<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Vidal (2016) High genetic diversity of HIV-1 strains in Chad, West Central Africa J. Acquir. Immune Defic. Syndr. 33 (2), 239-246 (2 5.42e-167 109 107 Naive PBMC Direct PCR Molecular epidemiology

Download sequences

AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
AJ490995Chadgenomic DNAsubtype: G1421931N,58A,71D,86Q,87Q,92P,96I,110N,111Q,116A,148V,169F,178T,183G,187D,199R,200S,203R,208G
AJ490996Chadgenomic DNAsubtype: A1421915L,41T,54M,58I,71D,78V,83A,92P,120S,148V,169F,171A,180D,200S,207T,208G
AJ490997Chadgenomic DNAsubtype: A1421914S,15L,27I,31S,41T,54M,58I,71D,83T,87Q,91V,98D,116A,120S,148V,169F,178T,187D,200S,208G
AJ490998Chadgenomic DNAsubtype: D'1421915L,27I,29V,33N,83L,87Q,91A,92V,93A,96I,116T,120S,148V,180D,207V,208G
AJ490999Chadgenomic DNAsubtype: CRF111421915M,27I,47T,54M,58I,71D,83M,87Q,92P,120G,124V,131R,148V,154K,169F,171V,178T,183G,191I,200S,203R,207S,208G
AJ491000Chadgenomic DNAsubtype: CRF021421914S,27I,54M,58I,71D,79D,83T,87P,98D,120S,148V,169F,178T,200S,203R,209S,210S
AJ491001Chadgenomic DNAsubtype: D'1421915L,27I,33N,83L,91V,120S,148V,180D,208G
AJ491002Chadgenomic DNAsubtype: D'1421927I,83L,87Q,91V,98D,116A,120S,148V,183G,208G
AJ491003Chadgenomic DNAsubtype: U1421915L,27I,50G,54L,83L,91V,116A,120G,128D,148V,154K,178T,212K,217S
AJ491004Chadgenomic DNAsubtype: A1421914N,15L,27I,41T,54M,58I,71D,83T,91V,92Q,110N,120S,148V,154K,160T,169F,178T,187D,200S,208G
AJ491005Chadgenomic DNAsubtype: D1421914S,15L,27I,83L,91V,148V,154K,180D,205M,208G
AJ491006Chadgenomic DNAsubtype: D'1421927I,33N,83L,91V,120S,148V,154K,180D,208G
AJ491007Chadgenomic DNAsubtype: CRF111421954M,58I,71D,79D,83M,92P,120G,124V,131R,148V,154K,169F,178T,183G,187D,191I,200S,203R,207A,208G
AJ491008Chadgenomic DNAsubtype: CRF021421914S,41T,54M,58I,71D,87Q,120S,135V,148V,169F,177T,178T,180D,187D,208G
AJ491009Chadgenomic DNAsubtype: CRF021421914S,15M,27I,41T,54M,58I,71D,83T,92P,116A,120S,124V,135V,148V,169F,178T,200S,203R,208G
AJ491010Chadgenomic DNAsubtype: A1421914S,15V,27I,31G,41T,58I,71D,120S,148V,169F,178T,187D,200S,208G
AJ491011Chadgenomic DNAsubtype: CRF021421914S,15M,27I,54M,58I,71D,83L,91A,92P,110N,120S,128D,148V,169F,171A,178T,183G,203R,204G,208G,210S,216S
AJ491012Chadgenomic DNAsubtype: G12276A,11T,71D,83L,86P,87Q,92P,96I,116R,120S,148V,169F,178T,183G,187D,203R,208G,219E
AJ491013Chadgenomic DNAsubtype: CRF021421914S,15M,27I,44A,48P,54M,58V,71D,86I,91N,92P,120A,148V,169F,178T,200S,203R,208G
AJ491014Chadgenomic DNAsubtype: A1421914S,15L,26A,41T,54M,58I,71D,87Q,92P,110N,120S,148V,154K,160S,169F,178T,180A,200S,203R,207A,208G
AJ491015Chadgenomic DNAsubtype: CRF021421926A,27I,33N,41T,54M,58I,71D,83T,92P,120S,135V,148V,169F,188S,203R,208G
AJ491016Chadgenomic DNAsubtype: D'1421915L,27I,33N,83L,91V,120S,148V,178T,208G
