Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Yao (2015)	Trends of subtype variation of human immunodeficiency virus type 1 in Zhejiang Province, China	Virus Genes 50 (1), 22-28 (2015)	1.25e-153	156	451	Naive	Plasma	Direct PCR	Molecular epidemiology

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Accession	IsolateName	Country	Coll Date	MolType	Note	FirstAA	LastAA	MutList
KJ613792	2006_Zhejiang_HZ2006129_Blood	China	2006	genomic RNA	subtype: B	1	209	6L,14P,16T,41T,83L,91V,110N,120S,180D,194S
KJ613853	2007_Zhejiang_HuZZJ070501_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15V,31G,33N,54M,58I,92P,128D,148V,178T,200S,207T,208G
KJ613828	2007_Zhejiang_HZ2007030_IDU	China	2007	genomic RNA	subtype: CRF08_BC	1	209	14P,15L,41T,71D,83L,87Q,91V,124V,154K,169F,178T,180D,187D,194S,203R,208G
KJ613832	2007_Zhejiang_HZ2007214_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,31G,33N,54M,58I,92P,128D,148V,178T,200S,207T,208G
KJ613833	2007_Zhejiang_HZ2007301_MSM	China	2007	genomic RNA	subtype: B	1	209	6L,15L,41T,83L,86A,87Q,91V,110S,120S,154K,180D
KJ613834	2007_Zhejiang_HZ2007313_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,31G,33N,54M,58I,59M,92P,128D,148V,178T,200S,207Q,208G
KJ613835	2007_Zhejiang_HZ2007316_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,31G,33N,54M,58I,92P,120G,123V,128D,178T,200S,207T,208G
KJ613836	2007_Zhejiang_HZ2007319_Blood	China	2007	genomic RNA	subtype: B	1	209	6L,14P,41T,83L,91V,128D,148A,180D,194S,208G
KJ613837	2007_Zhejiang_HZ2007324_MSM	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,31G,33N,54M,58I,79D,83T,92P,96I,116A,128D,148V,178T,204S,207T,208G
KJ613838	2007_Zhejiang_HZ2007325_MSM	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,31G,33N,54M,58I,79D,83T,92P,116A,128D,148V,178T,204S,207T,208G
KJ613839	2007_Zhejiang_HZ2007326_MSM	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,31G,33N,54M,58I,79D,83T,92P,116A,128D,148V,178T,204S,207T,208G
KJ613840	2007_Zhejiang_HZZJ070101_HTS	China	2007	genomic RNA	subtype: CRF08_BC	1	209	6L,14P,15L,41T,71D,83L,87Q,91A,120S,154K,169F,171I,178T,180D,187D,203R
KJ613841	2007_Zhejiang_HZZJ070102_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,31G,33N,54M,58I,79D,83T,92P,96I,116A,128D,148V,154K,178T,204S,207I,208G
KJ613842	2007_Zhejiang_HZZJ070105_MSM	China	2007	genomic RNA	subtype: CRF07_BC	1	209	14P,68I,71D,83L,86I,91A,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G
KJ613843	2007_Zhejiang_HZZJ070107_MSM	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15V,31G,33N,54M,58I,79D,83A,87Q,92P,96I,116A,128D,148V,178T,200S,207T,208G
KJ613844	2007_Zhejiang_HZZJ070109_HTS	China	2007	genomic RNA	subtype: CRF08_BC	1	209	6L,14P,15L,41T,71D,83L,91V,128D,154K,169F,178T,180D,187D,203R,208G
KJ613845	2007_Zhejiang_HZZJ070110_MSM	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,116A,128D,148V,178T,200S,207T,208G
