<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Baker (2016) HIV Subtypes Distribution and Implication for Antiretroviral Treatment in a Ugandan Population J Int Assoc Physicians AIDS Care 6, 260-263 (2007) 2.21e-166 50 50 Naive Plasma Direct PCR Molecular epidemiology

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AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
EF186151MBA1013-090805Ugandagenomic RNAplasma12316L,14T,15L,27I,45N,54D,83L,87Q,110S,116Q,120S,148V,180D,191I,208G
EF186152MBA1021-170805Ugandagenomic RNAplasma12316A,11I,14S,15L,27I,54M,58I,71D,83L,87Q,92P,111P,116R,120S,128D,148V,154K,165M,169F,178T,183S,204S,208G
EF186153MBA1023-180805Ugandagenomic RNAplasma12316A,15V,26A,27I,36I,41T,45D,54M,58I,83L,91V,96L,110N,116A,128D,148V,154K,180D,225S
EF186154MBA1028-230805Ugandagenomic RNAplasma12316A,11I,14P,15M,16T,27I,31G,33K,54L,58I,71D,83L,86A,87Q,91F,92P,93A,96I,110N,116A,120G,128D,146C,148V,153V,154K,169F,171I,178T,183G,191I,207S,208G,211I,225S
EF186155MBA1030-240805Ugandagenomic RNAplasma12316L,27I,36IV,86A,87Q,91V,96I,98D,116T,120NS,148V,180D,208AG,225S
EF186156MBA1035-310805Ugandagenomic RNAplasma12316A,9H,14S,15P,27I,31G,48A,54M,58I,59MV,71D,83L,86I,91N,92P,111IL,120S,128D,148V,154K,169F,178T,183G,191I,200S,203R,207A,208G
EF186157MBA1037-060905Ugandagenomic RNAplasma12316A,11I,14T,15L,27I,47C,54M,58I,75D,83L,92P,97K,111I,120S,128D,131R,148V,154K,169F,171C,180D,183S,190M,191I,200S,203R,207T,208G,225GS
EF186158MBA1039-190905Ugandagenomic RNAplasma12316L,11I,27I,54G,58A,75D,83L,91T,120S,148V,154K,160T,187D,208G,225S
EF186159MBA1040-190905Ugandagenomic RNAplasma12312L,6L,27I,41T,83L,91V,148V,180D,208G
EF186160MBA1043-200905Ugandagenomic RNAplasma12316L,27I,41T,71D,83L,87P,91V,98D,116A,120S,124V,128D,148V,154K,169F,178T,180D,203R,225S
EF186161MBA1044-200905Ugandagenomic RNAplasma12316L,10K,27I,58A,71D,83L,87P,96I,98D,110N,116T,118I,120G,148V,180D,187D,208G,210S
EF186162MBA1047-041005Ugandagenomic RNAplasma12316A,12Y,14T,15L,27I,54M,58I,71D,83L,91V,111P,115L,116A,118I,120G,128D,148V,154K,162K,169F,171A,178T,183G,200S,203R,207T,208G,216I,225S
EF186163MBA1048-051005Ugandagenomic RNAplasma12316A,11A,15V,31G,54M,58I,71D,83I,87Q,111I,116AG,120S,128D,148V,180D,187Q,200A,203R,208G
EF186164MBA1050-171005Ugandagenomic RNAplasma12316L,27I,91N,92P,116A,120S,148V,180D,225S
EF186165MBA1051-201005Ugandagenomic RNAplasma12316L,27I,83L,87Q,98D,116N,120S,148V,158R,180D,225S
EF186166MBA1053-201005Ugandagenomic RNAplasma12316A,11I,15V,27I,54M,58I,71D,83L,86A,87Q,96I,111P,115V,116A,120G,128D,148V,154K,169F,178T,200S,207T,208G,210S,225S
EF186167MBA1055-261005Ugandagenomic RNAplasma12316L,14P,27I,44A,50S,54L,79D,83L,87Q,91L,112A,116A,120S,148V,171C,180D,199R,225S
EF186168MBA1059-081105Ugandagenomic RNAplasma12316M,14P,17A,41T,83L,91V,94N,120S,148V,178T,200S,208G,225S
EF186169MBA1060-091105Ugandagenomic RNAplasma12316A,11I,14S,15L,27I,31G,48I,54M,58I,71D,83L,87Q,92P,96L,120S,128D,148V,154K,169F,178T,180D,187D,200S,203R,207A,208G
EF186170MBA1064-141105Ugandagenomic RNAplasma12316L,27I,41T,83L,115V,116A,120S,124V,148V,180D,225S
EF186171MBA1066-151105Ugandagenomic RNAplasma12316A,11M,14S,15L,26A,27I,30R,31G,50G,54M,58I,71D,83L,87Q,91V,92P,111P,116A,120S,124V,128D,148V,154K,169F,180D,183GS,187D,200S,203R,208G,210ST,225S
EF186172MBAR005-120405Ugandagenomic RNAplasma12316A,11I,14S,15L,27I,41T,50G,54M,58I,71D,79D,83L,91V,111T,116A,120G,131R,148V,154K,169F,171V,180D,183G,203R,207T,208G,225S,230I
EF186173MBAR006-120405Ugandagenomic RNAplasma12316L,15L,27I,41T,83T,86M,87Q,91L,116A,148V,183GS,187D,208G,225S
EF186174MBAR007-120405Ugandagenomic RNAplasma12313M,6A,11T,12Y,15L,27I,33N,54M,58V,71D,83T,86A,87Q,91F,92P,96L,111V,115M,120S,131R,148V,169F,178T,200S,203R,208G
