH164.mo6 | South Africa | 01-Feb-2008 | | genomic RNA | | subtype: C | 1 | 231 | 6A,13T,14P,15L,16T,27I,31N,41T,71D,83L,91A,115V,116A,120S,148V,154K,160S,169F,178T,180D,187D,203R,208G,210S |
| KC156213 | CH167.w8 | Malawi | 24-May-2007 | | genomic RNA | | subtype: C | 1 | 231 | 6A,14P,16T,27I,31N,41T,71D,83L,87P,91V,96I,98D,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S |
| KC156116 | CH185.mo6 | South Africa | 09-Jan-2008 | | genomic RNA | | subtype: C | 1 | 231 | 6L,27I,41T,50G,71D,83I,116A,120S,124V,148V,154K,169F,178T,180D,187D,200I,203R,204G,208G |
| KC156117 | CH200_TFa | Malawi | 11-May-2007 | | genomic RNA | | subtype: C | 1 | 231 | 6A,14S,27I,41T,50E,71D,111R,115V,116A,120G,128D,148V,154K,169F,177G,178T,180D,203R,208G,210S,225S |
| KC156118 | CH200_TFb | Malawi | 11-May-2007 | | genomic RNA | | subtype: C | 1 | 231 | 6A,14S,27I,41T,50E,71D,75D,83L,111R,115V,116A,120G,128D,148V,154K,169F,177G,178T,180D,203R,208G,225S |
| KC156119 | CH200_TFc | Malawi | 11-May-2007 | | genomic RNA | | subtype: C | 1 | 231 | 6A,14S,27I,41T,50E,71D,111R,115V,116A,120G,128D,148V,154K,169F,177G,178T,180D,203R,208G,210S,225S |
| KC156120 | CH228_TFa | Malawi | 01-Jun-2007 | | genomic RNA | | subtype: C | 1 | 231 | 6A,27I,41T,71D,79D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G |
| KC156121 | CH228_TFb | Malawi | 01-Jun-2007 | | genomic RNA | | subtype: C | 1 | 231 | 6A,27I,41T,71D,79D,83L,91V,116A,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G |
| KC156122 | CH256_TF | Malawi | 16-Aug-2007 | | genomic RNA | | subtype: C | 1 | 231 | 6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S |
| KC156214 | CH256.w96 | Malawi | 30-Jun-2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S |
| KC156215 | CH269.w24 | Malawi | 09-Apr-2008 | | genomic RNA | | subtype: C | 1 | 231 | 6L,14P,15L,27I,31G,33N,41T,71D,83L,91V,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S |
| KC156216 | CH293.w8a | Malawi | 01-Apr-2008 | | genomic RNA | | subtype: C | 1 | 231 | 14P,15L,27I,41T,71D,83L,87Q,91V,110N,116A,120S,124V,148V,154K,169F,178T,180D,187D,203R,210S,225S |
| KC156217 | CH293.w8b | Malawi | 01-Apr-2008 | | genomic RNA | | subtype: C | 1 | 231 | 14P,15L,27I,41T,71D,83L,87Q,91V,110N,116A,120S,124V,148V,154K,169F,178T,180D,187D,203R,210S,225S |
| KC156218 | CH432.w4 | Malawi | 07-May-2008 | | genomic RNA | | subtype: C | 1 | 231 | 6P,13H,14P,15L,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S |
| KC156219 | CH440.w4 | Malawi | 12-May-2008 | | genomic RNA | | subtype: C | 1 | 231 | 6V,14P,27I,41T,49S,59I,71D,83L,91V,116A,120G,128D,148V,154K,160S,169F,178T,187D,203R,208G,225S |
| KC156220 | CH457.w8 | Tanzania | 10-Jun-2008 | | genomic RNA | | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,87P,91V,96L,98D,116A,120A,123A,128D,148V,154K,169F,178T,187D,191I,208G,225S |
| KC156221 | CH534.w12 | South Africa | 26-Aug-2008 | | genomic RNA | | subtype: C | 1 | 231 | 6L,14P,41T,75D,83L,91V,108S,116A,120S,128D,148V,154K,169F,177S,178T,200G,203R,208H,211I,225S |
| KC596061 | DE00109CN003 | China | 2009 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: CRF01_AE | 1 | 231 | 6A,14S,15L,31G,33N,54M,58I,92P,120S,128D,178T,200S,207T,208G |
| KC596062 | DE00109CN004 | China | 2009 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: CRF01_AE | 1 | 231 | 6A,14S,15L,31G,33N,54M,58I,92P,120S,128D,148V,149G,178T,200S,207T,208G |
| KP109504 | DE00109CN005 | China | 2009 | | genomic RNA | | initially isolated from a person from China;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: CRF01_AE | 1 | 231 | 6A,14P,15L,31G,33N,54M,58I,86A,87Q,91F,92P,96L,148V,149G,200S,207M,208G,210S,225S |
| KP109505 | DE00109CN008 | China | 2009 | | genomic RNA | | initially isolated from a person from China;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: CRF01_AE | 1 | 231 | 6T,13S,14P,15L,31G,33N,54M,58I,92P,128D,131R,143K,146C,148V,154K,178T,200S,207T,208G,225S |
| KC596063 | DE00110CN001 | China | 2010 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: CRF01_AE | 1 | 231 | 6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,116A,120S,128D,148I,178T,200F,207T,208G,225S |
| KP109506 | DE00110CN007 | China | 2010 | | genomic RNA | | initially isolated from a person from China;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: CRF01_AE | 1 | 231 | 6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,207T,208G,225S |
| KP109507 | DE00110CN009 | China | 2010 | | genomic RNA | | initially isolated from a person from China;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: CRF01_AE | 1 | 231 | 6A,14S,15L,31G,33N,54M,58I,87Q,92P,96L,128D,148V,178T,200S,207T,208G,225S |
| KP109513 | DE00110TH001 | Thailand | 2010 | | genomic RNA | | initially isolated from a person from Thailand;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: CRF01_AE | 1 | 231 | 6A,14P,16A,31G,33N,48A,54M,58V,72A,83T,92P,120G,128D,148V,154K,178T,200S,207T,208G,225S |
| KC596064 | DE00111CN002 | China | 2011 | | genomic RNA | | subtype: CRF01_AE | 1 | 231 | 6A,10W,11T,14S,15L,31G,33N,54M,58I,71D,92P,120S,128D,180D,200S,207T,208G,225S |
| KC596065 | DE00111CN003 | China | 2011 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: CRF01_AE | 1 | 231 | 6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,116A,128D,148I,178T,200S,207T,208G,225S |
| KF859741 | DE00111JP003 | Japan | 2011 | | genomic RNA | | subtype: CRF01_AE | 1 | 231 | 6A,11T,14P,15V,31G,33N,54M,58I,83L,87Q,92P,105APST,106*GR,107S,109I,111HLPR,115IKRT,120S,128D,148V,174APST,178T,200S,207T,208G,225S |
| KP109508 | DE00112CN011 | China | 2012 | | genomic RNA | | initially isolated from a person from China;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: CRF01_AE | 1 | 231 | 6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,207T,208G,209V,225S |
| MT222954 | DE00114VN001 | Viet Nam | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Vietnam. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: CRF01_AE | 1 | 231 | 6T,14P,15L,31G,33N,54M,58I,83L,92P,128D,148V,154K,178T,200A,203R,225S |
| MT222955 | DE00114VN003 | Viet Nam | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Vietnam. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: CRF01_AE | 1 | 231 | 6T,14P,15L,31G,33N,54M,58I,83L,92P,128D,148V,154K,178T,200A,203R,225S |
| MH078560 | DE00115PH006 | Philippines | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom Phillipines. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: CRF01_AE | 1 | 231 | 6A,14P,15V,31G,33N,54M,58I,79D,92P,120S,128D,148V,178T,200A,207S,208G,225S |
| MH078561 | DE00115PH007 | Philippines | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom Phillipines. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: CRF01_AE | 1 | 231 | 6A,14P,15V,31G,33N,54M,58I,79D,92P,120S,128D,148V,178T,200A,207T,208G,225S |
| KY658688 | DE00115PH012 | Philippines | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom Phillipines. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: CRF01_AE | 1 | 231 | 5S,6A,14P,15V,31G,33N,54M,58I,86I,87Q,92P,96L,112P,120G,123S,128D,148V,178T,200S,207T,208G |
| MT222956 | DE00115VN004 | Viet Nam | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom Vietnam. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: CRF01_AE | 1 | 231 | 6A,11I,14P,31G,33N,54M,58I,87Q,91F,92P,120H,128D,148V,178T,200S,207T,208G,225T,229K,230I |
| MT222957 | DE00115VN005 | Viet Nam | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom Vietnam. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: CRF01_AE | 1 | 231 | 6A,14P,15LV,31G,33N,54M,58I,87Q,92P,107ST,120H,128D,178T,200S,207T,208G,225S |
| MN703151 | DE00116PH008 | Philippines | 2016 | | genomic RNA | | This virus was initially isolated from a personfrom Phillipines. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: CRF01_AE | 1 | 231 | 6A,14P,15V,31G,33N,54M,58I,79D,83T,86I,87Q,91F,92P,96L,120S,148V,178T,200S,207T,208G,225S |
| MH078562 | DE00116PH013 | Philippines | 2016 | | genomic RNA | | This virus was initially isolated from a personfrom Phillipines. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: CRF01_AE | 1 | 231 | 6A,14P,15V,31G,33N,54M,58I,79D,83T,86I,87Q,96I,120S,148V,178T,200S,210S,225S |
| JX140645 | DE00206AO001 | Spain | 2006 | | genomic RNA | | recent infection;subtype: CRF02_AG | 1 | 231 | 6A,11T,14N,15L,27I,31G,54M,58I,71D,83L,87Q,92P,115M,120S,128D,148V,154K,169F,178T,200S,207T,208G |
| JX140646 | DE00208CM001 | Cameroon | 2008 | | genomic RNA | | subtype: CRF 02_AG | 1 | 231 | 6A,10W,14S,27I,54M,58I,71D,83L,87Q,92P,96L,120S,128D,129M,148V,169F,171A,178T,183G,200S,207T,208G,225S |
| JX140647 | DE00208CM004 | Cameroon | 2008 | | genomic RNA | | subtype: CRF 02_AG | 1 | 231 | 6A,14P,41T,54M,58I,71D,91V,110N,120S,135V,148V,154K,169F,177G,178T,180D,200I,203R,204G,208G,230I |
| KU749432 | DE00208RU002 | Russia | 2008 | | genomic RNA | | This virus was initially isolated from a personfrom Russia. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: CRF02_AG | 1 | 231 | 6A,11T,14S,15M,27I,41T,54M,58I,71D,83I,91N,92P,120S,135V,148V,169F,178T,200S,203R,208G |
| KF859739 | DE00210CM013 | Cameroon | 2010 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: CRF02_AG | 1 | 231 | 6A,14S,15M,27I,41T,54M,58I,71D,92P,120S,124V,135V,148V,169F,178T,200S,203R,208G |
| KF859740 | DE00210CM013.2 | Cameroon | 2010 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: URF_CRF22_01A1 and CRF02_AG | 1 | 231 | 6A,14S,15M,27I,41T,54M,58I,71D,92P,120S,124V,135V,148V,169F,178T,203R,204G,208G |
| KU749419 | DE00210CM019 | Cameroon | 2010 | | genomic RNA | | This virus was initially isolated from a personfrom Cameroon. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: CRF02_AG | 1 | 231 | 6A,14P,41T,54M,58I,71D,79D,83A,91Y,92P,116A,120S,148V,169F,178T,180D,203R,208G |
| KY953197 | DE00211NG009 | Nigeria | 2011 | | genomic RNA | | This virus was initially isolated from a personfrom Nigeria. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: CRF02_AG | 1 | 231 | 6A,11T,14N,15M,27I,41T,54M,58I,71D,83T,92P,116A,120S,124V,135V,148V,154K,169F,178T,180D,200N,203R,208G |
| KY953198 | DE00211NG010 | Nigeria | 2011 | | genomic RNA | | This virus was initially isolated from a personfrom Nigeria. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: CRF02_AG | 1 | 231 | 6A,27I,41T,54M,58I,71D,83A,92P,120S,135V,148V,169F,178T,203R,208G,217S |
| KP109519 | DE00212FR004 | France | 2012 | | genomic RNA | | initially isolated from a person from France;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: CRF02_AG | 1 | 231 | 6A,11T,14S,15M,27I,54M,58I,71D,92P,120S,135V,154K,169F,178T,200S,203R,208G |
| MN703128 | DE00213GW041 | Guinea-Bissau | 2013 | | genomic RNA | | This virus was initially isolated from a personfrom Guinea-Bissau. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: CRF02_AG | 1 | 231 | 3I,6A,10W,11I,14S,15V,27I,36I,48A,54M,58I,71D,83T,92P,120S,135V,148V,169F,178T,180D,203R,208G,210S |
| MH078541 | DE00214GW002 | Guinea-Bissau | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Guinea-Bissau. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: CRF02_AG# | 1 | 231 | 6A,11I,14P,15M,27I,45D,47C,54M,58V,71D,79D,83T,92P,110N,111I,120S,148V,169F,178T,180D,200S,203R,207Q,208G |
| MH078542 | DE00214GW005 | Guinea-Bissau | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Guinea-Bissau. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: CRF02_AG# | 1 | 231 | 6A,14P,15M,41T,54M,58I,71D,92P,116A,120S,124V,135V,169F,178T,180D,203R,208G,225A |
