Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Ramalingam (2019)	Investigation on the variations in the capsid amino acid sequence of HIV-2 subtype A, HIV-1 subtype C, its influence on the susceptibility to tripartite motif 5 alpha (trim5 alpha) a retrovirus restriction factor and association with HIV pathogenesis	Indian J Med Microbiol. 2019 Oct-Dec;37(4):574-583	3.42e-167	59	59	Uncertain	Plasma	Direct PCR	Miscellaneous

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Accession	IsolateName	Country	Coll Date	MolType	Source	Note	FirstAA	LastAA	MutList
MK295745	15C1633	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,27I,41T,71D,83L,87Q,91V,110N,116A,120G,124V,148V,154K,169F,170R,180D,187D,203R,208G,225S
MK295717	15C757	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,36I,41T,71D,72A,83T,87Q,91V,110N,116A,120S,124V,148V,154K,169F,178T,180D,187D,203R,210S
MK295736	15c763	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,15L,27I,41T,71D,83L,86I,91V,116N,120G,124V,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
MK295718	15C769	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,27I,41T,71D,83L,91V,107S,116A,120S,124V,128D,148S,154K,169F,178T,187D,203R,208G
MK295737	15c781	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,16A,27I,41T,71D,75D,83L,87Q,96I,115V,116T,120A,128D,154K,169F,178T,187D,203R,208G,225S
MK295719	15N1200	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,27I,41T,71D,83L,86Q,87Q,91L,92P,110N,116A,120G,124V,148V,154K,169F,178T,183G,187D,203R,208G,225S
MK295720	15N1211	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,27I,36I,41T,59I,71D,72A,75D,83L,91V,110N,116A,120A,124V,148V,154K,169F,178T,187D,200N,203R,208G,225S
MK295748	15n2500	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,86I,91N,92P,116A,120S,128D,148V,169F,178T,187D,203R,208G,225S
MK295746	15N2604	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,15L,41T,71D,72V,83L,86P,87Q,91V,96I,116T,136M,154K,169F,178T,187D,203R,208G,217S
MK295744	15N2609	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,15L,27I,41T,71D,83L,96I,110N,116A,120G,124V,148V,154K,169F,178T,187D,203R,208G,225S
MK295749	16c012	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,15L,27I,41T,71D,83L,86L,116N,120G,124V,148V,154K,169F,178T,187D,200A,203R,208G,225S
MK295699	16c1240	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6A,14S,15L,27I,41T,52I,71D,85T,91V,108S,110N,116A,118T,120S,123L,136V,148V,169F,171I,175Q,178P,180D,185T,203T,207Q,208G
MK295700	16c1376	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,15L,27I,41T,71D,83L,86A,87Q,91V,96IM,116A,124V,148V,154K,169F,178T,180D,187D,203R,208G
MK295701	16c1387	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,87Q,110N,116A,120G,124V,148V,154K,169F,170R,178T,180D,187D,203R,208G,225S
MK295702	16c1405	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,14P,15M,17A,41T,71D,83L,86P,87Q,91V,96I,110N,116A,124V,154K,169F,178T,180D,187D,203R,208G,225S
MK295721	16C1438	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,15L,27I,31N,41T,71D,83L,87Q,92P,110N,116A,120S,124V,154K,169F,178T,180D,187D,203R,208G,225S
MK295722	16C1439	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,14P,27I,41T,71D,83L,87Q,91V,110N,116A,120G,128D,154K,169F,178T,180D,187D,203R,208G,225S
MK295723	16C1453	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,27I,71D,83T,116A,120G,121T,128D,148V,154K,169F,178T,187D,203R,208G,211I,225S
MK295724	16C1512	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,27I,41T,59I,71D,83L,87Q,91V,96V,110N,115V,116A,120G,124V,148V,169F,187D,208G,225S
MK295725	16C1538	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,15L,41T,71D,72V,83L,92P,116A,120S,124V,148V,169F,178T,180D,187D,203R,208G,210S
MK295726	16C1547	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,15L,16T,27I,30R,36I,41T,59I,71D,83L,110N,116A,120G,124V,128D,148V,154K,169F,178T,180D,187D,194S,203R,208G,225S
MK295727	16C1550	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,27I,41T,68L,71D,79D,83L,86I,87P,91L,116A,120S,124V,128D,148V,169F,178T,180D,187D,208G
MK295728	16C1602	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,14P,41T,59I,71D,72A,91V,116A,120S,124V,148V,153V,154K,169F,171I,178T,180D,187D,207S,208G,216A,225S
MK295703	16c1629	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,15L,27I,41T,71D,83L,110N,116A,120G,124V,148V,169F,178T,187D,203R,208G,225S
MK295704	16c1635	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,15L,27I,41T,71D,83L,116A,124V,148V,154K,169F,178T,187D,203R,208G,210S,217S,225S
MK295705	16c1667	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,27I,36I,41T,71D,79D,83L,91V,116A,120S,124V,148V,154K,169F,178T,180D,187D,203R,208G,225S
MK295738	16c1672	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,15L,27I,41T,71D,83L,86I,116A,124V,148V,154K,169F,178T,187D,191I,208G,210S
MK295706	16c1732	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,27I,41T,71D,116A,120S,124V,148V,169F,178T,180D,194S,203R
