Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Deymier (2015)	Heterosexual Transmission of Subtype C HIV-1 Selects Consensus-Like Variants without Increased Replicative Capacity or Interferon-alpha Resistance	PLoS Pathog. 11 (9), E1005154 (2015)	6.88e-150	156	12	Naive	Plasma	SGS	Acute infection

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Accession	IsolateName	Country	Coll Date	MolType	Note	FirstAA	LastAA	MutList
KR820294	Z331F_15Apr09_PL_NFLG_SGA11	Zambia	15-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,113D,116A,120G,128D,148V,154K,169F,177S,178T,187D,203R,208G
KR820295	Z331F_15Apr09_PL_NFLG_SGA12	Zambia	15-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,116T,120S,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G
KR820296	Z331F_15Apr09_PL_NFLG_SGA13	Zambia	15-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G
KR820297	Z331F_15Apr09_PL_NFLG_SGA14	Zambia	15-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,116T,120S,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G
KR820298	Z331F_15Apr09_PL_NFLG_SGA15	Zambia	15-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G
KR820299	Z331F_15Apr09_PL_NFLG_SGA16	Zambia	15-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,116T,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S
KR820300	Z331F_15Apr09_PL_NFLG_SGA17	Zambia	15-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,116T,120S,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G
KR820301	Z331F_15Apr09_PL_NFLG_SGA19	Zambia	15-Apr-2009	genomic RNA	subtype: C	1	231	6L,41T,71D,83M,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G
KR820302	Z331F_15Apr09_PL_NFLG_SGA20	Zambia	15-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G
KR820303	Z331F_15Apr09_PL_NFLG_SGA21	Zambia	15-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,113D,116A,120G,128D,148V,154K,169F,177S,178T,187D,203R,208G
KR820304	Z331F_15Apr09_PL_NFLG_SGA22	Zambia	15-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G
KR820305	Z331F_15Apr09_PL_NFLG_SGA23	Zambia	15-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,116T,120S,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G
KR820306	Z331F_15Apr09_PL_NFLG_SGA24	Zambia	15-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G
KR820307	Z331F_15Apr09_PL_NFLG_SGA3	Zambia	15-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,113D,116A,120G,128D,148V,154K,169F,177S,178T,187D,203R,208G
KR820308	Z331F_15Apr09_PL_NFLG_SGA4	Zambia	15-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,113D,116A,120G,128D,148V,154K,169F,177S,178T,187D,203R,208G
KR820309	Z331F_15Apr09_PL_NFLG_SGA5	Zambia	15-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,116T,120S,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G
KR820310	Z331F_15Apr09_PL_NFLG_SGA6	Zambia	15-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83I,116T,120S,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G
KR820311	Z331F_15Apr09_PL_NFLG_SGA7	Zambia	15-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83I,116T,120S,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G
KR820312	Z331F_15Apr09_PL_NFLG_SGA8	Zambia	15-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,113D,116A,120G,128D,148V,154K,169F,177S,178T,187D,203R,208G
KR820313	Z331F_15Apr09_PL_NFLG_SGA9	Zambia	15-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,116T,120S,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G
KR820314	Z331M_18Apr09_PL_NFLG_SGA10	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,116T,120S,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G
KR820315	Z331M_18Apr09_PL_NFLG_SGA11	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,116T,120S,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G,213K
KR820316	Z331M_18Apr09_PL_NFLG_SGA12	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,116T,120S,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G
KR820317	Z331M_18Apr09_PL_NFLG_SGA15	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,116T,120S,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G
KR820318	Z331M_18Apr09_PL_NFLG_SGA16	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,116T,120S,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G
KR820319	Z331M_18Apr09_PL_NFLG_SGA3	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,116T,120S,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G
KR820320	Z331M_18Apr09_PL_NFLG_SGA6	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,116T,120S,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G