KJ613846	2007_Zhejiang_HZZJ070112_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,27I,31G,33N,45D,54M,58I,64G,92P,128D,148V,149G,154K,178T,200S,207T,208G
KJ613847	2007_Zhejiang_HZZJ070113_HTS	China	2007	genomic RNA	subtype: B	1	209	6L,14P,41T,83L,120S,180D,199R
KJ613848	2007_Zhejiang_HZZJ070114_MSM	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,15V,31G,33N,54M,58I,83T,86I,87Q,92P,96I,116A,128D,148V,149G,178T,200S,207T,208G
KJ613849	2007_Zhejiang_HZZJ070118_MSM	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,31G,33N,54M,58I,79D,83T,92P,116A,128D,148V,178T,204S,207T,208G
KJ613850	2007_Zhejiang_HZZJ070121_HTS	China	2007	genomic RNA	subtype: B	1	209	6L,14P,83L,91V,98D,120S,123A,180D,194S
KJ613851	2007_Zhejiang_HZZJ070122_HTS	China	2007	genomic RNA	subtype: CRF08_BC	1	209	6L,14P,15L,41T,71D,83L,91V,120S,154K,169F,178T,180D,187D,203R,208G
KJ613855	2007_Zhejiang_JH2007279_MSM	China	2007	genomic RNA	subtype: B	1	209	6L,14P,44A,83M,98D,120S,148V,180D
KJ613856	2007_Zhejiang_JH2007286_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14S,31G,33N,54M,58I,87Q,92P,115V,120S,128D,148V,178T,200S,207T,208G
KJ613857	2007_Zhejiang_JH2007287_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14S,31G,33N,54M,58I,86A,87Q,92P,115V,120S,128D,148V,178T,200S,207T,208G
KJ613858	2007_Zhejiang_JH2007290_IDU	China	2007	genomic RNA	subtype: CRF07_BC	1	209	6L,14P,15L,68I,71D,83L,116A,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G
KJ613859	2007_Zhejiang_JH2007291_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,31G,33N,54M,58I,92P,110N,128D,148V,178T,200S,207T,208G
KJ613860	2007_Zhejiang_JHZJ070701_HTS	China	2007	genomic RNA	subtype: CRF07_BC	1	209	6L,14P,68I,71D,83L,110N,116N,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G
KJ613861	2007_Zhejiang_JHZJ070706_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,204S,207T,208G
KJ613862	2007_Zhejiang_JHZJ070709_IDU	China	2007	genomic RNA	subtype: CRF07_BC	1	209	6L,14P,15L,71D,83L,116A,120G,124V,128D,154K,169F,178T,187D,203R,208G
KJ613866	2007_Zhejiang_JX2007058_IDU	China	2007	genomic RNA	subtype: CRF08_BC	1	209	6L,14P,15L,41T,71D,83L,87Q,91V,98D,120S,121T,154K,169F,178T,180D,187D,203R
KJ613867	2007_Zhejiang_JX2007073_HTS	China	2007	genomic RNA	subtype: CRF07_BC	1	209	6L,15L,68I,71D,83L,86I,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G
KJ613868	2007_Zhejiang_JX2007293_HTS	China	2007	genomic RNA	subtype: CRF07_BC	1	209	6L,14P,41T,68I,71D,83L,110N,116A,120S,124V,128D,141V,154K,169F,178T,180D,187D,203R,208G
KJ613869	2007_Zhejiang_JXZJ070405_Blood	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15V,31G,33N,54M,58I,92P,110N,120S,128D,148V,178T,200S,207T,208G
KJ613870	2007_Zhejiang_JXZJ070407_HTS	China	2007	genomic RNA	subtype: B	1	209	6L,14P,44A,71D,83L,91V,148V,162K,180D
KJ613871	2007_Zhejiang_JXZJ070408_HTS	China	2007	genomic RNA	subtype: CRF08_BC	1	209	6L,14P,15L,41T,71D,83L,87Q,91A,120S,154K,169F,171A,178T,180D,187D,203R,204G,207T,208G
