Genbank References: capsid (p24)

HOME Genotype-Rx Genotype-Pheno Genotype-Clinical hivdb program

Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Sanders-Buell (2021)	Direct Submission	Submitted (05-JAN-2021) U.S. Military HIV Research	1.27e-152	89					Unpublished

Download sequences

Accession	IsolateName	Country	MolType	Note	FirstAA	LastAA	MutList
MW443137	10204v0A_01	Uganda	genomic RNA	subtype: A1/C/D recombinant	1	231	6A,11I,15V,27I,31G,41T,50T,58I,71D,83L,87Q,92P,96I,111T,116R,120S,128D,148V,154K,169F,180D,187D,199R,200N,203R,208G,210S
MW443138	10204v0A_02	Uganda	genomic RNA	subtype: A1/C/D recombinant	1	231	6A,11I,15V,27I,31G,41T,50T,58I,71D,83L,87Q,92P,96I,111T,116R,120S,128D,148V,154K,169F,180D,187D,199R,200N,203R,208G,210S
MW443139	10204v0A_03	Uganda	genomic RNA	subtype: A1/C/D recombinant	1	231	6A,11I,15V,27I,31G,41T,50T,58I,71D,83L,87Q,92P,96I,111T,116R,120S,128D,148V,154K,169F,180D,187D,199R,200N,203R,208G,210S
MW443140	10204v0A_04	Uganda	genomic RNA	subtype: A1/C/D recombinant	1	231	6A,11I,15V,27I,31G,41T,50T,58I,71D,83L,87Q,92P,96I,111T,116R,120S,128D,148V,154K,169F,180D,187D,199R,200N,203R,208G,210S
MW443141	10204v0A_05	Uganda	genomic RNA	subtype: A1/C/D recombinant	1	231	6A,11I,15V,27I,31G,41T,50T,58I,71D,83L,87Q,92P,96I,111T,116R,120S,128D,148V,154K,169F,180D,187D,199R,200N,203R,208G,210S
MW443142	10204v0A_07	Uganda	genomic RNA	subtype: A1/C/D recombinant	1	231	6A,11I,15V,27I,31G,41T,50T,58I,71D,83L,87Q,92P,96I,111T,116R,120S,128D,148V,154K,169F,180D,187D,199R,200N,203R,208G,210S
MW443143	10204v0A_08	Uganda	genomic RNA	subtype: A1/C/D recombinant	1	231	6A,11I,15V,27I,31G,41T,50T,58I,71D,83L,87Q,92P,96I,111T,116R,120S,128D,148V,154K,169F,180D,187D,199R,200N,203R,208G,210S
MW443144	10204v0A_09	Uganda	genomic RNA	subtype: A1/C/D recombinant	1	231	6A,11I,15V,27I,31G,41T,50T,58I,71D,83L,87Q,92P,96I,111T,116R,120S,128D,148V,154K,169F,180D,187D,199R,200N,203R,208G,210S
MW443145	10204v0A_10	Uganda	genomic RNA	subtype: A1/C/D recombinant	1	231	6A,11I,15V,27I,31G,41T,50T,58I,71D,83L,87Q,92P,96I,111T,116R,120S,128D,148V,154K,169F,180D,187D,199R,200N,203R,208G,210S
MW443146	10204v0A_11	Uganda	genomic RNA	subtype: A1/C/D recombinant	1	231	6A,11I,15V,27I,31G,41T,50T,58I,71D,83L,87Q,92P,96I,111T,116R,120S,128D,148V,154K,169F,180D,187D,199R,200N,203R,208G,210S
MW443147	20178v01_01	Kenya	genomic RNA	subtype: A1	1	231	6A,11I,13S,14P,15L,27I,30R,31G,54M,58I,71D,83L,86A,111P,115V,116A,120G,123A,128D,148V,154K,160S,169F,178T,180D,200S,203R,207S,208G
MW443148	20178v01_02	Kenya	genomic RNA	subtype: A1	1	231	6A,11I,13S,14P,15L,27I,30R,31G,54M,58I,71D,83L,86A,111P,115V,116A,120G,123A,128D,148V,154K,160S,169F,178T,180D,200S,203R,207S,208G
MW443149	20178v01_03	Kenya	genomic RNA	subtype: A1	1	231	6A,11I,13S,14P,15L,27I,30R,31G,54M,58I,71D,83L,86A,111P,115V,116A,120G,123A,128D,148V,154K,160S,169F,178T,180D,200S,203R,207S,208G
MW443150	20178v01_04	Kenya	genomic RNA	subtype: A1	1	231	6A,11I,13S,14P,15L,27I,30R,31G,54M,58I,71D,83L,86A,111P,115V,116A,120G,123A,128D,148V,154K,160S,169F,178T,180D,200S,203R,207S,208G
MW443151	20178v01_06	Kenya	genomic RNA	subtype: A1	1	231	6A,11I,13S,14P,15L,27I,30R,31G,54M,58I,71D,83L,84Y,86A,111P,115V,116A,120G,123A,128D,148V,154K,160S,169F,178T,180D,200S,203R,207S,208G
MW443152	20178v01_07	Kenya	genomic RNA	subtype: A1	1	231	6A,11I,12HR,13S,14P,15L,27I,30R,31G,54M,58I,71D,83L,86A,111P,115V,116A,120G,123A,128D,148V,154K,160S,169F,178T,180D,200S,203R,207S,208G