KR820321	Z331M_18Apr09_PL_NFLG_SGA8	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,116T,120S,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G
KR820322	Z331M_18Apr09_PL_NFLG_SGA9	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,116T,120S,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G
KR820323	Z331M_18Apr09_PL_NFLG_TF_Conse	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,116T,120S,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G
KR820324	Z3576F_28Mar09_PL_NFLG_SGA1	Zambia	28-Mar-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,75D,83L,91V,92V,116A,118I,120G,124V,148V,154K,169F,177G,178T,187D,203R,208G
KR820325	Z3576F_28Mar09_PL_NFLG_TF_Cons	Zambia	28-Mar-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,75D,83L,91V,92V,116A,118I,120G,124V,148V,154K,169F,177G,178T,187D,203R,208G
KR820326	Z3576M_18Apr09_PL_NFLG_SGA10	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,75D,83L,116A,118I,120G,148V,154K,169F,177G,178T,187D,203R,208G
KR820327	Z3576M_18Apr09_PL_NFLG_SGA12	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,75D,83L,91V,92V,116A,118I,120G,124V,148V,154K,169F,177G,178T,187D,203R,208G
KR820328	Z3576M_18Apr09_PL_NFLG_SGA14	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,75D,83L,91V,92V,116A,118I,120G,124V,148V,154K,169F,177G,178T,187D,203R,208G
KR820329	Z3576M_18Apr09_PL_NFLG_SGA16	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,75D,83L,91V,92V,116A,118I,120G,124V,148V,154K,169F,177G,178T,187D,203R,208G
KR820330	Z3576M_18Apr09_PL_NFLG_SGA17	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,75D,83L,91V,92V,116A,118I,120G,124V,148V,154K,169F,177G,178T,187D,203R,208G
KR820331	Z3576M_18Apr09_PL_NFLG_SGA18	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71N,75D,83L,116A,118I,120G,148V,154K,169F,177G,178T,187D,203R,208G
KR820332	Z3576M_18Apr09_PL_NFLG_SGA2	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,75D,83L,116A,118I,120G,148V,154K,169F,177G,178T,187D,203R,208G
KR820333	Z3576M_18Apr09_PL_NFLG_SGA22	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,75D,83L,91V,92V,116A,118I,120G,124V,148V,154K,169F,177G,178T,187D,203R,208G
KR820334	Z3576M_18Apr09_PL_NFLG_SGA3	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,75D,83L,91V,92V,116A,118I,120G,124V,148V,154K,169F,177G,178T,187D,203R,208G
KR820335	Z3576M_18Apr09_PL_NFLG_SGA4	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,75N,83L,91V,92V,116A,118I,120G,124V,148V,154K,169F,177G,178T,187D,203R,208G
KR820336	Z3576M_18Apr09_PL_NFLG_SGA5	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,75D,83L,91V,92V,116A,118I,120G,124V,148V,154K,169F,177G,178T,187D,203R,208G
KR820337	Z3576M_18Apr09_PL_NFLG_SGA6	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,75D,83L,91V,92V,116A,118I,120G,124V,148V,154K,169F,177G,178T,187D,203R,208G
KR820338	Z3576M_18Apr09_PL_NFLG_SGA7	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,75D,83L,91V,92V,116A,118I,120G,124V,148V,154K,169F,177G,178T,187D,203R,208G
KR820339	Z3576M_18Apr09_PL_NFLG_SGA8	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,75D,83L,91V,92V,116A,118I,120G,124V,148V,154K,169F,177G,178T,187D,203R,208G
KR820340	Z3576M_18Apr09_PL_NFLG_SGA9	Zambia	18-Apr-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,75D,83L,91V,92V,116A,118I,120G,124V,148V,154K,169F,177G,178T,187D,203R,208G
KR820341	Z3618F_11Jul09_PL_NFLG_SGA1	Zambia	11-Jul-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,50T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820342	Z3618F_11Jul09_PL_NFLG_SGA11	Zambia	11-Jul-2009	genomic RNA	subtype: C	1	231	6L,14V,15L,27I,41T,50T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,208G
KR820343	Z3618F_11Jul09_PL_NFLG_SGA13	Zambia	11-Jul-2009	genomic RNA	subtype: C	1	231	6L,14V,15L,27I,41T,50T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820344	Z3618F_11Jul09_PL_NFLG_SGA14	Zambia	11-Jul-2009	genomic RNA	subtype: C	1	231	6L,14V,15L,27I,41T,50T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820345	Z3618F_11Jul09_PL_NFLG_SGA15	Zambia	11-Jul-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,50T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820346	Z3618F_11Jul09_PL_NFLG_SGA16	Zambia	11-Jul-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,50T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820347	Z3618F_11Jul09_PL_NFLG_SGA17	Zambia	11-Jul-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820348	Z3618F_11Jul09_PL_NFLG_SGA18	Zambia	11-Jul-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,50T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820349	