<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Niama (2016) HIV-1 subtypes and recombinants in the Republic of Congo Infect. Genet. Evol. 6 (5), 337-343 (2006) 1.65e-166 78 114 Naive PBMC Direct PCR Molecular epidemiology

Download sequences

AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
AM085037CgARV07gRepublic of the Conggenomic DNA12186A,27I,41T,54M,58I,71D,91A,92P,120G,124V,135V,148V,169F,178T,182EK,187D,208G,213D
AM085007CgARV112gRepublic of the Conggenomic DNA2222333N,54S,58A,83L,91V,120S,148V,180D,207V,208G
AM085008CgARV117gRepublic of the Conggenomic DNA1221927I,54M,58I,71D,83L,92P,120S,128D,148V,169F,178T
AM085009CgARV118gRepublic of the Conggenomic DNA720914P,31N,41T,50S,59I,71D,83I,86P,87Q,96I,110N,116R,120S,128D,148V,154K,169F,178T,180D,187D,200V,203R,204G,207A,208G
AM085012CgARV126gRepublic of the Conggenomic DNA12216L,15L,33N,50S,54S,58A,83L,91V,120S,128D,148V,154K,183S,187D,208G
AM085013CgARV129gRepublic of the Conggenomic DNA52156L,15L,50S,54S,58A,83L,91V,110N,116A,120S,128D,146C,148V,160PS,180D,208G
AM085014CgARV137gRepublic of the Conggenomic DNA52156A,14T,27I,31Q,50H,83L,86P,87Q,92P,93Q,96L,115M,116A,118I,120S,148V,169F,171A,178T,183G,187D,191A,203R
AM085016CgARV138gRepublic of the Conggenomic DNA1521826A,31S,44A,58I,71D,83L,86Q,87Q,91L,92P,96I,116V,148V,169F,178T,183G,203R,208G,211I
AM085038CgARV19gRepublic of the Conggenomic DNA42056T,11MV,14V,15M,26A,27I,41T,54M,58I,71D,83I,91N,92P,120AGST,148V,154K,169F,172FL,178T,200G,203R
AM085036CgARV24gRepublic of the Conggenomic DNA22156A,27I,41T,71D,83I,86P,87Q,91L,92P,96I,116A,120G,122Q,148V,153V,169F,171V,178T,180D,203R,204G,207A,208G
AM085039CgARV26gRepublic of the Conggenomic DNA22096T,11I,14N,15L,27I,41T,54M,58I,71D,92Q,93A,120S,148V,169F,178T,180D,207T,208G
AM085035CgARV27gRepublic of the Conggenomic DNA92189G,15L,33N,44A,83L,91IV,110N,120S,148V,180D,194AS,208G,210S
AM085034CgARV32gRepublic of the Conggenomic DNA1622127I,41T,50G,59I,75D,83L,87Q,91V,120A,143K,148V,177C,178T,180D,193H
AM085040CgARV33gRepublic of the Conggenomic DNA22226A,11I,14P,15L,16T,27I,31G,33K,54M,58I,71D,83L,87HQ,92P,96I,111I,115IV,120S,128D,148V,154K,169F,178T,187D,200S,203R,207A,208G
AM085032CgARV37gRepublic of the Conggenomic DNA1521815M,44A,54S,58I,71D,83L,86Q,87Q,92P,96I,115V,116R,120S,148V,169F,178T,183G,187D,203R,208G
AM085031CgARV38gRepublic of the Conggenomic DNA1521852M,71D,83T,87Q,91L,92P,96I,102G,116T,120S,148V,169F,178T,187D,208G,210S
AM085030CgARV41gRepublic of the Conggenomic DNA1621754M,58V,71D,92P,120G,123A,124V,131R,154K,169F,171C,178T,200S,207A,208G,210S
AM085029CgARV47gRepublic of the Conggenomic DNA1321515L,27I,52I,83L,91A,110N,120S,134V,148V
AM085042CgARV48gRepublic of the Conggenomic DNA52186A,14P,33R,54V,71D,83L,92P,115V,116A,120S,128D,132K,148V,169F,170I,178T,180D,187S,203R,208G,211I
