Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Hertz (2017)	A study of vaccine-induced immune pressure on breakthrough infections in the Phambili phase 2b HIV-1 vaccine efficacy trial	Vaccine 34 (47), 5792-5801 (2016)	1.73e-151	272	43	Naive	Plasma	SGS	Molecular epidemiology

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Accession	IsolateName	Country	Coll Date	MolType	Note	FirstAA	LastAA	MutList
KT183051	503_00146_A1a	South Africa	25-Feb-2008	genomic RNA	subtype: C	1	231	6L,41T,50H,54S,56M,58A,71D,83L,91V,116A,120S,128D,146C,148V,154K,169F,177S,187D,208G
KT183052	503_00146_A2	South Africa	25-Feb-2008	genomic RNA	subtype: C	1	231	6L,41T,50H,54S,56M,58A,71D,75EG,83L,91V,116A,120S,128D,146C,148V,154K,169F,177S,187D,208G
KT183053	503_00146_D3	South Africa	25-Feb-2008	genomic RNA	subtype: C	1	231	6L,27L,41T,50H,54S,56M,58A,71D,83L,91V,116A,120S,128D,146C,148V,154K,169F,177S,187D,208G
KT183054	503_00146_F6	South Africa	25-Feb-2008	genomic RNA	subtype: C	1	231	6L,41T,50H,54S,56M,58A,71D,83L,91V,116A,120S,128D,146C,148V,154K,169F,177S,187D,208G
KT183055	503_00146_H1	South Africa	25-Feb-2008	genomic RNA	subtype: C	1	231	6L,41T,50H,54S,56M,58A,71D,83L,91V,116A,120S,128D,146C,148V,154K,169F,177S,187D,208G
KT183056	503_00885_10	South Africa	04-Dec-2008	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,36I,41T,71D,83L,96L,112R,116A,124V,128D,148V,154K,169F,178T,180D,187D,203R,208S,210S
KT183057	503_00885_16	South Africa	04-Dec-2008	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,36I,41T,71D,83L,96L,112R,116A,124V,128D,148V,154K,169F,178T,180D,187D,203R,208S,210S
KT183058	503_00885_50_1	South Africa	04-Dec-2008	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,36I,41T,71D,83L,96L,110N,116A,124V,128D,148V,154K,169F,178T,180D,187D,203R,208S,210S
KT183059	503_00885_51	South Africa	04-Dec-2008	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,36I,41T,71D,83L,96L,112R,116A,124V,128D,148V,154K,169F,178T,180D,187D,203R,208S,210S
KT183060	503_00885_52	South Africa	04-Dec-2008	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,36I,41T,71D,83L,96L,112R,116A,124V,128D,148V,154K,169F,178T,180D,187D,203R,208S,210S
KT183061	503_00885_B2	South Africa	04-Dec-2008	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,36I,41T,71D,83L,96L,112R,116A,124V,128D,148V,154K,169F,178T,180D,187D,203R,208S,210S
KT183062	503_00885_G6	South Africa	04-Dec-2008	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,36I,41T,71D,83L,96L,111P,112W,116A,124V,128D,148V,154K,169F,178T,180D,187D,203R,208S,210S
KT183063	503_01009_2	South Africa	27-Aug-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83L,87P,91V,98D,116A,120A,124M,128D,148V,154K,169F,178T,180D,187D,203R,208G
KT183064	503_01009_4	South Africa	27-Aug-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83L,87P,91V,98D,112R,116A,120A,124M,128D,148V,154K,169F,178T,180D,187D,203R,208G
KT183065	503_01009_56	South Africa	27-Aug-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83L,87P,91V,98D,112R,116A,120A,124M,128D,148V,154K,169F,178T,180D,187D,203R,208G
KT183066	503_01009_64	South Africa	27-Aug-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83L,87P,91V,98D,112R,116A,120A,124M,128D,148V,154K,169F,178T,180D,187D,203R,208G
KT183067	503_01009_8	South Africa	27-Aug-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83L,87P,91V,98D,112R,116A,120A,124M,128D,148V,154K,169F,178T,180D,187D,203R,208G
KT183068	503_01244_10	South Africa	28-Jan-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,86A,87Q,96I,116T,120G,124V,148V,154K,169F,178T,187D,203R,208G,225S
KT183069	503_01244_16	South Africa	28-Jan-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,86A,87Q,96I,116T,120G,124V,148V,154K,169F,171V,178T,180D,187D,203R,210S
KT183070	503_01244_21	South Africa	28-Jan-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,86A,87Q,96I,116T,120G,124V,148V,154K,169F,178T,180D,187D,203R,210S
KT183071	503_01244_27	South Africa	28-Jan-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,86A,87Q,96I,116T,120G,124V,148V,154K,169F,178T,180D,187D,203R,210S
KT183072	503_01244_30	South Africa	28-Jan-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,86A,87Q,96I,116T,120G,124V,148V,154K,169F,170R,178T,180D,187D,203R,210S
KT183073	503_01288_10A	South Africa	17-Feb-2009	genomic RNA	subtype: CB	1	231	6L,10H,15L,27I,41T,71D,83L,87Q,91V,96I,110N,116A,120S,148V,154K,169F,178T,187D,203R,204G,208G
KT183074	503_01288_7C	South Africa	17-Feb-2009	genomic RNA	subtype: CB	1	231	6L,10H,15L,27I,41T,71D,83L,87Q,91V,96I,110N,116A,120S,148V,154K,169F,178T,187D,191I,203R,204G,208G
KT183075	503_01288_A1	South Africa	17-Feb-2009	genomic RNA	subtype: CB	1	231	6L,10H,15L,27I,41T,71D,83L,87Q,91V,96I,110N,116A,120S,148V,154K,169F,178T,187D,203R,204G,208G
KT183076	503_01288_D2	South Africa	17-Feb-2009	genomic RNA	subtype: CB	1	231	6L,10H,15L,27I,41T,71D,83L,87Q,91V,96I,110N,116A,120S,148V,154K,169F,178T,187D,203R,204G,208G
KT183077	503_01288_T4	South Africa	17-Feb-2009	genomic RNA	subtype: CB	1	231	6L,10H,15L,27I,41T,71D,83L,87Q,91V,96I,110N,116A,120S,148V,154K,169F,178T,187D,203R,204G,208G
KT183078	503_01918_A10	South Africa	09-Sep-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,91V,116A,120G,124V,128D,148V,154K,169F,177S,178T,187D,203R,208G,225S
KT183079	503_01918_B6	South Africa	09-Sep-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,91V,116A,120G,124V,128D,148V,154K,169F,177S,178T,187D,203R,208G,225S
KT183080	503_01918_E12	South Africa	09-Sep-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,91V,116A,120G,124V,128D,148V,154K,169F,177S,178T,187D,203R,208G,225S
KT183081	503_01918_E6	South Africa	09-Sep-2008	genomic RNA	subtype: C	1	231	6L,27I,36X,41T,71D,83M,91V,116A,120G,124V,128D,148V,154K,169F,177S,178T,187D,203R,208G,225S