AJ491017Chadgenomic DNAsubtype: CRF011421915L,31G,33N,54M,56P,58I,71D,83L,92P,106R,110N,120S,128D,146N,148V,149G,154K,160T,169F,178T,187D,200S,207T,208G
AJ491018Chadgenomic DNAsubtype: CRF111421915M,54M,58I,71D,83M,92P,110N,116A,120G,124V,131R,148V,154K,169F,178T,183G,191I,200S,203R,207A,208G
AJ491019Chadgenomic DNAsubtype: CRF011421915L,31G,33N,54M,58I,71D,83L,91A,92P,120S,128D,148V,169F,178T,200S,207T,208G
AJ491020Chadgenomic DNAsubtype: D'52276L,23*,27I,80*,83L,86A,87Q,91V,98D,100K,120S,133*,137R,148V,156R,178T,179H,184*,208G,210N,225S
AJ491021Chadgenomic DNAsubtype: G12276A,11T,14P,41T,71D,79D,83M,86Q,87P,91L,92P,96L,98D,116R,120S,128D,148V,154K,169F,178T,187D,203R,208G,219L,227N
AJ491022Chadgenomic DNAsubtype: CRF111421914P,15V,27I,54M,58I,71D,87Q,92P,96I,120G,124V,128D,131R,148V,154K,169F,178T,183G,191M,200S,203R,207S,208G
AJ491023Chadgenomic DNAsubtype: A12313L,6A,33N,54M,58I,71D,83A,92P,120S,128D,148V,154K,169F,178T,183G,187D,203R,208G,210S
AJ491024Chadgenomic DNAsubtype: CRF111421914S,15V,26A,27I,48A,50Y,54M,58I,71D,83M,92P,120A,124V,128D,129V,131R,132K,148V,154K,169F,178T,183G,187D,188S,191I,200S,203R,208G
AJ491025Chadgenomic DNAsubtype: CRF0212316A,11T,14S,15L,27I,54M,58I,71D,91V,92P,120G,124V,128D,148V,169F,178T,208G,225X
AJ491026Chadgenomic DNAsubtype: D'1421927I,41T,78V,83L,86P,87Q,91L,116T,120S,148V,160S,178T,200S,208G,213D
AJ491028Chadgenomic DNAsubtype: D'12302Y,3S,6L,15L,33N,83L,120S,148V,180D,208G,228V,230F
AJ491029Chadgenomic DNAsubtype: G1421971D,83M,86P,87Q,92P,96I,116T,120G,148V,154K,169F,183G,187D,200N,203R,208G
AJ491030Chadgenomic DNAsubtype: A1421931G,33N,54M,58I,71D,78V,83L,92P,120S,128D,148V,154K,169F,178T,183G,187D,208G,210S
AJ491031Chadgenomic DNAsubtype: A12276A,31G,33N,54M,58I,71D,78V,83L,92P,120S,128D,148V,154K,169F,178T,183G,187D,203R,208G,210S
AJ491032Chadgenomic DNAsubtype: G12256A,10X,14S,27I,41T,71D,83L,86Q,87Q,91F,92P,96I,116T,120S,148V,154K,169F,178T,180D,187D,200N,203R,208G,225S
AJ491033Chadgenomic DNAsubtype: D'1421927I,33N,44A,83L,120S,148V,178T,208G
AJ491034Chadgenomic DNAsubtype: CRF011421915L,27I,31G,33N,54M,58I,71D,83I,92P,120S,124V,129V,148V,169F,178T,200S,207T,208G,210S
AJ491035Chadgenomic DNAsubtype: D'1421927I,33N,44A,83L,87Q,91V,120S,148V,160S,178T,208G,210N
AJ491036Chadgenomic DNAsubtype: A62276S,11T,14P,26A,41T,54M,58I,71D,87Q,91V,92P,96L,148V,154K,169F,178T,180A,191I,200S,203R,207T,208G,225X
AJ491037Chadgenomic DNAsubtype: D'1421927I,33N,83L,87Q,91V,120S,178T,207T,208G
AJ491038Chadgenomic DNAsubtype: U1421914S,27I,54M,58I,71D,91V,92P,120S,124V,148V,169F,180D,187D,207Q,208G
AJ491039Chadgenomic DNAsubtype: D'1421927I,33N,83L,91V,120S,148V,208G
AJ491040Chadgenomic DNAsubtype: CRF111421914P,15V,27I,54M,58I,71D,72A,79D,83L,87Q,96L,120S,124V,131R,148V,154K,169F,178T,191I,200S,207T,208G
AJ491041Chadgenomic DNAsubtype: CRF1112276A,10P,27I,50G,54M,58I,71D,87Q,92P,120S,128D,131R,148V,154K,169F,178T,183G,187D,191I,200S,203R,207A,208G
