Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Parrish (2012)	Transmitted/Founder and Chronic Subtype C HIV-1 Use CD4 and CCR5 Receptors with Equal Efficiency and Are Not Inhibited by Blocking the Integrin alpha4beta7	PLoS Pathog. 8 (5), E1002686 (2012)	8.16e-148	102	14	Naive	Plasma	SGS	Acute infection

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Accession	IsolateName	Country	Coll Date	MolType	Note	FirstAA	LastAA	MutList
JQ779256	702010432.gp12	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,13H,14P,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S
JQ779257	702010432.gp13	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,13H,14P,15L,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S
JQ779258	702010432.gp14	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,13H,14P,15L,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S
JQ779259	702010432.gp15	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,13H,14P,15L,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S
JQ779260	702010432.gp16	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,13H,14P,15L,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S
JQ779261	702010432.gp17	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,13H,14P,15L,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S
JQ779262	702010432.gp18	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,13H,14P,15L,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S
JQ779263	702010432.gp20	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,13H,14P,15L,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S
JQ779264	702010432.gp21	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,14P,41T,50H,71D,91Q,110N,116A,120S,128D,136M,148V,154K,169F,171A,177G,178T,187D,203R,204G,208G,210S,225S
JQ779265	702010432.gp22	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,13H,14P,15L,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S
JQ779266	702010432.gp23	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,13H,14P,15L,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,213G,225S
JQ779267	702010432.gp24	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,14P,41T,50H,71D,91Q,110N,116A,120S,128D,136M,148V,154K,169F,171A,177G,178T,187D,203R,204G,208G,210S,225S
JQ779268	702010432.gp25	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,13H,14P,15L,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S
JQ779269	702010432.gp26	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,13H,14P,15L,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S
JQ779270	702010432.gp27	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,13H,14P,15L,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S
JQ779271	702010432.gp28	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,13H,14P,15L,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S
JQ779272	702010432.gp29	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,13H,14P,15L,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S
JQ779273	702010432.gp30	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,14P,41T,50H,71D,91Q,110N,116A,120S,128D,136M,148V,154K,169F,171A,177G,178T,187D,203R,204G,208G,210S,225S
JQ779274	702010432.gp31	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,13H,14P,15L,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S
JQ779275	702010432.gp32	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,13H,14P,15L,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S
JQ779276	702010432.gp33	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,14P,41T,50H,71D,91Q,110N,116A,120S,128D,136M,148V,154K,169F,171A,177G,178T,187D,203R,204G,208G,210S,225S
JQ779277	702010432.gp34	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,14P,41T,50H,71D,91Q,110N,116A,120S,128D,136M,148V,154K,169F,171A,177G,178T,187D,203R,204G,208G,210S,225S
JQ779278	702010432.gp35	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,13H,14P,15L,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,213G,225S
JQ779279	702010432.gp36	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,14P,41T,50H,71D,91Q,110N,116A,120S,128D,136M,148V,154K,169F,171A,177G,178T,187D,203R,204G,208G,210S,225S
JQ779280	702010432.gp37	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	5D,6P,13H,14P,15L,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S
JQ779281	702010432.gp38	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,13H,14P,15L,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S
JQ779282	702010432.gp39	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,13H,14P,15L,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S
JQ779283	702010432.gp40	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,13H,14P,15L,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S
JQ779284	702010432.gp41	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,13H,14P,15L,41T,50H,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S
JQ779285	702010432.gp42	Malawi	07-May-2008	genomic RNA	subtype: C	1	231	6P,13H,14P,15L,41T,50H,68T,71D,83L,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,180D,187D,200I,203R,204G,208G,225S