KT183082	503_01918_G6	South Africa	09-Sep-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,91V,116A,120G,124V,128D,148V,154K,169F,177S,178T,187D,203R,208G,225S
KT183083	503_01918_H10	South Africa	09-Sep-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,42AST,72P,73S,83M,91V,116A,120G,124V,128D,148V,154K,169F,177S,178T,187D,203R,208G,225S
KT183084	503_02051_1	South Africa	09-Oct-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83L,87Q,91V,110N,116A,120G,128D,136I,148V,169F,178T,180D,187D,203R,208G,225S
KT183085	503_02051_10	South Africa	09-Oct-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83L,87Q,91V,110N,116A,120G,128D,136I,148V,169F,178T,180D,187D,203R,208G,225S
KT183086	503_02051_53	South Africa	09-Oct-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83L,87Q,91V,110N,116A,120G,128D,136I,148V,169F,178T,180D,187D,203R,208G,225S
KT183087	503_02051_66	South Africa	09-Oct-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83L,87Q,91V,110N,116A,120G,128D,136I,148V,169F,178T,180D,187D,203R,208G,225S
KT183088	503_02051_8	South Africa	09-Oct-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83L,87Q,91V,110N,116A,120G,128D,136I,148V,169F,178T,180D,187D,203R,208G,225S
KT183090	503_02182_B5	South Africa	05-Sep-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83I,94N,96I,116T,120S,148V,154K,169F,178T,180D,187D,203R,208G,210S
KT183091	503_02182_B6	South Africa	05-Sep-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83I,94N,96I,116T,120S,148V,154K,169F,178T,180D,187D,203R,208G,210S
KT183092	503_02182_D5	South Africa	05-Sep-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83I,94N,96I,116T,120S,148V,154K,169F,178T,180D,187D,203R,208G,210S
KT183093	503_02182_E6	South Africa	05-Sep-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83I,94N,96I,116T,120S,148V,154K,169F,178T,180D,187D,203R,208G,210S
KT183094	503_02660_1	South Africa	11-Oct-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83L,91V,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
KT183095	503_02660_2	South Africa	11-Oct-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83L,91V,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
KT183096	503_02660_3	South Africa	11-Oct-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83L,91V,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
KT183097	503_02660_4	South Africa	11-Oct-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83L,91V,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
KT183098	503_02660_5	South Africa	11-Oct-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83L,91V,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
KT183099	503_02660_6	South Africa	11-Oct-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83L,91V,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
KT183100	503_02660_7	South Africa	11-Oct-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83L,91V,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
KT183101	503_02660_8	South Africa	11-Oct-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,61E,71D,83L,91V,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
KT183102	503_02660_9	South Africa	11-Oct-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83L,91V,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
KT183103	503_02854_C1	South Africa	25-Jul-2007	genomic RNA	subtype: C	1	231	6S,14T,15L,27I,31N,41T,54S,58V,59I,71D,83L,110N,112T,116A,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,211I,225T,230I
KT183105	503_02854_F3	South Africa	25-Jul-2007	genomic RNA	subtype: C	1	231	6S,14T,15L,27I,31N,41T,54S,58V,59I,71D,83L,110N,112T,116A,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,211I,225T,230I
KT183106	503_02854_G4	South Africa	25-Jul-2007	genomic RNA	subtype: C	1	231	6S,14T,15L,27I,31N,41T,54G,58V,59I,71D,83L,110N,112T,116A,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,211I,225T,230I
KT183107	503_02854_H3	South Africa	25-Jul-2007	genomic RNA	subtype: C	1	231	6S,14T,15L,27I,31N,41T,54S,58V,59I,71D,83L,110N,112T,116A,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,211I,225T,230I
KT183108	503_02869_LH11	South Africa	05-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,124V,128D,148V,169F,178T,180D,203R,208G
KT183109	503_02869_LH2	South Africa	05-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,124V,128D,148V,169F,178T,180D,203R,208G
KT183110	503_02869_LH3	South Africa	05-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,124V,128D,148V,169F,178T,180D,203R,208G
KT183111	503_02869_LH4	South Africa	05-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,124V,128D,148V,169F,178T,180D,203R,208G
KT183112	503_02869_LH5	South Africa	05-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,124V,128D,148V,169F,178T,180DE,203R,208G
KT183113	503_02869_LH6	South Africa	05-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,124V,128D,148V,169F,178T,180D,203R,208G
KT183117	503_03011_12	South Africa	06-Nov-2007	genomic RNA	subtype: CA	1	231	6L,14T,15L,27I,45D,54S,58A,71D,83L,91V,96L,116A,124V,128D,148V,154K,169F,178T,180D,187D,203R,207Q,208G,225S
KT183118	503_03011_29	South Africa	06-Nov-2007	genomic RNA	subtype: CA	1	231	6L,14T,15L,27I,45D,54S,58A,71D,83L,91V,96L,116A,124V,128D,148V,154K,169F,178T,180D,187D,203R,207Q,208G,225S
KT183119	503_03011_53	South Africa	06-Nov-2007	genomic RNA	subtype: CA	1	231	6L,14T,15L,27I,45D,54S,58A,71D,83L,91V,96L,116A,124V,128D,148V,154K,169F,178T,180D,187D,203R,207Q,208G,225S
KT183120	503_03011_55	South Africa	06-Nov-2007	genomic RNA	subtype: CA	1	231	6L,14T,15L,27I,45D,54S,58A,71D,83L,91V,96L,116A,124V,128D,148V,154K,169F,178T,180D,187D,203R,207Q,208G,225S
KT183121	503_03011_72	South Africa	06-Nov-2007	genomic RNA	subtype: CA	1	231	6L,14T,15L,27I,45D,54S,58A,71D,83L,91V,96L,116A,124V,128D,148V,154K,169F,178T,180D,187D,203R,207Q,208G,225S
