Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Lewitus (2022)	HIV-1 infections with multiple founders associate with the development of neutralization breadth	Unpublished	8.26e-151	359

Download sequences

Accession	IsolateName	Country	Coll Date	Clone	MolType	Source	Note	FirstAA	LastAA	MutList
OM824550	10463v09_01	Uganda	2011	10463v09_01_34days	genomic RNA		subtype: A1/D	1	231	6A,14P,15L,27I,30R,54M,58I,83L,87Q,92P,96L,111P,120G,128D,148V,169F,171A,178T,183G,191I,200S,207S,208G
OM824551	10463v09_02	Uganda	2011	10463v09_02_34days	genomic RNA		subtype: A1/D	1	231	6A,14P,15L,27I,30R,54M,58I,83L,87Q,92P,96L,111P,120G,128D,148V,169F,171A,178T,183G,191I,200S,207S,208G
OM824552	10463v09_04	Uganda	2011	10463v09_04_34days	genomic RNA		subtype: A1/D	1	231	6A,14P,15L,27I,30R,54M,58I,83L,87Q,92P,96L,111P,120G,128D,148V,169F,171A,178T,183G,191I,200S,207S,208G
OM824553	10463v09_05	Uganda	2011	10463v09_05_34days	genomic RNA		subtype: A1/D	1	231	6A,14P,15L,27I,30R,54M,58I,83L,87Q,92P,96L,111P,120G,128D,148V,169F,171A,178T,183G,191I,200S,207S,208G
OM824554	10463v09_06	Uganda	2011	10463v09_06_34days	genomic RNA		subtype: A1/D	1	231	6A,14P,15L,27I,30R,54M,58I,83L,87Q,92P,96L,111P,120G,128D,148V,169F,171A,178T,183G,191I,200S,207S,208G
OM824555	10463v09_07	Uganda	2011	10463v09_07_34days	genomic RNA		subtype: A1/D	1	231	6A,14P,15L,27I,30R,54M,58I,83L,87Q,92P,96L,111P,120G,128D,148V,169F,171A,178T,183G,191I,200S,207S,208G
OM824556	10463v09_08	Uganda	2011	10463v09_08_34days	genomic RNA		subtype: A1/D	1	231	6A,14P,15L,27I,30R,54M,58I,83L,87Q,92P,96L,111P,120G,128D,148V,169F,171A,177AV,178T,183G,191I,200S,207S,208G
OM824557	10463v09_09	Uganda	2011	10463v09_09_34days	genomic RNA		subtype: A1/D	1	231	6A,14P,15L,27I,30R,54M,58I,83L,87Q,92P,96L,111P,120G,128D,148V,169F,171A,178T,183G,191I,200S,207S,208G
OM824558	10463v09_10	Uganda	2011	10463v09_10_34days	genomic RNA		subtype: A1/D	1	231	6A,14P,15L,27I,30R,54M,58I,83L,87Q,92P,96L,111P,120G,128D,148V,169F,171A,178T,183G,200S,207S,208G
OM824559	10463v09_11	Uganda	2011	10463v09_11_34days	genomic RNA		subtype: A1/D	1	231	6A,14P,15L,27I,30R,54M,58I,83L,87Q,92P,96L,111P,120G,128D,148V,169F,171A,178T,183G,191I,200S,207S,208G
OM824560	10502v01_01	Uganda	2012	10502v01_01_24days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,27I,31G,48V,54M,58I,71D,83L,92P,96L,110N,118I,120G,128D,148V,154K,169F,177C,180D,187D,203R,208G,225S
OM824561	10502v01_02	Uganda	2012	10502v01_02_24days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,27I,31G,48V,54M,58I,71D,83L,92P,96L,110N,118I,120G,128D,148V,154K,169F,177C,180D,187D,203R,208G,221A,225S
OM824562	10502v01_03	Uganda	2012	10502v01_03_24days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,27I,31G,48V,54M,58I,71D,83L,92P,96L,110N,118I,120G,128D,148V,154K,159EG,169F,177C,180D,187D,203R,208G,225S
OM824563	10502v01_04	Uganda	2012	10502v01_04_24days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,27I,31G,48V,54M,58I,71D,83L,92P,96L,110N,118I,120G,128D,148V,154K,169F,177C,180D,187D,203R,208G,225S
OM824564	10502v01_05	Uganda	2012	10502v01_05_24days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,27I,31G,48V,54M,58I,71D,83L,92P,96L,110N,118I,120G,128D,148V,154K,169F,177C,180D,187D,203R,208G,225S
OM824565	10502v01_06	Uganda	2012	10502v01_06_24days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,27I,31G,48V,54M,58I,71D,83L,92P,96L,110N,118I,120G,128D,148V,154K,169F,177C,180D,187D,203R,208G,225S
OM824566	10502v01_07	Uganda	2012	10502v01_07_24days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,27I,31G,48V,54M,58I,71D,83L,92P,96L,110N,118I,120G,128D,148V,154K,169F,177C,180D,187D,203R,208G,225S
OM824567	10502v01_08	Uganda	2012	10502v01_08_24days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,27I,31G,48V,54M,58I,71D,83L,92P,96L,110N,118I,120G,128D,148V,154K,169F,177C,180D,187D,203R,208G,225S
OM824568	10502v01_09	Uganda	2012	10502v01_09_24days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,27I,31G,48V,54M,58I,71D,83L,92P,96L,110N,118I,120G,128D,148V,154K,169F,177C,180D,187D,203R,208G,225S
OM824569	10502v01_10	Uganda	2012	10502v01_10_24days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,27I,31G,48V,54M,58I,71D,83L,92P,96L,110N,118I,120G,128D,148V,154K,169F,177C,180D,187D,191AV,203R,208G,225S
OM824590	10742v01_01	Uganda	2013	10742v01_01_5days	genomic RNA		subtype: A1	1	231	14P,15L,27I,41T,71D,83L,87P,91V,110N,116A,120G,124V,148V,154K,169F,178T,187D,203R,208G,225S
OM824591	10742v01_02	Uganda	2013	10742v01_02_5days	genomic RNA		subtype: A1	1	231	14P,15L,27I,41T,71D,83L,87P,91V,110N,116A,120G,124V,148V,154K,169F,178T,187D,203R,208G,225S
OM824592	10742v01_03	Uganda	2013	10742v01_03_5days	genomic RNA		subtype: A1	1	231	14P,15L,27I,41T,71D,83L,87P,91V,110N,116A,120G,124V,148V,154K,169F,178T,187D,203R,208G,225S
OM824593	10742v01_04	Uganda	2013	10742v01_04_5days	genomic RNA		subtype: A1	1	231	14P,15L,27I,41T,71D,83L,87P,91V,94DG,110N,116A,120G,124V,148V,154K,169F,178T,187D,203R,208G,225S
OM824594	10742v01_05	Uganda	2013	10742v01_05_5days	genomic RNA		subtype: A1	1	231	14P,15L,27I,41T,71D,83L,87P,91V,110N,116A,120G,124V,148V,154K,169F,178T,187D,203R,208G,225S
OM824595	10742v01_06	Uganda	2013	10742v01_06_5days	genomic RNA		subtype: A1	1	231	14P,15L,27I,41T,71D,83L,87P,91V,94DG,110N,116A,120G,124V,148V,154K,169F,178T,187D,203R,208G,225S
OM824596	10742v01_07	Uganda	2013	10742v01_07_5days	genomic RNA		subtype: A1	1	231	14P,15L,27I,41T,71D,83L,87P,91V,110N,116A,120G,124V,148V,154K,169F,178T,187D,203R,208G,225S
OM824597	10742v01_08	Uganda	2013	10742v01_08_5days	genomic RNA		subtype: A1	1	231	14P,15L,27I,41T,71D,83L,87P,91V,110N,116A,120G,124V,148V,154K,169F,178T,187D,203R,208G,225S
OM824598	10742v01_09	Uganda	2013	10742v01_09_5days	genomic RNA		subtype: A1	1	231	7QR,14P,15L,27I,41T,71D,83L,87P,91V,110N,116A,120G,124V,148V,154K,169F,178T,187D,203R,208G,219PQ,225S
OM824599	10742v01_10	Uganda	2013	10742v01_10_5days	genomic RNA		subtype: A1	1	231	14P,15L,27I,41T,71D,83L,87P,91V,110N,116A,120G,124V,148V,154K,169F,178T,187D,203R,208G,225S
OM824600	10753v0B_01	Uganda	2013	10753v0B_01_21days	genomic RNA		subtype: A1/D	1	231	6L,27I,36I,54L,79D,83L,91N,92P,116A,120S,148V,171V,180D
OM824601	10753v0B_03	Uganda	2013	10753v0B_03_21days	genomic RNA		subtype: A1/D	1	231	6L,27I,36I,54L,66V,79D,83L,91N,92P,116A,120S,148V,171V,180D
OM824602	10753v0B_04	Uganda	2013	10753v0B_04_21days	genomic RNA		subtype: A1/D	1	231	6L,27I,36I,54L,79D,83L,91N,92P,116A,120S,148V,171V,180D
OM824603	10753v0B_05	Uganda	2013	10753v0B_05_21days	genomic RNA		subtype: A1/D	1	231	6L,27I,36I,54L,79D,83L,91N,92P,116A,120S,148V,171V,180D,223R
OM824604	10753v0B_06	Uganda	2013	10753v0B_06_21days	genomic RNA		subtype: A1/D	1	231	6L,27I,36I,54L,79D,83L,91S,92P,116A,120S,148V,171V,180D
OM824605	10753v0B_07	Uganda	2013	10753v0B_07_21days	genomic RNA		subtype: A1/D	1	231	6L,27I,36I,54L,79D,83L,91N,92P,116A,120S,148V,171V,180D
OM824606	10753v0B_08	Uganda	2013	10753v0B_08_21days	genomic RNA		subtype: A1/D	1	231	6L,27I,36I,54L,79D,83L,91N,92P,116A,120S,148V,171V,180D
OM824607	10753v0B_09	Uganda	2013	10753v0B_09_21days	genomic RNA		subtype: A1/D	1	231	6L,27I,36I,54L,79D,83L,91N,92P,116A,120S,148V,171V,180D
OM824608	10753v0B_11	Uganda	2013	10753v0B_11_21days	genomic RNA		subtype: A1/D	1	231	6L,27I,36I,54L,79D,83L,91N,92P,116A,120S,148V,171V,180D
OM824609	10753v0B_12	Uganda	2013	10753v0B_12_21days	genomic RNA		subtype: A1/D	1	231	6L,27I,36I,54L,79D,83L,91N,92P,116A,120S,148V,171V,180D
OM824610	20115v01_01	Kenya	2011	20115v01_01_2days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,27I,50T,54M,58I,71D,83T,91V,111T,116A,120G,128D,148V,163E,169F,171V,178T,180D,200S,207T,208G
OM824611	20115v01_02	Kenya	2011	20115v01_02_2days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,27I,50T,54M,58I,71D,83T,91V,111T,116A,120G,128D,148V,163E,169F,171V,178T,180D,200S,207T,208G