KJ613872	2007_Zhejiang_JXZJ070409_HTS	China	2007	genomic RNA	subtype: CRF08_BC	1	209	6L,14P,41T,71D,83L,87Q,91V,92P,96I,116A,120S,124V,154K,169F,171V,180D,187D,203R
KJ613873	2007_Zhejiang_JXZJ070410_MSM	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,31G,33N,54M,58I,79D,83T,92P,96I,110N,116A,128D,148V,178T,200S,203R
KJ613874	2007_Zhejiang_JXZJ070411_UN	China	2007	genomic RNA	subtype: B	1	209	6L,14P,17A,83L,91V,128D,136M,148V,180D
KJ613875	2007_Zhejiang_JXZJ070412_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15V,31G,33N,54M,58I,68I,72V,79D,83T,92P,96I,116A,121T,128D,148V,178T,200S,207T,208G
KJ613876	2007_Zhejiang_JXZJ070413_HTS	China	2007	genomic RNA	subtype: B	1	209	2V,6L,14P,41T,83L,91V,180D
KJ613877	2007_Zhejiang_LSZJ071101_HTS	China	2007	genomic RNA	subtype: CRF07_BC	1	209	68I,71D,116A,120S,121T,124V,154K,169F,178T,180D,187D,203R,208G
KJ613878	2007_Zhejiang_LSZJ071102_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,13N,14P,15V,31G,33N,58I,83L,92P,128D,136M,146K,148V,154K,178T,200S,207A,208G
KJ613879	2007_Zhejiang_LSZJ071103_Blood	China	2007	genomic RNA	subtype: CRF07_BC	1	209	68I,71D,116A,120S,121T,124V,154K,169F,178T,180D,187D,203R,208G
KJ613880	2007_Zhejiang_NB2007081_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15V,31G,33N,54M,58I,92P,120S,123A,128D,148V,149G,178T,200S,207S,208G
KJ613881	2007_Zhejiang_NB2007082_HTS	China	2007	genomic RNA	subtype: CRF08_BC	1	209	6P,14P,41T,71D,83L,91V,110S,154K,169F,178T,180D,187D,203R,207A,208G
KJ613882	2007_Zhejiang_NB2007083_HTS	China	2007	genomic RNA	subtype: CRF08_BC	1	209	6A,14P,41T,71D,83L,91V,154K,169F,178T,179R,180D,187D,203R,208G
KJ613883	2007_Zhejiang_NB2007385_HTS	China	2007	genomic RNA	subtype: CRF08_BC	1	209	6L,14P,15L,41T,71D,83L,91V,120S,154K,169F,178T,180D,187D,203R
KJ613884	2007_Zhejiang_NB2007387_MSM	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,31G,33N,54M,58I,79D,83T,92P,96I,116A,128D,148V,178T,204S,207T,208G
KJ613885	2007_Zhejiang_NB2007389_MSM	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,116A,128D,148V,178T,200S,207T,208G
KJ613886	2007_Zhejiang_NBZJ070202_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,31G,33N,54M,58I,92P,120G,123S,128D,148V,178T,200S,207T,208G
KJ613887	2007_Zhejiang_NBZJ070206_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15V,31G,33N,54M,58I,79D,83T,92P,96I,116A,128D,148V,154K,178T,204S,207T,208G
KJ613888	2007_Zhejiang_NBZJ070207_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,31G,33N,54M,58I,83I,92P,120G,128D,148V,178T,200S,207T,208G
KJ613889	2007_Zhejiang_NBZJ070262_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,31G,33N,54M,58I,92P,128D,148V,149G,178T,200S,207T,208G
KJ613891	2007_Zhejiang_QZ2007061_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,207V,208G
KJ613892	2007_Zhejiang_QZ2007123_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,31G,33N,54M,58I,79D,83A,92P,128D,148V,178T,200S,203R,208G