| MH078543 | DE00214GW007 | Guinea-Bissau | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Guinea-Bissau. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: CRF02_AG# | 1 | 231 | 6A,14P,15M,27I,41T,54M,58I,71D,78V,83T,87Q,92P,120S,135V,148V,169F,178T,191I,203R,204G,207Q,208G |
| MH078544 | DE00214GW009 | Guinea-Bissau | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Guinea-Bissau. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: CRF02_AG# | 1 | 231 | 6A,10W,11I,14S,15M,27I,36I,48A,54M,58I,71D,79D,83T,92Q,120G,169F,178T,183G,199R,200N,203R,208G |
| MK397970 | DE00214GW018 | Guinea-Bissau | 2014 | | genomic RNA | | subtype: CRF02_AG | 1 | 231 | 6A,14S,15M,26A,27I,41T,54M,58I,71D,75D,83T,86L,87Q,92P,120S,135V,169F,203R,204G,208G |
| MH078545 | DE00214GW020 | Guinea-Bissau | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Guinea-Bissau. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: CRF02_AG# | 1 | 231 | 6A,10W,11T,14S,15M,27I,54M,58I,71D,91V,92Q,110N,120S,169F,178T,200S,203R,208G |
| MN703129 | DE00214GW033 | Guinea-Bissau | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Guinea-Bissau. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: CRF02_AG | 1 | 231 | 6A,14P,15M,27I,41T,54M,58I,71D,78V,83T,87Q,92P,96L,110N,120S,135V,148V,154K,169F,187DE,200S,210S,225S |
| MN703130 | DE00214GW039 | Guinea-Bissau | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Guinea-Bissau. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: CRF02_AG | 1 | 231 | 6A,11T,12Y,14S,15M,27I,36I,54M,58I,71D,92P,115V,120S,128D,148V,169F,171A,178T,180D,199R,204G,207S,208G |
| MT222961 | DE00214GW043 | Guinea-Bissau | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Guinea-Bissau. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: CRF02_AG | 1 | 231 | 6A,10W,11T,14S,27I,52V,54M,58I,71D,83T,87Q,92P,120S,132K,135V,148V,169F,178T,203R,207Q,208G,216A |
| MT222937 | DE00215CM060 | Cameroon | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom Cameroon. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: CRF02_AG | 1 | 231 | 6A,15L,27I,31G,33N,41T,54M,58I,71D,83T,92P,110N,113D,120G,135V,148V,154K,169F,178T,180D,203R,208G,225S |
| KY658712 | DE00215PK035 | Pakistan | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom Pakistan. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: CRF02_AG | 1 | 231 | 6A,15V,27I,54M,58I,71D,83I,86A,87Q,91L,92P,96I,120S,148V,149G,154K,169F,178T,200S,203R,208G,225S |
| KY658713 | DE00215PK038 | Pakistan | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom Pakistan. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: CRF02_AG | 1 | 231 | 6A,14P,15M,27I,41T,54M,58I,71D,83I,86A,87Q,91L,92P,115V,120S,135V,139H,141L,148V,149G,154K,169F,178T,200S,203R,208G,213D,225S |
| MH078536 | DE00216CI019 | Cote d'Ivoire | 2016 | | genomic RNA | | This virus was initially isolated from a personfrom Ivory coast. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: CRF02_AG | 1 | 231 | 6A,14S,27I,54M,58I,71D,87Q,92P,120S,135V,148V,169F,178T,200S,203R,208G |
| JX140648 | DE00400GR002 | Greece | 2000 | | genomic RNA | | subtype: CRF 04_CPX | 1 | 231 | 6A,14T,15M,27I,44A,45D,54C,58I,71D,83T,86A,91V,92Q,110N,120S,148V,169F,171V,178T,191I,200S,207T,208G,225S |
| KY953199 | DE01109NG003 | Nigeria | 2009 | | genomic RNA | | This virus was initially isolated from a personfrom Nigeria. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: CRF11_cpx | 1 | 231 | 6A,14P,15V,27I,54M,58I,71D,78I,92P,96L,120S,124V,131R,148V,154K,169F,171A,178T,180D,200S,203R,207Q,208G,225S |
| KY658700 | DE01111CM045 | Cameroon | 2011 | | genomic RNA | | This virus was initially isolated (KT758211) from aperson from Cameroon. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: CRF11_cpx | 1 | 231 | 6A,14P,54M,58I,71D,92P,116A,120S,124V,131R,148V,154K,169F,178T,180D,187D,191I,203R,208G,225A |
| JX140649 | DE01405BR001 | Spain | 2005 | | genomic RNA | | subtype: CRF14_BG | 1 | 231 | 6A,14P,54L,71D,72A,83M,86Q,87Q,92P,96I,116T,148V,169F,178T,183G,187D,203R,208G |
| KC473837 | DE01405ES002 | Spain | 2005 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: CRF14_BG | 1 | 231 | 6A,36I,71D,83I,86Q,87Q,92P,96I,116R,128D,148V,169F,178T,183G,187D,203R,208G,225S |
| KP109498 | DE02210CM003 | Cameroon | 2010 | | genomic RNA | | initially isolated from a person from Cameroon;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: CRF22_01A1 | 1 | 231 | 3M,6A,15L,31G,33N,54M,58I,71DE,91N,92P,120S,148V,169F,178T,200S,207T,208G |
| KP109499 | DE02210CM005 | Cameroon | 2010 | | genomic RNA | | initially isolated from a person from Cameroon;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: CRF22_01A1 | 1 | 231 | 6A,15V,31G,54M,58I,71D,83I,91N,92P,116A,120S,148V,154K,169F,178T,200S,207T,208G |
| KP109500 | DE02210CM006 | Cameroon | 2010 | | genomic RNA | | initially isolated from a person from Cameroon;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: CRF22_01A1 | 1 | 231 | 3I,6A,11A,14P,15L,31G,33N,54M,58I,71D,83M,91H,92P,110N,120G,148V,169F,178T,200A,203R,207T,208G |
| KF716460 | DE02210CM010 | Cameroon | 2010 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: CRF022_01A1 | 1 | 231 | 6A,15V,31G,33N,54M,58I,71D,83I,91N,92P,110N,120S,148V,169F,180D,187D,200S,207T,208G |
| KF716461 | DE02210CM011 | Cameroon | 2010 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: CRF022_01A1 | 1 | 231 | 3M,6A,15L,31G,33N,54M,58I,71D,91N,92P,120S,148V,169F,178T,200S,207T,208G |
| KF716462 | DE02210CM012 | Cameroon | 2010 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: CRF022_01A1 | 1 | 231 | 6A,15V,31G,54M,58I,71D,83I,86I,91N,92P,120S,148V,154K,169F,178T,200S,207T,208G |
| KF716463 | DE02210CM014 | Cameroon | 2010 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: CRF022_01A1 | 1 | 231 | 3I,6A,11A,14P,15L,31G,33N,54M,58I,71D,83M,91H,92P,110N,120G,148V,169F,178T,200A,203R,207T,208G |
| KC473838 | DE02408ES002 | Spain | 2008 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: CRF24_BG | 1 | 231 | 6A,10P,11I,71D,83M,86Q,87Q,92P,96I,116T,148V,154K,169F,178T,183G,187D,203R,208G,210S |
| KC473839 | DE04708ES003 | Spain | 2008 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: CRF47_BF | 1 | 231 | 6A,9H,11I,14P,47C,71D,83L,92P,116Q,120S,124V,128D,148V,154K,169F,171V,178T,180D,194S,208Q |
| KC473840 | DE04708ES004 | Spain | 2008 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: CRF47_BF | 1 | 231 | 6A,11M,14P,47C,71D,83L,92P,108I,116Q,120S,124V,128D,148V,154K,169F,171V,178T,180D,194S,208Q,230I |
| KP109509 | DE05909CN012 | China | 2009 | | genomic RNA | | initially isolated from a person from China;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: CRF59_01B | 1 | 231 | 6A,11T,14S,15L,31G,33N,54M,58I,83L,92P,110N,120S,128D,148V,154K,178T,200S,207T,208G,225S |
| KU749388 | DE07010BR033 | Brazil | 2010 | | genomic RNA | | This virus was initially isolated (KJ849809) from aperson from Brazil. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref: Pessoa,R. et al; Transfusion. 2015May;55(5):980-90;subtype: CRF70_BF1 | 1 | 231 | 6M,10T,27I,71D,87Q,92P,96I,116Q,120S,148I,169F,178T,187D,208G,225S |
| KP109528 | DEMA07RW002 | Rwanda | 2007 | | genomic RNA | | propagated from an infectious molecular clone inPBMCs and used to establish the global viral diversitypanel for External Quality Assurance Program OversightLaboratory (EQAPOL);subtype: A1 | 1 | 231 | 2V,6A,10W,14N,15F,27I,29D,31G,54M,58I,71D,83A,92Q,111P,116A,128D,148V,154K,169F,179P,180D,200S,203R,207A,208G |
| KC596070 | DEMA07UG005 | Uganda | 2007 | | genomic RNA | | propagated from the infectious molecular clone(IMC) in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: A | 1 | 231 | 6A,11I,14P,15L,30R,31G,54M,58I,71D,79D,83L,87Q,92P,96I,111P,116A,118I,120G,124F,128D,148V,154K,169F,174V,180D,183G,191I,200S,203R,207Q,208G,210S |
| JX140650 | DEMA105TZ001 | Spain | 2005 | | genomic RNA | | chronic infection;subtype: A1 | 1 | 231 | 6A,10W,11T,14N,15L,27I,41T,50H,54M,58I,71D,83L,92P,107A,111P,115L,116Q,120S,124V,128D,148V,169F,171C,180D,183T,191I,200S,203R,207A,208G,225S |
| JX140651 | DEMA106ES002 | Spain | 2006 | | genomic RNA | | subtype: A1 | 1 | 231 | 6A,14N,15L,27I,58I,71D,83L,92P,111P,115L,116Q,120A,148V,154K,169F,171A,178T,183G,194S,200G,208G,225S |
| KU749423 | DEMA106RW003 | Rwanda | 2006 | | genomic RNA | | This virus was initially isolated (KC019062) from aperson from Rwanda. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref: Price, M. et al; AIDS Res. Hum.Retroviruses 27 (1), 5-12 (2011);subtype: A1 | 1 | 231 | 6A,15V,26A,27I,30R,58I,68L,71D,83L,92P,120S,124V,128D,131R,148V,154K,169F,171I,177G,200S,203R,204G,207Q,208G,210S,216A,225S |
| KF716491 | DEMA108RU003 | Russia | 2008 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: A1 | 1 | 231 | 6A,11I,14P,15M,27I,41T,54M,58I,71D,83I,86A,87Q,91F,92P,98D,110N,120S,128D,148V,169F,171V,178T,180D,203R,207S,208G |
| KF716492 | DEMA108RU004 | Russia | 2008 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: A1 | 1 | 231 | 6A,14S,15M,27I,54M,58I,71D,72A,83L,86A,87Q,91L,92P,98D,116A,120S,128D,148V,169F,178T,180D,191I,203R,207S,208G |
| KU749424 | DEMA108RW010 | Rwanda | 2008 | | genomic RNA | | This virus was initially isolated (KC018983) from aperson from Rwanda. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref: Price, M. et al; AIDS Res. Hum.Retroviruses 27 (1), 5-12 (2011);subtype: A1 | 1 | 231 | 6A,11I,14P,15L,27I,31G,33N,54M,58I,71D,83L,91A,92P,111P,120G,128D,148V,154K,169F,171V,178T,191I,200S,203R,207T,208G |
| KY658694 | DEMA108TZ002 | Tanzania | 2008 | | genomic RNA | | This virus was initially isolated from a personfrom Tanzania. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: A1 | 1 | 231 | 6A,15L,27I,54M,58I,71D,83L,87Q,92P,96L,118I,120G,128N,132Q,148V,152E,154K,169F,171A,178T,183A,187Q,200S,207T,208G,225S |
| KY658695 | DEMA108TZ004 | Tanzania | 2008 | | genomic RNA | | This virus was initially isolated from a personfrom Tanzania. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: A1 | 1 | 231 | 6A,11M,14P,15L,27I,30R,31G,48I,54M,58I,71D,83L,92P,111S,120S,128D,148V,154K,169F,171V,178T,183G,200S,203R,207S,208G,210S,225S |
| KY658696 | DEMA108TZ012 | Tanzania | 2008 | | genomic RNA | | This virus was initially isolated from a personfrom Tanzania. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: A1 | 1 | 231 | 6T,12Y,14S,15V,27I,54M,58I,71D,83L,87Q,91V,96L,98D,111P,120S,128D,148V,154K,169F,171A,178T,183G,200S,203R,207T,208G,225S |
| KF716478 | DEMA109UG001 | Uganda | 2009 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: A1 | 1 | 231 | 6V,11I,14P,15L,27I,31G,33N,54M,58I,71D,83L,91V,110N,111T,116A,120G,128D,148V,154K,169F,171A,178T,183G,200S,203R,207S,208G,225S |
| KP109490 | DEMA109UG017 | Uganda | 2009 | | genomic RNA | | initially isolated from a person from Uganda;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: A1 | 1 | 231 | 6A,11I,15V,27I,54M,58I,71D,83L,87Q,92P,96L,111P,120G,128D,148V,154K,169F,178T,180D,200L,203R,204G,207T,208G,210S |
| KF859745 | DEMA110UG001 | Uganda | 2011 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: A1 | 1 | 231 | 6A,27I,45D,54M,58I,71D,83L,86A,87Q,92P,96I,98D,111I,116T,120G,128D,148V,154K,169F,178T,183G,191I,200S,203R,207A,208G,225S |
| KF716486 | DEMA110UG009 | Uganda | 2011 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: A1 | 1 | 231 | 6A,15V,27I,50G,54M,58I,71D,83L,86L,96I,111T,116A,120G,128D,131R,148V,154K,169F,171C,178T,183G,200S,203R,207S,208G,225S |
| KF716474 | DEMA111KE002 | Kenya | 2011 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: A1 | 1 | 231 | 6A,11I,14S,15L,27I,54M,58I,71D,83L,86I,87Q,92P,96L,111P,120G,128D,148V,154K,169F,177C,178T,187D,200S,203R,204G,208G |