Z3618F_11Jul09_PL_NFLG_SGA19	Zambia	11-Jul-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,50T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820350	Z3618F_11Jul09_PL_NFLG_SGA20	Zambia	11-Jul-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,50T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820351	Z3618F_11Jul09_PL_NFLG_SGA21	Zambia	11-Jul-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,50T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820352	Z3618F_11Jul09_PL_NFLG_SGA3	Zambia	11-Jul-2009	genomic RNA	subtype: C	1	231	6L,14V,15L,27I,41T,50T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820353	Z3618F_11Jul09_PL_NFLG_SGA4	Zambia	11-Jul-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,115V,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820354	Z3618F_11Jul09_PL_NFLG_SGA5	Zambia	11-Jul-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820355	Z3618F_11Jul09_PL_NFLG_SGA6	Zambia	11-Jul-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,50T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820356	Z3618F_11Jul09_PL_NFLG_SGA8	Zambia	11-Jul-2009	genomic RNA	subtype: C	1	231	6L,14V,15L,27I,41T,50T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820357	Z3618F_11Jul09_PL_NFLG_SGA9	Zambia	11-Jul-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,50T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820366	Z3618M__18Jun09_PL_NFLG_TF_Con	Zambia	18-Jun-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820358	Z3618M_18Jun09_PL_NFLG_SGA1	Zambia	18-Jun-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820359	Z3618M_18Jun09_PL_NFLG_SGA12	Zambia	18-Jun-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820360	Z3618M_18Jun09_PL_NFLG_SGA13	Zambia	18-Jun-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820361	Z3618M_18Jun09_PL_NFLG_SGA14	Zambia	18-Jun-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820362	Z3618M_18Jun09_PL_NFLG_SGA2	Zambia	18-Jun-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820363	Z3618M_18Jun09_PL_NFLG_SGA6	Zambia	18-Jun-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820364	Z3618M_18Jun09_PL_NFLG_SGA7	Zambia	18-Jun-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820365	Z3618M_18Jun09_PL_NFLG_SGA9	Zambia	18-Jun-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KR820367	Z3678F_23Sep09_PL_NFLG_SGA1	Zambia	23-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820368	Z3678F_23Sep09_PL_NFLG_SGA10	Zambia	23-Sep-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820369	Z3678F_23Sep09_PL_NFLG_SGA11	Zambia	23-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820370	Z3678F_23Sep09_PL_NFLG_SGA13	Zambia	23-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,41T,50R,71D,83L,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820371	Z3678F_23Sep09_PL_NFLG_SGA14	Zambia	23-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820372	Z3678F_23Sep09_PL_NFLG_SGA15	Zambia	23-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820373	Z3678F_23Sep09_PL_NFLG_SGA16	Zambia	23-Sep-2009	genomic RNA	subtype: C	1	231	15L,41T,50R,71D,83L,91V,116A,120A,128D,148V,169F,171I,178T,200S,203R,225S
KR820374	Z3678F_23Sep09_PL_NFLG_SGA17	Zambia	23-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820375	Z3678F_23Sep09_PL_NFLG_SGA18	Zambia	23-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820376	Z3678F_23Sep09_PL_NFLG_SGA19	Zambia	23-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820377	Z3678F_23Sep09_PL_NFLG_SGA20	Zambia	23-Sep-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820378	Z3678F_23Sep09_PL_NFLG_SGA22	Zambia	23-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820379	Z3678F_23Sep09_PL_NFLG_SGA24	Zambia	23-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820380	Z3678F_23Sep09_PL_NFLG_SGA25	Zambia	23-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,41T,50R,71D,83L,87Q,91V,96L,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820381	Z3678F_23Sep09_PL_NFLG_SGA26	Zambia	23-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,40S,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820382	Z3678F_23Sep09_PL_NFLG_SGA28	Zambia	23-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820383	Z3678F_23Sep09_PL_NFLG_SGA31	Zambia	23-Sep-2009	genomic RNA	subtype: C	1	231	15L,41T,50R,71D,83L,91V,116A,120A,128D,148V,169F,171I,178T,200S,203R,225S