AM085043CgARV53gRepublic of the Conggenomic DNA22236A,14P,15L,27I,31G,33N,41T,54M,58I,71D,83T,87Q,91F,92P,96I,110N,112N,116A,135V,148V,154K,169F,178T,183G,187D,203R,207S,208G
AM085027CgARV56gRepublic of the Conggenomic DNA1121415L,27I,71D,116A,120G,124V,148V,169F,170R,178T,187D,203R,208G
AM085025CgARV60gRepublic of the Conggenomic DNA1322314S,15L,27I,31G,33N,41T,54M,58I,71D,83T,87Q,92P,102G,120S,124V,135V,148V,169F,178T,180D,200S,207T,208G
AM085024CgARV63gRepublic of the Conggenomic DNA42296A,71D,75D,83L,86R,87Q,92P,96I,100S,116T,120G,148V,169F,178T,183G,187D,203R,208G
AM085046CgARV64gRepublic of the Conggenomic DNA22056A,26A,27I,41T,54M,58I,59I,71D,91AV,120S,148V,169F,178T,186AT
AM085047CgARV67gRepublic of the Conggenomic DNA42266A,11I,50AT,61EG,71D,83Q,92P,116A,120S,124V,128DE,132KR,148V,154K,169F,178T,180D,184*W,187D,203KR,206EG,208G,210S,211I,214IM,222EG,225S
AM085023CgARV75gRepublic of the Conggenomic DNA1521715M,27I,41ST,54M,58I,59I,71D,91V,110N,120S,148V,154K,169F,178T,187D,208G,210S,211I
AM085048CgARV76gRepublic of the Conggenomic DNA1821850S,71D,83M,86Q,87Q,91F,92P,96I,116T,120S,148V,169F,180D,187D,208G
AM085022CgARV80gRepublic of the Conggenomic DNA2123171D,75D,83I,86P,87Q,91L,92P,96I,110N,116I,120S,148V,169F,178T,183G,203R,208G,229E,231W
AM085021CgARV82gRepublic of the Conggenomic DNA2322831S,41T,71D,83L,87Q,91V,110N,116A,120S,148V,169F,180D,187D,200A,203R,208G,210S
AM085019CgARV93gRepublic of the Conggenomic DNA22206A,16T,27I,31N,71D,83L,86P,87Q,92P,96I,110S,116T,120S,148V,169F,171V,178T,187D,200N,207T,208G
AM085049CgAS07gRepublic of the Conggenomic DNA22306A,71D,83L,86Q,87Q,92P,96I,115V,116R,120S,148V,169F,178T,183A,203R,208G,210S,225S
AM085050CgAS09gRepublic of the Conggenomic DNA52256A,54M,58I,71D,83M,92P,107S,120S,124V,128D,148V,169F,171A,178T,180D,200S,208G
AM085051CgAS20gRepublic of the Conggenomic DNA922611T,26A,27I,41T,54M,58I,71D,91A,92P,120S,148V,169F,178T,203R,208G,210S
AM085052CgAS23gRepublic of the Conggenomic DNA52266A,14P,15M,31G,41T,54M,58I,87Q,91FI,92P,96I,107S,110N,115IM,116T,120S,135V,148V,160S,169F,171A,178T,180D,200S,207T,208G,225S
AM085071CgCHU02gRepublic of the Conggenomic DNA52056V,14P,15L,41T,71D,83I,86Q,87Q,96I,107A,110N,116R,120S,148V,169F,178T,187D,203R,204G
AM085069CgCHU04gRepublic of the Conggenomic DNA922714S,26A,27I,30R,36I,54M,58V,71D,79D,92P,115V,120S,124V,128D,131R,148V,154K,169F,178T,180D,187D,191I,203R,204G,207Q,208G
AM085070CgCHU06gRepublic of the Conggenomic DNA1621671D,83I,86P,87Q,96I,98D,116R,120S,148V,169F,178T,180D,199R,210S
AM085053CgCHU07gRepublic of the Conggenomic DNA62236A,27I,33N,41T,50PQ,71D,83L,91V,96L,120S,148V,180D,207T,208G
