Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Claiborne (2015)	Replicative fitness of transmitted HIV-1 drives acute immune activation, proviral load in memory CD4+ T cells, and disease progression	Proc. Natl. Acad. Sci. U.S.A. 112 (12), E1480-E148	4.18e-163	127	6	Naive	PBMC	Uncertain	Acute infection

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Accession	IsolateName	Country	Coll Date	MolType	Note	FirstAA	LastAA	MutList
KP715789	ZM1.9F_25-Jan-2008	Zambia	25-Jan-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,31N,41T,71D,83L,86I,91V,96I,110N,116T,120G,128D,148V,154K,169F,171V,180D,187D,200A,203R,208G,210S,225S
KP715723	ZM1006M_18-Apr-2007	Zambia	18-Apr-2007	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,31S,41T,71D,83L,91T,110N,116A,120G,124V,135V,154K,169F,178T,187D,203R,208G,225S
KP715724	ZM1008M_14-Mar-2007	Zambia	14-Mar-2007	genomic RNA	subtype: C	1	231	6H,14V,15L,27I,41T,50S,71D,83L,87Q,88V,111T,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KP715725	ZM1022M_28-Apr-2007	Zambia	28-Apr-2007	genomic RNA	subtype: C	1	231	6L,41T,44A,50G,59I,71D,83L,87Q,96I,116A,120S,124V,148V,154K,169F,178T,180D,187D,203R,208G,225S
KP715726	ZM1023M_26-May-2007	Zambia	26-May-2007	genomic RNA	subtype: C	1	231	14P,27I,41T,71D,83L,110N,116A,120S,124V,128D,148V,169F,180D,187D,203R,208G
KP715727	ZM1024F_02-Dec-2006	Zambia	02-Dec-2006	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,29D,41T,71D,83L,110N,116A,120G,128D,148V,169F,171V,180D,187D,207S,208G
KP715728	ZM103F_17-Sep-2008	Zambia	17-Sep-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83T,116N,120G,128D,148V,154K,169F,178T,180D,203R,208G
KP715729	ZM1043M_23-Feb-2006	Zambia	23-Feb-2006	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,96I,116T,128D,148V,154K,169F,178T,183G,187D,203R,208G
KP715730	ZM1044M_25-Mar-2006	Zambia	25-Mar-2006	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,31G,33N,41T,71D,83L,110N,115V,116A,120G,123A,128D,148V,169F,178T,187D,203R,208G,210S
KP715731	ZM1047M_14-Aug-2007	Zambia	14-Aug-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91V,116T,120S,128D,148V,154K,169F,177S,178T,187D,191I,203R,207Q,208G
KP715732	ZM1057M_28-Jan-2006	Zambia	28-Jan-2006	genomic RNA	subtype: C	1	231	6L,14N,27I,41T,71D,83L,91V,116N,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KP715733	ZM1065M_04-Aug-2006	Zambia	04-Aug-2006	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,68I,71D,83T,91V,110N,116A,120S,124T,135V,148V,154K,169F,178T,180D,203R,208G,210S,211I,225S
KP715734	ZM1067M_31-Jul-2009	Zambia	31-Jul-2009	genomic RNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,91N,116A,120S,128D,148V,169F,178T,180D,187D,203R,208G
KP715735	ZM106F_04-Sep-2008	Zambia	04-Sep-2008	genomic RNA	subtype: C	1	231	6L,10P,11M,14P,17A,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G,225S
KP715736	ZM1072M_16-Aug-2006	Zambia	16-Aug-2006	genomic RNA	subtype: C	1	231	6L,14N,27I,41T,71D,83L,86A,87Q,91V,96I,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
KP715737	ZM1076M_28-Oct-2006	Zambia	28-Oct-2006	genomic RNA	subtype: C	1	231	27I,41T,71D,83L,86A,87Q,96I,116T,118I,120G,148V,154K,169F,178T,187D,199R,200N,203R,208G,225S
