Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Onyango (2010)	HIV-2 capsids distinguish high and low virus load patients in a West African community cohort	Vaccine 28 (SUPPL 2), B60-B67 (2010)	1.28e-115	69	69	Naive	Plasma; PBMC	Direct PCR	NonM, HIV2, SIV

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Accession	IsolateName	Country	MolType	Source	Note	FirstAA	LastAA	MutList
GQ485448	CO301	Guinea-Bissau: Caio	genomic DNA		collected from January-April 2006	2	231	2P,5Q,6V,7G,9N,10Y,11A,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111A,112D,116Q,119F,120R,120R_A,121Q,122N,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,160S,162Q,163S,171S,177T,178D,179P,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485449	CO302	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,6V,7G,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83A,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_P,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485450	CO303	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5H,7G,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82A,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112D,116Q,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,160S,162Q,163S,171S,177T,178D,179A,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485451	CO304	Guinea-Bissau: Caio	genomic DNA		collected from January-April 2006	2	231	2P,5H,6V,7G,9N,10Y,11T,13I,14P,15L,26L,27I,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112D,116Q,119F,120R,120R_P,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,192R,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485452	CO305	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,6V,7A,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82A,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,162Q,163S,171S,178D,179P,180A,187Q,200L,201V,204G,207I,208N,209P,215L,226Q,230L,231M
GQ485453	CO306	Guinea-Bissau: Caio	genomic DNA		collected from January-April 2006	2	231	2P,5H,7G,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83A,86I,87X,88X,91L,92P,93A,96L,111V,112D,116Q,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,160S,162Q,163S,171S,177T,178D,179A,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485454	CO307	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,6V,7G,9N,10Y,11T,13M,14P,15L,26L,31K,33G,34A,36I,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82A,83Q,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,121G,122Q,122Q_N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,160S,162Q,163S,171S,177T,178D,179P,180A,187Q,200L,201V,204G,207M,208N,209P,215L,216S,221I,226Q,230L,231M
GQ485455	CO308	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5H,7G,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82A,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,121Q,122Q,122Q_N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,200L,201V,204G,207I,208N,209P,215L,226Q,230L,231M
GQ485456	CO309	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,6V,7G,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82A,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,121Q,122Q,122Q_N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,160S,162Q,163S,171S,177T,178D,179P,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485457	CO310	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,6V,7A,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112D,116Q,119F,120R,120R_P,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485458	CO311	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,7G,9N,10Y,11A,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,98D,111V,112D,116Q,119Y,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,160S,162Q,163S,171S,177T,178D,179A,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485459	CO312	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5H,7G,9N,10Y,11T,13I,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112D,116Q,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,160S,162Q,163S,171S,177T,178D,179A,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485460	CO313	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5H,7G,9N,10Y,11T,13I,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112D,116Q,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,160S,162Q,163S,171S,177T,178D,179A,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485461	CO314	Guinea-Bissau: Caio	genomic DNA		collected from January-April 2006	2	231	2P,5H,7G,9N,10Y,11T,13V,14P,15L,26L,31K,33R,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82T,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_P,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,160S,162Q,163S,171S,177T,178D,179P,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485462	CO315	Guinea-Bissau: Caio	genomic DNA		collected from January-April 2006	2	231	2P,5H,6V,7G,9N,10Y,11T,13I,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112D,116Q,119F,120R,120R_P,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485463	CO316	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5H,7G,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83A,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_P,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,162Q,163S,171S,177T,178D,179P,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,225S,226Q,230L,231M
GQ485464	CO317	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,7A,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112D,116Q,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,160S,162Q,163S,171S,177T,178D,179A,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485465	CO318	Guinea-Bissau: Caio	genomic DNA		collected from January-April 2006	2	231	2P,5S,7G,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82A,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112D,116Q,119F,120R,120R_P,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485466	CO319	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,7A,9N,10Y,11T,13V,14P,15L,18Q,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_P,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485467	CO320	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,6V,7A,9N,10Y,11T,13M,14P,15L,26L,29D,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_A,121Q,122N,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485468	CO321	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,6V,7A,9N,10Y,11T,13M,14P,15L,26L,29D,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82A,83Q,87X,88X,91L,92P,93A,96L,111V,112D,116Q,119F,120R,120R_P,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485469	CO322	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,6V,7G,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112D,116Q,119F,120R,120R_P,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,160S,162Q,163S,171S,177T,178D,179A,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485470	CO323	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5S,7G,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61E,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119Y,120R,120R_A,121Q,122N,124V,128N,131R,135Q,139Q,141C,146N,149N,154K,162Q,163N,171C,177T,178D,179P,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,221I,226Q,230L,231M