| KF716472 | DEMA111RW002 | Rwanda | 2011 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: A1 | 1 | 231 | 6A,14S,15L,27I,54M,58I,71D,83L,87P,91V,92P,96I,98D,111S,116R,120S,128D,148V,154K,169F,183G,187D,191I,200S,203R,208G,210S,225S |
| KU749399 | DEMA111UA002 | Ukraine | 2011 | | genomic RNA | | This virus was initially isolated from a personfrom Ukraine. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: A1 | 1 | 231 | 6A,11T,14S,15M,27I,41T,54M,58I,71D,83T,86A,87Q,91F,92P,98D,120S,148V,169F,178T,180D,200A,203R,208G |
| KU749400 | DEMA111UA008 | Ukraine | 2011 | | genomic RNA | | This virus was initially isolated from a personfrom Ukraine. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: A1 | 1 | 231 | 6A,14S,27I,54M,58I,71D,83L,86A,87Q,91F,92P,120S,128D,148V,169F,178T,180D,203R,208G |
| KU749401 | DEMA111UA009 | Ukraine | 2011 | | genomic RNA | | This virus was initially isolated from a personfrom Ukraine. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: A1 | 1 | 231 | 3M,5T,6A,11T,12Y,14S,15M,27I,31G,48V,52I,54M,58I,71D,83L,87Q,91Y,92P,116A,120S,124V,128D,132K,154K,169F,178T,180D,203R,208G |
| KY658681 | DEMA112UA013 | Ukraine | 2012 | | genomic RNA | | This virus was initially isolated from a personfrom Ukraine. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: A1 | 1 | 231 | 6A,14S,27I,45D,54M,58I,71D,83L,86A,87Q,91F,92P,96I,116T,128D,148V,154K,169F,178T,180D,203R,208G |
| KU749402 | DEMA112UA014 | Ukraine | 2012 | | genomic RNA | | This virus was initially isolated from a personfrom Ukraine. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: A1 | 1 | 231 | 6A,14S,15M,27I,33N,58I,71D,83L,86A,87Q,91F,92P,120S,132K,136I,139H,144T,148V,152E,169F,178T,180D,203R,207S,208G,225S,230I |
| KU749403 | DEMA112UA024 | Ukraine | 2012 | | genomic RNA | | This virus was initially isolated from a personfrom Ukraine. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: A1 | 1 | 231 | 6A,14S,15M,27I,41T,54M,58I,59I,71D,83T,86A,87Q,91F,92P,93A,120S,148V,169F,178T,187D,200S,208G |
| KU749404 | DEMA112UA030 | Ukraine | 2012 | | genomic RNA | | This virus was initially isolated from a personfrom Ukraine. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: A1 | 1 | 231 | 6A,14P,15M,27I,54M,58I,71D,72A,83L,86A,87Q,91F,92P,120G,128D,148V,169F,178T,187D,200N,203R,208G |
| KU749405 | DEMA112UA034 | Ukraine | 2012 | | genomic RNA | | This virus was initially isolated from a personfrom Ukraine. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: A1 | 1 | 231 | 6A,14S,27I,41T,54M,58I,71D,86A,87Q,91F,92P,93A,96I,116A,120S,128D,148V,169F,178T,180D,203R,208G |
| KU749406 | DEMA112UA036 | Ukraine | 2012 | | genomic RNA | | This virus was initially isolated from a personfrom Ukraine. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: A1 | 1 | 231 | 6A,11T,12Y,14S,15L,27I,71D,83L,86T,87Q,91L,92P,128D,148A,169F,178T,203R,208G,225S |
| KY658682 | DEMA112UA040 | Ukraine | 2012 | | genomic RNA | | This virus was initially isolated from a personfrom Ukraine. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: A1 | 1 | 231 | 6A,14S,27I,54M,58I,71D,83L,86A,87Q,91F,92P,93A,120S,128D,169F,178T,203R,208G |
| KU749407 | DEMA112UA042 | Ukraine | 2012 | | genomic RNA | | This virus was initially isolated from a personfrom Ukraine. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: A1 | 1 | 231 | 6A,14S,15M,27I,31G,54M,58I,71D,83L,86A,87Q,91V,96I,98D,110N,116A,120S,128D,148V,169F,178T,180D,187D,203R,208G |
| KU749409 | DEMA114PK001 | Pakistan | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Pakistan. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: A1 | 1 | 231 | 6T,9H,10F,15V,27I,58I,71D,83L,87Q,91V,96I,111P,115V,116A,120A,121T,128D,154K,169F,171A,178T,180D,183G,203R,207T,208G,225S |
| KU749410 | DEMA114PK002 | Pakistan | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Pakistan. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: A1 | 1 | 231 | 6A,9H,10Y,15V,27I,41T,54M,58I,71D,83L,87Q,96I,111I,116A,120A,121T,128D,154K,169F,178T,183G,203R,208G |
| KU749411 | DEMA114PK013 | Pakistan | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Pakistan. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: A1 | 1 | 231 | 6A,10F,11I,15V,27I,36I,54M,58I,71D,75D,77I,79D,83Q,86I,91V,111I,115V,116A,120A,128D,148V,154K,169F,171V,178T,183V,204S,207T,208G,210S,225S |
| KY658714 | DEMA114PK027 | Pakistan | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Pakistan. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: A1 | 1 | 231 | 6A,10F,11I,15M,27I,41T,54M,58I,71D,78V,83L,86I,116A,120A,128D,148V,154K,169F,171V,178T,183S,187D,203R,208G |
| MT222942 | DEMA115PK021 | Pakistan | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom Pakistan. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: A1 | 1 | 231 | 6A,9H,10Y,11I,15V,27I,36I,48A,54M,58I,71D,83I,108S,111I,116A,120A,148V,154K,169F,171A,178T,183G,200A,203R,207T,208G,225S |
| KY658715 | DEMA115PK030 | Pakistan | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom Pakistan. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: A1 | 1 | 231 | 6A,9H,10Y,11I,15V,27I,54M,58I,71D,83L,87P,91V,96I,98D,111P,116A,120A,128D,148V,154K,169F,171V,178T,183G,203R,207T,208G,225S |
| KY658716 | DEMA115PK031 | Pakistan | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom Pakistan. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: A1 | 1 | 231 | 6A,10F,11I,15V,27I,54M,58I,71D,83L,87P,91V,96I,98D,111P,116A,120A,128D,148V,154K,169F,171V,178T,183G,203R,207T,208G,225S |
| KF716475 | DEMA11KE001 | Kenya | 2011 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: A1 | 1 | 231 | 6A,11I,14N,15L,27I,36I,45D,50Y,54M,58I,71D,83L,87Q,92P,111P,120S,128D,148V,154K,169F,178T,183G,191I,200S,203R,207T,208G |
| MN703135 | DEMA614RU011 | Russia | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Russia. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: A6 | 1 | 231 | 6A,11AITV,14S,15M,27I,54M,58I,71D,83L,86IT,87Q,91F,92P,96L,120S,128D,148V,169F,178T,180D,200N,203R,208G |
| MT222944 | DEMA614RU012 | Russia | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Russia. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).This virus was contributed by URBAN ARCH Consortium.subtype: A6 | 1 | 231 | 6A,11T,14S,15M,27I,54M,58I,71D,83L,86A,87Q,91F,92P,120S,148V,169F,178T,200A,207S,208G |
| MT222945 | DEMA614RU015 | Russia | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Russia. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).This virus was contributed by URBAN ARCH Consortium.subtype: A6 | 1 | 231 | 6A,11T,14S,15M,27I,41T,54M,58I,59I,71D,83L,86T,87Q,91F,92P,96L,120S,124V,128D,148V,169F,178T,180D,203R,208G |
| MT222946 | DEMA614RU017 | Russia | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Russia. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).This virus was contributed by URBAN ARCH Consortium.subtype: A6 | 1 | 231 | 6A,10P,14S,27I,54M,58I,71D,83L,86A,87Q,91F,92P,120S,128D,148V,169F,178T,187D,200N,208G |
| MT222947 | DEMA614RU018 | Russia | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Russia. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).This virus was contributed by URBAN ARCH Consortium.subtype: A6 | 1 | 231 | 6A,14S,27I,54M,58I,71D,83L,86A,87Q,91F,92P,98D,120S,128D,148V,169F,178T,203R,208G |
| MN703136 | DEMA614RU019 | Russia | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Russia. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: A6 | 1 | 231 | 6A,11I,14S,27I,54M,58I,71D,83L,86A,87Q,91F,92P,96I,98D,116E,120R,128D,154K,169F,171V,178T,203R,207S,208G |
| MT222948 | DEMA614RU024 | Russia | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Russia. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).This virus was contributed by URBAN ARCH Consortium.subtype: A6 | 1 | 231 | 6A,14L,15M,27I,54M,58I,71D,83L,86A,87Q,91F,92P,120G,131R,148V,154K,169F,178T,180D,203R,207S,208G |
| MN703137 | DEMA614RU025 | Russia | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Russia. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: A6 | 1 | 231 | 6A,11T,12Y,14S,15M,26A,27I,36I,48A,54M,58I,71D,83L,86A,87Q,91L,92P,98D,120H,128D,148V,169F,178T,180D,187D,191I,203R,208G,210S,225S |
| MT222949 | DEMA615RU028 | Russia | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom Russia. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).This virus was contributed by URBAN ARCH Consortium.subtype: A6 | 1 | 231 | 6A,11T,12Y,14S,15L,27I,36I,75D,83L,86A,87Q,91F,92P,116A,120S,128D,148I,169F,171A,178T,180D,200N,203R,207S,208G |
| MN703138 | DEMA616RU023 | | | | genomic RNA | | subtype: A1(100.0%) | 1 | 231 | 6A,11I,14S,15M,27I,54M,58I,71D,83L,86A,87Q,91F,92P,120S,128D,148V,169F,178T,180D,203R,208G |
| MN703139 | DEMA616RU026 | | | | genomic RNA | | subtype: A2(0.3%),A1(99.1%),D(0.4%),G(0.2%) | 1 | 231 | 6A,14S,15M,27I,54M,58I,71D,83L,86A,87Q,91F,92P,93A,96I,98D,116A,120S,131R,148V,154K,169F,178T,180D,187D,203R,208G,210N |
| KC473846 | DEMB03JP004 | USA | 2003 | | genomic RNA | | subtype: B | 1 | 231 | 6L,14P,83L,91N,92P,116A,194S,216A,225S,230I |
| JX140652 | DEMB05FR001 | France | 2005 | | genomic RNA | | subtype: B | 1 | 231 | 6L,83L |
| KY658683 | DEMB08AR002 | Argentina | 2008 | | genomic RNA | | This virus was initially isolated from a personfrom Argentina. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref. Socias et al. J Int AIDS Soc. 2011 Aug10;14:40. doi: 10.1186/1758-2652-14-40.subtype: B | 1 | 231 | 6L,15L,41T,83L,179P,180D,183T,200I,204G,207Q,208G,230I |
| JX140653 | DEMB08ES001 | Spain | 2008 | | genomic RNA | | acute infection;subtype: B | 1 | 231 | 6L,15L,27I,83L,107A,110N,116A,148V,183T |
| JX140654 | DEMB08FR002 | France | 2008 | | genomic RNA | | subtype: B | 1 | 231 | 6L,14P,68I,72A,75D,83L,91V,120S,149G,154K |
| KY658697 | DEMB08UK003 | United Kingdom | 2008 | | genomic RNA | | This virus was initially isolated from a personfrom United Kingdom. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: B | 1 | 231 | 6M,14P,27I,71D,83L,87Q,91V,110N,139T,148I,154K |
| JX140655 | DEMB08UY001 | Spain | 2008 | | genomic RNA | | acute infection;subtype: B | 1 | 231 | 6L,14P,15L,41T,83L,154K,180D,194S,208G |
| MH078530 | DEMB09AR010 | Argentina | 2009 | | genomic RNA | | This virus was initially isolated from a personfrom Argentina. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref. Socias et al. J Int AIDS Soc. 2011 Aug10;14:40. doi: 10.1186/1758-2652-14-40.subtype: B | 1 | 231 | 6L,15L,83L,91V,116N,154K,178T,225S,230I |
| JX140656 | DEMB09BO001 | Spain | 2009 | | genomic RNA | | acute infection;subtype: B | 1 | 231 | 6M,27I,41T,83L,87Q,91V,124V,154K,208G,225S |
| KU749389 | DEMB09BR040 | Brazil | 2009 | | genomic RNA | | This virus was initially isolated (KJ849784) from aperson from Brazil. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref: Pessoa,R. et al; Transfusion. 2015May;55(5):980-90;subtype: B | 1 | 231 | 6L,83L,120H,128D,136M,154K,178T,216S |
| KC596066 | DEMB09CN002 | China | 2009 | | genomic RNA | | subtype: B | 1 | 231 | 6L,15L,27I,41T,68I,72V,83L,91V,116A,120S,128D,180D,225S |
| KP109510 | DEMB09CN013 | China | 2009 | | genomic RNA | | initially isolated from a person from China;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: B | 1 | 231 | 6L,14P,41T,71D,79D,83L,91N,92P,154K,180D,191I,194S |
| KC473841 | DEMB09ES007 | Spain | 2009 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: B | 1 | 231 | 6L,83L,120H,136M,154K,180D,225S |
| KF716494 | DEMB09FR001 | France | 2009 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: B | 1 | 231 | 6L,15L,27I,83L,136M,148V,178T |
| KF716495 | DEMB09FR002 | France | 2009 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: B | 1 | 231 | 14P,41V,87P,91L,96P,98D,116A,120H,132K,135V,148I |