KT183122	503_03011_78	South Africa	06-Nov-2007	genomic RNA	subtype: CA	1	231	6L,14T,15L,27I,45D,54S,58A,71D,83L,91V,96L,116A,124V,128D,148V,154K,169F,178T,180D,187D,203R,207Q,208G,225S
KT183123	503_03257_A7	South Africa	30-Jul-2008	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,91V,96L,116A,120T,124V,128D,148V,169F,178T,180D,187D,203R,208G,225S
KT183124	503_03257_D1	South Africa	30-Jul-2008	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,91V,96L,116A,120T,124V,128D,148V,169F,178T,180D,187D,203R,208G,225S
KT183125	503_03257_D1b	South Africa	30-Jul-2008	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,91V,96L,116A,120T,124V,128D,148V,169F,178T,180D,187D,203R,208G,225S
KT183126	503_03257_D2	South Africa	30-Jul-2008	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,91V,96L,116A,120T,124V,128D,148V,169F,178T,180D,187D,203R,208G,225S
KT183127	503_03257_D3	South Africa	30-Jul-2008	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,79EG,83L,91V,96L,116A,120T,124V,128D,148V,169F,178T,180D,187D,203R,208G,225S
KT183128	503_03576_12	South Africa	28-May-2008	genomic RNA	subtype: C	1	231	6A,11I,17A,50G,71D,83L,116A,120G,128D,148V,154K,169F,178T,180D,187D,208G,210S,225S
KT183129	503_03576_17	South Africa	28-May-2008	genomic RNA	subtype: C	1	231	6A,11I,17A,50G,71D,83L,116A,120G,128D,148V,154K,169F,178T,180D,187D,208G,210S,225S
KT183130	503_03576_18	South Africa	28-May-2008	genomic RNA	subtype: C	1	231	6A,11I,17A,50G,71D,83L,116A,120G,128D,148V,154K,169F,178T,180D,187D,208G,210S,225S
KT183131	503_03576_37	South Africa	28-May-2008	genomic RNA	subtype: C	1	231	6A,11I,17A,50G,71D,83L,97GR,116A,120G,128D,148V,154K,169F,178T,180D,187D,208G,210S,225S
KT183132	503_03576_74	South Africa	28-May-2008	genomic RNA	subtype: C	1	231	6A,11I,17A,50G,71D,83L,116A,120G,128D,148V,154K,169F,178T,180D,187D,208G,210S,225S
KT183133	503_03576_74_2	South Africa	28-May-2008	genomic RNA	subtype: C	1	231	6A,11I,17A,50G,71D,83L,116A,120G,128D,148V,154K,169F,178T,180D,187D,208G,210S,225S
KT183134	503_03576_78	South Africa	28-May-2008	genomic RNA	subtype: C	1	231	6A,11I,17A,50G,71D,83L,116A,120G,128D,148V,154K,169F,178T,180D,187D,208G,210S,225S
KT183135	503_04394_C2	South Africa	04-Aug-2008	genomic RNA	subtype: C	1	231	6A,13M,14P,15L,16T,27I,31N,41T,54S,71D,83L,86Q,91V,110N,116A,120G,128D,148V,154K,169F,178T,187D,203R,208G
KT183136	503_04394_D3	South Africa	04-Aug-2008	genomic RNA	subtype: C	1	231	6A,13M,14P,15L,16T,27I,31N,41T,54S,71D,83L,86Q,91V,110N,116A,120G,128D,148V,154K,169F,178T,187D,203R,208G
KT183137	503_04394_F3	South Africa	04-Aug-2008	genomic RNA	subtype: C	1	231	6A,13M,14P,15L,16T,27I,31N,41T,54S,71D,83L,86Q,91V,112H,116A,120G,128D,148V,154K,169F,178T,187D,203R,208G
KT183138	503_04394_G3	South Africa	04-Aug-2008	genomic RNA	subtype: C	1	231	6A,13M,14P,15L,16T,27I,31N,41T,54S,71D,83L,86Q,91V,116A,120G,128D,148V,154K,169F,178T,187D,203R,208G
KT183139	503_04394_H1	South Africa	04-Aug-2008	genomic RNA	subtype: C	1	231	6A,13M,14P,15L,16T,27I,31N,41T,54S,71D,83L,86Q,91V,110N,116A,120G,128D,148V,154K,169F,178T,187D,203R,208G
KT183140	503_05130_1	South Africa	05-Jan-2009	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,92P,116A,120S,124V,128D,148V,169F,171V,178T,180D,191I,207Q,208G,210S
KT183141	503_05130_2	South Africa	05-Jan-2009	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,92P,116A,120S,124V,128D,148V,169F,171V,178T,180D,191I,207Q,208G,210S
KT183142	503_05130_5	South Africa	05-Jan-2009	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,92P,116A,120S,124V,128D,148V,169F,171V,178T,180D,191I,207Q,208G,210S
KT183143	503_05130_6	South Africa	05-Jan-2009	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,92P,116A,120S,124V,128D,148V,169F,171V,178T,180D,191I,207Q,208G,210S
KT183144	503_05130_7	South Africa	05-Jan-2009	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,92P,116A,120S,124V,128D,148V,169F,171V,178T,180D,191I,207Q,208G,210S
KT183145	503_05649_A5a	South Africa	03-Dec-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,112A,116A,120A,124V,148V,169F,178T,180D,187D,203R,208G
KT183146	503_05649_D6B	South Africa	03-Dec-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,112V,116A,120A,124V,148V,169F,178T,180D,187D,203R,208G
KT183147	503_05649_E7	South Africa	03-Dec-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,112A,116A,120S,124V,148V,169F,178T,180D,187D,203R,208G
KT183148	503_05649_G6	South Africa	03-Dec-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,112V,116A,120A,124V,148V,169F,178T,180D,187D,203R,208G
KT183149	503_05649_H8	South Africa	03-Dec-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,112V,116A,120A,124V,148V,169F,178T,180D,187D,203R,208G
KT183150	503_05780_1	South Africa	25-Aug-2008	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,91V,92AV,96L,116A,124V,148V,154K,169F,171V,178T,180D,187D,200I,204G,207H,208G,225S
KT183151	503_05780_2	South Africa	25-Aug-2008	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,91V,96L,116A,124V,148V,154K,169F,171V,178T,180D,187D,200I,204G,207H,208G,225S
KT183152	503_05780_3	South Africa	25-Aug-2008	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,91V,96L,102G,116A,124V,148V,154K,169F,171V,178T,180D,187D,200I,204G,207H,208G,225S
KT183153	503_05780_4	South Africa	25-Aug-2008	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,91V,96L,116A,124V,148V,154K,169F,171V,178T,180D,187D,200I,204G,207H,208G,225S
KT183154	503_05780_5	South Africa	25-Aug-2008	genomic RNA	subtype: C	1	231	6V,27I,41T,71D,91V,96L,116A,124V,148V,154K,169F,171V,178T,180D,187D,200I,204G,207H,208G,225S
KT183155	503_06150_1	South Africa	28-Jan-2008	genomic RNA	subtype: C	1	231	6L,14N,27I,41T,71D,83L,116A,120S,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G