OM824612	20115v01_03	Kenya	2011	20115v01_03_2days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,27I,50T,54M,58I,71D,83T,91V,111T,116A,120G,128D,148V,163E,169F,171V,178T,180D,200S,207T,208G
OM824613	20115v01_04	Kenya	2011	20115v01_04_2days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,27I,50T,54M,58I,71D,83T,91V,111T,116A,120G,128D,148V,163E,169F,171V,178T,180D,200S,207T,208G
OM824614	20115v01_05	Kenya	2011	20115v01_05_2days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,27I,50T,54M,58I,71D,83T,91V,111T,116A,120G,128D,148V,163E,169F,171V,178T,180D,200S,207T,208G
OM824616	20115v01_07	Kenya	2011	20115v01_07_2days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,27I,50T,54M,58I,71D,83T,91V,111T,116A,120G,128D,148V,163E,169F,171V,178T,180D,200S,207T,208G
OM824618	20115v01_08	Kenya	2011	20115v01_08_2days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,27I,50T,54M,58I,71D,83T,91V,111T,116A,120G,128D,148V,163E,169F,171V,178T,180D,200S,207T,208G
OM824619	20115v01_10	Kenya	2011	20115v01_10_2days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,27I,50T,54M,58I,71D,83T,91V,111T,116A,120G,128D,148V,163E,169F,171V,178T,180D,200S,207T,208G
OM824620	20115v01_11	Kenya	2011	20115v01_11_2days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,27I,50T,54M,58I,71D,83T,91V,111T,116A,120G,128D,148V,163E,169F,171V,178T,180D,200S,207T,208G
OM824621	20115v01_12	Kenya	2011	20115v01_12_2days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,27I,50T,54M,58I,71D,83T,91V,111T,116A,120G,128D,148V,163E,169F,171V,178T,180D,200S,207T,208G
OM824813	20355v01_01	Kenya	2010	20355v01_01_2days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,21S,27I,41T,54M,58I,71D,83T,91P,92V,96L,111P,120G,128D,148V,154K,169F,180D,183G,200S,203R,207A,208G,210S
OM824814	20355v01_02	Kenya	2010	20355v01_02_2days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,21S,27I,41T,54M,58I,71D,83T,91P,92V,96L,111P,120G,128D,148V,154K,169F,180D,183G,200S,203R,207A,208G,210S
OM824815	20355v01_03	Kenya	2010	20355v01_03_2days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,21S,27I,41T,54M,58I,71D,83T,91P,92V,96L,111P,120G,128D,148V,154K,169F,180D,183G,200S,203R,207A,208G,210S
OM824816	20355v01_04	Kenya	2010	20355v01_04_2days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,21S,27I,41T,54M,58I,71D,83T,91P,92V,96L,111P,120G,128D,148V,154K,169F,180D,183G,200S,203R,207A,208G,210S
OM824817	20355v01_05	Kenya	2010	20355v01_05_2days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,21S,27I,41T,54M,58I,71D,83T,91P,92V,96L,111P,120G,128D,148V,154K,169F,180D,183G,200S,203R,207A,208G,210S
OM824818	20355v01_06	Kenya	2010	20355v01_06_2days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,21S,27I,41T,54M,58I,71D,83T,91P,92V,96L,111P,120G,128D,148V,154K,169F,180D,183G,200S,203R,207A,208G,210S
OM824819	20355v01_07	Kenya	2010	20355v01_07_2days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,21S,27I,41T,54M,58I,71D,83T,91P,92V,96L,111P,120G,128D,148V,154K,169F,180D,183G,200S,203R,207A,208G,210S
OM824820	20355v01_08	Kenya	2010	20355v01_08_2days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,21S,27I,41T,54M,58I,71D,83T,91P,92V,96L,111P,120G,128D,148V,154K,169F,180D,183G,200S,203R,207A,208G,210S
OM824821	20355v01_09	Kenya	2010	20355v01_09_2days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,21S,27I,41T,54M,58I,71D,83T,91P,92V,96L,111P,120G,128D,148V,154K,169F,180D,183G,200S,203R,207A,208G,210S
OM824822	20355v01_10	Kenya	2010	20355v01_10_2days	genomic RNA		subtype: A1	1	231	6A,11I,14S,15L,21S,27I,41T,54M,58I,71D,83T,91P,92V,96L,111P,120G,128D,148V,154K,169F,180D,183G,200S,203R,207A,208G,210S
OM824873	20442v02_01	Kenya	2011	20442v02_01_6days	genomic RNA		subtype: A1	1	231	6L,14S,15L,27I,41T,50A,83L,87Q,91V,110S,120S,128D,148V,154K,178T,200S,203R,208Q,225S
OM824874	20442v02_02	Kenya	2011	20442v02_02_6days	genomic RNA		subtype: A1	1	231	6L,14S,15L,27I,41T,50A,83L,87Q,91V,110S,120S,128D,148V,154K,178T,200S,203R,208Q,225S
OM824875	20442v02_03	Kenya	2011	20442v02_03_6days	genomic RNA		subtype: A1	1	231	6L,14S,15L,23*,27I,41T,50A,83L,87Q,91V,110S,120S,128D,148V,154K,178T,200S,203R,208Q,225S
OM824876	20442v02_04	Kenya	2011	20442v02_04_6days	genomic RNA		subtype: A1	1	231	6L,14S,15L,27I,41T,50A,83L,87Q,91V,110S,120S,128D,148V,154K,178T,200S,203R,208Q,225S
OM824877	20442v02_05	Kenya	2011	20442v02_05_6days	genomic RNA		subtype: A1	1	231	6L,14S,15L,27I,41T,50A,83L,87Q,91V,110S,120S,128D,148V,154K,178T,200S,203R,208Q,225S
OM824878	20442v02_06	Kenya	2011	20442v02_06_6days	genomic RNA		subtype: A1	1	231	6L,14S,15L,27I,41T,50A,83L,87Q,91V,110S,120S,128D,148V,154K,178T,200S,203R,208Q,225S
OM824879	20442v02_07	Kenya	2011	20442v02_07_6days	genomic RNA		subtype: A1	1	231	6L,14S,15L,27I,41T,50A,83L,87Q,91V,92V,110S,120S,128D,148V,154K,178T,200S,203R,208Q,225S
OM824880	20442v02_08	Kenya	2011	20442v02_08_6days	genomic RNA		subtype: A1	1	231	6L,14S,15L,27I,41T,50A,83L,87Q,91V,110S,120S,128D,148V,154K,178T,200S,203R,208Q,225S
OM824881	20442v02_09	Kenya	2011	20442v02_09_6days	genomic RNA		subtype: A1	1	231	6L,14S,15L,27I,41T,50A,83L,87Q,91V,96I,110S,120S,128D,148V,154K,178T,200S,203R,208Q,225S
OM824882	20442v02_10	Kenya	2011	20442v02_10_6days	genomic RNA		subtype: A1	1	231	6L,14S,15L,27I,41T,50A,83L,87Q,91V,110S,120S,128D,148V,154K,178T,200S,203R,208Q,225S
OM824983	20573v0A_02	Kenya	2011	20573v0A_02_0days	genomic RNA		subtype: A1	1	231	6A,11I,12Y,14V,15M,27I,30R,54M,58I,71D,83L,86A,87Q,91V,96I,98D,111P,116A,120A,128D,148V,154K,169F,171A,178T,180D,183G,200S,207T,208G,210S
OM824984	20573v0A_03	Kenya	2011	20573v0A_03_0days	genomic RNA		subtype: A1	1	231	6A,11I,12Y,14V,15M,27I,30R,54M,58I,71D,83L,86A,87Q,91V,96I,98D,111P,116A,120A,128D,148V,154K,169F,171A,178T,180D,183G,200S,207T,208G,210S
OM824985	20573v0A_04	Kenya	2011	20573v0A_04_0days	genomic RNA		subtype: A1	1	231	6A,11I,12Y,14V,15M,27I,30R,54M,58I,71D,83L,86A,87Q,91V,96I,98D,111P,116A,120A,128D,148V,154K,169F,171A,178T,180D,183G,200S,207T,208G,210S
OM824986	20573v0A_05	Kenya	2011	20573v0A_05_0days	genomic RNA		subtype: A1	1	231	6A,11I,12Y,14V,15M,27I,30R,54M,58I,71D,83L,86A,87Q,91V,96I,98D,111P,116A,120A,128D,148V,154K,169F,171A,178T,180D,183G,200S,207T,208G,210S
OM824987	20573v0A_06	Kenya	2011	20573v0A_06_0days	genomic RNA		subtype: A1	1	231	6A,11I,12Y,14V,15M,27I,30R,54M,58I,71D,83L,86A,87Q,91V,96I,98D,111P,116A,120A,128D,148V,154K,169F,171A,178T,180D,183G,200S,207T,208G,210S
OM824988	20573v0A_07	Kenya	2011	20573v0A_07_0days	genomic RNA		subtype: A1	1	231	6A,11I,12Y,14V,15M,27I,30R,54M,58I,71D,83L,86A,87Q,91V,96I,98D,111P,116A,120A,128D,148V,154K,169F,171A,178T,180D,183G,200S,207T,208G,210S
OM824989	20573v0A_08	Kenya	2011	20573v0A_08_0days	genomic RNA		subtype: A1	1	231	6A,11I,12Y,14V,15M,21DN,27I,30R,54M,58I,71D,83L,86A,87Q,91V,96I,98D,111P,116A,120A,128D,148V,154K,169F,171A,178T,180D,183G,200S,207T,208G,210S
OM824990	20573v0A_09	Kenya	2011	20573v0A_09_0days	genomic RNA		subtype: A1	1	231	6A,11I,12Y,14V,15M,27I,30R,54M,58I,71D,83L,86A,87Q,91V,96I,98D,111P,116A,120A,128D,148V,154K,169F,171A,178T,180D,183G,200S,207T,208G,210S
OM824991	20573v0A_10	Kenya	2011	20573v0A_10_0days	genomic RNA		subtype: A1	1	231	6A,11I,12Y,14V,15M,27I,30R,54M,58I,71D,83L,86A,87Q,91V,96I,98D,111P,116A,120A,128D,148V,154K,169F,171A,178T,180D,183G,200S,207T,208G,210S
OM824992	20573v0A_11	Kenya	2011	20573v0A_11_0days	genomic RNA		subtype: A1	1	231	6A,11I,12Y,14V,15M,27I,30R,54M,58I,71D,83L,86A,87Q,91V,96I,98D,111P,116A,120A,128D,148V,154K,169F,171A,178T,180D,183G,200S,207T,208G,210S
OM824993	20608v01_01	Kenya	2012	20608v01_01_2days	genomic RNA		subtype: A1	1	231	6A,11I,14T,15L,27I,50H,54M,58I,71D,83L,92P,108S,111P,120S,128D,148V,154K,169F,171A,178T,180D,203R,204G,207A,208G,225S
OM824994	20608v01_02	Kenya	2012	20608v01_02_2days	genomic RNA		subtype: A1	1	231	6A,11I,14T,15L,27I,50H,54M,58I,71D,83L,92P,108S,111P,120S,128D,148V,154K,169F,171A,178T,180D,203R,204G,207A,208G,225S