| JX140657 | DEMB09US002 | USA | 2009 | | genomic RNA | | subtype: B | 1 | 231 | 15L,41A,50G,83T,91V,96L,116A,120H,132K,148S,154K |
| KC473824 | DEMB09US003 | USA | 2009 | | genomic RNA | | subtype: B | 1 | 231 | 6L,12Y,15L,16A,41T,83L,111P,116A,120S,148V,178T |
| KP109515 | DEMB09ZA022 | South Africa | 2009 | | genomic RNA | | initially isolated from a person from South Africa;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: B | 1 | 231 | 6L,15L,50S,83L,128D |
| MN703127 | DEMB10AR005 | Argentina | 2010 | | genomic RNA | | This virus was initially isolated from a personfrom Argentina. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref. Socias et al. J Int AIDS Soc. 2011 Aug10;14:40. doi: 10.1186/1758-2652-14-40.subtype: B | 1 | 231 | 6L,14P,44A,58A,83L,116A,131R,154K,180D,207T,208G |
| KY658684 | DEMB10AR006 | Argentina | 2010 | | genomic RNA | | This virus was initially isolated from a personfrom Argentina. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref. Socias et al. J Int AIDS Soc. 2011 Aug10;14:40. doi: 10.1186/1758-2652-14-40.subtype: B | 1 | 231 | 6L,14P,15L,41T,83I,91V,96I,116T,120S,180D,210S |
| KU749390 | DEMB10BR038 | Brazil | 2010 | | genomic RNA | | This virus was initially isolated (KJ849799) from aperson from Brazil. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref: Pessoa,R. et al; Transfusion. 2015May;55(5):980-90;subtype: B | 1 | 231 | 6A,12Y,14S,48P,54I,58A,83L,91V,116A,123A,180D,194S,208G |
| JX140658 | DEMB10CN002 | China | 2010 | | genomic RNA | | chronic infection;subtype: B | 1 | 231 | 6L,14P,44A,75D,83L,86Q,87Q,154K,178T,216S,225S |
| KC473842 | DEMB10ES002 | Spain | 2010 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: B | 1 | 231 | 6L,15M,83M,120H,148S,180D |
| KC473843 | DEMB10ES003 | Spain | 2010 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: B | 1 | 231 | 6M,27I,41T,83L,87Q,91V,124V,154K,208G |
| KP109514 | DEMB10TH002 | Thailand | 2010 | | genomic RNA | | initially isolated from a person from Thailand;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: B | 1 | 231 | 6M,14P,83L,87A,91V,96L,98D,120H,154K,171V,180D,225S,230I |
| KC473825 | DEMB10US001 | USA | 2010 | | genomic RNA | | subtype: B | 1 | 231 | 6L,14S,27I,83L,91N,120S |
| KC473826 | DEMB10US003 | USA | 2010 | | genomic RNA | | subtype: B | 1 | 231 | 6M,83L,87Q,91V,96L,110N,116A,120H |
| KC473827 | DEMB10US004 | USA | 2010 | | genomic RNA | | subtype: B | 1 | 231 | 6L,14S,15L,41T,83L,87Q,91V,96L,116A,124V,154K,170R,203R |
| KC473828 | DEMB10US007 | USA | 2010 | | genomic RNA | | subtype: B | 1 | 231 | 6L,15L,27I,91V,96L,116A,120H,148V,178T |
| KC473829 | DEMB10US009 | USA | 2010 | | genomic RNA | | subtype: B | 1 | 231 | 6L,27I,41T,71D,83L,87Q,120S,154K,180D,225S |
| KC473830 | DEMB10US011 | USA | 2010 | | genomic RNA | | subtype: B | 1 | 231 | 6M,83L,86A,87Q,91V,96V,116A,120H |
| JX140659 | DEMB10VE001 | Spain | 2010 | | genomic RNA | | acute infection;subtype: B | 1 | 231 | 6L,14P,41T,83L,120S,154K,180D,194S,208G |
| KY658702 | DEMB11DR001 | Dominican Republic | 2011 | | genomic RNA | | This virus was initially isolated from a personfrom Dominican Republic. It was then propogated in PBMCsand was used to establish the global viral diversity panelfor External Quality Assurance Program OversightLaboratory (EQAPOL).subtype: B | 1 | 231 | 6L,14P,15L,16T,83I,120S,148V,180D |
| KF716496 | DEMB11FR001 | France | 2011 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: B | 1 | 231 | 83L,136M,154K |
| KF716497 | DEMB11JP002 | Japan | 2011 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: B | 1 | 231 | 6L,83L,87P,91N,92P,96I,116A,180D |
| KC473831 | DEMB11US002 | USA | 2011 | | genomic RNA | | subtype: B | 1 | 231 | 6L,83L,115V,120S,136M,183S,225S |
| KC473832 | DEMB11US004 | USA | 2011 | | genomic RNA | | subtype: B | 1 | 231 | 4R,6L,83L,116A,120S,128D,132Q,136M,148V,154K,178T,216S |
| KC473833 | DEMB11US006 | USA | 2011 | | genomic RNA | | subtype: B | 1 | 231 | 6L,14P,27I,83L,87A,91P,120H,128D,136M |
| KC473834 | DEMB11US011 | USA | 2011 | | genomic RNA | | subtype: B | 1 | 231 | 6M,14P,15L,16T,27I,31N,41A,83L,116A,132K,136M,154K,178T,216S |
| KC473835 | DEMB11US015 | USA | 2011 | | genomic RNA | | subtype: B | 1 | 231 | 6L,83L |
| KP109511 | DEMB12CN006 | China | 2012 | | genomic RNA | | initially isolated from a person from China;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: B | 1 | 231 | 6L,15L,27I,33N,41T,68I,83L,91V,96V,116A,128D,148V,180D,187D,225S |
| KP109512 | DEMB12CN010 | China | 2012 | | genomic RNA | | initially isolated from a person from China;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: B | 1 | 231 | 14P,15L,79D,83L,91V,116A,120S,154K,225S,230I |
| KF716498 | DEMB12JP001 | Japan | 2012 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: B | 1 | 231 | 6L,83L,91N,92P,116A |
| KP109518 | DEMB13ES010 | Spain | 2013 | | genomic RNA | | initially isolated from a person from Spain;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: B | 1 | 231 | 6L,14P,15L,83L,116A,148V,178T,216A,230I |
| MH078552 | DEMB13PE010 | Peru | 2013 | | genomic RNA | | This virus was initially isolated from a personfrom Peru. It was then propogated in PBMCs and was used toestablish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: B | 1 | 231 | 6L,14P,27I,41T,68I,72V,78G,83L,91V,96L,128D,201L,208G |
| KU749387 | DEMB13US026 | USA | 2013 | | genomic RNA | | This virus was initially isolated from a personfrom USA. It was then propogated in PBMCs and was used toestablish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: B | 1 | 231 | 27I,83L,86P,87Q,96I,110S,116T,120S,148V |
| KY658685 | DEMB14AR003 | Argentina | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Argentina. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref. Socias et al. J Int AIDS Soc. 2011 Aug10;14:40. doi: 10.1186/1758-2652-14-40.subtype: B | 1 | 231 | 6L,15L,27I,41T,83L,87Q,91V,96L,110N,116A,120H,128D,136M,178T,208G |
| MH078531 | DEMB14AR012 | Argentina | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Argentina. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref. Socias et al. J Int AIDS Soc. 2011 Aug10;14:40. doi: 10.1186/1758-2652-14-40.subtype: B | 1 | 231 | 6L,14P,15M,16T,44A,83L,116A,136M,148V,154K,180D,208G,210S |
| MH078546 | DEMB14GW004 | Guinea-Bissau | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Guinea-Bissau. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: B | 1 | 231 | 6L,14P,44A,83L,87Q,91V,96L,107S,110N,116A,120H,148V,154K,170R,171V,180D |
| MH078553 | DEMB14PE008 | Peru | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Peru. It was then propogated in PBMCs and was used toestablish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: B | 1 | 231 | 6L,148I,180D |
| MN703133 | DEMB14PE012 | Peru | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Peru. It was then propogated in PBMCs and was used toestablish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: B | 1 | 231 | 6L,14P,83L,91V,96L,180D |
| MN703140 | DEMB14RU009 | Russia | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Russia. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: B | 1 | 231 | 6L,15L,27I,83L,116N,148V |
| KY658693 | DEMB14US030 | USA | 2014 | | genomic RNA | | subtype: B | 1 | 231 | 6L,83L,96I,116A,154K,178T |
| MH078532 | DEMB15AR013 | Argentina | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom Argentina. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref. Socias et al. J Int AIDS Soc. 2011 Aug10;14:40. doi: 10.1186/1758-2652-14-40.subtype: B | 1 | 231 | 6L,15L,83L,86A,87Q,91V,96I,98D,116A,154K,178T,194S,208G,225S,230I |
| MH078533 | DEMB15AR014 | Argentina | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom Argentina. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref. Socias et al. J Int AIDS Soc. 2011 Aug10;14:40. doi: 10.1186/1758-2652-14-40.subtype: B | 1 | 231 | 6V,14P,27I,83I,91A,148V,180D |
| MN703134 | DEMB15PE001 | Peru | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom Peru. It was then propogated in PBMCs and was used toestablish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: B | 1 | 231 | 6L,14P,79D,83L,87Q,91V,120S,149C,154K,171V,180D,194S |
| KY658689 | DEMB15PH002 | Philippines | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom Phillipines. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: B | 1 | 231 | 14P,15L,83L,110N,120H,154K,194S,225S,230I |
| KY658690 | DEMB15PH003 | Philippines | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom Phillipines. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: B | 1 | 231 | 6L,27I,83L,148V,154K,180D,200I,204S,225S |
| MH078554 | DEMB16PE003 | Peru | 2016 | | genomic RNA | | This virus was initially isolated from a personfrom Peru. It was then propogated in PBMCs and was used toestablish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: B | 1 | 231 | 6L,83L,154K,171V,180D |
| MH078555 | DEMB16PE009 | Peru | 2016 | | genomic RNA | | This virus was initially isolated from a personfrom Peru. It was then propogated in PBMCs and was used toestablish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: B | 1 | 231 | 6L,15L,52I,71D,86P,87Q,96I,116T,120S,134V,177C,180D |
| MT222951 | DEMB16UK018 | United Kingdom | 2016 | | genomic RNA | | This virus was initially isolated from a personfrom United Kingdom. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: B | 1 | 231 | 6L,15L,83L,86P,87Q,91V,96I,98D,116A,136M,208G |
| MT222952 | DEMB18UK020 | United Kingdom | 2018 | | genomic RNA | | This virus was initially isolated from a personfrom United Kingdom. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: B | 1 | 231 | 6L,15IL,41ST,83L,148V,180D,199KR |
| JX140660 | DEMBF09ES003 | Spain | 2009 | | genomic RNA | | subtype: BF | 1 | 231 | 6L,15L,71D,83L,92P,116Q,120S,124V,148V,154K,169F,171V,178T,183G,210S,225S |
| JX140661 | DEMBF09ES006 | Spain | 2009 | | genomic RNA | | acute infection;subtype: BF | 1 | 231 | 2V,6L,11A,12Y,14T,15L,71D,83L,116Q,120G,124V,148V,154K,169F,171V,188S,207T,208G |
| KC596067 | DEMBXXDE001 | Germany | | | genomic RNA | | subtype: B | 1 | 231 | 6M,41T,83L,91V,148S,154K,194S,208G,225T,229K,230I |
| KC596069 | DEMBXXPL001 | Poland | | | genomic RNA | | subtype: B | 1 | 231 | 6L,15L,41T,83L,91V,136I,148V,180D |
| KY658704 | DEMC00BW010 | Botswana | 2000 | | genomic RNA | | This virus was initially isolated (AF443099) from aperson from Botswana. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref: Novitsky VA, Montano MA, McLane MF, RenjifoB, Vannberg F, Foley BT, Ndung'u TP, Rahman M, Makhema M,J., Marlink R, Essex M. Molecular cloning and phylogeneticanalysis of HIV-1 subtype C: a set of 23 full-lengthclones from Botswana. J. Virol. 1999;73(5):4427-4432.subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,116A,120G,124V,128D,148V,169F,178T,180D,187D,203R,208G,225S |
| KY658705 | DEMC00BW013 | Botswana | 2000 | | genomic RNA | | This virus was initially isolated from a personfrom Botswana. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: C | 1 | 231 | 6L,27I,28DE,29*E,36I,41T,66MR,68MR,69*GLV,71D,75EV,83L,91N,116A,120S,128D,129IL,148V,154K,169F,178T,180D,187D,203R,208G,225S |
| KY658706 | DEMC00BW014 | Botswana | 2000 | | genomic RNA | | This virus was initially isolated from a personfrom Botswana. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,207T,208G,225S |
| KP109480 | DEMC00IN005 | India | 2000 | | genomic RNA | | initially isolated from a person from India;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,83L,91P,110N,116A,120G,124V,148V,154K,169F,178T,180D,187D,203R,208G,225S |