KJ613893	2007_Zhejiang_QZ2007124_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,31G,33N,54M,58I,92P,128D,148V,178T,200S,207T,208G
KJ613894	2007_Zhejiang_QZZJ070801_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15V,31G,33N,54M,58I,92P,121T,128D,148V,178T,200S,207T,208G
KJ613895	2007_Zhejiang_QZZJ070802_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6V,15M,31G,33N,54M,58I,79D,83A,92P,128D,148V,178T,200S,203R,208G
KJ613900	2007_Zhejiang_SX2007109_IDU	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,31G,33N,54M,58I,59I,91N,92P,104V,107I,120S,128D,148V,178T,199R,200S,207T,208G
KJ613901	2007_Zhejiang_SX2007110_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,31G,33N,54M,58I,92P,128D,148I,178T,200S,207T,208G
KJ613902	2007_Zhejiang_SX2007278_MSM	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,23,31G,33N,54M,58I,60E,79D,80,83T,92P,96I,97K,100K,116A,117,128D,148V,156R,178T,184,204S,206R,207T,208G
KJ613903	2007_Zhejiang_SXZJ070607_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,31G,33N,54M,58I,92P,128D,148I,178T,200S,207S,208G
KJ613904	2007_Zhejiang_SXZJ070610_HTS	China	2007	genomic RNA	subtype: CRF07_BC	1	209	6L,14P,44A,68I,71D,83L,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G
KJ613905	2007_Zhejiang_SXZJ070612_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,31G,33N,54M,58I,92P,128D,148V,178T,200S,207T,208G
KJ613906	2007_Zhejiang_TZ2007304_HTS	China	2007	genomic RNA	subtype: CRF08_BC	1	209	6L,14P,41T,71D,83L,91V,96V,120S,154K,169F,178T,180D,187D,203R,208G
KJ613907	2007_Zhejiang_TZ2007306_IDU	China	2007	genomic RNA	subtype: CRF07_BC	1	209	6L,14P,41T,68I,71D,82K,83L,91N,92P,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G
KJ613908	2007_Zhejiang_TZ2007307_HTS	China	2007	genomic RNA	subtype: CRF08_BC	1	209	6L,14P,15L,41T,71D,83I,91A,120A,169F,178T,180D,187D,203R,208G
KJ613909	2007_Zhejiang_TZZJ071001_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,31G,33N,54M,58I,83I,92P,110N,120G,123V,128D,148V,178T,200S,207T,208G
KJ613910	2007_Zhejiang_TZZJ071002_HTS	China	2007	genomic RNA	subtype: C	1	209	6L,14P,41T,71D,83L,91V,116A,120G,124V,154K,169F,178T,180D,187D,200I,203R,204G,208G
KJ613911	2007_Zhejiang_TZZJ071003_HTS	China	2007	genomic RNA	subtype: B	1	209	6L,14P,41T,79D,83L,91A,120S,148S,180D,199R
KJ613912	2007_Zhejiang_TZZJ071004_HTS	China	2007	genomic RNA	subtype: B	1	209	6L,15L,41T,68I,79D,83L,91V,120S,123A,148S,180D,208G
KJ613913	2007_Zhejiang_TZZJ071005_HTS	China	2007	genomic RNA	subtype: CRF07_BC	1	209	6L,14P,68I,71D,83L,116A,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G
KJ613914	2007_Zhejiang_TZZJ071006_HTS	China	2007	genomic RNA	subtype: CRF07_BC	1	209	6L,14P,41T,68I,71D,83L,91A,96V,116A,120G,124V,128D,154K,169F,178T,187D,203R,208G
KJ613915	2007_Zhejiang_TZZJ071007_HTS	China	2007	genomic RNA	subtype: CRF07_BC	1	209	6L,14P,68I,71D,83L,116T,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G