JQ779098	703010256.gp1	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JQ779099	703010256.gp10	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JQ779100	703010256.gp11	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31X,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JQ779101	703010256.gp12	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JQ779102	703010256.gp13	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,170R,178T,180D,187D,203R,208G,225S
JQ779103	703010256.gp14	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JQ779104	703010256.gp15	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,170R,178T,180D,187D,203R,208G,225S
JQ779105	703010256.gp16	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JQ779106	703010256.gp17	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JQ779107	703010256.gp18	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,170R,178T,180D,187D,203R,208G,225S
JQ779108	703010256.gp19	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JQ779109	703010256.gp2	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JQ779110	703010256.gp20	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,170R,178T,180D,187D,203R,208G,225S
JQ779111	703010256.gp21	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,190F,203R,208G,225S
JQ779112	703010256.gp22	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JQ779113	703010256.gp23	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JQ779114	703010256.gp24	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JQ779115	703010256.gp25	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,170R,178T,180D,187D,203R,208G,225S
JQ779116	703010256.gp26	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JQ779117	703010256.gp27	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JQ779118	703010256.gp28	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,170R,178T,180D,187D,203R,208G,225S
JQ779119	703010256.gp29	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,170R,178T,180D,187D,203R,208G,225S
JQ779120	703010256.gp3	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,170R,178T,180D,187D,203R,208G,225S
JQ779121	703010256.gp30	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JQ779122	703010256.gp4	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JQ779123	703010256.gp5	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,170R,178T,180D,187D,203R,208G,225S
JQ779124	703010256.gp6	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	5T,6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,170R,178T,180D,187D,203R,208G,225S
JQ779125	703010256.gp7	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JQ779126	703010256.gp8	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,170R,178T,180D,187D,203R,208G,225S
JQ779127	703010256.gp9	Malawi	30-Jun-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,87Q,91V,96I,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JQ779206	705010534.p39	South Africa	26-Aug-2008	genomic RNA	subtype: C	1	231	6L,14P,41T,75D,83L,91V,108S,116A,120S,128D,148V,154K,169F,177S,178T,200G,203R,208H,211I,225S
JQ779207	705010534.p4	South Africa	26-Aug-2008	genomic RNA	subtype: C	1	231	6L,14P,41T,75D,83L,91V,108S,116A,120S,128D,148V,154K,169F,177S,178T,200G,203R,208H,211I,225S
JQ779208	705010534.p42	South Africa	26-Aug-2008	genomic RNA	subtype: C	1	231	6L,14P,41T,75D,77I,83L,91V,102T,116A,120S,128D,148V,154K,169F,177S,178T,200G,203R,208H,211I,225S
JQ779209	705010534.p43	South Africa	26-Aug-2008	genomic RNA	subtype: C	1	231	6L,14P,41T,75D,77I,83L,91V,102T,116A,120S,128D,148V,154K,169F,177S,178T,200G,203R,208H,211I,225S
JQ779210	705010534.p44	South Africa	26-Aug-2008	genomic RNA	subtype: C	1	231	6L,14P,41T,74T,75D,77I,83L,91V,102T,116A,120S,128D,148V,154K,169F,177S,178T,187D,191I,200S,203R,207H,208G,211I,225S
JQ779211	705010534.p45	South Africa	26-Aug-2008	genomic RNA	subtype: C	1	231	6L,14P,41T,75D,83L,91V,108S,116A,120S,128D,148V,154K,169F,177S,178T,200G,203R,208H,211I,225S
JQ779212	705010534.p47	South Africa	26-Aug-2008	genomic RNA	subtype: C	1	231	6L,41T,71D,75D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,200N,203R,207A,208G,210S,211I,225S
JQ779213	705010534.p48	South Africa	26-Aug-2008	genomic RNA	subtype: C	1	231	6L,14P,41T,75D,77I,83L,91V,102T,116A,120S,128D,148V,154K,169F,177S,178T,200G,203R,208H,211I,225S
JQ779214	705010534.p50	South Africa	26-Aug-2008	genomic RNA	subtype: C	1	231	6L,14P,41T,75D,77I,83L,91V,102T,116A,120S,128D,148V,154K,169F,177S,178T,200G,203R,208H,211I,225S
JQ779215	705010534.p52	South Africa	26-Aug-2008	genomic RNA	subtype: C	1	231	6L,41T,71D,75D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,200S,203R,207T,208G,211I,225S
JQ779216	705010534.p55	South Africa	26-Aug-2008	genomic RNA	subtype: C	1	231	6L,41T,71D,83L,91V,116T,120S,128D,148V,154K,165MV,169F,177S,178T,200G,203R,208S,210S,225S
JQ779217	705010534.p57	South Africa	26-Aug-2008	genomic RNA	subtype: C	1	231	6L,41T,71D,75D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,200S,203R,207T,208G,211I,225S