| KP109481 | DEMC00IN006 | India | 2000 | | genomic RNA | | initially isolated from a person from India;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6L,27I,36I,41T,71D,79D,83L,116A,120S,124V,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S |
| KP109482 | DEMC00IN007 | India | 2000 | | genomic RNA | | initially isolated from a person from India;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,110N,116A,120G,124V,128D,154K,169F,178T,187D,191I,203R,208G,225S |
| KP109483 | DEMC00IN008 | India | 2000 | | genomic RNA | | initially isolated from a person from India;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6L,41T,71D,83T,86I,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,191I,203R,208G,210S,211I,225S |
| KP109484 | DEMC00IN009 | India | 2000 | | genomic RNA | | initially isolated from a person from India;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6M,14P,27I,41T,71D,81E,83L,91N,107S,116A,120S,124V,128D,154K,169F,178T,187D,203R,208G,225S |
| KP109485 | DEMC00IN010 | India | 2000 | | genomic RNA | | initially isolated from a person from India;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,83L,87P,116N,120G,124V,148V,169F,178T,180D,187D,203R,208G,210S |
| KC473844 | DEMC06ES003 | Spain | 2006 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6L,14P,15L,27I,41T,71D,83L,116T,120S,128D,148V,169F,178T,187D,203R,208G,210S |
| JX140662 | DEMC07AO001 | Spain | 2007 | | genomic RNA | | subtype: C | 1 | 231 | 6A,41T,71D,116A,120G,154K,169F,178T,180D,187D,203R,208G |
| JX140663 | DEMC07BR003 | Brazil | 2007 | | genomic RNA | | subtype: C | 1 | 231 | 6L,14P,16A,17A,41T,71D,83L,91V,96V,120G,148V,154K,169F,178T,187D,200S,203R,208G |
| KP109520 | DEMC07MW001 | Malawi | 2007 | | genomic RNA | | initially isolated from a person from Malawi;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory;subtype: C | 1 | 231 | 6L,27I,31G,33N,41T,71D,83L,128D,148V,154K,169F,178T,180D,187D,200N,203R,207V,208G,225S |
| JX140664 | DEMC07ZA011 | South Africa | 2007 | | genomic RNA | | subtype: C | 1 | 231 | 6A,27I,41T,71D,83L,87Q,96I,116A,148V,154K,169F,178T,187D,200S,203R,208G,210S |
| KU749425 | DEMC07ZM013 | Zambia | 2007 | | genomic RNA | | This virus was initially isolated (KC018772) from aperson from Zambia. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref: Price, M. et al; AIDS Res. Hum.Retroviruses 27 (1), 5-12 (2011);subtype: C | 1 | 231 | 6L,14S,15L,27I,41T,71D,83L,91V,94N,116A,120S,128D,148V,154K,169F,177S,187D,207S,208G,210S,230I |
| KP109521 | DEMC08MW002 | Malawi | 2008 | | genomic RNA | | initially isolated from a person from Malawi;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6P,13H,14P,15L,41T,50H,71D,83L,91V,96A,116I,120S,124V,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S |
| KP109522 | DEMC08MW004 | Malawi | 2008 | | genomic RNA | | initially isolated from a person from Malawi;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6A,27I,41T,71D,83I,116A,120S,148V,154K,169F,178T,180D,187D,203R,208G,225S |
| JX140665 | DEMC08NG001 | Spain | 2008 | | genomic RNA | | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,110S,116A,120S,124V,128D,148V,154K,169F,178T,183G,203R,208G,225S |
| MH078540 | DEMC08TZ005 | Tanzania | 2008 | | genomic RNA | | This virus was initially isolated from a personfrom Tanzania. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,87P,91V,96L,98D,116A,120A,123A,128D,148V,154K,169F,178T,187D,191I,208G,225S |
| JX140666 | DEMC08ZA011 | South Africa | 2008 | | genomic RNA | | subtype: C | 1 | 231 | 6L,27I,36I,41T,71D,83L,91V,115V,116A,118I,120G,123S,128D,148V,169F,178T,187D,203R,208G,225S |
| KU749391 | DEMC09BR036 | Brazil | 2009 | | genomic RNA | | This virus was initially isolated from a personfrom Brazil. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).Ref: Pessoa,R. et al; Transfusion. 2015 May;55(5):980-90;subtype: C | 1 | 231 | 6L,41T,67E,68I,71D,83L,116A,124V,128D,148V,154K,169F,178T,187D,203R,204G,207A,208G,210S |
| KP109523 | DEMC09MW006 | Malawi | 2009 | | genomic RNA | | initially isolated from a person from Malawi;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6L,14S,27I,41T,71D,83L,110N,116A,120A,128D,136M,148V,154K,169F,173S,178T,180D,187D,191T,200I,203R,204G,208G |
| KP109524 | DEMC09MW007 | Malawi | 2009 | | genomic RNA | | initially isolated from a person from Malawi;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6A,14S,27I,41T,71D,83L,86P,87Q,91V,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S |
| KP109525 | DEMC09MW008 | Malawi | 2009 | | genomic RNA | | initially isolated from a person from Malawi;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6L,14T,15L,27I,31G,33N,41T,68I,71D,75D,79D,83L,116A,124V,148V,169F,178T,180D,207S,208G |
| KP109526 | DEMC09MW009 | Malawi | 2009 | | genomic RNA | | initially isolated from a person from Malawi;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6L,27I,36I,71D,83L,116A,128D,148V,169F,178T,187D,208G,225S |
| KP109527 | DEMC09MW010 | Malawi | 2009 | | genomic RNA | | initially isolated from a person from Malawi;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6L,27I,41T,91A,116A,120G,128D,146N,148V,154K,178T,187D,200I,204G,208G |
| JX140667 | DEMC09ZA008 | South Africa | 2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,10X,27I,41T,71D,87P,91V,96I,98D,116T,120S,128D,148V,169F,178T,180D,187D,203R,208G |
| JX140668 | DEMC09ZA009 | South Africa | 2009 | | genomic RNA | | subtype: C | 1 | 231 | 6L,15M,27I,41T,50S,54S,71D,83L,116A,128D,148V,169F,178T,180D,187D,203R,208G,210S,225S |
| KF716466 | DEMC09ZM004 | Zambia | 2009 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6L,14P,15L,27I,41T,71D,83L,113D,116A,120S,128D,148V,154K,169F,171C,178T,180D,203R |
| KU749426 | DEMC09ZM015 | Zambia | 2009 | | genomic RNA | | This virus was initially isolated (KC018565) from aperson from Zambia. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref: Price, M. et al; AIDS Res. Hum.Retroviruses 27 (1), 5-12 (2011);subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,87Q,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S,225S |
| KU749392 | DEMC10BR024 | Brazil | 2010 | | genomic RNA | | This virus was initially isolated from a personfrom Brazil. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).Ref: Pessoa,R. et al; Transfusion. 2015 May;55(5):980-90;subtype: C | 1 | 231 | 6L,14P,41T,71D,83L,91V,96L,116A,124V,128D,148S,169F,180D,187D,207Q,208G |
| JX140669 | DEMC10ZA001 | South Africa | 2010 | | genomic RNA | | subtype: C | 1 | 231 | 6L,14S,15L,27I,41T,71D,91V,116T,120S,124V,148V,169F,178T,203R,204G,208G |
| KU749393 | DEMC11BR035 | Brazil | 2011 | | genomic RNA | | This virus was initially isolated from a personfrom Brazil. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).Ref: Pessoa,R. et al; Transfusion. 2015 May;55(5):980-90;subtype: C | 1 | 231 | 6L,11T,14P,27I,41T,71D,83L,91V,116A,120G,124V,148V,154K,169F,178T,180D,187D,203R,208G |
| KP109494 | DEMC11ZM003 | Zambia | 2011 | | genomic RNA | | initially isolated from a person from Zambia;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6A,14P,27I,41T,71D,83L,96L,110N,116A,128D,148V,154K,169F,178T,180D,203R,207A,208G |
| KP109495 | DEMC11ZM005 | Zambia | 2011 | | genomic RNA | | initially isolated from a person from Zambia;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,83L,86A,87Q,91V,96I,116T,120S,148V,154K,169F,178T,187D,200N,203R,208G,225S |
| KF716467 | DEMC11ZM006 | Zambia | 2011 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,83L,87Q,91V,96V,116A,120S,128D,136M,148V,154K,169F,171C,177C,178T,180D,187D,208G,210S,225S |
| KP109496 | DEMC11ZM008 | Zambia | 2011 | | genomic RNA | | initially isolated from a person from Zambia;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,171V,178T,180D,187D,203R,208G,210S,211I,225S |
| KP109516 | DEMC12ZA087 | South Africa | 2012 | | genomic RNA | | initially isolated from a person from South Africa;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6L,15L,41T,68I,71D,116A,120S,124V,148V,154K,169F,178T,180D,187D,208G,210S,211V |
| KP109517 | DEMC12ZA096 | South Africa | 2012 | | genomic RNA | | initially isolated from a person from South Africa;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,83L,91P,110N,116A,120G,124V,128D,136M,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,225A |
| KU749415 | DEMC13ZA146 | South Africa | 2013 | | genomic RNA | | This virus was initially isolated from a personfrom South Africa. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: C | 1 | 231 | 6L,27I,36I,41T,71D,83L,91V,110N,116A,120S,124V,128D,148V,169F,178T,180D,187D,203R,208G |
| KU749416 | DEMC13ZA149 | South Africa | 2013 | | genomic RNA | | This virus was initially isolated from a personfrom South Africa. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: C | 1 | 231 | 6H,27I,41T,50A,71D,96I,116A,120S,135V,148V,154K,169F,178T,180D,187D,203R,208G |
| KU749417 | DEMC13ZA152 | South Africa | 2013 | | genomic RNA | | This virus was initially isolated from a personfrom South Africa. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,191I,203R,207Q,208G,210S,225S |
| KU749412 | DEMC14PK009 | Pakistan | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Pakistan. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,91V,112A,116A,118I,120G,124V,148IT,169F,178T,180D,187D,203R,208G |
| MN703145 | DEMC14ZA175 | South Africa | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom South Africa. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: C | 1 | 231 | 6L,27I,41T,71D,91V,96I,116T,128D,148V,154K,169F,178T,187D,203R,204G,208G,210S,225S |
| MT222958 | DEMC14ZA176 | South Africa | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom South Africa. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: C | 1 | 231 | 6L,27I,41T,71D,91V,116A,120S,124V,148V,169F,178T,203R,204G,208G |
| MN703146 | DEMC14ZA177 | South Africa | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom South Africa. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: C | 1 | 231 | 6A,27I,41T,71D,83L,87P,98D,116A,120G,148V,154K,169F,178T,183T,187D,191I,203R,208G,209P,210S,225S |
| MN703147 | DEMC14ZA179 | South Africa | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom South Africa. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: C | 1 | 231 | 6A,13T,14P,15L,16T,31N,41T,71D,83L,116A,120G,148V,154K,169F,178T,180D,187D,203R,210S |
| MN703148 | DEMC14ZA180 | South Africa | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom South Africa. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: C | 1 | 231 | 6L,15L,27I,31S,41T,71D,83L,86I,91V,110N,116A,120S,128D,148V,169F,187D,203R,204G,208G,210S,230I |
| MN703149 | DEMC14ZA181 | South Africa | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom South Africa. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: C | 1 | 231 | 6L,14P,17A,41T,71D,83L,91A,116A,120G,123A,128D,148V,154K,169F,177S,178T,187D,203R,208G,225S |
| MN703150 | DEMC14ZA182 | South Africa | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom South Africa. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: C | 1 | 231 | 6M,27I,36I,41T,71D,83L,91V,96L,116A,120NS,124V,128D,148V,154K,169F,178T,180D,203R,210S,225S |
| KY658707 | DEMC96BW001 | Botswana | 1996 | | genomic RNA | | This virus was initially isolated (AF110962 -AF110965) from a person from Botswana. It was thenpropogated in PBMCs and was used to establish the globalviral diversity panel for External Quality AssuranceProgram Oversight Laboratory (EQAPOL). Ref: Novitsky VA,Montano MA, McLane MF, Renjifo B, Vannberg F, Foley BT,Ndung'u TP, Rahman M, Makhema M, J., Marlink R, Essex M.Molecular cloning and phylogenetic analysis of HIV-1subtype C: a set of 23 full-length clones from Botswana.J. Virol. 1999;73(5):4427-4432.subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S,225S |