AJ491042Chadgenomic DNAsubtype: A12276A,11T,14S,15L,26A,41T,54M,58I,71D,87Q,92P,120S,148V,169F,178T,180A,200S,203R,207A,208G
AJ491043Chadgenomic DNAsubtype: A823127I,54M,58I,71D,92P,120G,124V,131R,148V,154K,169F,178T,200N,203R,208G
AJ491044Chadgenomic DNAsubtype: D'1421915L,27I,33N,83L,93L,116A,120S,124V,148V,177C,178T,179A,208G
AJ491045Chadgenomic DNAsubtype: A12311L,2L,6A,11T,12Y,14S,15L,27I,31S,41T,54M,58I,71D,72A,91V,92Q,120S,140R,141V,143K,148V,169F,178T,187D,200A,203R,208G
AJ491046Chadgenomic DNAsubtype: A12316A,10P,11I,15M,27I,54M,58I,71D,83M,86I,91A,92P,120G,124V,131R,148V,154K,169F,178T,183G,191I,200S,203R,207A,208G,225S
AJ491047Chadgenomic DNAsubtype: G1421971D,83M,86Q,87Q,92P,96I,110N,116T,120S,148V,169F,178T,183G,187D,203R,208G
AJ491048Chadgenomic DNAsubtype: A1421914S,15L,27I,31S,41T,54M,58I,71D,92Q,120S,148V,169F,178T,187D,200S,208G
AJ491049Chadgenomic DNAsubtype: G1421914S,15L,27I,41T,71D,75D,83L,86Q,87Q,96I,116A,148V,154K,169F,178T,180D,187D,203R,208G
AJ491050Chadgenomic DNAsubtype: CRF011421915L,27I,31G,33N,47S,54M,58I,71D,83A,86I,92P,120S,148V,169F,171V,178T,200S,207T,208G
AJ491051Chadgenomic DNAsubtype: F132226A,11T,14S,15M,27I,54M,58I,71D,72A,83T,92P,120S,124V,148V,154K,169F,178T,187D,200S,208G
AJ491052Chadgenomic DNAsubtype: CRF021421914S,15M,27I,54M,58I,71D,83I,120S,148V,169F,178T,199R,200S,203R,208G,217P
AJ491053Chadgenomic DNAsubtype: A1421914P,15M,27I,54M,58I,71D,92P,120S,128D,169F,178T,203R,208G
AJ491054Chadgenomic DNAsubtype: CRF111421915V,54M,58I,71D,92P,120S,124V,131R,148V,169F,178T,183A,200S,203R,208G
AJ491055Chadgenomic DNAsubtype: CRF011023112Y,14P,15V,31G,54M,58I,71D,83L,91A,92P,110N,120S,128D,148V,169F,178T,200S,207S,208G,225X
AJ491056Chadgenomic DNAsubtype: G1421914R,15L,71D,83L,86P,87Q,92Q,96I,98D,110N,116R,120S,148V,154K,169F,178T,183G,187D,191I,207Q,208G,210S
AJ491057Chadgenomic DNAsubtype: CRF021421914S,15L,27I,54M,58I,71D,83T,87Q,92P,120S,128D,148V,169F,178T,203R,208G,217S
AJ491058Chadgenomic DNAsubtype: A1421914S,15L,31S,41I,54M,58I,71D,83T,91V,92Q,96L,110S,132K,135V,148V,169F,178T,187D,200A,208G
AJ491059Chadgenomic DNAsubtype: A22272M,3L,6A,14T,15L,27I,31S,41T,50G,58I,71D,79D,83T,87Q,91V,92P,96L,120S,148V,169F,178T,180A,187D,200A,203R,208G,221LMV,225D
AJ491060Chadgenomic DNAsubtype: CRF1152276A,15V,18S,27I,54M,58I,71D,83I,92P,120S,124V,131R,148V,154K,169F,178T,183G,191I,203R,207A,208G,225S
AJ491061Chadgenomic DNAsubtype: CRF0112276A,14P,15V,26A,31G,54M,58I,61D,71D,78V,83L,92P,120S,128D,148V,169F,171V,178T,200A,203R,225S
AJ491062Chadgenomic DNAsubtype: G12316A,23*,71D,80*,83I,86Q,87Q,92P,96I,97K,100S,101R,116R,117*,120S,137R,148V,152N,154K,156R,162K,166N,169F,178T,183H,184*,187D,203R,208R,210S,228S
AJ491063Chadgenomic DNAsubtype: CRF1112276A,8X,11I,14P,15M,31G,41A,54M,58I,71D,79D,83T,92P,120S,124V,132K,148V,169F,178T,200S,207T,208G,223X