OM824995	20608v01_03	Kenya	2012	20608v01_03_2days	genomic RNA		subtype: A1	1	231	6A,11I,14T,15L,27I,50H,54M,58I,71D,83L,92P,108S,111P,120S,128D,148V,154K,169F,171A,178T,180D,203R,204G,207A,208G,225S
OM824996	20608v01_04	Kenya	2012	20608v01_04_2days	genomic RNA		subtype: A1	1	231	6A,11I,14T,15L,27I,50H,54M,58I,71D,83L,92P,108S,111P,120S,128D,148V,154K,169F,171A,178T,180D,203R,204G,207A,208G,225S
OM824997	20608v01_05	Kenya	2012	20608v01_05_2days	genomic RNA		subtype: A1	1	231	6A,11I,14T,15L,27I,50H,54M,58I,71D,83L,92P,108S,111P,120S,128D,148V,154K,169F,171A,178T,180D,203R,204G,207A,208G,225S
OM824998	20608v01_06	Kenya	2012	20608v01_06_2days	genomic RNA		subtype: A1	1	231	6A,11I,14T,15L,27I,50H,54M,58I,71D,83L,92P,108S,111P,120S,128D,148V,154K,169F,171A,178T,180D,203R,204G,207A,208G,225S
OM824999	20608v01_08	Kenya	2012	20608v01_08_2days	genomic RNA		subtype: A1	1	231	6A,11I,14T,15L,27I,50H,54M,58I,71D,83L,92P,108S,111P,120S,128D,148V,154K,169F,171A,178T,180D,203R,204G,207A,208G,225S
OM825000	20608v01_10	Kenya	2012	20608v01_10_2days	genomic RNA		subtype: A1	1	231	6A,11I,14T,15L,27I,50H,54M,58I,71D,83L,92P,108S,111P,120S,128D,148V,154K,169F,171A,178T,180D,203R,204G,207A,208G,225S
OM825001	20608v01_11	Kenya	2012	20608v01_11_2days	genomic RNA		subtype: A1	1	231	6A,11I,14T,15L,27I,50H,54M,58I,71D,83L,92P,108S,111P,120S,128D,148V,154K,169F,171A,178T,180D,203R,204G,207A,208G,225S
OM825002	20608v01_12	Kenya	2012	20608v01_12_2days	genomic RNA		subtype: A1	1	231	6A,11I,14T,15L,27I,50H,54M,58I,71D,83L,92P,108S,111P,120S,128D,148V,154K,169F,171A,178T,180D,203R,204G,207A,208G,225S
OM825003	20631v03_01	Kenya	2011	20631v03_01_9days	genomic RNA		subtype: D	1	231	6A,12L,14T,15L,27I,54M,58I,71D,83L,92P,111P,115L,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
OM825004	20631v03_04	Kenya	2011	20631v03_04_9days	genomic RNA		subtype: D	1	231	6A,12L,14T,15L,27I,54M,58I,71D,83L,92P,111P,115L,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G,209V
OM825005	20631v03_05	Kenya	2011	20631v03_05_9days	genomic RNA		subtype: D	1	231	6A,12L,14T,15L,27I,54M,58I,71D,83L,92P,111P,115L,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
OM825006	20631v03_06	Kenya	2011	20631v03_06_9days	genomic RNA		subtype: D	1	231	6A,12L,14T,15L,27I,54M,58I,71D,83L,92P,111P,115L,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
OM825007	20631v03_08	Kenya	2011	20631v03_08_9days	genomic RNA		subtype: D	1	231	6A,12L,14T,15L,27I,54M,58I,71D,83L,92P,111P,115L,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
OM825008	20631v03_09	Kenya	2011	20631v03_09_9days	genomic RNA		subtype: D	1	231	6A,12L,14T,15L,27I,54M,58I,71D,83L,92P,111P,115L,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
OM825009	20631v03_10	Kenya	2011	20631v03_10_9days	genomic RNA		subtype: D	1	231	6A,12L,14T,15L,27I,54M,58I,71D,83L,92P,111P,115L,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
OM825010	20631v03_11	Kenya	2011	20631v03_11_9days	genomic RNA		subtype: D	1	231	6A,12L,14T,15L,27I,54M,58I,71D,83L,92P,111P,115L,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
OM825011	20631v03_13	Kenya	2011	20631v03_13_9days	genomic RNA		subtype: D	1	231	6A,12L,14T,15L,27I,54M,58I,71D,83L,92P,111P,115L,120S,128D,136LP,148V,154K,169F,178T,180D,200S,203R,207T,208G
OM825012	20631v03_15	Kenya	2011	20631v03_15_9days	genomic RNA		subtype: D	1	231	6A,12L,14T,15L,27I,54M,58I,71D,83L,92P,111P,115L,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
OM825063	20810v01_02	Kenya	2012	20810v01_02_6days	genomic RNA		subtype: A1	1	231	6A,13S,14P,45D,54M,58I,71D,92P,120S,128D,139D,148V,154K,169F,171V,178T,183G,187D,200S,203R,208G,225S
OM825064	20810v01_03	Kenya	2012	20810v01_03_6days	genomic RNA		subtype: A1	1	231	6A,13S,14P,45D,54M,58I,71D,92P,120S,128D,148V,154K,169F,171V,178T,183G,187D,200S,203R,208G,225S
OM825065	20810v01_04	Kenya	2012	20810v01_04_6days	genomic RNA		subtype: A1	1	231	6A,13S,14P,45D,54M,58I,71D,92P,120S,128D,148V,154K,169F,171V,178T,183G,187D,200S,203R,208G,225S
OM825066	20810v01_05	Kenya	2012	20810v01_05_6days	genomic RNA		subtype: A1	1	231	6A,13S,14P,45D,54M,58I,71D,92P,120S,128D,148V,154K,169F,171V,178T,183G,187D,200S,203R,208G,225S
OM825067	20810v01_06	Kenya	2012	20810v01_06_6days	genomic RNA		subtype: A1	1	231	6A,13S,14P,45D,54M,58I,71D,92P,120S,128D,148V,154K,169F,171V,178T,183G,187D,200S,203R,208G,225S
OM825068	20810v01_07	Kenya	2012	20810v01_07_6days	genomic RNA		subtype: A1	1	231	6A,13S,14P,45D,54M,58I,71D,92P,120S,128D,148V,154K,169F,171V,178T,183G,187D,200S,203R,208G,225S
OM825069	20810v01_08	Kenya	2012	20810v01_08_6days	genomic RNA		subtype: A1	1	231	6A,13S,14P,45D,54M,58I,71D,81G,92P,120S,128D,148V,154K,169F,171V,178T,183G,187D,200S,203R,208G,225S
OM825070	20810v01_09	Kenya	2012	20810v01_09_6days	genomic RNA		subtype: A1	1	231	6A,13S,14P,45D,54M,58I,71D,92P,120S,128D,148V,154K,169F,171V,178T,183G,187D,200S,203R,208G,225S
OM825071	20810v01_10	Kenya	2012	20810v01_10_6days	genomic RNA		subtype: A1	1	231	6A,13S,14P,45D,54M,58I,71D,92P,120S,128D,148V,154K,169F,171V,178T,183G,187D,200S,203R,208G,225S
OM825072	20810v01_11	Kenya	2012	20810v01_11_6days	genomic RNA		subtype: A1	1	231	6A,13S,14P,45D,54M,58I,71D,92P,120S,128D,148V,154K,169F,171V,178T,183G,187D,200S,203R,208G,225S
OM825084	20864v02_01	Kenya	2012	20864v02_01_7days	genomic RNA		subtype: A1	1	231	6A,11A,15L,27I,30R,31G,48I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G
OM825085	20864v02_02	Kenya	2012	20864v02_02_7days	genomic RNA		subtype: A1	1	231	6A,11A,15L,27I,30R,31G,48I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G
OM825086	20864v02_04	Kenya	2012	20864v02_04_7days	genomic RNA		subtype: A1	1	231	6A,11A,15L,27I,30R,31G,48I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G
OM825087	20864v02_05	Kenya	2012	20864v02_05_7days	genomic RNA		subtype: A1	1	231	6A,11A,15L,27I,30R,31G,48I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G
OM825088	20864v02_06	Kenya	2012	20864v02_06_7days	genomic RNA		subtype: A1	1	231	6A,11A,15L,27I,30R,31G,48I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G
OM825089	20864v02_07	Kenya	2012	20864v02_07_7days	genomic RNA		subtype: A1	1	231	6A,11A,15L,27I,30R,31G,48I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G
OM825090	20864v02_08	Kenya	2012	20864v02_08_7days	genomic RNA		subtype: A1	1	231	6A,11A,15L,27I,30R,31G,48I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G
OM825091	20864v02_09	Kenya	2012	20864v02_09_7days	genomic RNA		subtype: A1	1	231	6A,11A,15L,27I,30R,31G,48I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G
OM825092	20864v02_10	Kenya	2012	20864v02_10_7days	genomic RNA		subtype: A1	1	231	6A,11A,15L,27I,30R,31G,48I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G
OM825093	20864v02_11	Kenya	2012	20864v02_11_7days	genomic RNA		subtype: A1	1	231	6A,11A,15L,27I,30R,31G,48I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,180G,187D,200S,203R,208G
OM825094	20920v0A_01	Kenya	2013	20920v0A_01_0days	genomic RNA		subtype: D	1	231	6A,71D,83L,92P,107S,116A,120G,124T,132Q,136M,148V,169F,180D,187D,203R,208G,225S
OM825095	20920v0A_02	Kenya	2013	20920v0A_02_0days	genomic RNA		subtype: D	1	231	6A,71D,83L,92P,107S,116A,120G,124T,132Q,136M,148V,169F,180D,187D,203R,208G,225S
OM825096	20920v0A_03	Kenya	2013	20920v0A_03_0days	genomic RNA		subtype: D	1	231	6A,71D,83L,92P,107S,116A,120G,124T,132Q,136M,148V,169F,180D,187D,203R,208G,225S
OM825097	20920v0A_04	Kenya	2013	20920v0A_04_0days	genomic RNA		subtype: D	1	231	6A,71D,83L,92P,107S,116A,120G,124T,132Q,136M,148V,169F,180D,187D,203R,208G,225S
OM825098	20920v0A_05	Kenya	2013	20920v0A_05_0days	genomic RNA		subtype: D	1	231	6A,71D,83L,92P,107S,116A,120G,124T,132Q,136M,148V,169F,180D,187D,203R,208G,225S
OM825099	20920v0A_11	Kenya	2013	20920v0A_11_0days	genomic RNA		subtype: D	1	231	6A,71D,83L,92P,107S,116A,120G,124T,132Q,136M,148V,169F,180D,187D,203R,208G,225S