| KY658708 | DEMC96BW002 | Botswana | 1996 | | genomic RNA | | This virus was initially isolated (AF110967 -AF110968) from a person from Botswana. It was thenpropogated in PBMCs and was used to establish the globalviral diversity panel for External Quality AssuranceProgram Oversight Laboratory (EQAPOL). Ref: Novitsky VA,Montano MA, McLane MF, Renjifo B, Vannberg F, Foley BT,Ndung'u TP, Rahman M, Makhema M, J., Marlink R, Essex M.Molecular cloning and phylogenetic analysis of HIV-1subtype C: a set of 23 full-length clones from Botswana.J. Virol. 1999;73(5):4427-4432.subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,91V,98D,116A,120S,124V,128D,148V,169F,178T,180D,203R,208G |
| KY658709 | DEMC96BW006 | Botswana | 1996 | | genomic RNA | | This virus was initially isolated (AF110969 -AF110971) from a person from Botswana. It was thenpropogated in PBMCs and was used to establish the globalviral diversity panel for External Quality AssuranceProgram Oversight Laboratory (EQAPOL). Ref: Novitsky VA,Montano MA, McLane MF, Renjifo B, Vannberg F, Foley BT,Ndung'u TP, Rahman M, Makhema M, J., Marlink R, Essex M.Molecular cloning and phylogenetic analysis of HIV-1subtype C: a set of 23 full-length clones from Botswana.J. Virol. 1999;73(5):4427-4432.subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,187D,203R,208G,210S,225S |
| KY658710 | DEMC96BW007 | Botswana | 1996 | | genomic RNA | | This virus was initially isolated (AF110972) from aperson from Botswana. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref: Novitsky VA, Montano MA, McLane MF, RenjifoB, Vannberg F, Foley BT, Ndung'u TP, Rahman M, Makhema M,J., Marlink R, Essex M. Molecular cloning and phylogeneticanalysis of HIV-1 subtype C: a set of 23 full-lengthclones from Botswana. J. Virol. 1999;73(5):4427-4432.subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S |
| KY658711 | DEMC96BW009 | Botswana | 1996 | | genomic RNA | | This virus was initially isolated (AF110976 -AF110978) from a person from Botswana. It was thenpropogated in PBMCs and was used to establish the globalviral diversity panel for External Quality AssuranceProgram Oversight Laboratory (EQAPOL). Ref: Novitsky VA,Montano MA, McLane MF, Renjifo B, Vannberg F, Foley BT,Ndung'u TP, Rahman M, Makhema M, J., Marlink R, Essex M.Molecular cloning and phylogenetic analysis of HIV-1subtype C: a set of 23 full-length clones from Botswana.J. Virol. 1999;73(5):4427-4432.subtype: C | 1 | 231 | 6L,27I,41T,71D,116A,120S,124V,148V,169F,178T,180D,187D,203R,208G,210S,225S |
| KP109486 | DEMC99IN001 | India | 1999 | | genomic RNA | | initially isolated from a person from India;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,83L,115V,116A,120G,124V,128D,148S,154K,169F,178T,187D,203R,208G,225S |
| KP109487 | DEMC99IN002 | India | 1999 | | genomic RNA | | initially isolated from a person from India;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,96V,110S,116A,120G,124V,148V,169F,178T,180D,187D,203R,208G,210S,225S |
| KP109488 | DEMC99IN003 | India | 1999 | | genomic RNA | | initially isolated from a person from India;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,86I,91V,96I,116T,120G,124V,128D,148V,169F,178T,180D,187D,203R,208G,225S |
| KP109489 | DEMC99IN004 | India | 1999 | | genomic RNA | | initially isolated from a person from India;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: C | 1 | 231 | 6L,27I,36I,41T,71D,79D,83L,116A,120S,124V,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S |
| MT222959 | DEMCXXZA190 | South Africa | | | genomic RNA | | This virus was initially isolated from a personfrom South Africa. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: C | 1 | 231 | 6Q,11I,14N,27I,31G,41T,47S,50S,54M,58I,71D,83L,86A,87Q,91L,95H,96I,98D,116A,120S,124V,128D,148V,154K,169F,178T,187D,200S,203R,207A,208G,225S |
| MT222960 | DEMCXXZA193 | South Africa | | | genomic RNA | | This virus was initially isolated from a personfrom South Africa. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: C | 1 | 231 | 6M,27I,41T,45D,54A,58I,71D,83L,86I,110S,115V,116A,120G,128D,148V,154K,160S,169F,178T,187D,200I,204G,208G |
| KC596071 | DEMD07UG002 | Uganda | 2007 | | genomic RNA | | propagated from the infectious molecular clone(IMC) in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: D | 1 | 231 | 6L,14S,27I,83L,91V,110N,120S,148V,154K,180D,225S |
| KC596072 | DEMD08UG001 | Uganda | 2008 | | genomic RNA | | propagated from the infectious molecular clone(IMC) in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: D | 1 | 231 | 6L,27I,41T,83L,87Q,91N,92P,96I,110N,116A,120S,148V,180D,201L |
| KU749394 | DEMD10BR034 | Brazil | 2010 | | genomic RNA | | This virus was initially isolated (KJ787684) from aperson from Brazil. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref: Pessoa,R. et al; Transfusion. 2015May;55(5):980-90;subtype: D | 1 | 231 | 6L,27I,83L,91V,116A,120S,123A,148V,180D,208Q |
| JX140670 | DEMD10CM009 | Cameroon | 2010 | | genomic RNA | | subtype: D | 1 | 231 | 6L,15L,27I,29D,50A,73T,83L,91V,116A,120S,128D,148V,180D,208G,225S |
| KP109501 | DEMD10CM018 | Cameroon | 2010 | | genomic RNA | | initially isolated from a person from Cameroon;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: D | 1 | 231 | 6L,15L,27I,29D,50A,83L,91V,116A,120S,128D,148V,180D,208G,225S |
| KF716479 | DEMD10UG004 | Uganda | 2010 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: D | 1 | 231 | 6L,27I,83L,91V,148V,154K,180D,225S |
| KF716476 | DEMD11KE003 | Kenya | 2011 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: D | 1 | 231 | 6L,27I,33N,36I,58A,75D,83L,87Q,91H,92P,128D,148V,180D,183R,200N,205M,208G,225S |
| KF716480 | DEMD11UG003 | Uganda | 2011 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: D | 1 | 231 | 6L,27I,71D,83L,87Q,91V,110S,120S,148V,154K,177G,180D,205M,209~,225S |
| KU749395 | DEMF110BR015 | Brazil | 2010 | | genomic RNA | | This virus was initially isolated from a personfrom Brazil. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).Ref: Pessoa,R. et al; Transfusion. 2015 May;55(5):980-90;subtype: F1 | 1 | 231 | 14P,44A,71D,83L,92P,116Q,120S,124V,148V,169F,178T,183G,187D,208G |
| JX140671 | DEMF110ES001 | Spain | 2011 | | genomic RNA | | recent infection;subtype: F1 | 1 | 231 | 6L,71D,83L,92P,116Q,120S,124V,148V,169F,178T,183G,187D,208G |
| KU749396 | DEMF111BR037 | Brazil | 2011 | | genomic RNA | | This virus was initially isolated from a personfrom Brazil. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).Ref: Pessoa,R. et al; Transfusion. 2015 May;55(5):980-90;subtype: F1 | 1 | 231 | 6L,14S,15L,27I,41A,45D,71D,91V,92P,116Q,120S,124V,132K,148A,154K,169F,178T,187D,208G,210S,225S |
| MT222953 | DEMF115UK007 | United Kingdom | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom United Kingdom. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: F1 | 1 | 231 | 4P,6H,12Y,14S,15L,27I,44A,75D,83L,87Q,91V,96I,98D,116Q,148V,169F,178T,180D,187D,208G |
| JX140672 | DEMF210CM001 | Cameroon | 2010 | | genomic RNA | | subtype: F2 | 1 | 231 | 6L,27I,71D,92P,116A,120S,124V,128D,148V,154K,169F,171I,178T,187D,225S,230I |
| JX140673 | DEMF210CM007 | Cameroon | 2010 | | genomic RNA | | subtype: F2 | 1 | 231 | 6L,27I,54V,71D,87Q,92P,96I,116A,120S,124V,128D,148V,154K,169F,178T,183G,187D,208G |
| KU749420 | DEMF211CM025 | Cameroon | 2011 | | genomic RNA | | This virus was initially isolated from a personfrom Cameroon. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: F2 | 1 | 231 | 6L,14P,16T,44A,71D,83T,91A,92P,116A,120S,124V,148V,154K,169F,171I,177G,180D,187D,208G,210S,230I |
| JX140674 | DEMG05ES001 | Spain | 2005 | | genomic RNA | | recent infection;subtype: G | 1 | 231 | 6V,14P,15L,27I,41T,71D,83L,86P,87Q,91F,92P,96I,116A,124V,148V,154K,169F,178T,180D,187D,207T,208G,210S,225S |
| JX140675 | DEMG09ES002 | Spain | 2009 | | genomic RNA | | acute infection;subtype: G | 1 | 231 | 6A,71D,72A,83T,86P,87Q,92P,96I,113D,116R,120S,148V,154K,169F,178T,187D,203R,208G,217S |
| KF716477 | DEMG09KE001 | Kenya | 2009 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: G | 1 | 231 | 2V,6A,26A,41V,71D,83M,86Q,87Q,96I,116Q,120S,124V,148V,169F,171V,180D,183S,187D,207Q,208G,225S |
| JX140676 | DEMG10CM008 | Cameroon | 2010 | | genomic RNA | | subtype: G | 1 | 231 | 6A,10P,15L,41T,71D,83T,86Q,87Q,96I,110N,115V,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G |
| KY658701 | DEMG11CM046 | Cameroon | 2011 | | genomic RNA | | This virus was initially isolated from a personfrom Cameroon. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: G | 22 | 231 | 71D,83L,86Q,87Q,91L,92P,96I,100S,102G,116R,120S,148V,154K,169F,178T,183G,187D,203R,208G |
| KY953200 | DEMG11NG006 | Nigeria | 2011 | | genomic RNA | | This virus was initially isolated from a personfrom Nigeria. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: G | 1 | 231 | 6A,27I,41T,71D,83L,86Q,87Q,91F,92P,96I,116A,120S,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S,230I |
| KY953201 | DEMG11NG007 | Nigeria | 2011 | | genomic RNA | | This virus was initially isolated from a personfrom Nigeria. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: G | 1 | 231 | 6A,14S,15L,27I,41T,71D,75D,83L,86P,87Q,91L,92P,96I,110N,112A,116A,120S,148V,154K,169F,178T,183G,187D,203R,207A,208G,225S,230I |
| KY953202 | DEMG11NG008 | Nigeria | 2011 | | genomic RNA | | This virus was initially isolated from a personfrom Nigeria. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: G | 1 | 231 | 6A,15L,27I,41T,71D,83L,86A,87Q,96I,110N,116A,148V,154K,169F,178T,180D,187D,207S,208G,210S,230I |
| KY953204 | DEN02CM062 | Cameroon | 2002 | | genomic RNA | | This virus was propagated from the infectiousmolecular clone (IMC, AY532635) in PBMCs and was used toestablish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL);subtype: Group N | 1 | 231 | 2L,6A,11I,14P,15L,16T,27I,33N,41M,50A,72V,83T,87P,88V,91L,92P,96L,112L,115V,116T,120S,124V,132K,135V,140R,148V,152E,154K,180D,200Q,225A |
| KY953205 | DEOXXFR007 | France | | | genomic RNA | | This virus was propagated from the infectiousmolecular clone (IMC) in PBMCs and was used to establishthe global viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: Group O | 1 | 231 | 2V,4A,6A,14P,15L,26A,33N,36I,41M,48I,50Y,52I,58A,59I,64G,66L,68V,72V,79D,83T,86P,87A,88M,91L,92P,96I,100T,111Q,115M,116H,118I,120R,120R_G,122N,128D,131R,132K,135V,141M,143K,148V,154K,178T,200Q,208G,210N,216V,225T |
| KY953206 | DEOXXFR008 | France | | | genomic RNA | | This virus was propagated from the infectiousmolecular clone (IMC) in PBMCs and was used to establishthe global viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: Group O | 1 | 231 | 2V,4P,6A,15L,26A,33N,36I,41M,48I,50Y,52I,58A,64G,66L,68V,72V,83T,86I,87P,88V,91L,92P,96I,98D,100T,111Q,115V,116H,118I,119T_G,120S,122N,123S,128D,131R,132K,135V,141M,143K,148V,200Q,204S,208G,216I,225T |
| KY953207 | DEPXXFR006 | France | | | genomic RNA | | This virus was propagated from the infectiousmolecular clone (IMC) in PBMCs and was used to establishthe global viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: Group P | 1 | 231 | 6A,11T,13L,14P,15L,26A,33N,36I,41M,47S,48I,50D,52I,58A,64G,66L,68V,72V,83T,87P,88V,91L,92P,96L,98D,100T,102G,110N,111K,116T,118T,119T_R,122N,128D,131R,132K,135V,141V,143K,148I,154K,183S,187D,191I,200Q,208G,216N,225T |
| KF716464 | DEURF06CM001 | Cameroon | 2006 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: URF_01A1G | 1 | 231 | 6A,15V,31G,33N,54M,58I,71D,83T,91V,96I,116A,120S,148V,169F,178T,180D,187D,200S,203R,208G,225S |