AJ491064Chadgenomic DNAsubtype: A12316A,11I,14S,15L,26A,41T,54M,58I,71D,83A,91A,92P,120S,148V,169F,178T,180A,199R,200S,207T,208G,225X
AJ491065Chadgenomic DNAsubtype: A62276A,11T,14S,15L,26A,54M,58I,71D,83L,87Q,92P,96I,120G,148V,169F,178T,180A,200S,203R,207T,208G
AJ491066Chadgenomic DNAsubtype: A12236A,8X,11I,14S,15L,27I,31S,41T,54M,58I,71D,92Q,96L,116Q,120S,148V,169F,178T,187V,195I,199M,200S,204V,205C,208G,210L,211*LS,214W,219X
AJ491067Chadgenomic DNAsubtype: A12316A,14P,54M,58I,71D,83L,92P,120A,124V,128D,129L,131R,148V,154K,169F,178T,183G,191I,200S,203R,207A,208G,219X
AJ491068Chadgenomic DNAsubtype: F172317A,9T,11A,12Y,14S,15L,27I,44A,50G,71D,83L,87Q,92P,96I,116Q,120S,124V,148V,154K,169F,178T,183D,187D,208G
AJ491069Chadgenomic DNAsubtype: A12316A,14P,15M,27I,29D,54M,58I,71D,83M,92P,110N,116A,120G,124V,131R,148V,154K,169F,178T,180D,187D,203R,208G,231W
AJ491070Chadgenomic DNAsubtype: D'12246L,27I,33N,83L,116A,120S,124V,148V,180D,208G,209L,217X
AJ491071Chadgenomic DNAsubtype: G12276A,15L,71D,83I,86Q,87Q,92P,96I,116T,148V,154K,169F,178T,183G,187D,203R,208G
AJ491072Chadgenomic DNAsubtype: CRF0212276A,11T,12Y,14N,15M,27I,41T,54M,58I,71D,83T,91V,92P,120S,135V,148V,169F,178T,200S,203R,208G
AJ491073Chadgenomic DNAsubtype: D'12192L,3L,4E,6L,15L,27I,33N,83L,87P,98D,120S,148V,208G
AJ491075Chadgenomic DNAsubtype: CRF1112283IM,6A,11I,14S,15M,31G,54M,58I,71D,83M,87Q,92P,120S,124V,148V,169F,178T,180D,200A,207T,208G,225T,228Q
AJ491076Chadgenomic DNAsubtype: D'12256L,15L,27I,31S,33N,41V,83L,91V,120S,132K,135V,136I,148V,154K,178T,194S,200N,208G,225S
AJ491077Chadgenomic DNAsubtype: D922412R,15L,27I,33N,36I,83L,91V,110N,120S,148V,149G,154K,208G,211IM,217V,222R
AJ491078Chadgenomic DNAsubtype: G622311M,15L,71D,83L,86Q,87Q,92P,96I,100S,110N,116R,120S,148V,154K,169F,177G,183G,187D,208G,223D
AJ491079Chadgenomic DNAsubtype: CRF1112206A,11I,14P,15M,54M,58I,71D,83M,87Q,92P,120G,124V,131R,148V,169F,178T,183G,191I,200S,203R,207T,208G,210S,215X,216S,217P,220A
AJ491080Chadgenomic DNAsubtype: CRF0212316A,11T,14P,15V,27I,54M,58I,71D,83T,91V,96L,111I,120S,148V,169F,178T,191I,200S,203R,208G,231F
AJ491081Chadgenomic DNAsubtype: CRF0212266A,10P,15M,27I,31G,41T,54M,58I,71D,83A,92P,110S,111I,120S,135V,148V,154K,169F,178T,194S,200S,203R,208G
AJ491082Chadgenomic DNAsubtype: F122276M,10L,11A,12Y,14S,15L,27I,44A,71D,83L,86P,87Q,92P,96I,116Q,120S,124V,148V,154K,169F,178T,183G,187D,191I,208G
AJ491083Chadgenomic DNAsubtype: G22266A,18K,23*,28K,71N,75K,79K,80*,83I,86P,87Q,92P,96I,98K,103N,106E,113K,116K,117*,118I,120S,128K,132K,133*,143Q,148V,154K,163N,166N,169F,173K,175K,178T,180K,183G,184*,187D,208G,214I,220E,222E,223E,225S
AJ491084Chadgenomic DNAsubtype: D'12316L,27I,33N,83L,91V,116A,120S,124V,148V,178T,208G,231F