OM825100	20920v0A_12	Kenya	2013	20920v0A_12_0days	genomic RNA		subtype: D	1	231	6A,71D,83L,92P,107S,116A,120G,124T,132Q,136M,148V,169F,180D,187D,203R,208G,225S
OM825101	20920v0A_15	Kenya	2013	20920v0A_15_0days	genomic RNA		subtype: D	1	231	6A,71D,83L,92P,107S,116A,120G,124T,132Q,136M,148V,169F,180D,187D,203R,208G,225S
OM825102	20920v0A_17	Kenya	2013	20920v0A_17_0days	genomic RNA		subtype: D	1	231	6A,71D,83L,92P,107S,116A,120G,124T,132Q,136M,148V,169F,180D,187D,203R,208G,225S
OM825103	20920v0A_18	Kenya	2013	20920v0A_18_0days	genomic RNA		subtype: D	1	231	6A,71D,83L,92P,107S,116A,120G,124T,132Q,136M,148V,169F,180D,187D,203R,208G,225S
OM825104	20941v02_01	Kenya	2014	20941v02_01_7days	genomic RNA		subtype: D	1	231	6P,12Y,14S,15L,27I,87Q,96I,116T,148V,180D,208G,225S
OM825105	20941v02_04	Kenya	2014	20941v02_04_7days	genomic RNA		subtype: D	1	231	5DN,6P,12Y,14S,15L,27I,87Q,96I,116T,148V,180D,208G,225S
OM825106	20941v02_07	Kenya	2014	20941v02_07_7days	genomic RNA		subtype: D	1	231	6P,12Y,14S,15L,27I,87Q,96I,116T,148V,180D,208G,225S
OM825107	20941v02_08	Kenya	2014	20941v02_08_7days	genomic RNA		subtype: D	1	231	6P,12Y,14S,15L,27I,87Q,96I,116T,148V,180D,208G,225S
OM825108	20941v02_10	Kenya	2014	20941v02_10_7days	genomic RNA		subtype: D	1	231	6P,12Y,14S,15L,27I,87Q,96I,116T,148V,180D,208G,225S
OM825109	20941v02_11	Kenya	2014	20941v02_11_7days	genomic RNA		subtype: D	1	231	6P,12Y,14S,15L,27I,87Q,96I,116T,129V,148V,180D,208G,225S
OM825110	20941v02_12	Kenya	2014	20941v02_12_7days	genomic RNA		subtype: D	1	231	6P,12Y,14S,15L,27I,77T,87Q,96I,116T,148V,180D,208G,225S
OM825111	20941v02_13	Kenya	2014	20941v02_13_7days	genomic RNA		subtype: D	1	231	6P,12Y,14S,15L,27I,87Q,96I,116T,148V,180D,208G,225S
OM825112	20941v02_15	Kenya	2014	20941v02_15_7days	genomic RNA		subtype: D	1	231	6P,12Y,14S,15L,27I,87Q,96I,116T,148V,180D,208G,225S
OM825113	20941v02_16	Kenya	2014	20941v02_16_7days	genomic RNA		subtype: D	1	231	6P,12Y,14S,15L,27I,87Q,96I,116T,148V,180D,208G,225S
OM825114	21006v01_01	Kenya	2014	21006v01_01_2days	genomic RNA		subtype: A1/D	1	231	6L,14P,15L,27I,83L,110N,112T,116Q,120S,148V,180D,225S
OM825115	21006v01_02	Kenya	2014	21006v01_02_2days	genomic RNA		subtype: A1/D	1	231	6L,14P,15L,27I,83L,110N,112T,116Q,120S,148V,180D,225S
OM825116	21006v01_03	Kenya	2014	21006v01_03_2days	genomic RNA		subtype: A1/D	1	231	6L,14P,15L,27I,83L,110N,112T,116Q,120S,148V,180D,225S
OM825117	21006v01_04	Kenya	2014	21006v01_04_2days	genomic RNA		subtype: A1/D	1	231	6L,14P,15L,27I,83L,110N,112T,116Q,120S,148V,180D,225S
OM825118	21006v01_05	Kenya	2014	21006v01_05_2days	genomic RNA		subtype: A1/D	1	231	6L,14P,15L,27I,83L,110N,112T,116Q,120S,148V,180D,225S
OM825119	21006v01_06	Kenya	2014	21006v01_06_2days	genomic RNA		subtype: A1/D	1	231	6L,14P,15L,27I,83L,110N,112T,116Q,120S,148V,180D,225S
OM825120	21006v01_07	Kenya	2014	21006v01_07_2days	genomic RNA		subtype: A1/D	1	231	6L,14P,15L,27I,83L,110N,112T,116Q,120S,148V,180D,225S
OM825121	21006v01_08	Kenya	2014	21006v01_08_2days	genomic RNA		subtype: A1/D	1	231	6L,14P,15L,27I,83L,110N,112T,116Q,120S,148V,180D,225S
OM825122	21006v01_09	Kenya	2014	21006v01_09_2days	genomic RNA		subtype: A1/D	1	231	6L,14P,15L,27I,83L,110N,112T,116Q,120S,148V,180D,225S
OM825123	21006v01_10	Kenya	2014	21006v01_10_2days	genomic RNA		subtype: A1/D	1	231	6L,14P,15L,27I,83L,110N,112T,116Q,120S,148V,180D,225S
OM825576	30243v02_02	Tanzania	2010	30243v02_02_18days	genomic RNA		subtype: C	1	231	6L,14S,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177T,178T,187D,203R,208G,225S
OM825577	30243v02_03	Tanzania	2010	30243v02_03_18days	genomic RNA		subtype: C	1	231	6L,14S,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177T,178T,187D,203R,208G,225S
OM825578	30243v02_04	Tanzania	2010	30243v02_04_18days	genomic RNA		subtype: C	1	231	6L,14S,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177T,178T,187D,203R,208G,225S
OM825579	30243v02_05	Tanzania	2010	30243v02_05_18days	genomic RNA		subtype: C	1	231	6L,14S,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177T,178T,187D,203R,208G,225S
OM825580	30243v02_06	Tanzania	2010	30243v02_06_18days	genomic RNA		subtype: C	1	231	6L,14S,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177T,178T,187D,203R,208G,225S
OM825581	30243v02_07	Tanzania	2010	30243v02_07_18days	genomic RNA		subtype: C	1	231	6L,14S,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177T,178T,187D,203R,208G,225S
OM825582	30243v02_08	Tanzania	2010	30243v02_08_18days	genomic RNA		subtype: C	1	231	6L,14S,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177T,178T,187D,203R,208G,225S
OM825583	30243v02_09	Tanzania	2010	30243v02_09_18days	genomic RNA		subtype: C	1	231	6L,14S,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177T,178T,187D,203R,208G,225S
OM825584	30243v02_10	Tanzania	2010	30243v02_10_18days	genomic RNA		subtype: C	1	231	6L,14S,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177T,178T,187D,203R,208G,225S
OM825585	30243v02_11	Tanzania	2010	30243v02_11_18days	genomic RNA		subtype: C	1	231	6L,14S,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177T,178T,187D,203R,208G,225S
OM825586	30389v11_01	Tanzania	2012	30389v11_01_16days	genomic RNA		subtype: C	1	231	6L,14P,27I,41T,71D,83L,87Q,91V,96V,116A,128D,148V,154K,169F,171A,178T,180D,187D,200S,225S
OM825587	30389v11_02	Tanzania	2012	30389v11_02_16days	genomic RNA		subtype: C	1	231	6L,14P,27I,41T,71D,83L,87Q,91V,96V,116A,128D,148V,154K,169F,171A,178T,180D,187D,200S,225S
OM825588	30389v11_03	Tanzania	2012	30389v11_03_16days	genomic RNA		subtype: C	1	231	6L,14P,27I,41T,71D,83L,87Q,91V,96V,116A,128D,148V,154K,169F,171A,178T,180D,187D,200S,225S
OM825589	30389v11_04	Tanzania	2012	30389v11_04_16days	genomic RNA		subtype: C	1	231	6L,14P,27I,41T,71D,83L,87Q,91V,96V,116A,128D,148V,154K,169F,171A,178T,180D,187D,200S,225S
OM825590	30389v11_05	Tanzania	2012	30389v11_05_16days	genomic RNA		subtype: C	1	231	6L,14P,27I,41T,71D,83L,87Q,91V,96V,116A,128D,148V,154K,169F,171A,178T,180D,187D,200S,225S
OM825591	30389v11_06	Tanzania	2012	30389v11_06_16days	genomic RNA		subtype: C	1	231	6L,14P,27I,41T,71D,83L,87Q,91V,96V,116A,128D,148V,154K,169F,171A,178T,180D,187D,200S,225S
OM825592	30389v11_07	Tanzania	2012	30389v11_07_16days	genomic RNA		subtype: C	1	231	6L,14P,27I,41T,71D,83L,87Q,91V,96V,116A,128D,148V,154K,169F,171A,178T,180D,187D,200S,225S
OM825593	30389v11_08	Tanzania	2012	30389v11_08_16days	genomic RNA		subtype: C	1	231	6L,14P,27I,41T,71D,83L,87Q,91V,96V,116A,128D,148V,154K,169F,171A,178T,180D,187D,200S,225S
OM825594	30389v11_09	Tanzania	2012	30389v11_09_16days	genomic RNA		subtype: C	1	231	6L,14P,27I,41T,71D,83L,87Q,91V,96V,116A,128D,148V,154K,169F,171A,178T,180D,187D,200S,225S
OM825595	30389v11_10	Tanzania	2012	30389v11_10_16days	genomic RNA		subtype: C	1	231	6L,14P,27I,41T,71D,83L,87Q,91V,96V,116A,128D,148V,154K,169F,171A,178T,180D,187D,200S,225S
OM825596	30418v01_01	Tanzania	2012	30418v01_01_2days	genomic RNA		subtype: C	1	231	6A,11T,12Y,14S,15L,27I,41T,50T,71D,75D,83L,116A,120S,128D,148V,154K,169F,178T,180D,203R,207A,208G
OM825597	30418v01_02	Tanzania	2012	30418v01_02_2days	genomic RNA		subtype: C	1	231	6A,11T,12Y,14S,15L,27I,41T,50T,71D,75D,83L,116A,120S,128D,148V,154K,169F,178T,180D,203R,207A,208G
OM825598	30418v01_04	Tanzania	2012	30418v01_04_2days	genomic RNA		subtype: C	1	231	6A,11T,12Y,14S,15L,27I,41T,50T,71D,75D,83L,116A,120S,128D,148V,154K,169F,178T,180D,203R,207A,208G
OM825599	30418v01_05	Tanzania	2012	30418v01_05_2days	genomic RNA		subtype: C	1	231	6A,11T,12Y,14S,15L,27I,41T,50T,71D,75D,83L,116A,120S,128D,148V,154K,169F,178T,180D,203R,207A,208G
OM825600	30418v01_06	Tanzania	2012	30418v01_06_2days	genomic RNA		subtype: C	1	231	6A,11T,12Y,14S,15L,27I,41T,50T,71D,75D,83L,116A,120S,128D,148V,154K,169F,178T,180D,203R,207A,208G