| KU749427 | DEURF06KE011 | Kenya | 2006 | | genomic RNA | | This virus was initially isolated (KC018920) from aperson from Kenya. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref: Price, M. et al; AIDS Res. Hum.Retroviruses 27 (1), 5-12 (2011);subtype: URF_A1A2D | 1 | 231 | 6A,14P,71D,92P,107S,120S,123A,148V,169F,178T,187D,200A,203R,208G,225S |
| KU749428 | DEURF06RW006 | Rwanda | 2006 | | genomic RNA | | This virus was initially isolated (KC018540) from aperson from Rwanda. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref: Price, M. et al; AIDS Res. Hum.Retroviruses 27 (1), 5-12 (2011);subtype: URF_A1C | 1 | 231 | 6A,11I,14N,15L,27I,41T,45D,50S,54M,58I,71D,83L,87Q,92P,111T,115L,120S,128D,148V,154K,169F,180D,183G,191I,200S,203R,207A,208G,225S |
| KY658686 | DEURF07AR001 | Argentina | 2007 | | genomic RNA | | This virus was initially isolated from a personfrom Argentina. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref. Socias et al. J Int AIDS Soc. 2011 Aug10;14:40. doi: 10.1186/1758-2652-14-40.subtype: URF_BD | 1 | 231 | 6L,14S,15L,83L,91V,148V,154K,180D |
| KC596068 | DEURF07BR002 | Brazil | 2007 | | genomic RNA | | subtype: URF_BC | 1 | 231 | 6L,15M,27I,41T,71D,86P,87Q,91V,96I,116T,120S,154K,169F,178T,180D,187D,203R,208G,210S |
| KU749397 | DEURF07BR043 | Brazil | 2007 | | genomic RNA | | This virus was initially isolated (KJ849824) from aperson from Brazil. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref: Pessoa,R. et al; Transfusion. 2015May;55(5):980-90;subtype: URF_CF | 1 | 231 | 6L,14S,15M,17A,27I,41T,71D,91P,96L,115V,116A,120A,124V,148V,154K,169F,178T,180D,187D,203R,208G |
| JX140677 | DEURF07ES002 | Spain | 2007 | | genomic RNA | | acute infection;subtype: CRFO2_AG/A3 | 1 | 231 | 6A,14S,15M,27I,41T,54M,58I,71D,87Q,92P,96I,120S,124V,135V,148V,149G,154K,169F,171C,178T,200S,203R,208G |
| KU749429 | DEURF07KE014 | Kenya | 2007 | | genomic RNA | | This virus was initially isolated (KC018597) from aperson from Kenya. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref: Price, M. et al; AIDS Res. Hum.Retroviruses 27 (1), 5-12 (2011);subtype: URF_A1A2C | 1 | 231 | 6A,10P,14P,15L,71D,91V,92P,120G,148V,169F,178T,187D,200S,203R,208G,225S |
| KC596073 | DEURF07UG006 | Uganda | 2007 | | genomic RNA | | propagated from the infectious molecular clone(IMC) in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: AD | 1 | 231 | 6A,27I,41A,79D,83Q,91V,116A,120S,124V,148V,180D,225S |
| KF716465 | DEURF08CM005 | Cameroon | 2008 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: URF_A1G | 1 | 231 | 6A,14S,15M,27I,41T,54M,58I,71D,83T,87Q,92P,98D,120G,124V,135V,148V,169F,178T,200S,203R,208G |
| KU749408 | DEURF08ES008 | Spain | 2008 | | genomic RNA | | This virus was initially isolated from a personfrom Spain. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: URF_BF1 | 1 | 231 | 6L,148I,180D,225S,230I |
| KU749430 | DEURF08KE018 | Kenya | 2008 | | genomic RNA | | This virus was initially isolated (KC018732) from aperson from Kenya. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref: Price, M. et al; AIDS Res. Hum.Retroviruses 27 (1), 5-12 (2011);subtype: URF_A1CD | 1 | 231 | 2V,6L,15L,27I,36I,41T,71D,79D,83A,91V,115V,116A,120G,123A,148V,169F,178T,187D,207T,208G |
| KF716493 | DEURF08RU001 | Russia | 2008 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: URF_A1G | 1 | 231 | 6A,11T,14S,15M,27I,41T,54M,58I,71D,83I,91N,92P,120S,135V,148V,169F,178T,200S,203R,208G |
| KY658698 | DEURF08TZ006 | Tanzania | 2008 | | genomic RNA | | This virus was initially isolated from a personfrom Tanzania. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_A1D | 1 | 231 | 6A,11I,14S,15L,27I,58V,71D,83L,92P,111P,112H,115V,116Q,120A,128D,148V,154K,169F,171V,177G,178T,187D,200S,208G |
| KY658699 | DEURF08TZ009 | Tanzania | 2008 | | genomic RNA | | This virus was initially isolated from a personfrom Tanzania. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_A1C | 1 | 231 | 2V,6A,11I,14N,15L,27I,50G,54M,58I,71D,83M,87Q,92P,96I,111P,115L,116Q,120G,128D,148V,154K,169F,171A,178T,180D,187D,200S,207S,208G |
| KU749398 | DEURF09BR014 | Brazil | 2009 | | genomic RNA | | This virus was initially isolated (KJ671534) from aperson from Brazil. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref: Pessoa,R. et al; Transfusion. 2015May;55(5):980-90;subtype: URF_BF1 | 1 | 231 | 6L,14P,16T,44A,71D,87Q,92P,96I,116Q,120G,148V,169F,178T,183G,187D,203R,208G,225S |
| JX140678 | DEURF09ES005 | Spain | 2009 | | genomic RNA | | subtype: A1B (URF) | 1 | 231 | 6M,52I,83L,86Q,87Q,96I,116T,120S,134V,136M,148I,180D |
| KC473845 | DEURF09GQ001 | Spain | 2009 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: A1DG (URF) | 1 | 231 | 6A,27I,41T,71D,75D,83L,92P,116A,120G,124V,148V,154K,169F,178T,200S,203R,207A,208G |
| KF716468 | DEURF09KE002 | Kenya | 2009 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: URF_A1D | 1 | 231 | 6A,11I,15L,27I,30R,31G,50G,54M,58I,71D,79D,83L,87Q,92P,111P,120S,148V,154K,169F,178T,183G,200S,207A,208G,225S |
| KY953203 | DEURF09NG004 | Nigeria | 2009 | | genomic RNA | | This virus was initially isolated from a personfrom Nigeria. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: URF_GK | 1 | 231 | 6A,14P,41T,71D,75D,83L,86A,87Q,91V,96I,98D,116A,120S,154K,169F,178T,180D,187D,203R,208G,225S |
| KF859746 | DEURF09UG002 | Uganda | 2009 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: URF_A1D | 1 | 231 | 6L,15L,27I,31S,83L,87Q,110N,115V,116A,120A,148V,180D,225S |
| KF716481 | DEURF09UG004 | Uganda | 2009 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: URF_A1D | 1 | 231 | 6L,27I,83L,148V,180D,225S |
| KF859747 | DEURF09UG005 | Uganda | 2009 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: URF_A1D | 1 | 231 | 6L,14P,15L,16T,27I,31N,41T,54V,83L,91V,96L,110N,120S,135V,148V,149G,154K,178T,203R,208G,210S,225S |
| KP109491 | DEURF09UG014 | Uganda | 2009 | | genomic RNA | | initially isolated from a person from Uganda;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: URF_A1D | 1 | 231 | 6A,14S,15L,27I,29D,31G,41T,54M,58I,71D,83L,86I,87Q,91L,92P,96L,111I,116A,128D,129L,148V,154K,169F,180D,187Q,200S,203R,208G,225S |
| KP109492 | DEURF09UG015 | Uganda | 2009 | | genomic RNA | | initially isolated from a person from Uganda;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: URF_A1D | 1 | 231 | 2V,6A,11I,15L,26A,30R,31G,54M,58I,59I,71D,79D,83A,92P,111I,120G,148V,153V,154K,169F,171I,178T,183G,187D,200S,208G,225S |
| KP109502 | DEURF10CM020 | | | | genomic RNA | | subtype: G,A1,01_AE,C | 1 | 231 | 6A,27I,41T,71D,83T,86Q,87Q,91F,92P,96L,116T,148V,154K,169F,178T,180D,187D,203R,208G |
| KU749421 | DEURF10CM024 | Cameroon | 2010 | | genomic RNA | | This virus was initially isolated from a personfrom Cameroon. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_A1GF2 | 1 | 231 | 6A,11T,15L,31G,33N,54M,58I,71D,83L,92P,110N,120S,128D,148V,169F,171C,187D,200S,207T,208G |
| JX140679 | DEURF10DZ001 | Spain | 2010 | | genomic RNA | | subtype: CRF02_AG/CRF06_cpx | 1 | 231 | 6A,10P,27I,41T,54M,58I,71D,87Q,92P,96I,116K,135V,148V,169F,178T,203R,208G,225S |
| KY658703 | DEURF10HA002 | | | | genomic RNA | | | 1 | 231 | 6L,14T,15M,27I,79D,83M,120S,148A,178T,183Q |
| KF716469 | DEURF10KE001 | Kenya | 2010 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: URF_A1 C | 1 | 231 | 6A,14N,15L,27I,31G,41T,58I,71D,79D,83L,87Q,92P,96L,111P,115M,120S,148V,169F,178T,180D,200S,203R,207Q,208G,225S |
| KF716470 | DEURF10KE002 | Kenya | 2010 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: URF_A1CD | 1 | 231 | 6A,10W,11I,14N,15L,27I,54M,58I,71D,83L,92P,94N,96L,111P,115L,116Q,120G,128D,148V,169F,178T,200S,203R,207A,208G |
| KF716471 | DEURF10KE003 | Kenya | 2010 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: URF_A1 C | 1 | 231 | 6A,14N,15L,27I,31G,41T,58I,71D,79D,83L,87Q,92P,96L,111P,115M,120S,148V,169F,178T,180D,200S,203R,208G |
| KF716487 | DEURF10UG005 | Uganda | 2010 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: URF_A1D | 1 | 231 | 2V,6A,11I,12Y,15L,33N,54M,56M,58V,70R,83L,87Q,92P,96I,107I,111V,115V,120S,128D,131R,148V,154K,171V,180D |
| KF716488 | DEURF10UG006 | Uganda | 2010 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: URF_A1G | 1 | 231 | 6A,11I,14S,15M,27I,36I,50G,58I,71D,92P,120S,128D,148V,169F,171A,177G,178T,194T,200S,208G,225S |
| KF716489 | DEURF10UG007 | Uganda | 2010 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: URF_A1CD | 1 | 231 | 6L,27I,83L,91V,98D,120S,148V,180D,225S |
| KF716490 | DEURF10UG008 | Uganda | 2010 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: URF_A1D | 1 | 231 | 6L,11I,15L,27I,41T,50G,59I,83L,87Q,120S,148V,149N,193H,208G,230I |
| KF716482 | DEURF10UG011 | Uganda | 2010 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: URF_A1D | 1 | 231 | 6L,15L,27I,50A,83L,94N,96I,110N,116A,120S,128D,148V,154K,180D,183T,225S |
| KF716483 | DEURF10UG012 | Uganda | 2010 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: URF_A1D | 1 | 231 | 6L,14P,27I,29D,41T,83T,91V,116A,120G,123A,128D,148V,171V,180D,208G,225S |
| KP109493 | DEURF10UG016 | Uganda | 2010 | | genomic RNA | | initially isolated from a person from Uganda;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: URF_A1D | 1 | 231 | 6A,11I,14G,15M,27I,31G,41T,50G,54M,58I,71D,83L,86A,92Q,111P,120G,128D,135V,148V,154K,169F,171C,178T,183G,200S,203R,207T,208G |
| KC473836 | DEURF10US008 | USA | 2010 | | genomic RNA | | subtype: URF (A1B) | 1 | 231 | 6L,83L,178T,230I |
| KP109503 | DEURF11CM015 | Cameroon | 2011 | | genomic RNA | | initially isolated from a person from Cameroon;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: URF_01A1GJU | 1 | 231 | 6A,15L,27I,29D,54M,58I,83L,87Q,92P,96I,111P,116A,120G,122N,124V,128D,131R,148V,169F,178T,180D,190M,191I,203R,208G,225S |
| KU749422 | DEURF11CM026 | Cameroon | 2011 | | genomic RNA | | This virus was initially isolated from a personfrom Cameroon. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_F1F2 | 1 | 231 | 6L,14AT,27I,71D,83L,86A,87Q,116A,120S,124V,148V,154K,169F,178T,183G,187D,208G,210S,230I |
| MH078551 | DEURF11HT001 | Haiti | 2011 | | genomic RNA | | This virus was initially isolated from a personfrom Haiti. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).Ref. (1) Deschamps MM, Zorrilla CD, Morgan CA, DonastorgY, Metch B, Madenwald T, Joseph P, Severe K, Garced S,Perez M, Escamilia G, Swann E, Pape JW; HVTN 907 ProtocolTeam. Recruitment of Caribbean female commercial sexworkers at high risk of HIV infection. Rev Panam SaludPublica. 2013 Aug;34(2):92-8 Ref. (2) Deschamps MM, MetchB, Morgan C, Zorilla CD, Donastorg Y, Swann E, Taina D,Patrice J, Pape JW on behalf of the HVTN 907 Study Team.Feasibility of Identifying a Female Sex Worker Cohort atHigh Risk of HIV Infection in the Caribbean for HIVVaccine Efficacy Trials: Longitudinal Results of HVTN 907.J Acquir Immune Defic Syndr. 2016 Jan 1;71(1):70-7.subtype: URF_BG | 1 | 231 | 6L,44A,50G,59I,83L,87Q,120S,148V,180D,208N |
| KU749431 | DEURF11KE020 | Kenya | 2011 | | genomic RNA | | This virus was initially isolated (KC018723) from aperson from Kenya. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref: Price, M. et al; AIDS Res. Hum.Retroviruses 27 (1), 5-12 (2011);subtype: URF_A1C | 1 | 231 | 6A,11I,14N,15L,27I,54M,58I,71D,83L,87Q,91V,92P,111P,120S,128D,148V,154K,169F,178T,183G,203R,204S,207T,208G,230I |
| MH078558 | DEURF11NG005 | Nigeria | 2011 | | genomic RNA | | This virus was initially isolated from a personfrom Nigeria. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: URF_45A1 | 1 | 231 | 6A,14P,15L,27I,31G,33N,54M,58I,59I,71D,83L,91V,92P,110N,120S,128D,129L,148V,169F,178T,203R,208G,210S |