MW443153	20178v01_08	Kenya	genomic RNA	subtype: A1	1	231	6A,11I,13S,14P,15L,27I,30R,31G,54M,58I,71D,83L,86A,111P,115V,116A,120G,123A,128D,148V,154K,160S,169F,178T,180D,200S,203R,207S,208G
MW443154	20178v01_09	Kenya	genomic RNA	subtype: A1	1	231	6A,11I,13S,14P,15L,27I,30R,31G,54M,58I,71D,83L,86A,111P,115V,116A,120G,123A,128D,148V,154K,160S,169F,178T,180D,200S,203R,207S,208G
MW443155	20178v01_10	Kenya	genomic RNA	subtype: A1	1	231	6A,11I,13S,14P,15L,27I,30R,31G,54M,58I,71D,83L,86A,111P,115V,116A,120G,123A,128D,148V,154K,160S,169F,178T,180D,200S,203R,207S,208G
MW443156	20178v01_11	Kenya	genomic RNA	subtype: A1	1	231	6A,11I,13S,14P,15L,27I,30R,31G,54M,58I,71D,83L,86A,111P,115V,116A,120G,123A,128D,148V,154K,160S,169F,178T,180D,200S,203R,207S,208G
MW443157	20233v01_01	Kenya	genomic RNA	subtype: A1	1	231	6A,11I,14N,15L,27I,31G,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
MW443158	20233v01_02	Kenya	genomic RNA	subtype: A1	1	231	6A,11I,14N,15L,27I,31G,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
MW443159	20233v01_03	Kenya	genomic RNA	subtype: A1	1	231	6A,11I,14N,15L,27I,31G,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
MW443160	20233v01_04	Kenya	genomic RNA	subtype: A1	1	231	6A,11I,14N,15L,27I,31G,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
MW443161	20233v01_05	Kenya	genomic RNA	subtype: A1	1	231	6A,11I,14N,15L,27I,31G,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
MW443162	20233v01_06	Kenya	genomic RNA	subtype: A1	1	231	6A,11I,14N,15L,27I,31G,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
MW443163	20233v01_07	Kenya	genomic RNA	subtype: A1	1	231	6A,11I,14N,15L,27I,31G,54M,58I,71D,82KR,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
MW443164	20233v01_09	Kenya	genomic RNA	subtype: A1	1	231	6A,11I,14N,15L,27I,31G,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
MW443165	20233v01_10	Kenya	genomic RNA	subtype: A1	1	231	6A,11I,14N,15L,27I,31G,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
MW443166	20233v01_11	Kenya	genomic RNA	subtype: A1	1	231	6A,11I,14N,15L,27I,31G,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
MW443167	30156v0B_01	Tanzania	genomic RNA	subtype: C/D recombinant	1	231	6L,27I,83I,91A,120S,148V,178T
MW443168	30156v0B_03	Tanzania	genomic RNA	subtype: C/D recombinant	1	231	6L,27I,83I,91A,120S,148V,178T
MW443169	30156v0B_04	Tanzania	genomic RNA	subtype: C/D recombinant	1	231	6L,27I,83I,91A,120S,148V,178T
MW443170	30156v0B_05	Tanzania	genomic RNA	subtype: C/D recombinant	1	231	6L,27I,83I,91A,120S,143K,148V,178T
MW443171	30156v0B_06	Tanzania	genomic RNA	subtype: C/D recombinant	1	231	6L,27I,83I,91A,120S,148V,178T
MW443172	30156v0B_07	Tanzania	genomic RNA	subtype: C/D recombinant	1	231	6L,27I,83I,91A,120S,148V,178T
MW443173	30156v0B_08	Tanzania	genomic RNA	subtype: C/D recombinant	1	231	6L,27I,83I,91A,120S,148V,178T,185T
MW443174	30156v0B_09	Tanzania	genomic RNA	subtype: C/D recombinant	1	231	6L,27I,83I,91A,120S,148V,178T
MW443175	30156v0B_10	Tanzania	genomic RNA	subtype: C/D recombinant	1	231	6L,27I,74HN,83I,91A,120S,148V,178T
MW443176	30156v0B_11	Tanzania	genomic RNA	subtype: C/D recombinant	1	231	6L,27I,83I,91A,120S,148V,178T
MW443177	30196v01_01	Tanzania	genomic RNA	subtype: A1/C/D recombinant	1	231	6L,14P,15L,27I,41T,71D,83L,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G