OM825601	30418v01_07	Tanzania	2012	30418v01_07_2days	genomic RNA		subtype: C	1	231	6A,11T,12Y,14S,15L,27I,41T,50T,71D,75D,83L,116A,120S,128D,148V,154K,169F,178T,180D,203R,207A,208G
OM825602	30418v01_08	Tanzania	2012	30418v01_08_2days	genomic RNA		subtype: C	1	231	6A,11T,12Y,14S,15L,27I,41T,50T,71D,75D,83L,116A,120S,128D,148V,154K,169F,178T,180D,203R,207A,208G
OM825603	30418v01_09	Tanzania	2012	30418v01_09_2days	genomic RNA		subtype: C	1	231	6A,11T,12Y,14S,15L,27I,41T,50T,71D,75D,83L,116A,120S,128D,148V,154K,169F,178T,180D,203R,207A,208G
OM825604	30418v01_10	Tanzania	2012	30418v01_10_2days	genomic RNA		subtype: C	1	231	6A,11T,12Y,14S,15L,27I,41T,50T,71D,74NS,75D,83L,116A,120S,128DN,148V,154K,169F,178T,180D,203R,207A,208G
OM825605	30418v01_12	Tanzania	2012	30418v01_12_2days	genomic RNA		subtype: C	1	231	6A,11T,12Y,14S,15L,27I,41T,50T,71D,75D,83L,116A,120S,128D,148V,154K,169F,178T,180D,203R,207A,208G
OM825636	30507v02_01	Tanzania	2011	30507v02_01_6days	genomic RNA		subtype: A1	1	231	6A,11T,14S,15L,27I,54M,58I,71D,83L,86P,87Q,91V,92P,95G,96I,98D,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,200S,203R,204S,208G,225S
OM825637	30507v02_02	Tanzania	2011	30507v02_02_6days	genomic RNA		subtype: A1	1	231	6A,11T,14S,15L,27I,54M,58I,71D,83L,86P,87Q,91V,92P,95G,96I,98D,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,200S,203R,204S,208G,225S
OM825638	30507v02_04	Tanzania	2011	30507v02_04_6days	genomic RNA		subtype: A1	1	231	6A,11T,14S,15L,27I,54M,58I,71D,83L,86P,87Q,91V,92P,95G,96I,98D,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,200S,203R,204S,208G,225S
OM825639	30507v02_05	Tanzania	2011	30507v02_05_6days	genomic RNA		subtype: A1	1	231	6A,11T,14S,15L,27I,54M,58I,71D,83L,86P,87Q,91V,92P,95G,96I,98D,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,200S,203R,204S,208G,225S
OM825640	30507v02_07	Tanzania	2011	30507v02_07_6days	genomic RNA		subtype: A1	1	231	6A,11T,14S,15L,27I,54M,58I,71D,83L,86P,87Q,91V,92P,95G,96I,98D,111P,116R,120S,128D,146NS,148V,153V,154K,169F,171I,178T,200S,203R,204S,208G,225S
OM825641	30507v02_08	Tanzania	2011	30507v02_08_6days	genomic RNA		subtype: A1	1	231	6A,11T,14S,15L,27I,54M,58I,71D,83L,86P,87Q,91V,92P,95G,96I,98D,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,200S,203R,204S,208G,225S
OM825642	30507v02_09	Tanzania	2011	30507v02_09_6days	genomic RNA		subtype: A1	1	231	6A,11T,14S,15L,27I,54M,58I,71D,83L,86P,87Q,91V,92P,95G,96I,98D,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,200S,203R,204S,208G,225S
OM825643	30507v02_10	Tanzania	2011	30507v02_10_6days	genomic RNA		subtype: A1	1	231	6A,11T,14S,15L,27I,54M,58I,71D,83L,86P,87Q,91V,92P,95G,96I,98D,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,200S,203R,204S,208G,225S
OM825644	30507v02_12	Tanzania	2011	30507v02_12_6days	genomic RNA		subtype: A1	1	231	6A,11T,14S,15L,27I,54M,58I,71D,83L,86P,87Q,91V,92P,95G,96I,98D,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,200S,203R,204S,208G,225S
OM825645	30507v02_13	Tanzania	2011	30507v02_13_6days	genomic RNA		subtype: A1	1	231	6A,11T,14S,15L,27I,54M,58I,71D,83L,86P,87Q,91V,92P,95G,96I,98D,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,200S,203R,204S,208G,225S
OM825646	30507v14_01	Tanzania	2012	30507v14_01_171days	genomic RNA		subtype: A1	1	231	6A,11A,14S,15L,27I,54M,58I,71D,83L,86P,87Q,91V,92P,95G,96I,98D,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,200S,203R,204S,208G
OM825647	30507v14_02	Tanzania	2012	30507v14_02_171days	genomic RNA		subtype: A1	1	231	6A,11A,14S,15L,27I,54M,58I,71D,83L,86P,87Q,91V,92P,95G,96I,98D,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,200S,203R,204S,208G
OM825648	30507v14_03	Tanzania	2012	30507v14_03_171days	genomic RNA		subtype: A1	1	231	6A,11A,14S,15L,27I,54M,58I,71D,83L,86P,87Q,91V,92P,95G,96I,98D,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,200S,203R,204S,208G
OM825650	30507v14_05	Tanzania	2012	30507v14_05_171days	genomic RNA		subtype: A1	1	231	6A,11A,14S,15L,27I,54M,58I,71D,83L,86P,87Q,91V,92P,95G,96I,98D,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,200S,203R,204S,208G
OM825651	30507v14_07	Tanzania	2012	30507v14_07_171days	genomic RNA		subtype: A1	1	231	6A,11A,14S,15L,27I,54M,58I,71D,83L,86P,87Q,91V,92P,95G,96I,98D,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,200S,203R,204S,208G
OM825652	30507v14_08	Tanzania	2012	30507v14_08_171days	genomic RNA		subtype: A1	1	231	6A,11A,14S,15L,27I,54M,58I,71D,83L,86P,87Q,91V,92P,95G,96I,98D,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,200S,203R,204S,208G
OM825653	30507v14_09	Tanzania	2012	30507v14_09_171days	genomic RNA		subtype: A1	1	231	6A,11A,14S,15L,27I,54M,58I,71D,83L,86P,87Q,91V,92P,95G,96I,98D,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,200S,203R,204S,208G
OM825654	30507v14_10	Tanzania	2012	30507v14_10_171days	genomic RNA		subtype: A1	1	231	6A,11A,14S,15L,27I,54M,58I,71D,83L,86P,87Q,91V,92P,95G,96I,98D,111P,116R,120S,128D,148V,153V,154K,169F,171I,177AV,178T,200S,203R,204S,208G
OM825655	30507v14_11	Tanzania	2012	30507v14_11_171days	genomic RNA		subtype: A1	1	231	6A,11A,14S,15L,27I,54M,58I,71D,83L,86P,87Q,91V,92P,95G,96I,98D,111P,116R,120S,128D,148V,153V,154K,169F,171I,178T,200S,203R,204S,208G
OM825656	30585v01_01	Tanzania	2011	30585v01_01_29days	genomic RNA		subtype: C	1	231	6L,15L,27I,41T,71D,83L,87Q,91V,96V,116A,148V,154K,169F,178T,187D,203R,208G
OM825657	30585v01_02	Tanzania	2011	30585v01_02_29days	genomic RNA		subtype: C	1	231	6L,15L,27I,41T,71D,83L,87Q,91V,96V,116A,148V,154K,169F,178T,187D,203R,208G,214MT
OM825658	30585v01_03	Tanzania	2011	30585v01_03_29days	genomic RNA		subtype: C	1	231	6L,15L,27I,41T,71D,83L,87Q,91V,96V,116A,148V,154K,169F,178T,187D,203R,208G
OM825659	30585v01_05	Tanzania	2011	30585v01_05_29days	genomic RNA		subtype: C	1	231	6L,15L,27I,41T,71D,83L,87Q,91V,96V,116A,148V,154K,169F,178T,187D,203R,208G
OM825660	30585v01_06	Tanzania	2011	30585v01_06_29days	genomic RNA		subtype: C	1	231	6L,15L,27I,41T,71D,83L,87Q,91V,96V,116A,148V,154K,169F,178T,187D,203R,208G
OM825661	30585v01_08	Tanzania	2011	30585v01_08_29days	genomic RNA		subtype: C	1	231	6L,15L,27I,41T,54AT,71D,83L,87Q,90S,91V,96V,116A,148V,154K,169F,178T,187D,203R,208G
OM825662	30585v01_09	Tanzania	2011	30585v01_09_29days	genomic RNA		subtype: C	1	231	6L,15L,27I,41T,71D,83L,87Q,91V,96V,116A,126LV,148V,154K,169F,178T,187D,203R,208G
OM825663	30585v01_10	Tanzania	2011	30585v01_10_29days	genomic RNA		subtype: C	1	231	6L,15L,27I,41T,71D,83L,87Q,91V,96V,116A,148V,154K,169F,178T,187D,203R,208G
OM825664	30585v01_11	Tanzania	2011	30585v01_11_29days	genomic RNA		subtype: C	1	231	6L,15L,27I,41T,71D,83L,87Q,91V,96V,116A,148V,154K,169F,178T,187D,203R,208G
OM825665	30585v01_12	Tanzania	2011	30585v01_12_29days	genomic RNA		subtype: C	1	231	6L,15L,27I,41T,71D,83L,87Q,91V,96V,116A,148V,154K,169F,178T,187D,203R,208G
OM825666	30601v01_02	Tanzania	2012	30601v01_02_2days	genomic RNA		subtype: A1	1	231	6T,12Y,14S,15L,27I,83L,86A,87Q,91V,98D,120S,148V,178T,180D,203R
OM825667	30601v01_03	Tanzania	2012	30601v01_03_2days	genomic RNA		subtype: A1	1	231	6T,12Y,14S,15L,27I,83L,86A,87Q,91V,98D,120S,148V,178T,180D,203R
OM825668	30601v01_05	Tanzania	2012	30601v01_05_2days	genomic RNA		subtype: A1	1	231	6T,12Y,14S,15L,27I,83L,86A,87Q,91V,98D,120S,148V,178T,180D,203R
OM825669	30601v01_06	Tanzania	2012	30601v01_06_2days	genomic RNA		subtype: A1	1	231	6T,12Y,14S,15L,27I,83L,86A,87Q,91V,98D,120S,148V,178T,180D,203R
OM825670	30601v01_07	Tanzania	2012	30601v01_07_2days	genomic RNA		subtype: A1	1	231	6T,12Y,14S,15L,27I,83L,86A,87Q,91V,98D,120S,148V,178T,180D,203R
OM825671	30601v01_09	Tanzania	2012	30601v01_09_2days	genomic RNA		subtype: A1	1	231	6T,12Y,14S,15L,27I,83L,86A,87Q,91V,98D,120S,148V,178T,180D,203R
OM825672	30601v01_10	Tanzania	2012	30601v01_10_2days	genomic RNA		subtype: A1	1	231	6T,12Y,14S,15L,27I,83L,86A,87Q,91V,98D,120S,148V,178T,180D,203R
OM825673	30601v01_11	Tanzania	2012	30601v01_11_2days	genomic RNA		subtype: A1	1	231	6T,12Y,14S,15L,27I,83L,86A,87Q,91V,98D,120S,148V,178T,180D,203R