KP715738	ZM1082F_13-Sep-2006	Zambia	13-Sep-2006	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91N,96I,116T,120S,128D,148V,169F,178T,180D,203R,208G
KP715739	ZM1094F_04-Jul-2008	Zambia	04-Jul-2008	genomic RNA	subtype: C	1	231	14P,15L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,200N,203R,208G,225S
KP715740	ZM1114M_19-Jul-2007	Zambia	19-Jul-2007	genomic RNA	subtype: C	1	231	6A,27I,41T,71D,83L,116A,128D,148V,154K,169F,178T,180D,187D,203R,210S
KP715741	ZM1123M_15-May-2008	Zambia	15-May-2008	genomic RNA	subtype: C	1	231	6L,14T,15L,27I,41T,50V,71D,83L,87Q,91V,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KP715742	ZM1124F_18-May-2006	Zambia	18-May-2006	genomic RNA	subtype: C	1	231	6L,27I,29D,41T,71D,83L,94N,96I,116T,120S,124V,128D,148V,169F,178T,180D,187D,191I,207Q,208G,210S
KP715743	ZM1125M_07-Apr-2006	Zambia	07-Apr-2006	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,116N,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S,229K
KP715744	ZM1146F_04-Jan-2008	Zambia	04-Jan-2008	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,87Q,91V,96L,110N,116A,124V,128D,148V,169F,178T,180D,203R,208G,210S,225S
KP715745	ZM1149M_17-Mar-2007	Zambia	17-Mar-2007	genomic RNA	subtype: C	1	231	6L,31G,33N,71D,83L,116A,128D,148V,154K,169F,170R,178T,180D,187D,203R,208G,210S
KP715746	ZM1165M_16-Mar-2006	Zambia	16-Mar-2006	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,112A,116A,124V,128D,148V,169F,171V,178T,180D,187D,207S,208G,225S
KP715747	ZM1166M_04-Feb-2006	Zambia	04-Feb-2006	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,41T,50T,71D,83L,87Q,91V,96I,110N,116T,120S,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G,225S
KP715748	ZM1167M_10-Apr-2007	Zambia	10-Apr-2007	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,41T,71D,83T,116A,128D,148V,169F,178T,187D,203R,208G
KP715749	ZM1180M_21-Apr-2006	Zambia	21-Apr-2006	genomic RNA	subtype: C	1	231	6L,14P,15M,16T,41T,71D,83L,87Q,110N,116A,120A,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
KP715750	ZM1213M_18-Feb-2006	Zambia	18-Feb-2006	genomic RNA	subtype: C	1	231	6A,14P,27I,41T,71D,83L,91V,110N,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KP715751	ZM1286M_12-Jun-2008	Zambia	12-Jun-2008	genomic RNA	subtype: C	1	231	41T,54M,71D,86P,87Q,91V,96I,98D,116T,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KP715752	ZM1317M_13-Dec-2005	Zambia	13-Dec-2005	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,78V,83T,86A,87Q,91V,116A,120S,124V,148V,154K,169F,178T,183G,187D,203R,208G,225S
KP715753	ZM1385M_21-Mar-2006	Zambia	21-Mar-2006	genomic RNA	subtype: C	1	231	6L,11A,12Y,14S,27I,36I,71D,83L,91V,116A,120G,123A,124V,128D,136M,148V,169F,178T,187D,203R,208G
KP715754	ZM1413M_13-Jun-2007	Zambia	13-Jun-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,50G,59I,71D,83T,91V,116A,120S,124V,135V,148V,154K,169F,171V,178T,183H
KP715755	ZM1464M_10-Mar-2007	Zambia	10-Mar-2007	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,36I,41T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,200N,203R,208G