| MH078559 | DEURF11NG011 | Nigeria | 2011 | | genomic RNA | | This virus was initially isolated from a personfrom Nigeria. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: URF_0109A3 | 1 | 231 | 6A,14S,27I,41T,54M,58I,71D,91N,92P,93V,96L,120S,135V,148V,169F,178T,200S,208G |
| MT222939 | DEURF11NG012 | Nigeria | 2011 | | genomic RNA | | This virus was initially isolated from a personfrom Nigeria. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: URF_02G | 1 | 231 | 6A,11T,14S,15M,27I,54M,58I,71D,83L,86A,87Q,91F,92P,120S,148V,169F,178T,200A,207S,208G |
| MT222940 | DEURF11NG013 | Nigeria | 2011 | | genomic RNA | | This virus was initially isolated from a personfrom Nigeria. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: URF_02G | 1 | 231 | 2V,6A,11I,14S,15V,31G,41T,58I,71D,83I,86I,91N,92P,111T,120S,135V,148V,154K,169F,177G,178T,200S,203R,208G |
| KF716473 | DEURF11RW001 | Rwanda | 2011 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: URF_CD | 1 | 231 | 6L,15L,27I,36I,41T,71D,83M,91V,116A,124V,128D,146C,148V,154K,169F,178T,207T,208G,225S |
| KP109497 | DEURF11UG002 | Uganda | 2011 | | genomic RNA | | initially isolated from a person from Uganda;propagated in PBMCs and used to establish the global viraldiversity panel for External Quality Assurance ProgramOversight Laboratory (EQAPOL);subtype: URF_A1D | 1 | 231 | 6V,27I,83L,96L,116A,123A,148V,154K,178T,180D,225S |
| KF716484 | DEURF11UG004 | Uganda | 2011 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: URF_A1D | 1 | 231 | 6L,14N,15M,27I,54M,58I,72V,83L,91V,120G,123A,148V,154K,180D,183S,208G,225S |
| KF716485 | DEURF11UG006 | Uganda | 2011 | | genomic RNA | | propagated in PBMCs and used to establish theglobal viral diversity panel for External QualityAssurance Program Oversight Laboratory (EQAPOL);subtype: URF_A1D | 1 | 231 | 6A,14S,15L,16T,27I,54M,58V,71D,83L,86I,96I,111P,116A,120G,120G_SQG,122Q,128D,148V,154K,169F,171V,180D,183G,187D,207A,208G,225S |
| KY658687 | DEURF12AR009 | Argentina | 2012 | | genomic RNA | | This virus was initially isolated from a personfrom Argentina. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref. Socias et al. J Int AIDS Soc. 2011 Aug10;14:40. doi: 10.1186/1758-2652-14-40.subtype: URF_BF1 | 1 | 231 | 6L,14G,15L,58S,71D,92P,115V,116Q,120S,124V,169F,178T,187D,208G,230I |
| MT222941 | DEURF12NG016 | Nigeria | 2012 | | genomic RNA | | This virus was initially isolated from a personfrom Nigeria. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: URF_0206 | 1 | 231 | 6A,15L,27I,31G,33N,41T,54M,58I,71D,83T,92P,110N,113D,120G,135V,148V,154K,169F,178T,180D,203R,208G,225S |
| MH078534 | DEURF13AR007 | Argentina | 2013 | | genomic RNA | | This virus was initially isolated from a personfrom Argentina. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref. Socias et al. J Int AIDS Soc. 2011 Aug10;14:40. doi: 10.1186/1758-2652-14-40.subtype: URF_BF1 | 1 | 231 | 6L,14S,15L,71D,83L,92P,116Q,120S,124V,148V,154K,169F,171A,178T,180D,183G,200I,204G,207T,208G |
| MH078556 | DEURF13PE006 | Peru | 2013 | | genomic RNA | | This virus was initially isolated from a personfrom Peru. It was then propogated in PBMCs and was used toestablish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).subtype: URF_BF1 | 1 | 231 | 6M,71D,75D,83T,92P,116Q,120S,124V,169F,178T,183G,187D,207S,208G,211I |
| KU749418 | DEURF13ZA135 | South Africa | 2013 | | genomic RNA | | This virus was initially isolated from a personfrom South Africa. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_CU | 1 | 231 | 6A,27I,31G,41T,49S,50H,71D,83L,116A,118I,120G,148V,154K,160S,169F,178T,187D,200A,203R,207Q,208G,210S,225S |
| MH078535 | DEURF14AR011 | Argentina | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Argentina. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL). Ref. Socias et al. J Int AIDS Soc. 2011 Aug10;14:40. doi: 10.1186/1758-2652-14-40.subtype: URF_12B | 1 | 231 | 6H,11T,12Y,14S,15L,71D,83L,92P,116Q,120S,124V,148V,169F,178T,183G,187D,191I,208G,210S |
| MH078547 | DEURF14GW011 | Guinea-Bissau | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Guinea-Bissau. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_02A3 | 1 | 231 | 6A,11I,12Y,14S,15L,27I,33N,54M,58V,71D,92P,111P,120S,124V,131R,148V,154K,169F,178T,200N,203R,208G |
| MH078548 | DEURF14GW012 | Guinea-Bissau | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Guinea-Bissau. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_02A3 | 1 | 231 | 6A,14S,15M,27I,31G,41T,54M,58I,71D,83I,92P,120S,124V,135V,148V,154K,169F,178T,180D,203R,204G,207Q,208G |
| MH078549 | DEURF14GW016 | Guinea-Bissau | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Guinea-Bissau. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_02A3 | 1 | 231 | 6A,14S,27I,41T,54M,58I,71D,83T,87Q,92P,120S,135V,148V,169F,180D,207S,208G |
| MH078550 | DEURF14GW019 | Guinea-Bissau | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Guinea-Bissau. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_02A3 | 1 | 231 | 6A,14S,41T,54M,58I,71D,91A,92P,120S,124V,135V,154K,169F,178T,180D,203R,208G,217S |
| MN703131 | DEURF14GW036 | Guinea-Bissau | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Guinea-Bissau. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_02A3 | 1 | 231 | 6A,10L,11T,14P,15V,27I,41T,54M,58I,71D,83T,92P,115M,120S,124V,132K,135V,148V,169F,171A,178T,180D,194S,203R,208G |
| MN703132 | DEURF14GW040 | Guinea-Bissau | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Guinea-Bissau. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_02A3 | 1 | 231 | 6A,14S,27I,41T,54M,58I,71D,83T,92P,120S,124V,135V,148V,169F,178T,180D,203R,208G,225S |
| KU749413 | DEURF14PK006 | Pakistan | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Pakistan. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_02A1 | 1 | 231 | 6A,10L,14AS,15M,27I,36I,58V,71D,72A,83L,86I,116A,120G,128D,148V,154K,169F,171V,178T,183G,200A,203R,207T,208G,211I |
| KY658717 | DEURF14PK012 | Pakistan | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Pakistan. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_A1G | 1 | 231 | 6A,14S,15M,27I,41T,54M,58I,71D,79D,83L,86A,87Q,91L,92P,110N,120S,148V,149G,154K,163E,169F,200S,203R,208G,225S |
| KU749414 | DEURF14PK015 | Pakistan | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Pakistan. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_02A1 | 1 | 231 | 6A,10F,11I,15V,27I,41T,54M,58I,71D,83L,87Q,91N,92P,111I,116A,120A,128D,154K,169F,178T,203R,208G |
| MT222950 | DEURF14RU010 | Russia | 2014 | | genomic RNA | | This virus was initially isolated from a personfrom Russia. It was then propogated in PBMCs and was usedto establish the global viral diversity panel for ExternalQuality Assurance Program Oversight Laboratory (EQAPOL).This virus was contributed by URBAN ARCH Consortium.subtype: URF_A6B | 1 | 231 | 6A,14S,27I,54M,58I,71D,83L,86A,87Q,91F,92P,98D,120S,128D,148V,169F,178T,180D,203R,208G |
| MT222938 | DEURF15CM057 | Cameroon | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom Cameroon. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_A1A3H | 1 | 231 | 6A,15M,27I,54M,58I,71D,92P,120G,128D,148V,169F,171AV,178ST,180D,200S,207T,208G,225S |
| KY658692 | DEURF15PH001 | Philippines | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom Phillipines. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_01B | 1 | 231 | 6L,27I,83L,148V,154K,180D,200I,204S,225S |
| KY658691 | DEURF15PH005 | Philippines | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom Phillipines. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL);subtype: URF_01B | 1 | 231 | 6A,14P,15V,31G,33N,54M,58I,79D,92P,120S,128D,148V,178T,204S,207T,208G,225S |
| KY658718 | DEURF15PK023 | Pakistan | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom Pakistan. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_A1G | 1 | 231 | 2V,6A,14S,15M,31G,37V,41T,54M,58I,71D,83T,86A,87Q,91F,92P,110N,120S,135V,139H,148V,149G,154K,169F,178T,187D,200S,203R,208G,225S |
| KY658719 | DEURF15PK033 | Pakistan | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom Pakistan. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_A1G | 1 | 231 | 6A,9H,10F,15V,27I,54M,58I,71D,83L,111P,116A,120A,128D,154K,169F,171C,178T,183G,203R,207T,208G |
| MT222943 | DEURF15PK040 | Pakistan | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom Pakistan. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_02A1 | 1 | 231 | 6A,14S,15M,27I,54M,58I,71D,91V,92P,120S,124V,148V,149G,154K,169F,178T,200S,203R,208G,225S |
| MN703141 | DEURF15UK004 | United Kingdom | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom United Kingdom. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_BF1 | 1 | 231 | 4P,6H,11I,12Y,14S,15L,27I,44A,75D,83L,87Q,91V,96I,112P,116Q,120S,143K,148V,169F,171A,178T,180D,187D,208G,210N |
| MN703142 | DEURF15UK005 | United Kingdom | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom United Kingdom. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_06A3 | 1 | 231 | 6A,14S,15M,27I,29D,41T,54M,58I,71D,83I,87Q,92P,96I,116T,118I,120S,135V,148V,154K,169F,180D,183G,187D,207T,208G,225S |
| MN703143 | DEURF15UK006 | United Kingdom | 2015 | | genomic RNA | | This virus was initially isolated from a personfrom United Kingdom. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_06A3 | 1 | 231 | 6A,14S,15M,27I,29D,41T,54M,58I,71D,87Q,92P,96I,116T,124V,135V,148V,154K,169F,180D,183G,187D,191I,207T,208G,225S |
| MH078537 | DEURF16CI004 | Cote d'Ivoire | 2016 | | genomic RNA | | This virus was initially isolated from a personfrom Ivory coast. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_0209 | 1 | 231 | 6A,10W,11T,14S,27I,50G,54M,58I,59I,71D,83T,86A,87Q,91H,92P,96L,98D,111I,120S,148V,169F,178T,180D,203R,208G,225S,230I |
| MH078538 | DEURF16CI011 | Cote d'Ivoire | 2016 | | genomic RNA | | This virus was initially isolated from a personfrom Ivory coast. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_0209 | 1 | 231 | 6A,9H,14S,15L,27I,47T,54M,58I,71D,83A,92P,120S,124V,131R,148V,154K,169F,171C,178T,191I,200S,203R,208G,225S |
| MH078539 | DEURF16CI022 | Cote d'Ivoire | 2016 | | genomic RNA | | This virus was initially isolated from a personfrom Ivory coast. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_0209 | 1 | 231 | 6A,14T,15M,27I,41T,54M,58I,71D,87Q,91H,92P,96I,110N,116T,120S,135V,148V,154K,169F,178T,200S,203R,208G,210S,225S |
| MH078557 | DEURF16PE007 | | | | genomic RNA | | subtype: F1,B | 1 | 231 | 6L,16T,26A,27I,30R,36I,44A,54L,71D,83I,91A,92P,120S,124V,148V,154K,169F,178T,187D,203R,208G,217S |
| MH078563 | DEURF16PH009 | Philippines | 2016 | | genomic RNA | | This virus was initially isolated from a personfrom Phillipines. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_01B | 1 | 231 | 6A,14P,15V,31G,33N,54M,58I,86I,87Q,92P,96I,116A,120S,128D,148V,178T,204S,207T,208G |
| MH078564 | DEURF16PH011 | Philippines | 2016 | | genomic RNA | | This virus was initially isolated from a personfrom Phillipines. It was then propogated in PBMCs and wasused to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_01B | 1 | 231 | 6A,14P,15V,31G,33N,54M,58I,79D,83L,87Q,92P,96I,120S,128D,148V,178T,204S,207T,208G,210S,225S |
| MN703144 | DEURF16UK009 | United Kingdom | 2016 | | genomic RNA | | This virus was initially isolated from a personfrom United Kingdom. It was then propogated in PBMCs andwas used to establish the global viral diversity panel forExternal Quality Assurance Program Oversight Laboratory(EQAPOL).subtype: URF_A1BD | 1 | 231 | 6L,27I,83L,87Q,120S,148V,178T |
