<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Yamaguchi (2018) Universal Target Capture of HIV Sequences From NGS Libraries Front Microbiol 9, 2150 (2018) 1.34e-151 31 31 Naive Plasma NGS Molecular epidemiology

Download sequences

AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
MH705146112-11Cameroon2006genomic RNAsubtype: F212316H,12Y,14S,16T,27I,50S,54S,71D,83L,87Q,92P,116A,120S,124V,148V,154K,169F,183G,187D,207T,208G,225S
MH7051491225-51Cameroon2003genomic RNAsubtype: O12312V,4P,6A,11M,14P,15L,26A,33N,36I,41M,48I,50Y,52I,58A,59I,64G,66L,68V,72V,79D,83A,86P,87P,88I,91L,92P,96I,100T,110N,111Q,112R,115V,116H,118I,120R,121A,122N,128D,131R,132K,135V,141M,143K,148V,154K,178T,183S,199R,200Q,204S,208G,216V,225S
MH705145144-26Cameroon20-Jul-2005genomic RNAsubtype: G12316A,10S,71D,83T,86Q,87Q,96I,116I,148V,169F,178T,180D,187D,203R,208G
MH70515020-02Cameroon2006genomic RNAsubtype: O12312V,6A,15L,26A,33N,36I,41M,48L,50Y,52I,58A,59I,64G,66L,68V,72V,75D,79D,83T,86P,87P,88V,91L,92P,96I,100T,111Q,112A,116H,118T,119T_G,120S,122Q,123A,128D,131R,132K,135V,141M,143K,148V,178T,200Q,208G,216V,225T,229K,230I
MH7051542049Democratic Republic 1987genomic RNAsubtype: A12316A,27I,54M,58I,71D,92P,110N,120S,128D,148V,154K,160S,169F,171A,177G,178T,180D,208G
MH7051582106Democratic Republic 1987genomic RNAsubtype: A12316A,12F,15V,27I,54M,58I,71D,83L,87Q,92P,96L,111P,120G,128D,148V,153V,154K,169F,171I,178T,183G,187D,200S,203R,207A,208G,225S
MH705148296Cameroon2003genomic RNAsubtype: O12312V,4P,6A,11I,12Y,15L,26A,33N,36I,41M,50Y,52V,54S,55L,58A,59I,64G,66L,68V,72V,79D,83T,86P,87A,88V,91L,92P,96I,100T,111Q,116H,118I,119T_S,120S,122N,128D,131R,132K,135V,141M,143K,148V,171V,183S,200Q,208G,216V,225A
MH705141363-24Cameroon2006genomic RNAsubtype: CRF1312316A,36I,41T,55T,71D,83I,86P,87Q,91L,92P,96I,102G,116A,120S,135V,148V,154K,169F,178T,183S,187D,208G
MH70514342-877Uganda1995genomic RNAsubtype: D12316L,14P,27I,41T,83L,86A,87Q,91V,96L,98D,120S,124V,148V,180D,187D,208G
MH705136459-16Cameroon2004genomic RNAsubtype: CRF0212316A,14P,15M,27I,31G,54M,58I,71D,83L,92P,110N,120G,123S,128D,148V,154K,169F,178T,183G,207T,208G,210S
MH70516150Democratic Republic 1987genomic RNAsubtype: A12316A,14N,15L,41T,54M,58I,71D,83T,92P,96I,120S,128D,148V,169F,178T,200S,207A,208G
MH7051375056135Senegal1996genomic RNAsubtype: C12316L,14S,15L,31G,33N,41T,71D,83I,91V,115V,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,199R,200N,207Q,208G,225A
MH70515170641Democratic Republic 1987genomic RNAsubtype: A12313I,6T,12Y,14S,15L,26A,27I,41T,48A,54M,58I,71D,92Q,120S,148V,169F,178T,183G,203R,207A,208G
MH705142770-8Cameroon27-Jun-2006genomic RNAsubtype: URF12316A,14S,15M,27I,54M,58I,71D,87Q,92P,120S,128D,148V,169F,171A,178T,180D,200S,203R,208G