EF186175MBAR012-140405Ugandagenomic RNAplasma12316A,12N,15L,54M,58V,71D,83L,92P,120G,123S,128D,131R,148V,154K,169F,180D,203R,208G,225S
EF186176MBAR016-020505Ugandagenomic RNAplasma12316A,15L,27I,30R,31G,54M,58I,71D,79D,83L,92P,111P,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G
EF186177MBAR019-260505Ugandagenomic RNAplasma12312V,6A,12Y,14S,15L,16Q,27I,31G,33N,47S,54M,58V,71D,83L,86A,92Q,96L,110N,111V,115V,120S,128D,131R,148V,154K,169F,178T,180D,200A,203R,207A,208G
EF186091P0006-120105Ugandagenomic RNAplasma12316L,15L,16T,27I,83L,115V,116A,120A,148V,178T,190M,225S
EF186092P0010-170105Ugandagenomic RNAplasma12316L,27I,50G,58S,83L,87Q,91V,120S,148V,154K,225S
EF186093P0018-240105Ugandagenomic RNAplasma12312V,6A,11T,12Y,15L,16T,21G,27I,31N,44A,71D,83L,86A,87Q,92P,120S,129X,130X,131X,132X,133X,134X,135X,135X_X,136LMV,148V,169F,178T,180D,187D,203R,208G,210S
EF186094P0020-240105Ugandagenomic RNAplasma12316A,11I,14S,15L,27I,31G,54M,58I,71D,83L,92P,111P,128D,148V,154K,169F,178T,194S,200S,207S,208G
EF186095P0032-090205Ugandagenomic RNAplasma12316L,15L,27I,33N,83L,91V,116A,120S,124V,148V,178T,180D,183Q,208G,225S
EF186096P0034-090205Ugandagenomic RNAplasma12274T,6A,11I,12Y,15L,27I,54M,58V,71D,83I,92P,96I,111A,116A,120G,124V,131R,148V,154X,157X,160X,169F,178T,200S,203R,208G,227RS
EF186097P0040-160205Ugandagenomic RNAplasma12316A,11I,14V,15M,31G,54M,58I,71D,79DE,83LM,84N,87HR,98D,111P,116A,120S,128D,148V,154K,169F,171I,180D,183S,204G,207R,208G,210S,230I
EF186098P0041-160205Ugandagenomic RNAplasma12316A,15V,27I,54M,58I,71D,83L,92P,111I,120S,128D,148V,154K,163E,169F,178T,180D,203R,207A,208G,225S
EF186099P0042-160205Ugandagenomic RNAplasma12316A,30R,31G,54M,58I,59I,71D,83L,92P,102G,111I,118I,120S,128D,148V,154K,169F,180D,183G,187D,200S,203R,208G
EF186100P0043-160205Ugandagenomic RNAplasma12316L,15L,27I,50G,59I,83L,87Q,120S,148V,154K,178T,225S
EF186101P0060-070305Ugandagenomic RNAplasma12316A,11I,12Y,14S,15L,27I,48A,54M,58I,71D,83L,87Q,96L,111P,116A,120A,128D,148V,154K,169F,178T,183G,191I,200G,203R,207T,208G,225S
EF186102P0062-070305Ugandagenomic RNAplasma12316L,14P,15L,27I,33NS,41T,50SY,83M,91H,92P,120S,148V,154K,180D,194S,208G,225S
EF186103P0071-090305Ugandagenomic RNAplasma12316A,11I,14S,15L,27I,54M,58V,71D,111P,116A,120G,128D,148V,154K,169F,171C,178T,183G,200AS,203R,225S
EF186104P0076-140305Ugandagenomic RNAplasma12316L,14P,15L,27I,41T,83L,86P,87Q,96I,110N,116A,120S,148V,180D,199R,225S
EF186105P0079-160305Ugandagenomic RNAplasma12316A,15L,27I,54M,58V,71D,83I,92P,96L,111P,120G,128D,148V,154K,169F,171A,178T,180D,187D,200S,208G
EF186106P0086-230305Ugandagenomic RNAplasma12316L,27I,91V,96I,110N,116T,120S,148V,154K,171I,180D,183NT,225S
EF186107P0094-300305Ugandagenomic RNAplasma12316L,14P,15L,17A,27I,31N,41T,71D,83L,116A,120S,124V,128DE,148V,169F,178T,180D,187D,203R,208G,210S,225S
EF186108P0110-120405Ugandagenomic RNAplasma12316A,11T,13N,14P,15L,27I,30R,31G,54M,58I,71D,83L,92P,111V,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G
EF186109P0166-250505Ugandagenomic RNAplasma12316A,11I,14P,15L,27I,30R,31G,54M,58I,71D,79D,83L,87Q,92P,111P,148V,154K,169F,178T,183G,200S,203R,207S,208G,210S
EF186110P0169-300505Ugandagenomic RNAplasma12312V,6L,12Y,14T,15L,27I,31G,33N,41T,54S,58I,83M,91V,111P,120S,148V,171V,180D,207Q,208G,216S,225S
EF186111P0218-130705Ugandagenomic RNAplasma12316A,10P,15L,33N,54V,58V,71D,83L,92P,96IM,120G,131R,148V,169F,171V,200S,203R,207A,208G,225S
EF186112P0219-130705Ugandagenomic RNAplasma12316V,15M,16T,27I,44A,50G,54L,58I,83L,111I,116A,118I,120G,148V,180D,225S
EF186113P0281-050905Ugandagenomic RNAplasma12316L,14P,27I,71D,83L,96X,107P,120T,121I,128D,148V,180D,208G,224T,225R

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