KP715756	ZM1480F_11-Apr-2007	Zambia	11-Apr-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91A,116A,120G,128D,148V,154K,169F,177S,178T,187D,203R,207T,208G
KP715757	ZM148M_14-Apr-2009	Zambia	14-Apr-2009	genomic RNA	subtype: C	1	231	6M,14P,27I,41T,50S,54V,71D,79D,83L,91V,116A,120S,124V,128D,148V,169F,178T,203R,208G,209P
KP715758	ZM1494F_18-Nov-2006	Zambia	18-Nov-2006	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83I,116A,120S,124V,148V,154K,169F,170R,171I,180D,187D,203R,208G,210N,225S
KP715759	ZM1507M_03-May-2006	Zambia	03-May-2006	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171V,178T,180D,203R,225S
KP715760	ZM1509M_06-Feb-2008	Zambia	06-Feb-2008	genomic RNA	subtype: C	1	231	6P,14S,27I,41T,45D,52M,54A,58I,71D,83L,86A,91V,96I,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G
KP715761	ZM1515M_09-Nov-2006	Zambia	09-Nov-2006	genomic RNA	subtype: C	1	231	6F,27I,31G,33N,41T,52I,71D,83L,87Q,91V,112P,115V,116A,120S,124V,128D,132K,136M,148V,154K,169F,178T,180D,187D,203R,208G
KP715762	ZM1534F_10-Dec-2009	Zambia	10-Dec-2009	genomic RNA	subtype: C	1	231	6M,26A,27I,31G,33N,36I,41T,68L,71D,79D,83L,91V,116A,128D,135V,148V,169F,178T,180D,203R,204G,207T,208G,210S
KP715763	ZM1541M_23-Jan-2009	Zambia	23-Jan-2009	genomic RNA	subtype: C	1	231	14P,15L,27I,31N,41T,71D,83L,87Q,91V,110N,116A,120S,128D,148V,154K,169F,171V,178T,187D,203R,204S,208G,210S,225S
KP715764	ZM1573F_23-Feb-2006	Zambia	23-Feb-2006	genomic RNA	subtype: C	1	231	6L,27I,33N,36I,41T,71D,83L,91V,96I,116T,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
KP715765	ZM1613F_17-Jun-2006	Zambia	17-Jun-2006	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,96I,116T,128D,148V,154K,169F,178T,188S,203R,208G
KP715766	ZM1626M_23-Aug-2006	Zambia	23-Aug-2006	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,31N,41T,71D,83L,112A,115V,116A,118I,120G,148V,163E,169F,178T,180D,187D,203R,208G,210S,225S
KP715767	ZM1639M_20-Feb-2009	Zambia	20-Feb-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,113D,116A,120S,128D,148V,154K,169F,171C,178T,180D,203R
KP715768	ZM164M_07-Aug-2009	Zambia	07-Aug-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,110N,116A,120A,123A,148V,154K,169F,171V,183G,187D,191I,207Q,208G,210S
KP715769	ZM1658F_08-Jun-2006	Zambia	08-Jun-2006	genomic RNA	subtype: C	1	231	6Q,27I,41T,71D,75D,83L,116A,148V,154K,169F,178T,187D,200S,207S,208G,225S
KP715770	ZM1662F_08-Jun-2006	Zambia	08-Jun-2006	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,50S,54S,71D,83L,116A,128D,148V,169F,171A,178T,187D,207S,208G,225S
KP715771	ZM1685M_09-Mar-2006	Zambia	09-Mar-2006	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83L,87Q,91V,116A,120G,123G,124V,128D,148V,154K,169F,178T,183G,187D,203R,208G,225S
KP715772	ZM1699F_30-Sep-2008	Zambia	30-Sep-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91A,96V,116A,120S,148V,154K,169F,178T,180D,187D,191L,208G,210S,225S
KP715773	ZM16M_07-Jun-2007	Zambia	07-Jun-2007	genomic RNA	subtype: C	1	231	6L,14P,27I,41T,83L,87Q,96L,113D,116A,120A,128D,148V,154K,180D,187D,203R,208G,211I,225S
KP715774	ZM1707F_15-Dec-2007	Zambia	15-Dec-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,87Q,91V,116A,120S,128D,148V,154K,169F,178T,200N,203R,208G