MH7051388128965South Africa1998genomic RNAsubtype: C123127I,41T,71D,83L,91N,110S,116A,120A,128D,148V,154K,169F,178T,187D,203R,208G,210S
MH705140814-43Cameroon16-Apr-2008genomic RNAsubtype: CRF0612316A,10P,11I,15M,27I,44A,54M,58I,71D,92P,110N,111V,120S,148V,169F,178T,180D,187D,203R,208G,210S
MH70516287-2580Democratic Republic 1987genomic RNAsubtype: G12316A,41T,54S,58I,71D,83I,86Q,87Q,92P,96I,116R,120S,148V,169F,178T,183G,203R,208G,225S
MH7051399505343Senegal1996genomic RNAsubtype: CRF0612316A,14S,26A,27I,54V,58I,77V,78V,83M,87Q,91F,92P,93A,96L,120S,148V,169F,171A,178T,183V,187D,207S,208G,209V,225S
MH705144A1699Cameroon2001genomic RNAsubtype: F212316L,15L,71D,92P,116A,120S,124V,148V,169F,178T,183G,187D,208G,225S,230I
MH705147AB260Cameroon1999genomic RNAsubtype: O12312V,4P,6A,11M,14P,15L,26A,33N,36I,41M,48I,50Y,52I,58A,59I,64G,66L,68V,72V,79D,83S,86P,87V,88V,91L,92P,96L,100T,111Q,115V,116Q,118I,120S,121Q,128D,131R,132K,135V,141M,143K,148V,154K,178T,180D,200Q,208G,216V,225T
MH705156P3844Democratic Republic 1987genomic RNAsubtype: K72317W,14P,15L,33N,41T,54S,59I,71D,83L,92P,110N,116A,120S,124V,148V,154K,158Q,169F,180D,187D,205M,208G,210S,225S
MH705157P4039Democratic Republic 1987genomic RNAsubtype: A12316A,11T,15L,54M,58V,71D,83L,92P,110N,111V,120G,128D,131R,148V,169F,178T,180D,200S,203R,207A,208G
MH705155P406Democratic Republic 1987genomic RNAsubtype: G12316A,71D,86I,87Q,92P,96I,116R,120S,148V,169F,178T,183G,187D,203R,208G
MH705159PBS0724Democratic Republic 1987genomic RNAsubtype: A12316A,14N,15L,27I,41T,54M,58I,71D,91V,92Q,110N,120G,148V,169F,178T,200S,203R,207A,208G,225S
MH705160PBS1189Democratic Republic 1987genomic RNAsubtype: F112316L,14S,15L,27I,71D,83L,92P,116Q,118I,120G,124V,148V,169F,178T,183S,187D,208G,225S,230I
MH705134PBS1191Democratic Republic 1987genomic RNAsubtype: G12316A,14P,71D,83M,86Q,87Q,92P,96I,98D,110N,116R,120S,148V,169F,178T,183G,187D,203R,208G
MH705163PBS1195Democratic Republic 1987genomic RNAsubtype: A212316A,50G,54M,71D,86A,92P,120S,132K,148V,169F,178T,187D,200S,203R,208G,225S
MH705135PBS1342Democratic Republic 1987genomic RNAsubtype: URF12316A,15V,27I,54M,58I,71D,92P,116A,120S,124V,128D,148V,154K,169F,178T,187D,208G,210S
MH705152PBS5635Democratic Republic 1987genomic RNAsubtype: D12316L,15L,27I,33N,83L,120S,148V,180D,208G
MH705153PBS6126Democratic Republic 1987genomic RNAsubtype: A12316A,11I,12Y,15L,27I,33N,54M,58V,71D,83Q,87Q,92P,111P,120G,131R,148V,169F,178T,180D,203R,207A,208G
MH705133PBS888Democratic Republic 1987genomic RNAsubtype: A12316T,14P,15M,31G,54M,58I,71D,83I,92P,120S,128D,148V,169F,178T,200S,203R,207S,208G

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