MW443178	30196v01_02	Tanzania	genomic RNA	subtype: A1/C/D recombinant	1	231	6L,14P,15L,27I,41T,71D,83L,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G
MW443179	30196v01_03	Tanzania	genomic RNA	subtype: A1/C/D recombinant	1	231	6L,14P,15L,27I,41T,71D,83L,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G
MW443180	30196v01_04	Tanzania	genomic RNA	subtype: A1/C/D recombinant	1	231	6L,14P,15L,27I,41T,71D,83L,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G
MW443181	30196v01_05	Tanzania	genomic RNA	subtype: A1/C/D recombinant	1	231	6L,14P,15L,27I,41T,71D,83L,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G
MW443182	30196v01_06	Tanzania	genomic RNA	subtype: A1/C/D recombinant	1	231	6L,14P,15L,27I,41T,57NS,71D,83L,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G
MW443183	30196v01_07	Tanzania	genomic RNA	subtype: A1/C/D recombinant	1	231	6L,14P,15L,27I,41T,71D,83L,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G
MW443184	30196v01_09	Tanzania	genomic RNA	subtype: A1/C/D recombinant	1	231	6L,14P,15L,27I,41T,71D,83L,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G
MW443185	30196v01_10	Tanzania	genomic RNA	subtype: A1/C/D recombinant	1	231	6L,14P,15L,27I,41T,71D,83L,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G
MW443186	30196v01_11	Tanzania	genomic RNA	subtype: A1/C/D recombinant	1	231	6L,14P,15L,27I,41T,71D,83L,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G
MW443187	30486v01_01	Tanzania	genomic RNA	subtype: C	1	231	6L,27I,41T,50S,54S,71D,83L,116A,128D,148V,169F,178T,187D,208G,210S,225S
MW443188	30486v01_02	Tanzania	genomic RNA	subtype: C	1	231	6L,27I,41T,50S,54S,71D,83L,116A,128D,148V,169F,178T,187D,208G,210S,225S
MW443189	30486v01_03	Tanzania	genomic RNA	subtype: C	1	231	6L,27I,41T,50S,54S,71D,83L,116A,128D,148V,169F,178T,187D,208G,210S,225S
MW443190	30486v01_04	Tanzania	genomic RNA	subtype: C	1	231	6L,27I,41T,50S,54S,71D,83L,104IM,116A,128D,148V,169F,178T,187D,208G,210S,225S
MW443191	30486v01_05	Tanzania	genomic RNA	subtype: C	1	231	6L,27I,41T,50S,54S,71D,83L,116A,128D,148V,169F,178T,187D,208G,210S,225S
MW443192	30486v01_06	Tanzania	genomic RNA	subtype: C	1	231	6L,27I,41T,50S,54S,71D,83L,116A,128D,148V,169F,178T,187D,208G,210S,225S
MW443193	30486v01_07	Tanzania	genomic RNA	subtype: C	1	231	6L,27I,41T,50S,54S,71D,83L,116A,128D,148V,169F,178T,187D,208G,210S,225S
MW443194	30486v01_08	Tanzania	genomic RNA	subtype: C	1	231	6L,27I,41T,50S,54S,71D,83L,116A,128D,148V,169F,178T,187D,208G,210S,225S
MW443195	30486v01_10	Tanzania	genomic RNA	subtype: C	1	231	6L,27I,41T,50S,54S,71D,83L,116A,128D,148V,169F,178T,187D,208G,210S,225S
MW443196	30486v01_11	Tanzania	genomic RNA	subtype: C	1	231	6L,27I,41T,50S,54S,71D,83L,116A,128D,148V,169F,178T,187D,208G,210S,225S
MW443197	40139v0J_03	Thailand	genomic DNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,92P,128D,148V,178T,200A,207T,208G,225GS
MW443198	40139v0J_04	Thailand	genomic DNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,92P,128D,148V,178T,200A,207T,208G,225S
MW443199	40139v0J_05	Thailand	genomic DNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,92P,128D,148V,178T,200A,207T,208G,225S
MW443200	40139v0J_06	Thailand	genomic DNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,92P,128D,148V,178T,200A,207T,208G,225S
MW443201	40139v0J_07	Thailand	genomic DNA	subtype: CRF01_AE	1	231	6A,12HR,14P,15L,31G,33N,54M,58I,92P,128D,148V,178T,200A,207T,208G,225S