KP715775	ZM1710F_14-Nov-2006	Zambia	14-Nov-2006	genomic RNA	subtype: C	1	231	6L,27I,41T,59I,71D,79D,116A,124V,148V,154K,169F,177S,187D,207S,208G
KP715776	ZM1781M_12-Feb-2008	Zambia	12-Feb-2008	genomic RNA	subtype: C	1	231	6L,13N,14P,15L,41T,55L,71D,116A,120A,128D,148V,154K,169F,178T,203R,208G,225S
KP715777	ZM1788F_10-Feb-2007	Zambia	10-Feb-2007	genomic RNA	subtype: C	1	231	6L,14S,27I,41T,50A,71D,83L,86P,87Q,91V,96I,98D,116T,120S,124V,128D,148V,154K,169F,178T,187D,203R,204G,208G,225S
KP715778	ZM1792M_18-Dec-2007	Zambia	18-Dec-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,75D,83L,91A,116A,120S,128D,148V,154K,169F,177S,187D,203R,208G
KP715779	ZM179M_27-May-2009	Zambia	27-May-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,54V,71D,83L,91H,92P,93A,116A,128D,148V,154K,169F,178T,187D,200S,203R,208G,225S
KP715780	ZM1801F_03-Nov-2007	Zambia	03-Nov-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,45D,71D,83L,116A,120G,124V,148V,154K,169F,178T,180D,203R,208G,210S,225S
KP715781	ZM1803F_12-Jul-2007	Zambia	12-Jul-2007	genomic RNA	subtype: C	1	231	6L,14P,27I,36I,41T,45G,50E,71D,83L,87Q,91V,110N,116A,120S,128D,148V,154K,169F,178T,180D,187D,191I,203R,208G,210S
KP715782	ZM1808F_24-Jan-2008	Zambia	24-Jan-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,116A,124V,148V,154K,169F,171V,180D,187D,208G,225S
KP715783	ZM1862M_26-Jul-2008	Zambia	26-Jul-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,52I,71D,83T,87Q,91V,96I,116A,124V,132K,148V,154K,169F,178T,180D,187D,191I,203R,208G,225S
KP715784	ZM1863M_18-Oct-2008	Zambia	18-Oct-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,87Q,91V,96V,116A,120S,128D,136M,148V,154K,169F,171C,177C,178T,180D,187D,208G,210S,225S
KP715785	ZM1906M_28-May-2009	Zambia	28-May-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,75D,83L,86A,91V,116A,120S,124V,148V,169F,178T,203R,208G
KP715786	ZM1940M_26-Aug-2009	Zambia	26-Aug-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,75D,83L,91V,120S,148V,154K,169F,178T,180D,187D,203R,208G,225S
KP715787	ZM1953F_06-Dec-2008	Zambia	06-Dec-2008	genomic RNA	subtype: C	1	231	6A,27I,41T,45D,68L,71D,83L,92P,116A,120S,124V,128D,148V,154K,169F,178T,180D,203R,208G,225S
KP715788	ZM1957M_11-Mar-2008	Zambia	11-Mar-2008	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,75D,79D,83L,91V,116A,120S,124V,148V,154K,169F,178T,187D,200S,203R,208G,225S
KP715790	ZM2003M_08-Aug-2008	Zambia	08-Aug-2008	genomic RNA	subtype: C	1	231	6L,27I,41T,50A,71D,83L,116A,120S,128D,135V,136M,148V,154K,169F,177S,178T,187D,203R,208G,210S,225S,230I
KP715791	ZM2006M_13-May-2009	Zambia	13-May-2009	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,41T,71D,83L,91N,92P,93A,112A,116A,118I,120G,148V,154K,169F,178T,180D,187D,203R,208G
KP715792	ZM2013F_02-May-2008	Zambia	02-May-2008	genomic RNA	subtype: C	1	231	14P,15L,26A,30R,41T,59I,68I,71D,83L,87Q,96I,110N,115V,116A,120S,124V,139T,141V,148V,154K,169F,178T,180D,187D,200A,203R,208G,210S,211I,225S
KP715793	ZM2063M_29-Apr-2008	Zambia	29-Apr-2008	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,36I,41T,71D,83L,115V,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