KJ613916	2007_Zhejiang_TZZJ071009_HTS	China	2007	genomic RNA	subtype: CRF07_BC	1	209	6L,15L,68I,71D,83L,110N,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G
KJ613917	2007_Zhejiang_WZ07ZJD0360_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,207T,208G
KJ613918	2007_Zhejiang_WZ07ZJD0361_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15V,31G,33N,54M,58I,92P,120S,123A,128D,148V,178T,186I,200S,207T,208G
KJ613919	2007_Zhejiang_WZ2007221_HTS	China	2007	genomic RNA	subtype: B	1	209	6L,15M,16T,44A,68I,83L,91V,96L,148V,180D
KJ613920	2007_Zhejiang_WZ2007224_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15V,31G,33N,54M,58I,92P,120S,123A,128D,148V,178T,200S,207T,208G
KJ613921	2007_Zhejiang_WZZJ070301_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15V,31G,33N,54M,58I,78V,83T,92P,120S,123S,128D,148V,178T,200S,207T,208G
KJ613922	2007_Zhejiang_WZZJ070307_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,207T,208G
KJ613923	2007_Zhejiang_WZZJ070310_HTS	China	2007	genomic RNA	subtype: CRF08_BC	1	209	6H,14P,41T,71D,83L,86A,91V,154K,169F,171C,178T,180D,187D,203R,204G,207S,208G
KJ613924	2007_Zhejiang_WZZJ070314_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14S,15L,31G,33N,54M,58I,83L,92P,128D,148V,178T,200S,207T,208G
KJ613925	2007_Zhejiang_WZZJ070315_HTS	China	2007	genomic RNA	subtype: B	1	209	6L,14P,44A,83L,87Q,110N,116A,120G,123S,148V,180D
KJ613926	2007_Zhejiang_WZZJ070316_HTS	China	2007	genomic RNA	subtype: B	1	209	6L,14P,44A,83L,116A,120S,148V,180D
KJ613927	2007_Zhejiang_WZZJ070317_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,31G,33N,54M,58I,92P,128D,148V,178T,200S,207S,208G
KJ613930	2007_Zhejiang_ZS2007151_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,31G,33N,54M,58I,92P,128D,148V,178T,200S,207S,208G
KJ613931	2007_Zhejiang_ZS2007360_IDU	China	2007	genomic RNA	subtype: C	1	209	6L,27I,41T,71D,83L,116A,120S,121T,124V,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G
KJ613932	2007_Zhejiang_ZSZJ070905_HTS	China	2007	genomic RNA	subtype: CRF01_AE	1	209	6A,14S,15L,31G,33N,54M,58I,92P,124V,128D,148V,178T,200S,207T,208G
KJ613939	2008_Zhejiang_HuZ08ZJ095_HTS	China	2008	genomic RNA	subtype: CRF08_BC	1	209	6L,14P,15L,41T,71D,83L,87Q,91V,92P,107S,120S,124V,169F,178T,180D,187D,203R,208G
KJ613940	2008_Zhejiang_HuZ08ZJ096_HTS	China	2008	genomic RNA	subtype: CRF08_BC	1	209	6P,14P,15L,41T,71D,83L,87Q,96I,120H,154K,169F,178T,180D,187D,203R,207S,208G
KJ613933	2008_Zhejiang_HZ08ZJ111_HTS	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,31G,33N,54M,58I,92P,120S,148V,178T,187G,200S,203R
KJ613934	2008_Zhejiang_HZ08ZJ115_MSM	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6T,14P,15L,31G,33N,54M,58I,83I,92P,96V,116A,128D,148V,178T,200S,207T,208G
KJ613935	2008_Zhejiang_HZ08ZJ357_MSM	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15V,31G,33N,54M,58I,83T,87Q,92P,96I,116A,128D,148V,178T,200S,207T,208G