KT183156	503_06150_2	South Africa	28-Jan-2008	genomic RNA	subtype: C	1	231	6L,14N,27I,41T,71D,83L,116A,120S,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G
KT183157	503_06150_3	South Africa	28-Jan-2008	genomic RNA	subtype: C	1	231	6L,14N,27I,41T,71D,83L,116A,120S,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G
KT183158	503_06150_4	South Africa	28-Jan-2008	genomic RNA	subtype: C	1	231	6L,14N,27I,41T,71D,83L,116A,120S,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G
KT183159	503_06150_5	South Africa	28-Jan-2008	genomic RNA	subtype: C	1	231	6L,14N,27I,41T,71D,83L,111LP,116A,120S,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G
KT183160	503_06150_B3	South Africa	28-Jan-2008	genomic RNA	subtype: C	1	231	6L,14N,27I,41T,71D,83L,116A,120S,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G
KT183161	503_06150_D3	South Africa	28-Jan-2008	genomic RNA	subtype: C	1	231	6L,14N,27I,41T,71D,83L,116A,120S,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G
KT183163	503_06150_H3	South Africa	28-Jan-2008	genomic RNA	subtype: C	1	231	6L,14N,27I,41T,71D,83L,116A,120S,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G
KT183164	503_06150_T11	South Africa	28-Jan-2008	genomic RNA	subtype: C	1	231	6L,14N,27I,41T,71D,83L,116A,120S,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G
KT183165	503_06150_T2	South Africa	28-Jan-2008	genomic RNA	subtype: C	1	231	6L,14N,27I,41T,71D,83L,116A,120S,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G
KT183166	503_06150_T28	South Africa	28-Jan-2008	genomic RNA	subtype: C	1	231	6L,14N,27I,41T,71D,83L,116A,120S,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G
KT183167	503_06310_25	South Africa	03-Jun-2008	genomic RNA	subtype: C	1	231	6A,41T,83L,115V,116A,120G,128D,148V,154K,169F,171I,178T,180D,203R,210S,229K
KT183168	503_06310_27	South Africa	03-Jun-2008	genomic RNA	subtype: C	1	231	6A,41T,83L,115V,116A,120G,128D,148V,154K,169F,171I,178T,180D,203R,210S,229K
KT183170	503_06310_68	South Africa	03-Jun-2008	genomic RNA	subtype: C	1	231	6A,41T,83L,115V,116A,120G,128D,148V,154K,169F,171I,178T,180D,203R,210S,229K
KT183171	503_06310_76	South Africa	03-Jun-2008	genomic RNA	subtype: C	1	231	6A,41T,83L,115V,116A,120G,128D,148V,154K,169F,171I,178T,180D,203R,210S,229K
KT183172	503_06485_10_2	South Africa	24-Jun-2008	genomic RNA	subtype: C	1	231	2V,6A,27I,41T,71D,83L,116T,120G,148V,154K,169F,178T,180D,187D,203R,208G
KT183173	503_06485_19	South Africa	24-Jun-2008	genomic RNA	subtype: C	1	231	2V,6A,27I,41T,71D,83L,116T,120G,148V,154K,169F,178T,180D,187D,203R,208G
KT183174	503_06485_38	South Africa	24-Jun-2008	genomic RNA	subtype: C	1	231	2V,6A,27I,41T,71D,83L,116T,120G,148V,154K,169F,178T,180D,187D,203R,208G
KT183175	503_06485_5	South Africa	24-Jun-2008	genomic RNA	subtype: C	1	231	2V,6A,27I,41T,71D,83L,116T,120G,148V,154K,169F,178T,180D,187D,203R,208G
KT183176	503_06485_8	South Africa	24-Jun-2008	genomic RNA	subtype: C	1	231	2V,6A,27I,41T,71D,83L,116T,120G,148V,154K,169F,178T,180D,187D,203R,208G
KT183177	503_06485_9	South Africa	24-Jun-2008	genomic RNA	subtype: C	1	231	2V,6A,27I,41T,71D,83L,116T,120G,148V,154K,169F,178T,180D,187D,203R,208G
KT183178	503_06877_19	South Africa	11-Dec-2008	genomic RNA	subtype: C	1	231	6A,14P,27I,33N,36I,41T,71D,83L,91V,116A,120G,128D,135V,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KT183179	503_06877_A1	South Africa	11-Dec-2008	genomic RNA	subtype: C	1	231	6A,14P,27I,33N,36I,41T,71D,83L,91V,116A,120G,128D,135V,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KT183180	503_06877_C1	South Africa	11-Dec-2008	genomic RNA	subtype: C	1	231	6A,14P,27I,33N,36I,41T,71D,83L,91V,116A,120G,128D,135V,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KT183181	503_06877_C2	South Africa	11-Dec-2008	genomic RNA	subtype: C	1	231	6A,14P,27I,33N,36I,41T,71D,83L,116A,120G,128D,135V,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KT183182	503_06877_D2	South Africa	11-Dec-2008	genomic RNA	subtype: C	1	231	6A,14P,27I,33N,36I,41T,71D,83L,91V,116A,120G,128D,135V,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KT183183	503_06877_E1	South Africa	11-Dec-2008	genomic RNA	subtype: C	1	231	6A,14P,15V,71D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KT183184	503_06877_F1	South Africa	11-Dec-2008	genomic RNA	subtype: C	1	231	6A,14P,15V,71D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KT183185	503_06877_G2	South Africa	11-Dec-2008	genomic RNA	subtype: C	1	231	6A,14P,27I,33N,36I,41T,71D,83L,116A,120G,128D,135V,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KT183186	503_06877_G3	South Africa	11-Dec-2008	genomic RNA	subtype: C	1	231	6A,14P,15V,71D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KT183187	503_06877_H1	South Africa	11-Dec-2008	genomic RNA	subtype: C	1	231	6A,14P,27I,33N,36I,41T,71D,83L,91V,116A,120G,128D,135V,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KT183188	503_07001_A1	South Africa	01-Jul-2008	genomic RNA	subtype: C	1	231	6L,14N,27I,41T,50S,71D,83L,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,204G,207Q,208G
KT183189	503_07001_B1	South Africa	01-Jul-2008	genomic RNA	subtype: C	1	231	6L,14N,27I,41T,50S,71D,83L,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,204G,207Q,208G
KT183190	503_07001_B2	South Africa	01-Jul-2008	genomic RNA	subtype: C	1	231	6L,14N,27I,41T,50S,71D,83L,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,204G,207Q,208G
KT183191	503_07001_B5	South Africa	01-Jul-2008	genomic RNA	subtype: C	1	231	6L,14N,27I,41T,50S,71D,83L,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,204G,207Q,208G
KT183192	503_07001_C1	South Africa	01-Jul-2008	genomic RNA	subtype: C	1	231	6L,14N,27I,41T,50S,71D,83L,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,204G,207Q,208G