OM825674	30601v01_12	Tanzania	2012	30601v01_12_2days	genomic RNA		subtype: A1	1	231	6T,12Y,14S,15L,27I,83L,86A,87Q,91V,98D,120S,148V,178T,180D,203R
OM825675	30601v01_13	Tanzania	2012	30601v01_13_2days	genomic RNA		subtype: A1	1	231	6T,12Y,14S,15L,27I,83L,86A,87Q,91V,98D,120S,148V,178T,180D,203R
OM825686	30738v01_01	Tanzania	2012	30738v01_01_4days	genomic RNA		subtype: C	1	231	6L,14N,15L,27I,41T,71D,83T,87Q,91V,96L,98D,116T,120S,148V,169F,178T,180D,203R,208G,228V
OM825687	30738v01_02	Tanzania	2012	30738v01_02_4days	genomic RNA		subtype: C	1	231	6L,14N,15L,27I,41T,71D,83T,87Q,91V,96L,98D,116T,120S,148V,169F,178T,180D,203R,208G
OM825688	30738v01_03	Tanzania	2012	30738v01_03_4days	genomic RNA		subtype: C	1	231	6L,14N,15L,27I,41T,71D,83T,87Q,91V,96L,98D,116T,120S,148V,169F,178T,180D,203R,208G
OM825689	30738v01_04	Tanzania	2012	30738v01_04_4days	genomic RNA		subtype: C	1	231	6L,14N,15L,27I,41T,71D,83T,87Q,91V,96L,98D,116T,120S,148V,169F,178T,180D,203R,208G
OM825690	30738v01_05	Tanzania	2012	30738v01_05_4days	genomic RNA		subtype: C	1	231	6L,14N,15L,27I,41T,71D,83T,87Q,91V,96L,98D,116T,120S,148V,169F,178T,180D,203R,208G
OM825691	30738v01_06	Tanzania	2012	30738v01_06_4days	genomic RNA		subtype: C	1	231	6L,14N,15L,27I,41T,71D,83T,87Q,91V,96L,98D,116T,120S,148V,169F,178T,180D,203R,208G
OM825692	30738v01_07	Tanzania	2012	30738v01_07_4days	genomic RNA		subtype: C	1	231	6L,14N,15L,27I,41T,71D,83T,87Q,91V,96L,98D,116T,120S,148V,169F,178T,180D,203R,208G
OM825693	30738v01_08	Tanzania	2012	30738v01_08_4days	genomic RNA		subtype: C	1	231	6L,14N,15L,25R,27I,41T,71D,83T,87Q,91V,96L,98D,116T,120S,148V,169F,178T,180D,203R,208G
OM825694	30738v01_09	Tanzania	2012	30738v01_09_4days	genomic RNA		subtype: C	1	231	6L,14N,15L,27I,41T,71D,83T,87Q,91V,96L,98D,116T,120S,148V,169F,178T,180D,203R,208G
OM825695	30738v01_10	Tanzania	2012	30738v01_10_4days	genomic RNA		subtype: C	1	231	6L,14N,15L,27I,41T,71D,83T,87Q,91V,96L,98D,116T,120S,130C,148V,169F,178T,180D,188AT,203R,208G
OM825696	30782v0A_01	Tanzania	2011	30782v0A_01_0days	genomic RNA		subtype: C	1	231	6L,27I,41T,71D,83L,91V,116N,118I,120G,148V,154K,169F,178T,180D,187D,203R,208G,210S
OM825697	30782v0A_02	Tanzania	2011	30782v0A_02_0days	genomic RNA		subtype: C	1	231	6L,27I,41T,71D,83L,91V,116N,118I,120G,148V,154K,169F,178T,180D,186AT,187D,203R,208G,210S
OM825698	30782v0A_03	Tanzania	2011	30782v0A_03_0days	genomic RNA		subtype: C	1	231	6L,27I,41T,71D,83L,91V,116N,118I,120G,148V,154K,169F,178T,180D,187D,203R,208G,210S
OM825699	30782v0A_04	Tanzania	2011	30782v0A_04_0days	genomic RNA		subtype: C	1	231	6L,27I,41T,71D,83L,91V,116N,118I,120G,148V,154K,169F,178T,180D,187D,203R,208G,210S
OM825700	30782v0A_05	Tanzania	2011	30782v0A_05_0days	genomic RNA		subtype: C	1	231	6L,27I,41T,71D,83L,91V,116N,118I,120G,148V,154K,169F,178T,180D,187D,203R,208G,210S
OM825701	30782v0A_06	Tanzania	2011	30782v0A_06_0days	genomic RNA		subtype: C	1	231	6L,27I,41T,71D,83L,91V,116N,118I,120G,148V,154K,169F,178T,180D,187D,203R,208G,210S
OM825702	30782v0A_07	Tanzania	2011	30782v0A_07_0days	genomic RNA		subtype: C	1	231	6L,27I,41T,71D,83L,91V,116N,118I,120G,148V,154K,169F,178T,180D,187D,203R,208G,210S
OM825703	30782v0A_08	Tanzania	2011	30782v0A_08_0days	genomic RNA		subtype: C	1	231	6L,27I,41T,71D,83L,91V,116N,118I,120G,148V,154K,169F,178T,180D,187D,203R,208G,210S
OM825704	30782v0A_09	Tanzania	2011	30782v0A_09_0days	genomic RNA		subtype: C	1	231	6L,27I,41T,71D,83L,91V,116N,118I,120G,148V,154K,169F,178T,180D,187D,203R,208G,210S
OM825705	30782v0A_11	Tanzania	2011	30782v0A_11_0days	genomic RNA		subtype: C	1	231	6L,27I,41T,71D,83L,91V,116N,118I,120G,148V,154K,169F,178T,180D,187D,203R,208G,210S
OM825706	30859v01_03	Tanzania	2013	30859v01_03_3days	genomic RNA		subtype: A1/D	1	231	6A,11M,15L,26A,27I,30R,31G,48A,50S,54M,58I,83L,96V,110N,111I,115V,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
OM825707	30859v01_04	Tanzania	2013	30859v01_04_3days	genomic RNA		subtype: A1/D	1	231	6A,11M,15L,26A,27I,30R,31G,48A,50S,54M,58I,83L,96V,110N,111I,115V,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
OM825708	30859v01_06	Tanzania	2013	30859v01_06_3days	genomic RNA		subtype: A1/D	1	231	6A,11M,15L,26A,27I,30R,31G,48A,50S,54M,58I,83L,96V,110N,111I,115V,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
OM825709	30859v01_07	Tanzania	2013	30859v01_07_3days	genomic RNA		subtype: A1/D	1	231	6A,11M,15L,26A,27I,30R,31G,37IM,48A,50S,54M,58I,83L,96V,110N,111I,115V,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
OM825710	30859v01_11	Tanzania	2013	30859v01_11_3days	genomic RNA		subtype: A1/D	1	231	6A,11M,15L,26A,27I,30R,31G,48A,50S,54M,58I,83L,96V,110N,111I,115V,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
OM825711	30859v01_12	Tanzania	2013	30859v01_12_3days	genomic RNA		subtype: A1/D	1	231	6A,11M,15L,26A,27I,30R,31G,48A,50S,54M,58I,83L,96V,110N,111I,115V,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
OM825712	30859v01_13	Tanzania	2013	30859v01_13_3days	genomic RNA		subtype: A1/D	1	231	6A,11M,15L,26A,27I,30R,31G,48A,50S,54M,58I,83L,96V,110N,111I,115V,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
OM825713	30859v01_14	Tanzania	2013	30859v01_14_3days	genomic RNA		subtype: A1/D	1	231	6A,11M,15L,26A,27I,30R,31G,48A,50S,54M,58I,83L,96V,110N,111I,115V,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
OM825714	30859v01_18	Tanzania	2013	30859v01_18_3days	genomic RNA		subtype: A1/D	1	231	6A,11M,15L,26A,27I,30R,31G,48A,50S,54M,58I,83L,96V,110N,111I,115V,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
OM825715	30859v01_19	Tanzania	2013	30859v01_19_3days	genomic RNA		subtype: A1/D	1	231	6A,11M,15L,26A,27I,30R,31G,46R,48A,50S,54M,58I,83L,96V,110N,111I,115V,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G
OM825796	40067v0H_03	Thailand	2011	40067v0H_03_0days	genomic RNA		subtype: CRF01_AE/B	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,200S,207S,208G,225S
OM825797	40067v0H_06	Thailand	2011	40067v0H_06_0days	genomic RNA		subtype: CRF01_AE/B	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,178T,200S,207S,208G,225S
OM825798	40067v0H_07	Thailand	2011	40067v0H_07_0days	genomic RNA		subtype: CRF01_AE/B	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,200S,207S,208G,225S
OM825799	40067v0H_08	Thailand	2011	40067v0H_08_0days	genomic RNA		subtype: CRF01_AE/B	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,200S,207S,208G,225S
OM825800	40067v0H_09	Thailand	2011	40067v0H_09_0days	genomic RNA		subtype: CRF01_AE/B	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,200S,207S,208G,225S
OM825801	40067v0H_10	Thailand	2011	40067v0H_10_0days	genomic RNA		subtype: CRF01_AE/B	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,200S,207S,208G,225S
OM825802	40067v0H_11	Thailand	2011	40067v0H_11_0days	genomic RNA		subtype: CRF01_AE/B	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,200S,207S,208G,225S
OM825803	40067v0H_12	Thailand	2011	40067v0H_12_0days	genomic RNA		subtype: CRF01_AE/B	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,163DG,178T,200S,207S,208G,225S
OM825804	40067v0H_13	Thailand	2011	40067v0H_13_0days	genomic RNA		subtype: CRF01_AE/B	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,200S,207S,208G,225S
OM825805	40067v0H_14	Thailand	2011	40067v0H_14_0days	genomic RNA		subtype: CRF01_AE/B	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,200S,207S,208G,225S
OM825846	40096v01_01	Thailand	2011	40096v01_01_1days	genomic RNA		subtype: CRF01_AE	1	231	6A,11T,14S,15L,27I,31G,33N,54M,58I,71D,83T,91H,92P,110N,115V,116A,120S,148V,169F,178T,200A,207T,208G,225S
OM825847	40096v01_05	Thailand	2011	40096v01_05_1days	genomic RNA		subtype: CRF01_AE	1	231	6A,11T,14S,15L,27I,31G,33N,54M,58I,71D,83T,91H,92P,110N,115V,116A,120S,148V,169F,178T,200A,207T,208G,225S