MK295739	16c1742	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,15L,41T,71D,78S,83L,115V,116A,120G,124V,148S,154K,169F,178T,187D,203R,208G,225S
MK295707	16c1806	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,14P,27I,41T,71D,75D,79D,83L,87P,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,211I
MK295708	16c1840	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,27I,41T,71D,83I,112A,116A,120S,124V,128D,154K,169F,178T,187D,203R,208G,225S
MK295729	16c1842	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,14S,15L,27I,36I,41T,71D,83I,86A,87Q,96I,116T,124V,135V,154K,169F,178T,187D,207S,208G,210S
MK295712	16c1857	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,15M,27I,41T,58A,71D,110N,116A,120S,124V,148V,169F,178T,180D,187D,203R,208G
MK295750	16n1728	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,14P,41T,71D,79D,83L,112A,116A,118I,120G,148A,154K,169F,178T,187D,203R,208G,216A,225S
MK295709	16n2247	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,14P,41T,71D,72V,79D,83L,91N,96L,116A,120S,124V,154K,169F,171V,178T,180D,187D,191I,203R,210S,225S
MK295710	16n2250	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	3E,4L,6L,14T,15M,27I,29A,41T,66I,71D,83L,86A,87Q,91V,96I,102T,113D,114H,116T,117R,124V,128D,148V,169F,178T,180D,187D,201V,203R,208G,211F
MK295730	16n2817	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,15L,27I,41T,71D,83L,115V,116A,120G,124V,146C,148V,154K,169F,178T,200I,204G,207Q,208G,230I
MK295711	16n3059	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,14P,16T,41T,71D,83L,116A,120S,124V,169F,178T,180D,187D,207Q,208G,225S
MK295731	16n3120	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,15L,27I,41T,58A,71D,83L,86I,87P,111P,116A,124V,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G,225S
MK295740	16n3137	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,14P,27I,41T,71D,83L,86A,87Q,91V,96I,116T,120S,128D,154K,169F,178T,187D,203R,208G,225S
MK295741	16n3250	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,15L,27I,41T,71D,83L,86P,87P,91L,107S,110N,116A,120S,124V,148V,154K,169F,178T,183G,187D,203R,208G,225S
MK295713	17c029	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,14P,27I,41T,71D,83L,86I,87P,96I,110N,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,211I,225S
MK295714	17c067	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,15L,27I,41T,71D,83L,115V,116A,120G,124V,128D,136M,148V,169F,178T,203R,208G,217S
MK295733	17c1524	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,14T,15L,27I,31G,41T,71D,83L,86Q,91V,107A,111P,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,204G,207Q,208G,210S,225S,230I
MK295732	17c478	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,14P,27I,36I,41T,71D,79D,83L,87Q,91V,96I,116T,120S,128D,148V,154K,169F,177G,178T,183H,187D,203R,208G,225S
MK295715	17n127	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,15L,27I,41T,71D,83L,86P,87Q,110N,116A,120S,124V,154K,169F,178T,187D,203R,208G,225S
MK295734	17n731	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,14S,15L,27I,36I,41T,71D,83L,91P,116A,120S,124V,128D,148V,154K,169F,178T,180D,194S,203R
MK295735	17n816	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,27I,36I,41T,71D,79D,83L,116A,120S,124V,148V,154K,169F,178T,180D,187D,203R,208G,225S
MK295743	18C64	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,27I,41T,71D,83L,88T,91A,115V,116A,120G,124V,128D,148V,169F,178T,187D,203R,208G,225S
MK295742	18N121	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,27I,41T,71D,91V,112A,116A,120S,124V,128D,148V,169F,178T,183H,200N,203R,208G,225S
MK295751	41	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,15L,41T,68I,71D,72V,116A,120S,124V,148S,154K,160S,169F,178T,180D,187D,203R,208G,210S,211I,229K
MK295752	42	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,14P,27I,41T,71D,83L,107S,115V,116A,120S,124V,128D,154K,169F,178T,187D,203R,208G,225S
MK295753	43	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,14T,27I,68I,71D,72V,79D,83L,86P,87Q,91L,96I,107A,116T,120S,148V,154K,169F,171A,178T,180D,208G,210Q
MK295754	44	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,110N,116A,120G,124V,148V,154K,169F,178T,180D,203R,225S
MK295755	45	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6M,14P,15L,27I,41T,71D,72A,83L,86I,87P,116A,120S,124V,154K,169F,178T,187D,207T,208G
MK295756	46	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,14P,27I,41T,71D,79D,83L,110N,116A,120A,124V,169F,178T,180D,190M,203R,208G,225S
MK295757	47	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,15L,27I,41T,71D,83L,86A,87Q,91V,96I,110N,116A,120S,124V,148V,154K,169F,178T,180D,203R,210S,225S
MK295747	50	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,58A,71D,72V,78I,83L,116A,120S,124V,128D,148V,154K,169F,178T,200N,203R,208G,210N
MK295716	DR1704	India	2015/2018	genomic RNA	plasma	subtype: C	1	231	6L,14P,27I,41T,71D,79D,83L,91N,116A,120S,124V,148V,154K,169F,178T,188S,203R,208G,225S

Genbank References: capsid (p24)

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