AJ491085Chadgenomic DNAsubtype: CRF1112276A,14T,15M,54M,58I,71D,92P,120G,124V,131R,148V,169F,178T,183G,191I,200S,203R,207T,208G,227H
AJ491086Chadgenomic DNAsubtype: CRF1112236A,10P,11I,15M,54M,58I,71D,83I,92P,120G,124V,128D,131R,148V,154K,169F,178T,183G,191I,200S,203R,208G
AJ491087Chadgenomic DNAsubtype: CRF0212286A,11I,26A,27I,54M,58I,71D,83A,87Q,92P,120S,148V,169F,178T,187G,203R,208G,211I,225S,228Q
AJ491088Chadgenomic DNAsubtype: D'12316L,15L,27I,33N,83L,91V,96L,110N,116Q,120S,148V,160S,178T,208G,231F
AJ491089Chadgenomic DNAsubtype: CRF1112202Y,3S,6A,11T,14P,15M,27I,54M,58I,71D,83L,92P,110N,116A,120G,123A,124V,128D,131R,148V,153V,154K,169F,171I,178T,183G,191I,200S,203R,207T,208G
AJ491090Chadgenomic DNAsubtype: CRF01923114S,15L,31G,33N,54M,58I,91N,92P,120G,148V,178T,200S,207T,208G,225S
AJ491091Chadgenomic DNAsubtype: A12276A,31G,33N,54M,58I,71D,83L,92P,96I,120S,128D,148V,154K,169F,178T,180D,187D,200S,203R,208G,225S
AJ491092Chadgenomic DNAsubtype: D'12276L,15L,27I,33N,83T,87Q,91L,95H,120S,148V,180D,208Q,225S
AJ491093Chadgenomic DNAsubtype: G12276A,11I,44A,50H,71D,83I,86P,87Q,91L,92P,96I,116R,120S,148V,154K,169F,178T,183G,187D,203R,208G,225S
AJ491094Chadgenomic DNAsubtype: G12276A,11T,71D,75D,79D,83L,86P,87Q,92P,96I,105I,107A,116T,120S,148V,153V,154K,169F,170R,171I,178T,183S,187D,208G,210N,217T
AJ491095Chadgenomic DNAsubtype: A12316A,11T,14S,15L,27I,54M,58V,71D,92P,120G,124V,128D,131R,148V,154K,169F,171C,178T,200S,207T,208G,223E,228S
AJ491096Chadgenomic DNAsubtype: CRF0252276A,11I,12Y,14S,15M,23*,27I,54M,58I,71D,80*,83L,86A,87Q,91F,92P,111P,116A,120G,123A,128D,148V,169F,171A,178T,180D,200S,203R,208G,217T,225C
AJ491097Chadgenomic DNAsubtype: G12266A,11T,71D,86P,87Q,92P,96I,116R,120S,148V,169F,178T,183G,187D,203R,208G
AJ491098Chadgenomic DNAsubtype: CRF0212276A,14S,15M,27I,54M,58I,71D,83L,92P,120S,128D,148V,169F,178T,200S,203R,208G
AJ491099Chadgenomic DNAsubtype: CRF1112276A,14T,52V,54M,58I,71D,83T,92P,120S,124V,131R,132K,134V,148V,154K,169F,178T,183G,191I,200S,203R,207A,208G,220*Y,221M
AJ491100Chadgenomic DNAsubtype: A12262Y,3S,6A,11I,14P,15V,27I,31G,48I,54M,58I,71D,83L,92P,111I,120G,128D,148V,169F,178T,200S,203R,207T,208G,219HQ,225S
AJ491101Chadgenomic DNAsubtype: A12276A,14S,15L,27I,31S,41T,54M,58I,71D,87Q,120S,148V,169F,178T,187D,200S,208G
AJ491102Chadgenomic DNAsubtype: G12266A,14P,15L,25Q,27I,41T,47S,71D,75D,83L,86P,116A,120S,148V,154K,169F,178T,180D,203R,207A,208G,225S
AJ491103Chadgenomic DNAsubtype: CRF0212276A,10W,11T,14S,15M,27I,47C,54M,58I,71D,92P,120S,135V,148V,154K,163E,169F,178T,200S,203R,208G,212V,225S
AJ491104Chadgenomic DNAsubtype: G12266A,9R,11T,71D,83I,86Q,87Q,92P,96I,116R,120S,148V,154K,169F,171V,178T,183G,187D,199R,207S,208G
AJ491105Chadgenomic DNAsubtype: A12276A,11T,14S,15L,27I,54M,58V,71D,92P,120G,124V,128D,131R,148V,154K,169F,171C,178T,200S,207T,208G

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