OM825848	40096v01_06	Thailand	2011	40096v01_06_1days	genomic RNA		subtype: CRF01_AE	1	231	6A,11T,14S,15L,27I,31G,33N,54M,58I,71D,83T,91H,92P,110N,115V,116A,120S,148V,169F,178T,200A,207T,208G,225S
OM825849	40096v01_07	Thailand	2011	40096v01_07_1days	genomic RNA		subtype: CRF01_AE	1	231	6A,11T,14S,15L,27I,31G,33N,54M,58I,71D,83T,91H,92P,110N,115V,116A,120S,148V,169F,178T,200A,207T,208G,225S
OM825850	40096v01_08	Thailand	2011	40096v01_08_1days	genomic RNA		subtype: CRF01_AE	1	231	6A,11T,14S,15L,27I,31G,33N,54M,57NS,58I,71D,83T,91H,92P,110N,115V,116A,120S,148V,169F,178T,200A,207T,208G,225S
OM825851	40096v01_09	Thailand	2011	40096v01_09_1days	genomic RNA		subtype: CRF01_AE	1	231	6A,11T,14S,15L,27I,31G,33N,54M,58I,71D,83T,91H,92P,110N,115V,116A,120S,148V,169F,178T,200S,207T,208G
OM825852	40096v01_10	Thailand	2011	40096v01_10_1days	genomic RNA		subtype: CRF01_AE	1	231	6A,11T,14S,15L,27I,31G,33N,54M,58I,71D,83T,91H,92P,110N,115V,116A,120S,148V,169F,178T,200S,207T,208G
OM825853	40096v01_11	Thailand	2011	40096v01_11_1days	genomic RNA		subtype: CRF01_AE	1	231	6A,11T,14S,15L,27I,31G,33N,54M,58I,71D,83T,91H,92P,110N,115V,116A,120S,148V,169F,178T,180G,200A,207T,208G,225S
OM825854	40096v01_12	Thailand	2011	40096v01_12_1days	genomic RNA		subtype: CRF01_AE	1	231	6A,11T,14S,15L,27I,31G,33N,54M,58I,68X,69~,70X,71D,83T,91H,92P,110N,115V,116A,120S,148V,169F,178T,200A,207T,208G,225S
OM825855	40096v01_13	Thailand	2011	40096v01_13_1days	genomic RNA		subtype: CRF01_AE	1	231	6A,11T,14S,15L,27I,31G,33N,54M,58I,71D,83T,91H,92P,110N,115V,116A,120S,148V,169F,178T,200A,207T,208G,225S
OM825856	40100v15_01	Thailand	2010	40100v15_01_262days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,16A,31G,33N,48A,54M,58V,72A,83T,92P,120G,128D,148V,154K,178T,200S,207T,208G,225S
OM825857	40100v15_02	Thailand	2010	40100v15_02_262days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,16A,31G,33N,48A,54M,58V,72A,83T,92P,120G,128D,148V,154K,178T,200S,207T,208G,225S
OM825858	40100v15_03	Thailand	2010	40100v15_03_262days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,16A,31G,33N,48A,54M,58V,72A,83T,92P,120G,128D,148V,154K,178T,200S,207T,208G,225S
OM825859	40100v15_05	Thailand	2010	40100v15_05_262days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,16A,31G,33N,48A,54M,58V,72A,83T,92P,120G,128D,148V,154K,178T,200S,207T,208G,225S
OM825860	40100v15_06	Thailand	2010	40100v15_06_262days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,16A,31G,33N,48A,54M,58V,72A,83T,92P,120G,128D,148V,154K,178T,200S,207T,208G,225S
OM825861	40100v15_07	Thailand	2010	40100v15_07_262days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,16A,31G,33N,48A,54M,58V,72A,83T,92P,120G,128D,148V,154K,178T,200S,207T,208G,225S
OM825862	40100v15_08	Thailand	2010	40100v15_08_262days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,16A,31G,33N,48A,54M,58V,72A,83T,92P,120G,128D,148V,154K,178T,200S,207T,208G,225S
OM825863	40100v15_09	Thailand	2010	40100v15_09_262days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,16A,31G,33N,48A,54M,58V,72A,83T,92P,120G,128D,148V,154K,169HY,178T,200S,207T,208G,225S
OM825864	40100v15_10	Thailand	2010	40100v15_10_262days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,16A,31G,33N,48A,54M,58V,72A,83T,92P,120G,128D,148V,154K,178T,200S,207T,208G,225S
OM825865	40100v15_12	Thailand	2010	40100v15_12_262days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,83I,92P,120S,148V,178T,200S,207T,208G,225S
OM826007	40134v01_01	Thailand	2010	40134v01_01_2days	genomic RNA		subtype: C	1	231	6A,14S,15L,27I,31G,33N,45D,48A,54M,58I,71D,83T,87Q,92P,96I,112A,115V,116A,128D,148V,178T,191I,200S,207T,208G,225S
OM826008	40134v01_02	Thailand	2010	40134v01_02_2days	genomic RNA		subtype: C	1	231	6A,14S,15L,27I,31G,33N,45D,48A,54M,58I,71D,83T,87Q,92P,96I,112A,115V,116A,128D,148V,178T,191I,200S,201M,207T,208G,225S
OM826009	40134v01_03	Thailand	2010	40134v01_03_2days	genomic RNA		subtype: C	1	231	6A,14S,15L,27I,31G,33N,45D,48A,54M,58I,71D,83T,87Q,92P,96I,112A,115V,116A,128D,148V,178T,191I,200S,207T,208G,225S
OM826010	40134v01_04	Thailand	2010	40134v01_04_2days	genomic RNA		subtype: C	1	231	6A,14S,15L,27I,31G,33N,45D,48A,54M,58I,71D,83T,87Q,92P,96I,112A,115V,116A,128D,148V,178T,191I,200S,207T,208G,225S
OM826011	40134v01_05	Thailand	2010	40134v01_05_2days	genomic RNA		subtype: C	1	231	6A,14S,15L,27I,31G,33N,45D,48A,54M,58I,71D,83T,87Q,92P,96I,112A,115V,116A,128D,148V,178T,191I,200S,207T,208G,225S
OM826012	40134v01_07	Thailand	2010	40134v01_07_2days	genomic RNA		subtype: C	1	231	6A,14S,15L,27I,31G,33N,45D,48A,54M,58I,71D,83T,87Q,92P,96I,112A,115V,116A,128D,148V,178T,191I,200S,207T,208G,225S
OM826013	40134v01_08	Thailand	2010	40134v01_08_2days	genomic RNA		subtype: C	1	231	6A,14S,15L,27I,31G,33N,45D,48A,54M,58I,71D,83T,87Q,92P,96I,112A,115V,116A,128D,148V,178T,191I,200S,207T,208G,225S
OM826014	40134v01_09	Thailand	2010	40134v01_09_2days	genomic RNA		subtype: C	1	231	6A,14S,15L,27I,31G,33N,45D,48A,54M,58I,71D,83T,87Q,92P,96I,112A,115V,116A,128D,148V,178T,191I,200S,207T,208G,225S
OM826015	40134v01_11	Thailand	2010	40134v01_11_2days	genomic RNA		subtype: C	1	231	6A,14S,15L,27I,31G,33N,45D,48A,53K,54M,58I,71D,83T,87Q,92P,96I,112A,115V,116A,128D,148V,178T,191I,200S,207T,208G,225S
OM826016	40134v01_14	Thailand	2010	40134v01_14_2days	genomic RNA		subtype: C	1	231	6A,14S,15L,27I,31G,33N,45D,48A,54M,58I,71D,83T,87Q,92P,96I,112A,115V,116A,128D,148V,178T,191I,200S,207T,208G,225S
OM826137	40168v14_02	Thailand	2011	40168v14_02_171days	genomic RNA		subtype: CRF01_AE	1	231	6L,14P,83L,110N,116A,128D,148S,154K,180D,225S
OM826138	40168v14_03	Thailand	2011	40168v14_03_171days	genomic RNA		subtype: CRF01_AE	1	231	6L,14P,83L,110N,116A,128D,148S,154K,180D,225S
OM826139	40168v14_04	Thailand	2011	40168v14_04_171days	genomic RNA		subtype: CRF01_AE	1	231	6L,14P,83L,110N,116A,128D,148S,154K,180D,225S
OM826140	40168v14_08	Thailand	2011	40168v14_08_171days	genomic RNA		subtype: CRF01_AE	1	231	6L,14P,83L,110N,116A,128D,148S,154K,180D,225S
OM826141	40168v14_09	Thailand	2011	40168v14_09_171days	genomic RNA		subtype: CRF01_AE	1	231	6L,14P,83L,110N,116A,128D,148S,154K,180D,225S
OM826142	40168v14_10	Thailand	2011	40168v14_10_171days	genomic RNA		subtype: CRF01_AE	1	231	6L,14P,83L,110N,116A,128D,148S,154K,180D,225S
OM826143	40168v14_11	Thailand	2011	40168v14_11_171days	genomic RNA		subtype: CRF01_AE	1	231	6L,14P,83L,110N,116A,128D,148S,154K,180D,225S
OM826144	40168v14_12	Thailand	2011	40168v14_12_171days	genomic RNA		subtype: CRF01_AE	1	231	6L,14P,83L,110N,116A,128D,148S,180D,225S
OM826145	40168v14_13	Thailand	2011	40168v14_13_171days	genomic RNA		subtype: CRF01_AE	1	231	6L,14P,83L,110N,116A,128D,148S,154K,180D,225S
OM826146	40168v14_14	Thailand	2011	40168v14_14_171days	genomic RNA		subtype: CRF01_AE	1	231	6L,14P,83L,110N,116A,128D,148S,154K,180D,225S
OM826177	40211v0A_01	Thailand	2009	40211v0A_01_0days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,78V,83L,92P,120S,128D,148V,178T,200S,207T,208G,225S
OM826178	40211v0A_02	Thailand	2009	40211v0A_02_0days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,78V,83L,92P,120S,128D,148V,178T,200S,207T,208G,225S
OM826179	40211v0A_03	Thailand	2009	40211v0A_03_0days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,78V,83L,92P,120S,128D,148V,178T,200S,207T,208G,225S
OM826180	40211v0A_04	Thailand	2009	40211v0A_04_0days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,43F,54M,58I,78V,83L,92P,120S,128D,148V,178T,200S,207T,208G,225S
OM826181	40211v0A_05	Thailand	2009	40211v0A_05_0days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,78V,83L,92P,120S,128D,148V,178T,200S,207T,208G,225S
OM826182	40211v0A_06	Thailand	2009	40211v0A_06_0days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,78V,83L,92P,120S,128D,148V,178T,200S,207T,208G,225S
OM826183	40211v0A_07	Thailand	2009	40211v0A_07_0days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,78V,83L,92P,120S,128D,148V,178T,200S,207T,208G,225S