KP715794	ZM236M_12-Feb-2009	Zambia	12-Feb-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,86A,87Q,96I,116T,124V,148V,154K,169F,178T,183G,187D,203R,208G,210S,225S
KP715795	ZM26F_16-Oct-2007	Zambia	16-Oct-2007	genomic RNA	subtype: C	1	231	6L,13M,14P,15L,27I,31G,33N,41T,71D,83L,87Q,91A,96L,111P,116A,124V,128D,135V,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KP715796	ZM27M_02-Feb-2007	Zambia	02-Feb-2007	genomic RNA	subtype: C	1	231	6L,27I,31G,33N,41T,71D,83L,116A,135V,148V,154K,169F,177S,187D,203R,207S,208G,225S
KP715797	ZM282F_08-Apr-2009	Zambia	08-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,79D,83L,91M,93A,113D,116A,120G,136I,148V,169F,178T,183G,187D,203R,208G
KP715798	ZM290F_18-May-2010	Zambia	18-May-2010	genomic RNA	subtype: C	1	231	6L,14P,15L,31G,33N,41T,52M,71D,83L,86A,87Q,91F,92P,93A,96I,116H,120S,148V,154K,160S,169F,178T,180D,187D,208G,210S
KP715799	ZM310F_21-Sep-2005	Zambia	21-Sep-2005	genomic RNA	subtype: C	1	231	3I,6L,10H,27I,41T,50F,54I,71D,83I,91V,116A,120G,128D,135V,148V,154K,169F,178T,180D,187D,191I,203R,208G,210S
KP715800	ZM312F_07-Oct-2005	Zambia	07-Oct-2005	genomic RNA	subtype: C	1	231	6L,14S,27I,41T,71D,83L,91V,96L,116A,124V,128D,148V,154K,169F,171I,180D,187D,203R,204G,207Q,208G,210S,225S
KP715801	ZM319M_30-Nov-2005	Zambia	30-Nov-2005	genomic RNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,91N,92P,120G,128D,148V,169F,171V,178T,180D,203R
KP715802	ZM320F_13-Feb-2009	Zambia	13-Feb-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,92P,110N,116A,120S,124V,128D,148V,169F,178T,180D,187D,203R,208G,225S
KP715803	ZM321F_21-Dec-2005	Zambia	21-Dec-2005	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,91V,116A,120S,124V,148V,169F,178T,200S,203R,225S
KP715804	ZM323M_11-Jan-2006	Zambia	11-Jan-2006	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,75D,83L,91V,116A,120S,128D,148V,154K,169F,177S,187D,203R,208G,225S
KP715805	ZM326M_17-Feb-2007	Zambia	17-Feb-2007	genomic RNA	subtype: C	1	231	6L,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,191I,203R,208G
KP715806	ZM331M_08-Apr-2009	Zambia	08-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,116T,120S,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G
KP715807	ZM333F_30-Sep-2008	Zambia	30-Sep-2008	genomic RNA	subtype: C	1	231	6L,10H,15L,27I,41T,50T,71D,75D,83L,116A,120S,148V,154K,160S,169F,178T,187D,200S,203R,208G,225S
KP715808	ZM3471M_25-Jul-2009	Zambia	25-Jul-2009	genomic RNA	subtype: C	1	231	6H,27I,41T,50S,71D,83M,86P,87Q,91V,96I,98D,113D,116T,120S,148V,154K,169F,178T,180D,203R,208G
KP715809	ZM34F_05-Sep-2007	Zambia	05-Sep-2007	genomic RNA	subtype: C	1	231	31G,33N,41T,68I,71D,83L,87Q,91V,96I,116T,120S,121T,128D,129L,148V,154K,169F,178T,180D,187D,203R,204G,207Q,208G,210S,225S
KP715810	ZM3558M_30-Jan-2010	Zambia	30-Jan-2010	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,110N,116A,120S,124V,148V,169F,180D,187D,203R,208G,210S
KP715811	ZM3576F_28-Mar-2009	Zambia	28-Mar-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,75D,83L,91V,92V,116A,118I,120G,124V,148V,154K,169F,177G,178T,187D,203R,208G
KP715812	ZM3618M_18-Jun-2009	Zambia	18-Jun-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G