GQ485471	CO324	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,7A,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82A,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_P,121Q,122N,124V,128S,131R,135Q,136I,139Q,141C,146N,149N,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485472	CO325	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,7A,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82A,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_P,121Q,122N,124V,128S,131R,135Q,136I,139Q,141C,146N,149N,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485473	CO326	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5H,7G,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112D,116Q,119F,120R,120R_P,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,191I,200L,201V,204G,207I,208N,209P,215L,226Q,230L,231M
GQ485474	CO327	Guinea-Bissau: Caio	genomic DNA		collected from January-April 2006	2	231	2P,5H,6V,7G,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_P,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,191I,200L,201V,204G,207I,208N,209P,215L,226Q,230L,231M
GQ485475	CO328	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,7A,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485476	CO329	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,7A,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82T,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112D,116Q,119F,120R,120R_A,121Q,122N,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,160S,162Q,163S,171S,178D,179S,180A,187Q,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485477	CO330	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,7A,9N,10Y,11S,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,160S,162Q,163S,171S,177T,178D,179P,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485478	CO331	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,3L,5Q,6V,7G,9N,10Y,11S,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83A,86I,87X,88X,91L,92P,93A,96L,98D,111V,112E,116E,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,160S,162Q,163S,171S,177T,178D,179A,180A,187Q,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485479	CO332	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,7A,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83A,87X,88X,91L,92P,93A,96L,111V,112D,116Q,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,162Q,163S,171S,177T,178D,179V,180A,187Q,191I,200L,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485480	CO333	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,4T,5Q,6V,7G,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83A,86I,87X,88X,91L,92P,93A,96L,111V,112E,116E,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,160S,162Q,163S,171S,177T,178D,179A,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,221I,226Q,230L,231M
GQ485481	CO334	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,6V,7G,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112D,116Q,119F,120R,120R_P,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,160S,162Q,163S,171S,177T,178D,179P,180A,187Q,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485482	CO335	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,6V,7G,9N,10Y,11T,13M,14P,15L,26L,29D,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82A,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116E,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,162Q,163S,171S,177T,178D,179A,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,221I,226Q,230L,231M
GQ485483	CO336	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,6V,7G,9N,10Y,11T,13M,14P,15L,26L,29D,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82A,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116E,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,162Q,163S,171S,177T,178D,179A,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,221I,226Q,230L,231M
GQ485484	CO337	Guinea-Bissau: Caio	genomic DNA		collected from January-April 2006	2	231	2P,5Q,6V,7G,8S,9N,10Y,11T,13M,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,76K,79D,81N,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_P,121Q,122N,124V,128N,131R,132K,133,135Q,136I,137R,139Q,141C,146N,149N,154K,160T,162Q,163S,166N,167K,171S,177T,178D,179P,180A,184,185I,187Q,200L,201V,204E,207I,208N,209P,212K,215L,226Q,230L,231M
GQ485485	CO338	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,6V,7G,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,116E,118M_F,119R,120Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,160S,162Q,163S,171S,177T,178D,179A,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485486	CO339	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,7A,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_P,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485487	CO340	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5H,7G,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_P,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485488	CO341	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,6V,7G,9N,10Y,11T,13M,14P,15L,26L,29D,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82A,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116E,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,143K,146N,149N,153V,154K,162Q,163S,171S,177T,178D,179A,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,221I,226Q,230L,231M
GQ485489	CO342	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,3L,5Q,7A,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,97I,111V,112E,116P,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,160S,162Q,163S,171S,177T,178D,179P,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485490	CO343	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,6V,7A,9N,10Y,11S,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,160S,162Q,163S,171S,177T,178D,179P,180A,187Q,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485491	CO344	Guinea-Bissau: Caio	genomic DNA		collected from January-April 2006	2	231	2P,5Q,6V,7A,9N,10Y,11T,13L,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69V,70R,72I,79D,82A,83Q,86A,87X,88X,91L,92P,93A,96L,111V,112D,116Q,119F,120R,120R_A,121Q,122N,127R,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,200L,201V,204G,207T,208N,209P,215L,226Q,230L,231M
GQ485492	CO345	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,4T,5Q,6V,7A,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83A,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485493	CO346	Guinea-Bissau: Caio	genomic DNA		collected from January-April 2006	2	231	2P,5Q,6V,7A,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,71DE,72IM,79D,82V,83A,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485494	CO347	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5S,7A,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,36I,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82T,83A,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,162Q,163S,171S,177T,178D,179P,180A,183S,187Q,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485495	CO348	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5S,7G,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112D,116Q,119F,120R,120R_A,121Q,122N,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,162Q,163S,171S,177T,178D,179A,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,221I,226Q,230L,231M