OM826184	40211v0A_08	Thailand	2009	40211v0A_08_0days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,78V,83L,92P,120S,128D,148V,178T,200S,207T,208G,225S
OM826185	40211v0A_09	Thailand	2009	40211v0A_09_0days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,78V,83L,92P,120S,128D,148V,178T,200S,207T,208G,225S
OM826186	40211v0A_10	Thailand	2009	40211v0A_10_0days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,78V,83L,92P,120S,128D,148V,178T,200S,207T,208G,225S
OM826187	40231v09_01	Thailand	2011	40231v09_01_29days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,77T,82K,83I,92P,120G,128D,148V,178T,200S,207T,208G
OM826188	40231v09_02	Thailand	2011	40231v09_02_29days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,83I,92P,120G,128D,148V,178T,200S,207T,208G
OM826189	40231v09_03	Thailand	2011	40231v09_03_29days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,83I,92P,120G,128D,148V,178T,200S,207T,208G
OM826190	40231v09_04	Thailand	2011	40231v09_04_29days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,83I,92P,120G,128D,148V,178T,200S,207T,208G
OM826191	40231v09_05	Thailand	2011	40231v09_05_29days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,83I,92P,120G,128D,148V,178T,200S,207T,208G
OM826192	40231v09_06	Thailand	2011	40231v09_06_29days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,83I,92P,120G,128D,148V,178T,193NS,200S,207T,208G
OM826193	40231v09_08	Thailand	2011	40231v09_08_29days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,83I,92P,120G,128D,148V,178T,200S,207T,208G
OM826194	40231v09_09	Thailand	2011	40231v09_09_29days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,83I,92P,120G,128D,146N,148V,178T,200S,207T,208G
OM826195	40231v09_10	Thailand	2011	40231v09_10_29days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,83I,92P,120G,128D,148V,178T,200S,207T,208G
OM826196	40231v09_12	Thailand	2011	40231v09_12_29days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,83I,92P,120G,128D,148V,178T,200S,207T,208G
OM826327	40435v01_01	Thailand	2012	40435v01_01_2days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
OM826328	40435v01_02	Thailand	2012	40435v01_02_2days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
OM826329	40435v01_03	Thailand	2012	40435v01_03_2days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
OM826330	40435v01_05	Thailand	2012	40435v01_05_2days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,103DN,110N,120S,128D,148V,178T,200S,207T,208G,225S
OM826331	40435v01_06	Thailand	2012	40435v01_06_2days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
OM826332	40435v01_07	Thailand	2012	40435v01_07_2days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
OM826333	40435v01_09	Thailand	2012	40435v01_09_2days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
OM826334	40435v01_10	Thailand	2012	40435v01_10_2days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,110N,120S,128D,148V,175EG,178T,200S,207T,208G,225S
OM826335	40435v01_11	Thailand	2012	40435v01_11_2days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,110N,120S,128D,140E,148V,178T,200S,207T,208G,225S
OM826336	40435v01_12	Thailand	2012	40435v01_12_2days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
OM826397	40491v01_01	Thailand	2012	40491v01_01_3days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,83L,92P,110N,120S,128D,148V,149C,180D,200S,207T,208G,225S
OM826398	40491v01_02	Thailand	2012	40491v01_02_3days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,83L,92P,110N,120S,128D,148V,149C,180D,200S,207T,208G,225S
OM826399	40491v01_03	Thailand	2012	40491v01_03_3days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,64AT,83L,92P,110N,120S,128D,148V,149C,180D,200S,207T,208G,225S
OM826400	40491v01_04	Thailand	2012	40491v01_04_3days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,83L,92P,103V,110N,120S,128D,148V,149C,180D,200S,207T,208G,225S
OM826401	40491v01_05	Thailand	2012	40491v01_05_3days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,83L,92P,110N,120S,128D,148V,149C,180D,200S,207T,208G,225S
OM826402	40491v01_06	Thailand	2012	40491v01_06_3days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,83L,92P,110N,120S,128D,148V,149C,180D,200S,207T,208G,225S
OM826403	40491v01_07	Thailand	2012	40491v01_07_3days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,83L,92P,110N,120S,128D,148V,149C,180D,200S,207T,208G,225S
OM826404	40491v01_08	Thailand	2012	40491v01_08_3days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,83L,92P,110N,120S,128D,148V,149C,180D,200S,207T,208G,225S
OM826405	40491v01_09	Thailand	2012	40491v01_09_3days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,83L,92P,110N,120S,128D,148V,149C,180D,200S,207T,208G,225S
OM826406	40491v01_10	Thailand	2012	40491v01_10_3days	genomic RNA		subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,83L,92P,110N,120S,128D,148V,149C,180D,200S,207T,208G,225S
OM826417	40492v01_01	Thailand	2012	40492v01_01_4days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,83I,87Q,92P,96I,120S,128D,148V,178T,200S,207T,208G,225S
OM826418	40492v01_02	Thailand	2012	40492v01_02_4days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,83I,87Q,92P,96I,120S,128D,148V,178T,200S,207T,208G,225S
OM826419	40492v01_03	Thailand	2012	40492v01_03_4days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,83I,87Q,92P,96I,120S,128D,148V,176R,178T,200S,207T,208G,225S
OM826420	40492v01_04	Thailand	2012	40492v01_04_4days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,83I,87Q,92P,96I,120S,128D,148V,178T,200S,207T,208G,225S
OM826421	40492v01_05	Thailand	2012	40492v01_05_4days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15V,19X,31G,33N,54M,58I,83I,87Q,92P,96I,120S,128D,148V,178T,200S,207T,208G,225S
OM826422	40492v01_06	Thailand	2012	40492v01_06_4days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,83I,87Q,92P,96I,120S,128D,148V,178T,200S,207T,208G,225S
OM826423	40492v01_07	Thailand	2012	40492v01_07_4days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,83I,87Q,92P,96I,120S,128D,148V,178T,200S,207T,208G,225S
OM826424	40492v01_08	Thailand	2012	40492v01_08_4days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,83I,87Q,92P,96I,120S,128D,148V,178T,200S,207T,208G,225S
OM826425	40492v01_09	Thailand	2012	40492v01_09_4days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,83I,87Q,92P,96I,120S,128D,148V,178T,200S,207T,208G,225S
OM826426	40492v01_11	Thailand	2012	40492v01_11_4days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,83I,87Q,92P,96I,120S,128D,148V,178T,200S,207T,208G,225S
OM826770	40700v03_02	Thailand	2013	40700v03_02_15days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,208G,210S,225S
OM826771	40700v03_03	Thailand	2013	40700v03_03_15days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,208G,210S,225S
OM826772	40700v03_04	Thailand	2013	40700v03_04_15days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,208G,210S,225S
OM826773	40700v03_05	Thailand	2013	40700v03_05_15days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,208G,210S,225S
OM826774	40700v03_06	Thailand	2013	40700v03_06_15days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,208G,210S,225S
OM826775	40700v03_07	Thailand	2013	40700v03_07_15days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,208G,210S,225S
OM826776	40700v03_08	Thailand	2013	40700v03_08_15days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,208G,210S,225S
OM826777	40700v03_09	Thailand	2013	40700v03_09_15days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,208G,210S,225S
OM826778	40700v03_10	Thailand	2013	40700v03_10_15days	genomic RNA		subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,92P,104V,120S,128D,148V,178T,200S,208G,210S,225S
OM826779	40737v0A_01	Thailand	2013	40737v0A_01_0days	genomic RNA		subtype: CRF01_AE	1	231	6A,31G,33N,54M,58I,87Q,92P,96I,178T,200S,207T,208G,216V,225S