KP715813	ZM3635F_12-Jan-2010	Zambia	12-Jan-2010	genomic RNA	subtype: C	1	231	6L,14P,15L,41T,71D,83L,91V,112N,116A,118I,120G,148V,169F,178T,180D,187D,203R,208G
KP715814	ZM3658M_24-Jan-2009	Zambia	24-Jan-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,86A,87Q,96I,116T,120G,124V,148V,154K,169F,178T,180D,187D,210S
KP715815	ZM3678M_17-Sep-2009	Zambia	17-Sep-2009	genomic RNA	subtype: C	1	231	15L,27I,41T,50R,71D,83L,87Q,91V,116A,120A,128D,148V,154K,169F,171I,178T,200S,203R,225S
KP715816	ZM3681F_28-Apr-2009	Zambia	28-Apr-2009	genomic RNA	subtype: C	1	231	6H,14P,27I,41T,50S,71D,83M,87Q,96I,110N,116T,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KP715817	ZM3701M_25-Mar-2009	Zambia	25-Mar-2009	genomic RNA	subtype: C	1	231	6L,14P,27I,31G,33N,41T,71D,83L,116A,120S,128D,129M,148V,154K,169F,178T,180D,187D,203R,208G
KP715818	ZM3733M_15-Jul-2009	Zambia	15-Jul-2009	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,96V,116A,148V,154K,169F,178T,180D,187D,203R,208G,225S
KP715819	ZM3779M_06-Aug-2009	Zambia	06-Aug-2009	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,87Q,91V,96L,110N,116A,120S,124V,148V,169F,178T,180D,187D,203R,208G,229K
KP715820	ZM37F_17-Oct-2007	Zambia	17-Oct-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,87Q,91V,96L,110N,112S,116A,120H,124V,148V,154K,169F,178T,180D,187D,203R,208G,225S
KP715821	ZM3802M_31-Oct-2009	Zambia	31-Oct-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,191I,200H,208G,210S,225S
KP715822	ZM3827M_10-Jul-2009	Zambia	10-Jul-2009	genomic RNA	subtype: C	1	231	6L,15L,31N,41T,59I,71D,83T,107S,116T,120S,124V,148V,169F,171A,178T,180D,190M,204G,208G,225S
KP715823	ZM3841F_29-May-2009	Zambia	29-May-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83T,86A,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G
KP715824	ZM3863F_24-Sep-2009	Zambia	24-Sep-2009	genomic RNA	subtype: C	1	231	27I,41T,71D,91V,96L,116A,120A,124V,128D,148V,154K,169F,171V,178T,180D,203R,225S
KP715825	ZM38F_21-Apr-2007	Zambia	21-Apr-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91A,96L,116A,124V,128D,148V,169F,178T,187D,203R,208G
KP715826	ZM3F_22-Nov-2006	Zambia	22-Nov-2006	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,91A,116A,120G,124V,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G,225S
KP715827	ZM401F_14-Apr-2010	Zambia	14-Apr-2010	genomic RNA	subtype: C	1	231	6L,14S,15L,41T,54V,75D,83T,87Q,91V,96I,116Q,120S,128D,148V,154K,169F,178T,187D,191I,203R,208G,211I,225S
KP715828	ZM403F_01-Nov-2006	Zambia	01-Nov-2006	genomic RNA	subtype: C	1	231	6L,27I,36I,41T,71D,83T,91H,92P,96L,116A,128D,135V,148V,154K,169F,170R,171C,178T,187D,208G,210N,225S
KP715829	ZM41F_17-Jan-2008	Zambia	17-Jan-2008	genomic RNA	subtype: C	1	231	6L,15L,41T,71D,83L,116A,120S,123A,148V,154K,169F,177S,187D,203R,208G,225S,230I
KP715830	ZM434M_31-Jan-2007	Zambia	31-Jan-2007	genomic RNA	subtype: C	1	231	6L,15L,27I,36I,41T,71D,83L,87Q,91V,110N,116A,128D,148V,154K,169F,178T,183G,187D,203R,208G,210S
KP715831	ZM445M_05-May-2006	Zambia	05-May-2006	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,86Q,87A,91V,96I,98D,110N,116T,120G,148V,169F,178T,187D,203R,208G