KR820384	Z3678F_23Sep09_PL_NFLG_SGA5	Zambia	23-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820385	Z3678M_17Sep09_PL_NFLG_SGA10	Zambia	17-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820386	Z3678M_17Sep09_PL_NFLG_SGA11	Zambia	17-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820387	Z3678M_17Sep09_PL_NFLG_SGA12	Zambia	17-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820388	Z3678M_17Sep09_PL_NFLG_SGA13	Zambia	17-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820389	Z3678M_17Sep09_PL_NFLG_SGA2	Zambia	17-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820390	Z3678M_17Sep09_PL_NFLG_SGA3	Zambia	17-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820391	Z3678M_17Sep09_PL_NFLG_SGA6	Zambia	17-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820392	Z3678M_17Sep09_PL_NFLG_SGA9	Zambia	17-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820393	Z3678M_17Sep09_PL_NFLG_TF_Cons	Zambia	17-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KR820394	Z4248F_11Jun10_PL_NFLG_SGA1	Zambia	11-Jun-2010	genomic RNA	subtype: C	1	231	6M,27I,41T,71D,91V,116A,120S,124V,148V,169F,178T,187D,203R,208G
KR820395	Z4248F_11Jun10_PL_NFLG_SGA10	Zambia	11-Jun-2010	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,116A,120S,124V,148V,169F,183H,187D,203R,208G
KR820396	Z4248F_11Jun10_PL_NFLG_SGA11	Zambia	11-Jun-2010	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,116A,120S,124V,148V,169F,178T,183H,187D,203R,208G
KR820397	Z4248F_11Jun10_PL_NFLG_SGA12	Zambia	11-Jun-2010	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,116A,120S,124V,148V,169F,183H,187D,203R,208G
KR820398	Z4248F_11Jun10_PL_NFLG_SGA13	Zambia	11-Jun-2010	genomic RNA	subtype: C	1	231	6M,27I,41T,71D,91V,116A,120S,124V,148V,169F,178T,187D,203R,208G
KR820399	Z4248F_11Jun10_PL_NFLG_SGA14	Zambia	11-Jun-2010	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,116A,120S,124V,148V,169F,183H,187D,203R,208G
KR820400	Z4248F_11Jun10_PL_NFLG_SGA15	Zambia	11-Jun-2010	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,116A,120S,124V,148V,169F,183H,187D,203R,208G
KR820401	Z4248F_11Jun10_PL_NFLG_SGA16	Zambia	11-Jun-2010	genomic RNA	subtype: C	1	231	6M,27I,41T,71D,91V,116A,120S,124V,148V,169F,178T,187D,203R,208G
KR820402	Z4248F_11Jun10_PL_NFLG_SGA18	Zambia	11-Jun-2010	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,116A,120S,124V,148V,169F,183H,187D,203R,208G
KR820403	Z4248F_11Jun10_PL_NFLG_SGA19	Zambia	11-Jun-2010	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,116A,120S,124V,148V,169F,183H,187D,203R,208G
KR820404	Z4248F_11Jun10_PL_NFLG_SGA2	Zambia	11-Jun-2010	genomic RNA	subtype: C	1	231	6M,27I,41T,71D,91V,116A,120S,124V,148V,169F,178T,187D,203R,208G
KR820405	Z4248F_11Jun10_PL_NFLG_SGA20	Zambia	11-Jun-2010	genomic RNA	subtype: C	1	231	6M,27I,41T,71D,91V,116A,120S,124V,148V,169F,178T,187D,203R,208G
KR820406	Z4248F_11Jun10_PL_NFLG_SGA22	Zambia	11-Jun-2010	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,116A,120S,124V,148V,169F,183H,187D,203R,208G
KR820407	Z4248F_11Jun10_PL_NFLG_SGA23	Zambia	11-Jun-2010	genomic RNA	subtype: C	1	231	6M,27I,41T,71D,91V,116T,120S,124V,148V,169F,178T,187D,203R,208G
KR820408	Z4248F_11Jun10_PL_NFLG_SGA3	Zambia	11-Jun-2010	genomic RNA	subtype: C	1	231	6M,27I,41T,71D,91V,116A,120S,124V,148V,169F,178T,187D,203R,208G
KR820409	Z4248F_11Jun10_PL_NFLG_SGA4	Zambia	11-Jun-2010	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,116A,120S,124V,148V,169F,183H,187D,203R,208G
KR820410	Z4248F_11Jun10_PL_NFLG_SGA5	Zambia	11-Jun-2010	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,116A,120S,124V,148V,169F,183H,187D,203R,208G
KR820411	Z4248F_11Jun10_PL_NFLG_SGA6	Zambia	11-Jun-2010	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,116A,120S,124V,148V,169F,180D,187D,203R,208G
KR820412	Z4248F_11Jun10_PL_NFLG_SGA7	Zambia	11-Jun-2010	genomic RNA	subtype: C	1	231	6M,27I,41T,71D,91V,116T,120S,124V,148V,169F,178T,187D,203R,208G
KR820413	Z4248F_11Jun10_PL_NFLG_SGA8	Zambia	11-Jun-2010	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,116A,120S,124V,148V,169F,183H,187D,203R,208G
KR820414	Z4248F_11Jun10_PL_NFLG_SGA9	Zambia	11-Jun-2010	genomic RNA	subtype: C	1	231	6M,27I,41T,71D,91V,116A,120S,124V,148V,169F,178T,187D,203R,208G
KR820415	Z4248M_4Jun10_PL_NFLG_SGA1	Zambia	04-Jun-2010	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,116A,120S,124V,148V,169F,180D,187D,203R,208G
KR820416	Z4248M_4Jun10_PL_NFLG_SGA2	Zambia	04-Jun-2010	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,116A,120S,124V,148V,169F,180D,187D,203R,208G
KR820417	Z4248M_4Jun10_PL_NFLG_SGA3	Zambia	04-Jun-2010	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,116A,120S,124V,148V,169F,180D,187D,203R,208G