KT183193	503_07001_D1	South Africa	01-Jul-2008	genomic RNA	subtype: C	1	231	6L,14N,27I,41T,50S,71D,83L,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,204G,207Q,208G
KT183194	503_07001_E1	South Africa	01-Jul-2008	genomic RNA	subtype: C	1	231	6L,14N,27I,41T,50S,71D,83L,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,204G,207Q,208G
KT183195	503_07001_F1	South Africa	01-Jul-2008	genomic RNA	subtype: C	1	231	6L,14N,27I,41T,50S,71D,83L,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,204G,207Q,208G
KT183196	503_07352_C1	South Africa	19-Nov-2007	genomic RNA	subtype: C	1	231	6A,15L,41T,71D,83L,110N,116A,128D,136I,148V,169F,178T,180D,187D,203R,208G,210S
KT183197	503_07352_C3b	South Africa	19-Nov-2007	genomic RNA	subtype: C	1	231	6A,15L,41T,71D,83L,110N,116A,128D,136I,148V,169F,178T,180D,187D,203R,208G,210S
KT183198	503_07352_D1	South Africa	19-Nov-2007	genomic RNA	subtype: C	1	231	6A,15L,41T,71D,83L,110N,116A,128D,136I,148V,169F,178T,180D,187D,203R,208G,210S
KT183199	503_07352_E2	South Africa	19-Nov-2007	genomic RNA	subtype: C	1	231	6A,15L,41T,71D,83L,110N,116A,128D,136I,148V,169F,178T,180D,187D,203R,208G,210S
KT183200	503_07352_F1	South Africa	19-Nov-2007	genomic RNA	subtype: C	1	231	6A,15L,41T,71D,83L,110N,116A,128D,136I,148V,169F,178T,180D,187D,203R,208G,210S
KT183201	503_07464_A5	South Africa	02-Jul-2008	genomic RNA	subtype: C	1	231	6H,27I,41T,70E,71D,83L,97G,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
KT183202	503_07464_A6	South Africa	02-Jul-2008	genomic RNA	subtype: C	1	231	6H,27I,41T,71D,83L,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
KT183203	503_07464_A8	South Africa	02-Jul-2008	genomic RNA	subtype: C	1	231	6H,27I,41T,71D,83L,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
KT183204	503_07464_C10	South Africa	02-Jul-2008	genomic RNA	subtype: C	1	231	6H,27I,41T,71D,83L,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
KT183205	503_07464_D8	South Africa	02-Jul-2008	genomic RNA	subtype: C	1	231	6H,27I,41T,71D,83L,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
KT183206	503_07464_E5	South Africa	02-Jul-2008	genomic RNA	subtype: C	1	231	6H,27I,41T,71D,83L,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
KT183207	503_07464_G3	South Africa	02-Jul-2008	genomic RNA	subtype: C	1	231	6H,27I,41T,71D,83L,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
KT183208	503_07518_A12	South Africa	14-Dec-2007	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,75D,83L,86A,91N,92P,93A,116A,120A,128D,148V,169F,178T,187D,199R,208G,210N,225S
KT183209	503_07518_A7	South Africa	14-Dec-2007	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,75D,83L,86A,91N,92P,93A,116A,120A,128D,148V,169F,178T,187D,199R,208G,210N,225S
KT183210	503_07518_D11	South Africa	14-Dec-2007	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,75D,83L,86A,91N,92P,93A,116A,120A,128D,148V,169F,178T,187D,199R,208G,210N,225S
KT183211	503_07518_E9	South Africa	14-Dec-2007	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,75D,83L,86A,91N,92P,93A,116A,120A,128D,148V,169F,178T,187D,199R,208G,210N,225S
KT183212	503_07518_H11	South Africa	14-Dec-2007	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,75D,83L,86A,91N,92P,93A,116A,120A,128D,148V,169F,178T,187D,199R,208G,210N,225S
KT183213	503_07711_22	South Africa	05-Oct-2007	genomic RNA	subtype: C	1	231	6H,41T,68I,71D,96I,116T,123S,148V,169F,178T,180D,187D,200V,204G,208G,210S
KT183214	503_07711_B6	South Africa	05-Oct-2007	genomic RNA	subtype: C	1	231	6H,41T,68I,71D,96I,116T,123S,148V,169F,178T,180D,187D,200V,204G,208G,210S
KT183215	503_07711_C9	South Africa	05-Oct-2007	genomic RNA	subtype: C	1	231	6H,41T,68I,71D,96I,116T,148V,169F,178T,180D,187D,200V,204G,208G,210S
KT183216	503_07711_D6	South Africa	05-Oct-2007	genomic RNA	subtype: C	1	231	6H,41T,68I,71D,96I,116T,148V,169F,178T,180D,187D,200V,204G,208G,210S
KT183217	503_07711_T13	South Africa	05-Oct-2007	genomic RNA	subtype: C	1	231	6H,41T,68I,71D,96I,116T,148V,169F,178T,180D,187D,200V,204G,208G,210S
KT183218	503_08252_19	South Africa	04-Nov-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,87Q,91V,96I,98D,116A,120S,124V,148V,154K,169F,178T,183G,187D,203R,208G,210S,225S
KT183219	503_08252_21	South Africa	04-Nov-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,87Q,91V,96I,98D,116A,120S,124V,148I,154K,169F,178T,183G,187D,203R,208G,210S,225S
KT183220	503_08252_24	South Africa	04-Nov-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,87Q,91V,96I,98D,116A,120S,124V,148V,154K,169F,178T,183G,187D,203R,208G,210S,225S
KT183221	503_08252_26	South Africa	04-Nov-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,87Q,91V,96I,98D,116A,119IT,120S,124V,148V,154K,159EG,169F,178T,183G,187D,203R,208G,210S,225S
KT183222	503_08252_28	South Africa	04-Nov-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,87Q,91V,96I,98D,116A,120S,124V,148V,154K,169F,178T,183G,187D,203R,208G,210S,225S
KT183223	503_08252_50	South Africa	04-Nov-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,87Q,91V,96I,98D,116A,120S,124V,148V,154K,169F,178T,183G,187D,203R,208G,210S,225S
KT183224	503_08252_51	South Africa	04-Nov-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,87Q,91V,96I,98D,116A,120S,124V,148V,154K,169F,178T,183G,187D,203R,208G,210S,225S
KT183225	503_08252_56	South Africa	04-Nov-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,87Q,91V,96I,98D,116A,120S,124V,148V,154K,169F,178T,183G,187D,203R,208G,210S,225S
KT183226	503_08252_7	South Africa	04-Nov-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,87Q,91V,96I,98D,116A,120S,124V,148V,154K,169F,178T,183G,187D,203R,208G,210S,225S
KT183228	503_09003_4	South Africa	25-Oct-2007	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,41T,50S,71D,83L,116A,120S,124V,128D,148V,169F,178T,180D,187D,203R,208G