KJ613936	2008_Zhejiang_HZ08ZJ359_MSM	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15V,31G,33N,54M,58I,78V,83T,87Q,92P,96I,116A,128D,148V,178T,200S,207T,208G
KJ613937	2008_Zhejiang_HZ08ZJ360_MSM	China	2008	genomic RNA	subtype: CRF07_BC	1	209	6L,14P,68I,71D,83L,96I,116T,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G
KJ613938	2008_Zhejiang_HZ08ZJ371_MSM	China	2008	genomic RNA	subtype: B	1	209	6L,15L,27I,41T,68I,83L,91V,96L,120S,128D,180D,208G
KJ613941	2008_Zhejiang_JH08ZJ585_HTS	China	2008	genomic RNA	subtype: CRF08_BC	1	209	6L,14P,41T,71D,83L,91P,120S,128D,154K,169F,178T,180D,187D,203R,208G
KJ613942	2008_Zhejiang_JH08ZJ586_HTS	China	2008	genomic RNA	subtype: CRF08_BC	1	209	1S,6L,14P,23,41T,51N,52F,60K,71D,80,91V,100K,116R,120S,121T,127R,169F,178T,180D,187D,203R,208G
KJ613943	2008_Zhejiang_JH08ZJ592_HTS	China	2008	genomic RNA	subtype: B	1	209	6L,14P,83L,91V,180D
KJ613944	2008_Zhejiang_JH08ZJ819_HTS	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,31G,33N,54M,58I,92P,128D,148V,178T,200S,207T,208G
KJ613945	2008_Zhejiang_JH08ZJ820_HTS	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,31G,33N,54M,58I,83A,92P,128D,148V,178T,200S,207T,208G
KJ613946	2008_Zhejiang_JX08ZJ225_UN	China	2008	genomic RNA	subtype: CRF08_BC	1	209	6L,14P,15L,41T,71D,83L,87Q,91V,120S,123A,154K,169F,178T,180D,187D,200I,203R,204G,208G
KJ613947	2008_Zhejiang_JX08ZJ226_HTS	China	2008	genomic RNA	subtype: CRF08_BC	1	209	6L,14P,15L,41T,71D,83L,86A,87Q,91A,120S,154K,169F,178T,180D,187D,200I,203R,204G,208G
KJ613948	2008_Zhejiang_LS08ZJ213_HTS	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,14S,15L,31G,33N,54M,58I,83T,87Q,92P,120H,128D,148I,178T,200S,207T,208G
KJ613949	2008_Zhejiang_LS08ZJ522_UN	China	2008	genomic RNA	subtype: CRF08_BC	1	209	6L,14P,15L,41T,71D,83L,87Q,91V,120S,154K,169F,178T,180D,187D,203R,208G
KJ613950	2008_Zhejiang_LS08ZJ544_HTS	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,14S,15L,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,207I,208G
KJ613951	2008_Zhejiang_LS08ZJ548_UN	China	2008	genomic RNA	subtype: CRF08_BC	1	209	6L,14P,15L,41T,71D,83L,120S,154K,169F,178T,180D,187D,203R,208G
KJ613952	2008_Zhejiang_LS08ZJ552_IDU	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,31G,33N,54M,58I,92P,120S,123S,128D,148V,178T,200S,207T,208G
KJ613953	2008_Zhejiang_NB08ZJ198_UN	China	2008	genomic RNA	subtype: B	1	209	6L,14P,44A,71D,79D,83L,154K,180D
KJ613954	2008_Zhejiang_NB08ZJ845_HTS	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,14S,15L,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,207T,208G
KJ613955	2008_Zhejiang_NB08ZJ846_HTS	China	2008	genomic RNA	subtype: CRF07_BC	1	209	6L,14P,68I,71D,83L,116A,120S,124V,128D,169F,178T,180D,187D,203R,208G
KJ613956	2008_Zhejiang_NB08ZJ847_IDU	China	2008	genomic RNA	subtype: CRF07_BC	1	209	6L,14P,68I,71D,83L,116A,120S,124V,128D,169F,178T,180D,187D,203R,208G