AM085073CgCHU09gRepublic of the Conggenomic DNA52276A,9H,14S,15L,41T,54M,58I,71D,83T,86I,87Q,91L,92P,96I,120S,135V,148V,169F,171V,178T,200S,208G
AM085054CgCHU10gRepublic of the Conggenomic DNA32186A,14S,15M,16T,26A,27I,54M,58I,71D,83T,86T,87Q,91F,92P,96L,116T,120S,148V,169F,180D,208G,210N
AM085055CgCHU11gRepublic of the Conggenomic DNA22196A,71D,86P,87Q,92P,96I,116T,148V,169F,178T,183G,187D,203R,208G
AM085056CgCHU12gRepublic of the Conggenomic DNA52156A,14S,26A,27I,41T,54M,58K,71D,78AV,83T,86AV,87Q,91Y,92P,96L,98D,120S,135V,148V,169F,178T,200S,203R,208G
AM085074CgCHU13gRepublic of the Conggenomic DNA12166A,11I,71D,83L,86P,87Q,92P,96I,116T,148V,154KR,169F,178T,183G,187D,203R,208G
AM085057CgCHU14gRepublic of the Conggenomic DNA52186A,59I,71D,83I,86P,87Q,91F,92P,96I,98D,116R,120S,128D,132G,148V,169F,178T,204G,207Q,208G
AM085058CgCHU15gRepublic of the Conggenomic DNA52186A,14S,15V,27I,54M,58I,71D,83A,92P,115V,120S,124V,131R,148V,169F,171A,178T,180D,200S,207T,208G
AM085076CgCHU18gRepublic of the Conggenomic DNA922010R,14P,15V,23*EKQ,26A,27I,30R,31S,41T,54M,58I,59I,60K,71D,79D,80*EKQ,83A,92P,101R,116D,120S,135V,137R,148V,156R,169F,178T,184*EKQ,203R,204S,208E
AM085077CgCHU19gRepublic of the Conggenomic DNA822115L,33N,36I,54S,58A,78AV,83M,91V,120S,128D,148V,154K,160S,178T,194S,208G,210S
AM085078CgCHU27gRepublic of the Conggenomic DNA721627I,33N,83L,87Q,96I,116T,148V,201L,208G
AM085079CgCHU28gRepublic of the Conggenomic DNA52276A,14P,71D,83IL,86P,87Q,92P,96I,98DE,107S,110N,116R,120S,148V,169F,171A,178T,183G,200S,203R,207Q,208G
AM085059CgCHU29gRepublic of the Conggenomic DNA12296M,27I,83L,91A,116A,120S,148V,154K,178T,225S
AM085080CgCHU30gRepublic of the Conggenomic DNA52236A,11T,14N,15M,27I,54M,58I,71D,92P,120S,128D,148V,169F,178T,200S,203R,207S,208G
AM085081CgCHU31gRepublic of the Conggenomic DNA522615IL,27I,83L,86A,87Q,91V,96V,116A,120H,148V,154K,178T,208AP,225S
AM085082CgCHU32gRepublic of the Conggenomic DNA52216A,15V,27I,54M,58I,71D,83AITV,92P,120G,124V,131R,148V,169F,178T,200A,207T,208G,210S
AM085084CgCHU34gRepublic of the Conggenomic DNA52266A,27I,71D,83I,86P,87Q,92P,96I,110N,116R,120S,128D,148V,169F,178T,183G,203R,208G,225S
AM085085CgCHU35gRepublic of the Conggenomic DNA52076L,15L,27I,33N,36I,83L,91N,92P,93A,116A,120S,148V,177C,178T,187D
AM085060CgCHU37gRepublic of the Conggenomic DNA1022814S,15L,41T,54M,58I,71D,83T,86I,87Q,91Y,92P,93A,96L,120S,135V,148V,169F,171A,178T,180D,200S,208G,225S
AM085086CgCHU40gRepublic of the Conggenomic DNA22186V,11I,12Y,14H,15M,27I,41T,54M,58I,71D,79D,83L,87P,91L,92P,93A,96L,111P,116A,148V,154K,169F,178T,183G,191I,200S,203R,208G
AM085088CgCHU45gRepublic of the Conggenomic DNA52266A,27I,41T,54M,58I,71D,86I,91A,92P,120G,124V,135V,148V,169F,178T,187D,208G,225S
AM085089CgCHU46gRepublic of the Conggenomic DNA1421815L,27I,71D,116AG,120G,148V,169F,171A,178T,180D,187D,207S,208G