KT183229	503_09003_5	South Africa	25-Oct-2007	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,41T,50S,71D,83L,116A,120S,124V,128D,148V,169F,178T,180D,187D,203R,208G
KT183230	503_09003_8	South Africa	25-Oct-2007	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,41T,50S,71D,83L,116A,120S,124V,128D,148V,169F,178T,180D,187D,203R,208G
KT183231	503_09003_9	South Africa	25-Oct-2007	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,41T,50S,71D,83L,116A,120S,124V,128D,148V,169F,178T,180D,187D,203R,208G
KT183232	503_09003_A11	South Africa	25-Oct-2007	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,41T,50S,71D,83L,116A,120S,124V,128D,148V,169F,178T,180D,187D,203R,208G
KT183233	503_09003_A2	South Africa	25-Oct-2007	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,41T,50S,71D,83L,116A,120S,124V,128D,148V,169F,178T,180D,187D,203R,208G
KT183234	503_09003_C3	South Africa	25-Oct-2007	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,41T,50S,71D,83L,116A,120S,124V,128D,148V,169F,178T,180D,187D,203R,208G
KT183235	503_09003_D1	South Africa	25-Oct-2007	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,41T,50S,71D,83L,116A,120S,124V,128D,148V,169F,178T,180D,187D,203R,208G
KT183236	503_09003_E1	South Africa	25-Oct-2007	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,41T,50S,71D,83L,116A,120S,124V,128D,148V,169F,178T,180D,187D,203R,208G
KT183237	503_09003_H2	South Africa	25-Oct-2007	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,41T,50S,71D,83L,116A,120S,124V,128D,148V,169F,178T,180D,187D,203R,208G
KT183238	503_09003_H3	South Africa	25-Oct-2007	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,41T,50S,71D,83L,116A,120S,124V,128D,148V,169F,178T,180D,187D,203R,208G
KT183239	503_09289_10b	South Africa	05-Sep-2008	genomic RNA	subtype: C	1	231	6L,14N,15M,27I,41T,71D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,190M,191I,200I,203R,204G,208G
KT183240	503_09289_T16	South Africa	05-Sep-2008	genomic RNA	subtype: C	1	231	6L,14N,15M,27I,41T,71D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,190M,191I,200I,203R,204G,208G
KT183241	503_09289_T26	South Africa	05-Sep-2008	genomic RNA	subtype: C	1	231	6L,14N,15M,27I,41T,71D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,190M,191I,200I,203R,204G,208G
KT183242	503_09289_T3b	South Africa	05-Sep-2008	genomic RNA	subtype: C	1	231	6L,14N,15M,27I,41T,71D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,190M,191I,200I,203R,204G,208G
KT183243	503_09289_T4	South Africa	05-Sep-2008	genomic RNA	subtype: C	1	231	6L,14N,15M,27I,41T,71D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,190M,191I,200I,203R,204G,208G
KT183244	503_09289_T5b	South Africa	05-Sep-2008	genomic RNA	subtype: C	1	231	6L,14N,15M,27I,41T,71D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,190M,191I,200I,203R,204G,208G
KT183245	503_10071_D2B	South Africa	08-Jul-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,75D,83I,116A,120S,124V,148V,169F,178T,187D,203R,204G,208G
KT183246	503_10071_D4	South Africa	08-Jul-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,75D,83I,116A,120S,124V,148V,169F,178T,187D,203R,204G,208G
KT183248	503_10071_G4	South Africa	08-Jul-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,75D,83I,116A,120S,124V,148V,169F,178T,187D,203R,204G,208G
KT183249	503_10071_H6	South Africa	08-Jul-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,75D,83I,116A,120S,124V,148V,169F,178T,187D,203R,204G,208G
KT183250	503_10230_16	South Africa	04-Nov-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,124V,148V,154K,169F,178T,180D,203R,208G
KT183251	503_10230_36	South Africa	04-Nov-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,78AV,83L,91V,116A,124V,148V,154K,169F,178T,180D,203R,208G
KT183253	503_10430_2	South Africa	27-Jul-2007	genomic RNA	subtype: C	1	231	6A,13T,14P,16T,27I,31N,41T,71D,83L,116A,120S,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KT183254	503_10430_3	South Africa	27-Jul-2007	genomic RNA	subtype: C	1	231	6A,13T,14P,16T,27I,31N,41T,71D,83L,116A,120S,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KT183255	503_10430_4	South Africa	27-Jul-2007	genomic RNA	subtype: C	1	231	6A,13T,14P,16T,27I,31N,41T,71D,83L,116A,120S,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KT183256	503_10430_5	South Africa	27-Jul-2007	genomic RNA	subtype: C	1	231	6A,13T,14P,16T,27I,31N,41T,71D,83L,116A,120S,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KT183257	503_10430_6	South Africa	27-Jul-2007	genomic RNA	subtype: C	1	231	6A,13T,14P,16T,27I,31N,41T,71D,83L,116A,120S,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KT183258	503_11070_A10	South Africa	01-Jul-2008	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83M,87Q,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KT183259	503_11070_B7	South Africa	01-Jul-2008	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83M,87Q,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KT183260	503_11070_C7	South Africa	01-Jul-2008	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83M,87Q,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KT183261	503_11070_C8	South Africa	01-Jul-2008	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83M,87Q,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KT183262	503_11070_C8a	South Africa	01-Jul-2008	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83M,87Q,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KT183263	503_11070_D7	South Africa	01-Jul-2008	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83M,87Q,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KT183265	503_11204_39	South Africa	11-Dec-2007	genomic RNA	subtype: C	1	231	6V,14P,15L,31G,33N,41T,71D,83I,91A,96I,116A,120S,148V,169F,178T,180D,187D,203R,207S,208G