KJ613957	2008_Zhejiang_QZ08ZJ072_HTS	China	2008	genomic RNA	subtype: CRF08_BC	1	209	6L,14P,41T,71D,91V,98D,120S,124V,169F,178T,180D,187D,203R,208G
KJ613958	2008_Zhejiang_QZ08ZJ074_HTS	China	2008	genomic RNA	subtype: CRF08_BC	1	209	6L,14P,41T,71D,91V,98D,120S,124V,169F,178T,180D,187D,203R,208E
KJ613959	2008_Zhejiang_SX08ZJ202_HTS	China	2008	genomic RNA	subtype: CRF08_BC	1	209	6L,14P,15L,41T,71D,83L,91V,120S,169F,178T,180D,187D,203R
KJ613960	2008_Zhejiang_SX08ZJ206_HTS	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,31G,33N,54M,58I,92P,96I,128D,148V,178T,200S,207T,208G
KJ613961	2008_Zhejiang_SX08ZJ227_HTS	China	2008	genomic RNA	subtype: CRF08_BC	1	209	6L,14P,15L,41T,71D,79D,83L,91V,120S,154K,169F,178T,180D,187D,203R,208G
KJ613962	2008_Zhejiang_SX08ZJ375_MSM	China	2008	genomic RNA	subtype: CRF07_BC	1	209	6L,15L,68I,71D,110N,116A,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G
KJ613963	2008_Zhejiang_SX08ZJ392_MSM	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,116A,128D,148V,178T,200S,207T,208G
KJ613964	2008_Zhejiang_TZ08ZJ004_HTS	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,178T,200S,207T,208G
KJ613965	2008_Zhejiang_TZ08ZJ011_HTS	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,31G,33N,54M,58I,92P,128D,148V,160S,178T,200S,207T,208G
KJ613966	2008_Zhejiang_TZ08ZJ012_HTS	China	2008	genomic RNA	subtype: CRF01_AE	1	207	6A,14S,15L,31G,33N,54M,58I,92P,128D,148V,178T,200S,207Q
KJ613967	2008_Zhejiang_TZ08ZJ013_HTS	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,31G,33N,54M,58I,92P,128D,148V,178T,200S,207Q,208G
KJ613968	2008_Zhejiang_TZ08ZJ049_HTS	China	2008	genomic RNA	subtype: B	1	209	6L,14P,44A,83M,120S,123S,148V,180D
KJ613969	2008_Zhejiang_TZ08ZJ443_HTS	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96L,116A,128D,148V,178T,191I,200S,207S,208G
KJ613970	2008_Zhejiang_TZ08ZJ444_HTS	China	2008	genomic RNA	subtype: BC	1	209	6L,14P,79D,83L,86A,87Q,96I,116T,180D
KJ613971	2008_Zhejiang_TZ08ZJ447_HTS	China	2008	genomic RNA	subtype: CRF07_BC	1	209	6L,14P,68I,71D,83L,87Q,91Y,92P,116A,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G
KJ613972	2008_Zhejiang_TZ08ZJ449_HTS	China	2008	genomic RNA	subtype: B	1	209	6L,14P,83L,91V,180D
KJ613973	2008_Zhejiang_TZ08ZJ451_MSM	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15V,31G,33N,54M,58I,79D,83T,92P,96I,104V,116A,128D,148V,178T,204S,207T,208G
KJ613974	2008_Zhejiang_TZ08ZJ454_HTS	China	2008	genomic RNA	subtype: B	1	209	6L,14P,83L,87Q,91V
KJ613975	2008_Zhejiang_TZ08ZJ455_HTS	China	2008	genomic RNA	subtype: B	1	209	6L,14P,83L,91V,180D
KJ613976	2008_Zhejiang_TZ08ZJ456_HTS	China	2008	genomic RNA	subtype: B	1	209	6L,14P,83L,91V,110N,180D
KJ613977	2008_Zhejiang_TZ08ZJ458_HTS	China	2008	genomic RNA	subtype: CRF07_BC	1	209	6L,15L,68I,71D,83L,110S,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G
KJ613978	2008_Zhejiang_TZ08ZJ460_HTS	China	2008	genomic RNA	subtype: B	1	209	6V,14P,83L,91V,180D