KP715832	ZM448F_01-Apr-2009	Zambia	01-Apr-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,87Q,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S,225S
KP715833	ZM44F_09-Jun-2007	Zambia	09-Jun-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83I,91V,116T,120S,124V,148V,154K,169F,178T,187D,200V,203R,204G,208G
KP715834	ZM480M_03-Mar-2007	Zambia	03-Mar-2007	genomic RNA	subtype: C	1	231	6L,15L,41T,50A,83L,86A,87Q,91L,96I,102N,116T,120S,148V,154K,169F,178T,180D,187D,203R,208G
KP715835	ZM495F_04-Jan-2007	Zambia	04-Jan-2007	genomic RNA	subtype: C	1	231	6L,14P,27I,41T,71D,83L,96L,115V,116A,124V,128D,148V,169F,170R,171V,178T,180D,187D,207S,208G,210S,225S
KP715836	ZM498F_11-Feb-2006	Zambia	11-Feb-2006	genomic RNA	subtype: C	1	231	14P,15L,27I,31N,41T,54S,59I,71D,83L,91A,98D,116A,120G,123A,128D,148V,154K,163E,169F,178T,187D,203R,208G,225S
KP715837	ZM503F_09-Feb-2007	Zambia	09-Feb-2007	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83M,91V,96I,110N,115V,116T,120S,128D,148V,154K,169F,178T,187D,203R,208G,225S
KP715838	ZM504M_12-Sep-2006	Zambia	12-Sep-2006	genomic RNA	subtype: C	1	231	6L,14S,15L,27I,41T,71D,83L,116A,120S,128D,148V,169F,178T,187D,203R,208G
KP715839	ZM563M_12-Apr-2006	Zambia	12-Apr-2006	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,96L,116A,124V,128D,148V,169F,178T,203R,208G,210S
KP715840	ZM57M_20-May-2008	Zambia	20-May-2008	genomic RNA	subtype: C	1	231	6L,14V,15L,27I,41T,50S,71D,83L,91V,116N,120G,124V,148V,154K,169F,171A,178T,180D,187D,207T,208G,209P,225A
KP715841	ZM586F_13-Apr-2010	Zambia	13-Apr-2010	genomic RNA	subtype: C	1	231	6L,27I,41T,50A,71D,83L,87Q,96I,98D,116A,120S,124V,128D,148V,154K,169F,178T,183G,187D,191I,203R,208G,210S,225S
KP715842	ZM59M_14-Aug-2008	Zambia	14-Aug-2008	genomic RNA	subtype: C	1	231	6L,13N,14P,15L,27I,41T,71D,116A,120S,128D,148V,154K,169F,178T,180D,187D,191I,203R,208G
KP715843	ZM634F_24-Jul-2007	Zambia	24-Jul-2007	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,87P,91V,98D,110N,116A,120S,128D,148V,169F,178T,180D,187D,203R,208G,210S
KP715844	ZM63F_10-Jun-2008	Zambia	10-Jun-2008	genomic RNA	subtype: C	1	231	6L,13N,14P,27I,29D,41T,71D,83L,96I,116T,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
KP715845	ZM642M_17-Mar-2009	Zambia	17-Mar-2009	genomic RNA	subtype: C	1	231	6L,27I,41T,71D,83L,93H,116A,120G,123A,128D,148V,154K,169F,177S,178T,187D,207S,208G,210S
KP715846	ZM67F_22-Apr-2008	Zambia	22-Apr-2008	genomic RNA	subtype: C	1	231	6L,14P,15L,41T,52M,71D,83T,87P,91L,96L,98D,116A,128D,148V,154K,169F,177S,187D,207S,208G,225S
KP715847	ZM77M_13-Mar-2008	Zambia	13-Mar-2008	genomic RNA	subtype: C	1	231	6L,15L,27I,41T,71D,83L,116A,120S,148V,154K,169F,178T,180D,187D,191I,200L,204G,207S,208G,230I
KP715848	ZM851F_22-Apr-2006	Zambia	22-Apr-2006	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,31N,41T,71D,83L,87Q,91V,107A,110N,116A,120S,148V,154K,169F,178T,183S,187D,203R,204G,208G,209V
KP715849	ZM9F_22-Nov-2006	Zambia	22-Nov-2006	genomic RNA	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,110N,112A,116A,120G,124V,128D,148V,154K,169F,178T,180D,203R,208G,210S,225S

Genbank References: capsid (p24)

Database

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Team