KT183266	503_11204_41	South Africa	11-Dec-2007	genomic RNA	subtype: C	1	231	6V,14P,15L,31G,33N,41T,71D,83I,91A,96I,116A,120S,148V,169F,178T,180D,187D,203R,207S,208G
KT183267	503_11204_49	South Africa	11-Dec-2007	genomic RNA	subtype: C	1	231	6V,14P,15L,31G,33N,41T,71D,83I,91A,96I,116A,120S,148V,169F,178T,180D,187D,203R,207S,208G
KT183268	503_11204_50	South Africa	11-Dec-2007	genomic RNA	subtype: C	1	231	6V,14P,15L,31G,33N,41T,71D,83I,91A,96I,116A,120S,148V,169F,178T,180D,187D,203R,207S,208G
KT183269	503_11204_58	South Africa	11-Dec-2007	genomic RNA	subtype: C	1	231	6V,14P,15L,31G,33N,41T,71D,83I,91A,96I,116A,120S,148V,169F,178T,180D,187D,203R,207S,208G
KT183270	503_11204_T9	South Africa	11-Dec-2007	genomic RNA	subtype: C	1	231	6V,14P,15L,31G,33N,41T,71D,83I,91A,96I,116A,120S,148V,169F,178T,180D,187D,203R,207S,208G
KT183271	503_11441_B1	South Africa	21-May-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91N,116A,120S,128D,148V,169F,171V,187D,191I,200N,207S,208G,225S
KT183272	503_11441_B8	South Africa	21-May-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91N,116A,120S,128D,148V,169F,171V,187D,191I,200N,207S,208G,225S
KT183273	503_11441_G1	South Africa	21-May-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91N,116A,120S,128D,148V,169F,171V,187D,191I,200N,207S,208G,225S
KT183274	503_11474_32	South Africa	02-Jul-2008	genomic RNA	subtype: C	1	231	6M,15L,27I,41T,50G,59I,71D,83L,87Q,91V,116A,120G,124V,128D,148V,169F,178T,187D,199R,207S,208G,210S,225S
KT183275	503_11474_67	South Africa	02-Jul-2008	genomic RNA	subtype: C	1	231	15L,27I,41T,50G,59I,71D,83L,87Q,91V,116A,120G,124V,128D,148V,169F,178T,187D,199R,207S,208G,210S,225S
KT183276	503_11474_69	South Africa	02-Jul-2008	genomic RNA	subtype: C	1	231	15L,27I,41T,50G,59I,71D,83L,87Q,91V,116A,120G,124V,128D,148V,169F,178T,187D,199R,207S,208G,210S,225S
KT183277	503_11474_75	South Africa	02-Jul-2008	genomic RNA	subtype: C	1	231	15L,27I,41T,50G,59I,71D,83L,87Q,91V,116A,120G,124V,128D,148V,169F,178T,187D,199R,207S,208G,210S,225S
KT183278	503_11474_89	South Africa	02-Jul-2008	genomic RNA	subtype: C	1	231	6M,15L,27I,41T,50G,59I,71D,83L,87Q,91V,116A,120G,124V,128D,148V,169F,178T,187D,199R,207S,208G,210S,225S
KT183279	503_13503_A5	South Africa	19-Oct-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,96I,116T,124V,148V,169F,178T,180D,203R,208G
KT183280	503_13503_A6	South Africa	19-Oct-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,96I,116T,124V,148V,169F,178T,180D,203R,208G
KT183281	503_13503_B6	South Africa	19-Oct-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,96I,116T,124V,148V,169F,178T,180D,203R,208G
KT183282	503_13503_C5	South Africa	19-Oct-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,96I,116T,124V,148V,169F,178T,180D,203R,208G
KT183283	503_13503_C6	South Africa	19-Oct-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,96I,116T,124V,148V,169F,178T,180D,203R,208G
KT183284	503_13503_D5	South Africa	19-Oct-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,96I,116T,124V,148V,169F,178T,180D,203R,208G
KT183285	503_13503_E6	South Africa	19-Oct-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,96I,116T,124V,148V,169F,178T,180D,203R,208G
KT183286	503_13503_F5	South Africa	19-Oct-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,96I,116T,124V,148V,169F,178T,180D,203R,208G
KT183287	503_13503_G4	South Africa	19-Oct-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,96I,116T,124V,148V,169F,178T,180D,203R,208G
KT183288	503_13503_H4	South Africa	19-Oct-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,96I,116T,124V,148V,169F,178T,180D,203R,208G
KT183289	503_13580_04	South Africa	21-Jan-2009	genomic RNA	subtype: C	1	231	6H,27I,41T,71D,116A,120G,148V,154K,169F,171C,178T,183G,187D,203R,204G,207Q,208G,210S
KT183290	503_13580_08	South Africa	21-Jan-2009	genomic RNA	subtype: C	1	231	6H,27I,41T,71D,116A,120G,148V,154K,169F,171C,178T,183G,187D,203R,204G,207Q,208G,210S
KT183291	503_13580_1	South Africa	21-Jan-2009	genomic RNA	subtype: C	1	231	6H,27I,41T,71D,116A,120G,148V,154K,169F,171C,178T,183G,187D,203R,204G,207Q,208G,210S
KT183292	503_13580_2	South Africa	21-Jan-2009	genomic RNA	subtype: C	1	231	6H,27I,41T,71D,116A,120G,148V,154K,169F,171C,178T,183G,187D,203R,204G,207Q,208G,210S
KT183293	503_13580_3	South Africa	21-Jan-2009	genomic RNA	subtype: C	1	231	6H,27I,41T,71D,116A,120G,148V,154K,169F,171C,178T,183G,187D,203R,204G,207Q,208G,210S
KT183294	503_13580_7	South Africa	21-Jan-2009	genomic RNA	subtype: C	1	231	6H,27I,41T,71D,116A,120G,148V,154K,169F,171C,178T,183G,187D,203R,204G,207Q,208G,210S
KT183295	503_13580_C8	South Africa	21-Jan-2009	genomic RNA	subtype: C	1	231	6H,27I,41T,71D,116A,120G,148V,154K,169F,171C,178T,183G,187D,203R,204G,207Q,208G,210S
KT183296	503_13580_D4	South Africa	21-Jan-2009	genomic RNA	subtype: C	1	231	6H,27I,41T,71D,116A,120G,148V,154K,169F,171C,178T,183G,187D,203R,204G,207Q,208G,210S
KT183297	503_13580_E3	South Africa	21-Jan-2009	genomic RNA	subtype: C	1	231	6H,10V,27I,41T,71D,116A,120G,148V,154K,169F,171C,178T,183G,187D,203R,204G,207Q,208G,210S
KT183298	503_13580_F5	South Africa	21-Jan-2009	genomic RNA	subtype: C	1	231	6H,27I,41T,71D,116A,120G,148V,154K,169F,171C,178T,183G,187D,203R,204G,207Q,208G,210S
KT183299	503_13580_H3	South Africa	21-Jan-2009	genomic RNA	subtype: C	1	231	6H,27I,41T,71D,116A,120G,148V,154K,169F,171C,178T,183G,187D,203R,204G,207Q,208G,210S
KT183300	503_13580_H6	South Africa	21-Jan-2009	genomic RNA	subtype: C	1	231	6H,27I,41T,71D,116A,120G,148V,154K,169F,171C,178T,183G,187D,203R,204G,207Q,208G,210S
KT183301	503_14197_T1	South Africa	04-Nov-2003	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,116A,124V,148V,169F,178T,180D,203R,208G,210S,230I
KT183302	503_14197_T22	South Africa	04-Nov-2003	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,116A,124V,148V,169F,178T,180D,203R,208G,210S