AM085061CgCHU47gRepublic of the Conggenomic DNA52266A,71D,83M,86R,87Q,96I,100N,107S,116R,120S,148V,169F,171A,178T,180D,187DE,200Q,207T,208G,225S
AM085090CgCHU50gRepublic of the Conggenomic DNA52236A,27I,41T,45D,54M,58I,59I,71D,77I,83T,91A,92P,120S,124V,148V,154K,169F,178T,183V,187D,191I,208G
AM085062CgCHU53gRepublic of the Conggenomic DNA52266L,27I,83L,87Q,91V,98D,120S,148V,180D,191I,205M,208G,217AT
AM085092CgCHU56gRepublic of the Conggenomic DNA52116A,14P,71D,75DE,83IM,86PQ,87Q,96I,98D,116R,148V,169F,180D,183DGNS,187D,203R,208G
AM085093CgCP03gRepublic of the Conggenomic DNA52156L,33N,54S,58A,64G,92Q,120S,148V,154K,177G,201L,208G
AM085096CgCP07gRepublic of the Conggenomic DNA921214S,15IV,54A,58I,71D,83L,92P,110N,115IV,116A,120GS,124V,128D,148V,154K,169F,175KQ,178T,183AG,187D,203R,208G,210S,211I
AM085097CgCP09gRepublic of the Conggenomic DNA52156A,14S,15V,27I,54M,58I,71D,92P,120S,124V,131R,148V,169F,171A,178T,180D,200S,203R,207T,208G
AM085098CgCP11gRepublic of the Conggenomic DNA12076A,27I,30R,41T,54M,58I,71D,79D,83T,87Q,92P,96I,110N,116T,128D,148V,169F,180D,187D,203R
AM085064CgCP12gRepublic of the Conggenomic DNA52186A,10P,27I,41T,54L,71D,72A,83T,86Q,87Q,92P,96I,116T,120G,148V,169F,178T,187D,203R,208G
AM085099CgCP13gRepublic of the Conggenomic DNA12236A,41T,54M,58I,71D,83T,87Q,92P,96I,98D,107S,116T,120A,135V,148V,169F,171A,178T,180D,200S,207A,208G
AM085100CgCP14gRepublic of the Conggenomic DNA52056A,9HQ,11IV,14AS,71D,83L,86P,87Q,91L,92P,96I,115V,116A,120G,148V,169F,180DE,183DGNS,187D,203R
AM085065CgCP15gRepublic of the Conggenomic DNA2022026A,27I,41T,54M,58I,71D,83L,86A,87Q,92P,96I,98D,148V,169F,178T,187D,200S,203R,208G
AM085101CgCP19gRepublic of the Conggenomic DNA52186A,13N,14P,15L,41T,54M,58I,71D,83T,92P,120S,148V,169F,171V,178T,204S,207T,208G
AM085066CgGB04gRepublic of the Conggenomic DNA722327I,36I,41T,54S,58I,71D,72A,83M,86P,87Q,96I,110NS,116R,120S,148V,169F,178T,187D,203R,208G
AM085067CgOS04gRepublic of the Conggenomic DNA12306A,14N,15L,26A,27I,54M,58I,71D,83T,87Q,92P,96L,115V,120S,131R,148V,154K,169F,171V,178T,187D,200S,207S,208G,210S,225S
AM085104CgOS08gRepublic of the Conggenomic DNA821127I,44A,45D,71D,83T,92P,116Q,120S,124V,148V,154K,169F,178T,187D,208G
AM085105CgOS12gRepublic of the Conggenomic DNA922314AP,15M,27I,41T,54M,58I,71D,83L,92P,110N,120S,128D,135V,148V,154K,169F,171V,178T,180D,203R
AM085068CgOS15gRepublic of the Conggenomic DNA52266T,14S,15L,27I,41T,54M,58I,71D,83T,91V,92P,120S,124V,135V,148V,169F,178T,200S,207V,208G
AM085095CgP06gRepublic of the Conggenomic DNA52186A,11I,14P,26A,31S,44A,54V,58I,71D,83I,86P,87Q,92P,96I,98D,116R,120S,128D,148V,169F,178ST,183G,187D,199R,200N,203R,208G,210S

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