KR820418	Z4248M_4Jun10_PL_NFLG_SGA4	Zambia	04-Jun-2010	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,116A,120S,124V,148V,169F,180D,187D,203R,208G
KR820419	Z4248M_4Jun10_PL_NFLG_SGA5	Zambia	04-Jun-2010	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,116A,120S,124V,148V,169F,180D,187D,203R,208G
KR820420	Z4248M_4Jun10_PL_NFLG_SGA7	Zambia	04-Jun-2010	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,116A,120S,124V,148V,169F,180D,187D,203R,208G
KR820421	Z4248M_4Jun10_PL_NFLG_TF_Conse	Zambia	04-Jun-2010	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,116A,120S,124V,148V,169F,180D,187D,203R,208G
KR820422	Z4473F_7Jun11_PL_NFLG_SGA1	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,170R,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820423	Z4473F_7Jun11_PL_NFLG_SGA11	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,170R,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820424	Z4473F_7Jun11_PL_NFLG_SGA12	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,170R,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820425	Z4473F_7Jun11_PL_NFLG_SGA13	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,170R,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820426	Z4473F_7Jun11_PL_NFLG_SGA14	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,170R,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820427	Z4473F_7Jun11_PL_NFLG_SGA15	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,170R,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820428	Z4473F_7Jun11_PL_NFLG_SGA16	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,170R,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820429	Z4473F_7Jun11_PL_NFLG_SGA17	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,170R,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820430	Z4473F_7Jun11_PL_NFLG_SGA18	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91T,96V,116A,120S,124V,148V,154K,169F,170R,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820431	Z4473F_7Jun11_PL_NFLG_SGA19	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,160S,169F,170R,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820432	Z4473F_7Jun11_PL_NFLG_SGA2	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,170R,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820433	Z4473F_7Jun11_PL_NFLG_SGA21	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,170R,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820434	Z4473F_7Jun11_PL_NFLG_SGA22	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,170R,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820435	Z4473F_7Jun11_PL_NFLG_SGA23	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,170R,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820436	Z4473F_7Jun11_PL_NFLG_SGA24	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,170R,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820437	Z4473F_7Jun11_PL_NFLG_SGA25	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,170R,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820438	Z4473F_7Jun11_PL_NFLG_SGA26	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,96V,116A,120S,124V,148V,154K,169F,170R,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820439	Z4473F_7Jun11_PL_NFLG_SGA28	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,170R,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820440	Z4473M_7Jun11_PL_NFLG_SGA1	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820441	Z4473M_7Jun11_PL_NFLG_SGA10	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820442	Z4473M_7Jun11_PL_NFLG_SGA2	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820443	Z4473M_7Jun11_PL_NFLG_SGA3	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820444	Z4473M_7Jun11_PL_NFLG_SGA4	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820445	Z4473M_7Jun11_PL_NFLG_SGA6	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820446	Z4473M_7Jun11_PL_NFLG_SGA7	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820447	Z4473M_7Jun11_PL_NFLG_SGA8	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820448	Z4473M_7Jun11_PL_NFLG_SGA9	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,171V,178T,180D,187D,203R,208G,210S,211I,225S
KR820449	Z4473M_7Jun11_PL_NFLG_TF_Conse	Zambia	07-Jun-2011	genomic RNA	subtype: C	1	231	6L,14P,41T,83L,91N,116A,120S,124V,148V,154K,169F,171V,178T,180D,187D,203R,208G,210S,211I,225S

Genbank References: capsid (p24)

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