JQ779218	705010534.p6	South Africa	26-Aug-2008	genomic RNA	subtype: C	1	231	6L,14P,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,200G,203R,208S,210S,225S
JQ779219	705010534.p60	South Africa	26-Aug-2008	genomic RNA	subtype: C	1	231	6L,14S,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,200G,203R,208S,210S,225S
JQ779220	705010534.p61	South Africa	26-Aug-2008	genomic RNA	subtype: C	1	231	6L,14P,41T,75D,77I,83L,91V,102T,116A,120S,128D,148V,154K,169F,177S,178T,200G,203R,208H,211I,225S
JQ779221	705010534.p62	South Africa	26-Aug-2008	genomic RNA	subtype: C	1	231	6L,14P,41T,75D,83L,91V,108S,116A,120S,128D,148V,154K,169F,177S,178T,200G,203R,208H,211I,225S
JQ779222	705010534.p65	South Africa	26-Aug-2008	genomic RNA	subtype: C	1	231	6L,14P,41T,75D,83L,91V,108S,116A,120S,128D,148V,154K,169F,177S,178T,200G,203R,208H,211I,225S
JQ779223	705010534.p7	South Africa	26-Aug-2008	genomic RNA	subtype: C	1	231	6L,14P,41T,75D,77I,83L,91V,102T,116A,120S,128D,148V,154K,169F,177S,178T,200G,203R,208H,211I,225S
JQ779224	705010534.p77	South Africa	26-Aug-2008	genomic RNA	subtype: C	1	231	6L,14P,41T,75D,83L,91V,108S,116A,120S,128D,148V,154K,169F,177S,178T,200G,203R,208H,211I,225S
JQ779225	705010534.p8	South Africa	26-Aug-2008	genomic RNA	subtype: C	1	231	6L,14P,41T,75D,77I,83L,91V,102T,116A,120S,128D,148V,154K,169F,177S,178T,200G,203R,208H,211I,225S
JQ779148	707010457.p1	Tanzania	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,87P,91V,96L,98D,116A,120A,123A,128D,148V,154K,169F,178T,187D,191I,208G,225S
JQ779149	707010457.p10	Tanzania	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,87P,91V,96L,98D,116A,120A,123A,128D,148V,154K,169F,178T,187D,191I,208G,225S
JQ779150	707010457.p11	Tanzania	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,87P,91V,96L,98D,116A,120A,123A,128D,148V,154K,169F,178T,187D,191I,208G,225S
JQ779151	707010457.p12	Tanzania	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,87P,91V,96L,98D,116A,120A,123A,128D,148V,154K,169F,178T,187D,191I,208G,225S
JQ779152	707010457.p13	Tanzania	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,87P,91V,96L,98D,116A,120A,123A,128D,148V,154K,169F,178T,187D,191I,208G,225S
JQ779153	707010457.p14	Tanzania	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,87P,91V,96L,98D,116A,120A,123A,128D,148V,154K,169F,178T,187D,191I,208G,225S,226Y
JQ779154	707010457.p15	Tanzania	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,87P,91V,96L,98D,116A,120A,123A,128D,148V,154K,169F,178T,187D,191I,208G,225S
JQ779155	707010457.p16	Tanzania	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,87P,91V,96L,98D,116A,120A,123A,128D,148V,154K,169F,178T,187D,191I,208G,225S
JQ779156	707010457.p17	Tanzania	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,87P,91V,96L,98D,116A,120A,123A,128D,148V,154K,169F,178T,187D,191I,208G,225S
JQ779157	707010457.p18	Tanzania	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,87P,91V,96L,98D,116A,120A,123A,128D,148V,154K,169F,178T,187D,191I,208G,225S
JQ779158	707010457.p19	Tanzania	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,87P,91V,96L,98D,116A,120A,123A,128D,148V,154K,169F,178T,187D,191I,208G,225S
JQ779159	707010457.p2	Tanzania	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,87P,91V,96L,98D,116A,120A,123A,128D,148V,154K,169F,178T,187D,191I,208G,215MV,225S
JQ779160	707010457.p20	Tanzania	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,87P,91V,96L,98D,116A,120A,123A,128D,148V,154K,169F,178T,187D,191I,208G,225S
JQ779161	707010457.p21	Tanzania	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,87P,91V,96L,98D,116A,120A,123A,128D,148V,154K,169F,178T,183T,187D,191I,208G,225S
JQ779162	707010457.p22	Tanzania	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,87P,91V,96L,98D,116A,120A,123A,128D,148V,154K,169F,178T,187D,191I,208G,225S
JQ779163	707010457.p23	Tanzania	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,87P,91V,96L,98D,116T,120A,123A,128D,148V,149NS,154K,169F,178T,187D,191I,208G,225S
JQ779164	707010457.p3	Tanzania	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,87P,91V,96L,98D,116A,120A,123A,128D,148V,154K,169F,178T,187D,191I,208G,225S
JQ779165	707010457.p4	Tanzania	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,87P,91V,96L,98D,116A,120A,123A,128D,148V,154K,169F,178T,187D,191I,208G,225S
JQ779166	707010457.p6	Tanzania	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,87P,91V,98D,116A,120A,123A,148V,154K,169F,178T,187D,191I,208G,225S
JQ779167	707010457.p7	Tanzania	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,87P,91V,96L,98D,116A,120A,123A,128D,148V,154K,169F,178T,187D,191I,208G,225S
JQ779168	707010457.p8	Tanzania	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,87P,91V,96L,98D,116A,120A,123A,128D,148V,154K,169F,178T,187D,191I,208G,225S
JQ779169	707010457.p9	Tanzania	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,87P,91V,96L,98D,116A,120A,123A,128D,148V,154K,169F,178T,187D,191I,208G,225S

Genbank References: capsid (p24)

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