KT183303	503_14197_T28	South Africa	04-Nov-2003	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,116A,124V,148V,169F,178T,180D,187D,203R,208G,210S
KT183304	503_14197_T29	South Africa	04-Nov-2003	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,116A,124V,148V,169F,178T,180D,203R,208G,210S
KT183305	503_14197_T4	South Africa	04-Nov-2003	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,116A,124V,148V,169F,178T,180D,187D,203R,208G,210S
KT183306	503_14197_T4b	South Africa	04-Nov-2003	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,116A,124V,148V,169F,178T,180D,203R,208G,210S
KT183307	503_14197_T5	South Africa	04-Nov-2003	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,116A,124V,148V,169F,178T,180D,187D,203R,208G,210S
KT183308	503_14197_T5b	South Africa	04-Nov-2003	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,116A,124V,148V,169F,178T,180D,187D,203R,208G,210S
KT183309	503_14197_T7	South Africa	04-Nov-2003	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,116A,124V,148V,169F,178T,180D,187D,203R,208G,210S
KT183310	503_14197_T8	South Africa	04-Nov-2003	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,116A,124V,148V,169F,178T,180D,203R,208G,210S
KT183311	503_14197_T9	South Africa	04-Nov-2003	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,116A,124V,148V,169F,178T,180D,203R,208G,210S
KT183312	503_15344_T10_A1	South Africa	25-Nov-2004	genomic RNA	subtype: A1	1	231	6A,11I,12Y,14N,15M,27I,54L,58I,71D,83L,86A,92P,96I,111P,115L,116Q,120G,128D,148V,154K,169F,178T,183G,191I,203R,204G,207S,208G,210S
KT183313	503_15344_T23b_A1	South Africa	25-Nov-2004	genomic RNA	subtype: A1	1	231	6A,11I,12Y,14N,15M,27I,54L,58I,71D,83L,86A,92P,96I,111P,115L,116Q,120G,128D,148V,154K,169F,178T,183G,191I,203R,204G,207S,208G,210S
KT183316	503_15344_T3_A1	South Africa	25-Nov-2004	genomic RNA	subtype: A1	1	231	6A,11I,12Y,14N,15M,27I,54L,58I,71D,83L,86A,92P,96I,111P,115L,116Q,120G,128D,148V,154K,169F,178T,183G,191I,203R,204G,207S,208G,210S
KT183314	503_15344_T33_A1	South Africa	25-Nov-2004	genomic RNA	subtype: A1	1	231	6A,11I,12Y,14N,15M,27I,54L,58I,71D,83L,86A,92P,96I,111P,115L,116Q,120G,128D,148V,154K,169F,178T,183G,191I,203R,204G,207S,208G,210S
KT183315	503_15344_T38_A1	South Africa	25-Nov-2004	genomic RNA	subtype: A1	1	231	6A,11I,12Y,14N,15M,27I,54L,58I,71D,83L,86A,92P,96I,111P,115L,116Q,120G,128D,148V,154K,169F,178T,183G,191I,203R,204G,207S,208G,210S
KT183317	503_15383_LH1	South Africa	27-Feb-2008	genomic RNA	subtype: C	1	231	4R,6L,14G,27I,41T,50E,71D,83L,86L,96L,116A,120H,124V,128D,148V,169F,171V,178T,180D,187D,203R,204G,207A,208G,210S,216I
KT183318	503_15383_LH10	South Africa	27-Feb-2008	genomic RNA	subtype: C	1	231	4R,6L,14G,27I,41T,50E,71D,83L,86L,96L,116A,120H,124V,128D,148V,169F,171V,178T,180D,187D,203R,204G,207A,208G,210S,216I
KT183319	503_15383_LH12	South Africa	27-Feb-2008	genomic RNA	subtype: C	1	231	4R,6L,14G,27I,41T,50E,71D,83L,86L,96L,116A,120H,124V,128D,148V,169F,171V,178T,180D,187D,203R,204G,207A,208G,210S,216I
KT183320	503_15383_LH14	South Africa	27-Feb-2008	genomic RNA	subtype: C	1	231	4R,6L,14G,27I,41T,50E,71D,83L,86L,96L,116A,120H,124V,128D,148V,169F,171V,178T,180D,187D,203R,204G,207A,208G,210S,216I
KT183321	503_15383_LH15	South Africa	27-Feb-2008	genomic RNA	subtype: C	1	231	4R,6L,14G,27I,41T,50E,71D,83L,86L,96L,116A,120H,124V,128D,148V,169F,171V,178T,180D,187D,203R,204G,207A,208G,210S,216I
KT183322	503_15383_LH17	South Africa	27-Feb-2008	genomic RNA	subtype: C	1	231	4R,6L,14G,27I,41T,50E,71D,83L,86L,96L,116A,120H,124V,128D,146GS,148V,169F,171V,178T,180D,187D,203R,204G,207A,208G,210S,216I
KT183323	503_15383_LH2	South Africa	27-Feb-2008	genomic RNA	subtype: C	1	231	4R,6L,14G,27I,41T,50E,71D,83L,86L,96L,116A,120H,124V,128D,148V,169F,171V,178T,180D,187D,203R,204G,207A,208G,210S,216I
KT183324	503_15383_LH3	South Africa	27-Feb-2008	genomic RNA	subtype: C	1	231	4R,6L,14G,27I,41T,50E,71D,83L,86L,96L,116A,120H,124V,128D,148V,169F,171V,178T,180D,187D,203R,204G,207A,208G,210S,216I
KT183325	503_15383_LH4	South Africa	27-Feb-2008	genomic RNA	subtype: C	1	231	4R,6L,14G,27I,41T,50E,71D,83L,86L,96L,116A,120H,124V,128D,148V,169F,171V,178T,180D,187D,203R,204G,207A,208G,210S,216I
KT183326	503_15383_LH5	South Africa	27-Feb-2008	genomic RNA	subtype: C	1	231	4R,6L,14G,27I,41T,50E,71D,83L,86L,96L,116A,120H,124V,128D,148V,169F,171V,178T,180D,187D,203R,204G,207A,208G,210S,216I
KT183327	503_15383_LH6	South Africa	27-Feb-2008	genomic RNA	subtype: C	1	231	4R,6L,14G,27I,41T,50E,71D,83L,86L,96L,116A,120H,124V,128D,148V,169F,171V,178T,180D,187D,203R,204G,207A,208G,210S,216I
KT183336	503_15405_30	South Africa	10-Apr-2008	genomic RNA	subtype: C	1	231	6A,13T,14P,15L,16T,27I,31N,41T,71D,83L,86I,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KT183337	503_15405_62	South Africa	10-Apr-2008	genomic RNA	subtype: C	1	231	6A,13T,14P,15L,16T,27I,31N,41T,71D,83L,86I,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KT183338	503_15405_64	South Africa	10-Apr-2008	genomic RNA	subtype: C	1	231	6A,13T,14P,15L,16T,27I,31N,41T,71D,83L,86I,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KT183339	503_15405_79	South Africa	10-Apr-2008	genomic RNA	subtype: C	1	231	6A,13T,14P,15L,16T,27I,31N,41T,71D,83L,86I,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KT183340	503_15405_87	South Africa	10-Apr-2008	genomic RNA	subtype: C	1	231	6A,13T,14P,15L,16T,27I,31N,41T,71D,83L,86I,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KT183341	503_15405_92	South Africa	10-Apr-2008	genomic RNA	subtype: C	1	231	6A,13T,14P,15L,16T,27I,31N,41T,71D,83L,86I,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S

Genbank References: capsid (p24)

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