GQ485496	CO349	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,7A,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83A,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_P,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,162Q,163N,171S,177T,178D,179P,180A,187Q,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485497	CO350	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,6V,7G,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83A,86I,87X,88X,91L,92P,93A,96L,111V,112D,116Q,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,160S,162Q,163S,171S,177T,178D,179A,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485498	CO351	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5S,6V,7G,9N,10Y,11S,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485499	CO352	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,6V,7G,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_P,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,160S,162Q,163S,171S,177T,178D,179P,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485500	CO353	Guinea-Bissau: Caio	genomic DNA		collected from January-April 2006	2	231	2P,5Q,6V,7A,9N,10Y,11S,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82T,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_P,121Q,122N,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485501	CO354	Guinea-Bissau: Caio	genomic DNA		collected from January-April 2006	2	231	2P,5H,7G,9N,10Y,11T,13V,14P,15L,26L,28K,29K,31K,33G,34A,37V,39G,41Q,47C,50Y,51N,52I,54Q,58C,61N,68I,69I,70R,72I,75K,79D,81N,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120K,120K_P,121Q,122N,124V,127R,128N,131R,132K,133,135Q,136I,139Q,141C,146N,149N,154K,162Q,163S,166N,167K,171S,177T,178D,179P,180A,184,187Q,200L,201V,204E,207M,208N,209P,215L,220R,223K,225S,226Q,229K,230L,231M
GQ485502	CO355	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,6V,7G,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112D,116Q,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,162Q,163S,171S,177T,178D,179A,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485503	CO356	Guinea-Bissau: Caio	genomic DNA		collected from January-April 2006	2	231	2P,5H,7G,9N,10Y,11S,13V,14P,15L,26L,29K,31K,33E,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82A,83Q,87X,88X,91L,92P,93A,96L,111V,112E,113K,116Q,119F,120R,120R_P,121Q,122N,124V,128S,131R,133*,135Q,136I,137E,139Q,141C,146N,149N,153V,162Q,163S,166N,167K,171S,177T,178D,179P,180A,187Q,200L,201V,204R,207I,208N,209P,213K,215L,226Q,230L,231M
GQ485504	CO357	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,6V,7G,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69V,70R,72I,79D,82A,83Q,87X,88X,91L,92P,93A,96L,111V,112D,116Q,119F,120R,120R_A,121Q,122N,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,160S,162Q,163S,171S,177T,178D,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485505	CO358	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5S,7A,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82A,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,160S,162Q,163S,171S,177T,178D,179P,180A,187Q,200L,201V,204G,207M,208N,209P,210S,215L,226Q,230L,231M
GQ485506	CO359	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5S,7A,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_P,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485507	CO360	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5S,6V,7G,9N,10Y,11T,13M,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82T,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_P,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485508	CO361	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5S,7G,9N,10Y,11T,13V,14P,15L,26L,31R,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_A,121Q,122N,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,160S,162Q,163S,171S,177T,178D,179P,180A,187Q,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485509	CO362	Guinea-Bissau: Caio	genomic DNA		collected from January-April 2006	2	231	2P,5Q,7A,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112D,116Q,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,162Q,163S,171S,177T,178D,179A,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485510	CO363	Guinea-Bissau: Caio	genomic DNA		collected from January-April 2006	2	231	2P,5Q,7A,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82A,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,121Q,122Q,122Q_N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,160S,162Q,163S,171S,177T,178D,179P,180A,187Q,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485511	CO364	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,6V,7G,9N,10Y,11T,13I,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,98D,111V,112E,116E,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,162Q,163S,171S,177T,178D,179P,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485512	CO365	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,7A,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,160S,162Q,163S,171S,177T,178D,179A,180A,187Q,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485513	CO366	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5S,7G,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,160S,162Q,163S,171S,177T,178D,179P,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485514	CO367	Guinea-Bissau: Caio	genomic DNA		collected from January-April 2006	2	231	2P,5S,7G,9N,10Y,11T,13V,14P,15L,26L,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112E,116Q,119F,120R,120R_A,121Q,122N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,154K,160S,162Q,163S,171S,177T,178D,179P,180A,187Q,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485515	CO368	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,6V,7G,9N,10Y,11T,13M,14P,15L,26L,29D,31K,33G,34A,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82A,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112D,116Q,119F,120R,120R_A,121Q,122N,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,160T,162Q,163S,171S,177T,178D,179S,180A,187Q,191I,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M
GQ485516	CO369	Guinea-Bissau: Caio	genomic RNA	plasma	collected from January-April 2006	2	231	2P,5Q,6V,7G,9N,10Y,11T,13I,14P,15L,26L,31K,33G,34A,36I,37V,39G,41Q,47C,50Y,52I,54Q,58C,61D,68I,69I,70R,72I,79D,82V,83Q,86I,87X,88X,91L,92P,93A,96L,111V,112D,116Q,119F,120R,121Q,122P_N,124V,128N,131R,135Q,136I,139Q,141C,146N,149N,153V,154K,160S,162Q,163S,171S,177T,178D,179P,180A,187Q,200L,201V,204G,207M,208N,209P,215L,226Q,230L,231M

Genbank References: capsid (p24)

Database

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