MW443202	40139v0J_09	Thailand	genomic DNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,81G,92P,128D,148V,178T,200A,207T,208G,225S
MW443203	40139v0J_10	Thailand	genomic DNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,92P,128D,148V,178T,200A,207T,208G,225S
MW443204	40139v0J_11	Thailand	genomic DNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,92P,128D,148V,178T,200A,207T,208G,225S
MW443205	40139v0J_12	Thailand	genomic DNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,92P,128D,148V,178T,200A,207T,208G,225S
MW443206	40195v1a_01	Thailand	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,79D,87P,92P,96L,110N,128D,178T,200S,203R,207T,208G,225S
MW443207	40195v1a_02	Thailand	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,79D,87P,92P,96L,110N,128D,178T,200S,203R,207T,208G,225S
MW443208	40195v1a_03	Thailand	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,79D,87P,92P,96L,110N,128D,178T,200S,203R,207T,208G,225S
MW443209	40195v1a_04	Thailand	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,79D,87P,92P,96L,110N,128D,178T,199KR,200S,203R,207T,208G,225S
MW443210	40195v1a_05	Thailand	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,79D,87P,92P,96L,110N,128D,178T,200S,203R,207T,208G,225S
MW443211	40195v1a_07	Thailand	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,79D,87P,92P,96L,110N,128D,178T,200S,203R,207T,208G,225S
MW443212	40195v1a_08	Thailand	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,79D,87P,92P,96L,110N,128D,178T,200S,203R,207T,208G,225S
MW443213	40195v1a_09	Thailand	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,79D,87P,92P,96L,110N,128D,178T,200S,203R,207T,208G,225S
MW443214	40195v1a_10	Thailand	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,79D,87P,92P,96L,110N,128D,178T,200S,203R,207T,208G,225S
MW443215	40195v1a_11	Thailand	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,79D,87P,92P,96L,110N,128D,178T,200S,203R,207T,208G,225S
MW443216	40503v01_02	Thailand	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,79D,87P,92P,96L,128D,178T,200S,203R,207T,208G,225S
MW443217	40503v01_03	Thailand	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,79D,87P,92P,96L,128D,178T,200S,203R,207T,208G,225S
MW443218	40503v01_04	Thailand	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,79D,87P,92P,96L,128D,178T,200S,203R,207T,208G,225S
MW443219	40503v01_07	Thailand	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,79D,87P,92P,96L,120S,128D,178T,200S,203R,207T,208G,225S
MW443220	40503v01_08	Thailand	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,79D,87P,92P,96L,120S,128D,178T,200S,203R,207T,208G,225S
MW443221	40503v01_10	Thailand	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,79D,87P,92P,96L,128D,178T,200S,203R,207T,208G,225S
MW443222	40503v01_12	Thailand	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,79D,87P,92P,96L,128D,178T,200S,203R,207T,208G,225S
MW443223	40503v01_13	Thailand	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,79D,87P,92P,96L,128D,178T,200S,203R,207T,208G,225S
MW443224	40503v01_14	Thailand	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,79D,87P,92P,96L,128D,178T,200S,203R,207T,208G,225S
MW443225	40503v01_15	Thailand	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,79D,87P,92P,96L,120S,128D,178T,200S,203R,207T,208G,225S

Genbank References: capsid (p24)

Database

Resources

Team