<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Ragupathy (2016) PCR amplicon free whole genome charecterization of Human immunodeficiency virus type -1 genotypes Unpublished 1.52e-151 27         Unpublished

Download sequences

AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
KX228801Read1_HIV_GSpain2009genomic RNAsubtype: G12316A,71D,72A,83T,86P,87Q,92P,96I,113D,116R,120S,148V,154K,169F,178T,187D,203R,208G,217S
KX228799Read10_HIV_CSouth Africa2009genomic RNAsubtype: C12316L,15M,27I,41T,50S,54S,71D,83L,116A,128D,148V,169F,178T,180D,187D,203R,208G,210S,225S
KX228800Read11_HIV_CRF01_AEChina2009genomic RNAsubtype: CRF01_AE12316A,14S,15L,31G,33N,54M,58I,92P,120S,128D,178T,200S,207T,208G
KX228809Read2_HIV_F2Cameroon2010genomic RNAsubtype: F212316L,14S,15L,27I,71D,92P,116A,120S,124V,128D,148V,154K,169F,171I,178T,187D,225S,230I
KX228802Read23_HIV_BUSA2010genomic RNAsubtype: B12316M,83L,87Q,91V,96L,110N,116A,120H
KX228803Read24_HIV_BUSA2010genomic RNAsubtype: B12316L,14S,15L,41T,83L,87Q,91V,96L,116A,124V,154K,170R,179P,180D,203R,207A,208G
KX228804Read25_HIV_GroupOSpain2001genomic RNAsubtype: Group O12314P,6A,11I,15L,26A,33N,36I,41M,48I,50Y,52I,58A,59I,64G,66L,68V,72V,79D,83T,86P,87P,88V,91L,92P,96I,100T,111Q,116H,118T,119T_S,120S,122Q,128D,131R,132K,135V,141M,143K,148V,154K,178T,200Q,208G,216V,225T
KX228805Read26_HIV_BUSA2011genomic RNAsubtype: B12314R,6L,83L,116A,120S,128D,132Q,136M,148V,154K,178T,216S
KX228806Read27_HIV_BUSA2010genomic RNAsubtype: B12316L,27I,41T,71D,83L,87Q,120S,154K,180D,225S
KX228807Read28_HIV_BUSA2009genomic RNAsubtype: B12316L,12Y,15L,16A,41T,83L,111P,116A,120S,148V,178T
KX228808Read29_HIV_URFUganda2011genomic RNAsubtype: URF_A1D12316L,14N,15M,27I,54M,58I,72V,83L,91V,120G,123A,148V,154K,180D,183S,208G,225S
KX228819Read3_HIV_URFCameroon2008genomic RNAsubtype: URF_A1G12316A,14S,15M,27I,41T,54M,58I,71D,83T,87Q,92P,98D,120G,124V,135V,148V,169F,178T,200S,203R,208G
KX228810Read30_HIV_A1Uganda2010genomic RNAsubtype: A112316A,27I,45D,54M,58I,71D,83L,86A,87Q,92P,96I,98D,111I,116T,120G,128D,148V,154K,169F,178T,183G,191I,200S,203R,207A,208G,225S
KX228811Read31_HIV_URFUganda2010genomic RNAsubtype: URF_A1D12312V,6A,11I,12Y,15L,33N,54M,56M,58V,70R,83L,87Q,92P,96I,107I,111V,115V,120S,128D,131R,148V,154K,171V,180D
KX228812Read32_HIV_GSpain2005genomic RNAsubtype: G12316V,14P,15L,27I,41T,71D,83L,86P,87Q,91F,92P,96I,116A,124V,148V,154K,169F,178T,180D,187D,207T,208G,210S,225S
KX228813Read33_HIV_CRF24_BGSpain2008genomic RNAsubtype: CRF24_BG12316A,10P,11I,71D,83M,86Q,87Q,92P,96I,116T,148V,154K,169F,178T,183G,187D,203R,208G,210S
KX228814Read34_HIV_CRF02_AGAngola2006genomic RNAsubtype: CRF02_AG12316A,11T,14N,15L,27I,31G,54M,58I,71D,83L,87Q,92P,115M,120S,128D,148V,154K,169F,178T,200S,207T,208G
KX228815Read35_HIV_A1Tanzania2005genomic RNAsubtype: A112316A,10W,11T,14N,15L,27I,41T,50H,54M,58I,71D,83L,92P,107A,111P,115L,116Q,120S,124V,128D,148V,169F,171C,180D,183T,191I,200S,203R,207A,208G,225S
KX228816Read36_HIV_CRF22_01A1Cameroon2010genomic RNAsubtype: CRF22_01A112316A,15V,31G,33N,54M,58I,71D,83I,91N,92P,110N,120S,148V,169F,180D,187D,200S,207T,208G
KX228817Read37_HIV_CRF22_01A1Cameroon2010genomic RNAsubtype: CRF22_01A112313I,6A,11A,14P,15L,31G,33N,54M,58I,71D,83M,91H,92P,110N,120G,148V,169F,178T,200A,203R,207T,208G
KX228818Read38_HIV_CBrazil2007genomic RNAsubtype: C12316L,14P,16A,17A,41T,71D,83L,91V,96V,120G,148V,154K,169F,178T,187D,200S,203R,208G
KX228820Read4_HIV_CAngola2007genomic RNAsubtype: C12316A,41T,71D,116A,120G,154K,169F,178T,180D,187D,203R,208G
KX228821Read5_HIV_CNigeria2008genomic RNAsubtype: C12316L,27I,41T,71D,83L,110S,116A,120S,124V,128D,148V,154K,169F,178T,183G,203R,208G,225S
KX228822Read6_HIV_CRF04_cpxGreece2000genomic RNAsubtype: CRF04_CPX12316A,14T,15M,27I,44A,45D,54C,58I,71D,83T,86A,91V,92Q,110N,120S,148V,169F,171V,178T,191I,200S,207T,208G,225S
KX228823Read7_HIV_CRF02_AGCameroon2008genomic RNAsubtype: CRF02_AG12316A,14P,41T,54M,58I,71D,86I,91V,110N,120S,135V,148V,154K,169F,177G,178T,180D,200I,203R,204G,208G,230I
KX228824Read8_HIV_CRF02_AGCameroon2008genomic RNAsubtype: CRF02_AG12316A,10W,14S,27I,54M,58I,71D,83L,87Q,92P,96L,120S,128D,129M,148V,169F,171A,178T,183G,200S,207T,208G,225S
KX228825Read9_HIV_BUSA2009genomic RNAsubtype: B123115L,41A,50G,83T,91V,96L,116A,120H,132K,148S,154K

Database

Resources

Team