KJ613979	2008_Zhejiang_TZ08ZJ462_HTS	China	2008	genomic RNA	subtype: CRF08_BC	1	209	6L,14P,15L,41T,71D,83L,91V,110N,116N,120S,154K,169F,178T,180D,187D,200I,203R,204G,208G
KJ613980	2008_Zhejiang_TZ08ZJ464_HTS	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15V,31G,33N,54M,58I,92P,110N,120S,128D,148V,200S,207T,208G
KJ613981	2008_Zhejiang_TZ08ZJ466_Blood	China	2008	genomic RNA	subtype: B	1	209	6L,14P,83L,91V,180D
KJ613982	2008_Zhejiang_TZ08ZJ467_UN	China	2008	genomic RNA	subtype: BC	1	209	6L,14P,41T,79D,83L,91P,120S,148A,180D,199R
KJ613983	2008_Zhejiang_TZ08ZJ468_HTS	China	2008	genomic RNA	subtype: CRF08_BC	1	209	6L,14P,15L,41T,71D,83L,87P,91M,92P,96L,98D,110N,116Q,154K,169F,171A,178T,180D,187D,200A,207I,208G
KJ613984	2008_Zhejiang_TZ08ZJ469_HTS	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,207T,208G
KJ613985	2008_Zhejiang_TZ08ZJ472_HTS	China	2008	genomic RNA	subtype: B	1	209	6L,14P,44A,83L,91V,96L,120S,180D
KJ613986	2008_Zhejiang_TZ08ZJ474_HTS	China	2008	genomic RNA	subtype: C	1	209	6L,14P,27I,41T,71D,83L,91V,116A,120G,124V,128D,169F,178T,180D,187D,203R,207Q,208G
KJ613987	2008_Zhejiang_TZ08ZJ479_UN	China	2008	genomic RNA	subtype: CRF07_BC	1	209	6L,68I,71D,83L,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G
KJ613988	2008_Zhejiang_TZ08ZJ480_UN	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,31G,33N,54M,58I,92P,120S,128D,148I,178T,200S,207T,208G
KJ613989	2008_Zhejiang_TZ08ZJ481_UN	China	2008	genomic RNA	subtype: CRF07_BC	1	209	6L,8R,14P,15L,23,29K,46R,60R,68I,71D,80,83L,100K,116A,120G,124V,128D,154K,156R,169F,178T,180D,184*,187D,203R,206R,208E
KJ613990	2008_Zhejiang_TZ08ZJ763_HTS	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,31G,33N,54M,58I,92P,110N,120S,128D,178T,183Q,207T,208G
KJ613991	2008_Zhejiang_WZ08ZJ020_HTS	China	2008	genomic RNA	subtype: C	1	209	6L,14P,15L,27I,41T,71D,83L,86A,91V,110N,116A,120S,124V,128D,148V,169F,178T,180D,187D,203R,208G
KJ613992	2008_Zhejiang_WZ08ZJ024_HTS	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6T,14P,15L,31G,33N,54M,58I,92P,128D,148V,178T,200S,207S,208G
KJ613993	2008_Zhejiang_WZ08ZJ025_HTS	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,31G,33N,54M,58I,92P,128D,148V,178T,200S,207T,208G
KJ613994	2008_Zhejiang_WZ08ZJ032_MSM	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,14S,15L,31G,33N,54M,58I,83T,92P,120S,123S,128D,148V,178T,200S,207T,208G
KJ613995	2008_Zhejiang_WZ08ZJ033_HTS	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,15L,31G,33N,41T,54M,58I,87Q,92P,96I,116A,128D,148I,178T,200S,207T,208G
KJ613996	2008_Zhejiang_WZ08ZJ034_HTS	China	2008	genomic RNA	subtype: B	1	209	6L,14P,44A,83L,91V,116A,120S,148V,180D
KJ613997	2008_Zhejiang_WZ08ZJ038_HTS	China	2008	genomic RNA	subtype: CRF01_AE	1	209	6A,14P,31G,54M,58I,92P,110N,128D,148V,178T,200S,207T,208G

Genbank References: capsid (p24)

Database

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